Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045996.01.T01 | KAF2560297.1 | 100 | 136 | 0 | 0 | 1 | 136 | 28 | 163 | 3.60E-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045996.01.T01 | A2XHJ3 | 100 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.42E-95 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045996.01.T01 | A0A453QJ99 | 100.000 | 136 | 0 | 0 | 1 | 136 | 32 | 167 | 1.71e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045996.01.T01 | MTR_4g097175 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.38e-96 | 274 |
| MsG0880045996.01.T01 | MTR_1g023630 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.38e-96 | 274 |
| MsG0880045996.01.T01 | MTR_8g061940 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.38e-96 | 274 |
| MsG0880045996.01.T01 | MTR_8g099430 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 5.05e-96 | 272 |
| MsG0880045996.01.T01 | MTR_4g097170 | 99.265 | 136 | 1 | 0 | 1 | 136 | 42 | 177 | 8.03e-95 | 271 |
| MsG0880045996.01.T01 | MTR_7g059070 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_5g029820 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_5g029770 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_4g065990 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_4g088150 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_2g035230 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_8g092720 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_8g063500 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_8g103245 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_8g092820 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.42e-93 | 265 |
| MsG0880045996.01.T01 | MTR_7g013610 | 97.059 | 136 | 4 | 0 | 1 | 136 | 100 | 235 | 2.74e-92 | 266 |
| MsG0880045996.01.T01 | MTR_2g082310 | 92.647 | 136 | 10 | 0 | 1 | 136 | 1 | 136 | 4.34e-90 | 257 |
| MsG0880045996.01.T01 | MTR_2g082340 | 92.647 | 136 | 10 | 0 | 1 | 136 | 1 | 136 | 4.34e-90 | 257 |
| MsG0880045996.01.T01 | MTR_2g082370 | 86.301 | 146 | 10 | 1 | 1 | 136 | 1 | 146 | 3.95e-84 | 243 |
| MsG0880045996.01.T01 | MTR_2g082400 | 85.294 | 136 | 18 | 2 | 1 | 135 | 1 | 135 | 1.44e-76 | 223 |
| MsG0880045996.01.T01 | MTR_7g013600 | 83.036 | 112 | 19 | 0 | 25 | 136 | 2 | 113 | 1.79e-62 | 187 |
| MsG0880045996.01.T01 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 3.94e-56 | 172 |
| MsG0880045996.01.T01 | MTR_1g023630 | 77.477 | 111 | 23 | 1 | 1 | 111 | 1 | 109 | 1.57e-54 | 167 |
| MsG0880045996.01.T01 | MTR_7g023880 | 60.150 | 133 | 39 | 3 | 3 | 134 | 18 | 137 | 2.49e-44 | 142 |
| MsG0880045996.01.T01 | MTR_5g024630 | 63.793 | 116 | 39 | 2 | 1 | 116 | 1 | 113 | 1.60e-42 | 136 |
| MsG0880045996.01.T01 | MTR_5g024530 | 65.455 | 110 | 15 | 2 | 19 | 128 | 68 | 154 | 6.49e-40 | 131 |
| MsG0880045996.01.T01 | MTR_0197s0100 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 1.91e-39 | 129 |
| MsG0880045996.01.T01 | MTR_8g027840 | 56.122 | 98 | 42 | 1 | 37 | 133 | 28 | 125 | 4.82e-31 | 108 |
| MsG0880045996.01.T01 | MTR_8g105150 | 59.783 | 92 | 3 | 2 | 37 | 127 | 11 | 69 | 1.28e-26 | 95.1 |
| MsG0880045996.01.T01 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 5.96e-20 | 80.5 |
| MsG0880045996.01.T01 | MTR_5g089120 | 68.085 | 47 | 15 | 0 | 82 | 128 | 6 | 52 | 1.62e-16 | 70.1 |
| MsG0880045996.01.T01 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.17e-15 | 66.6 |
| MsG0880045996.01.T01 | MTR_4g128040 | 72.973 | 37 | 10 | 0 | 79 | 115 | 20 | 56 | 6.28e-14 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045996.01.T01 | AT5G10980 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40040 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40040 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40040 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40030 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40030 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40030 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.45e-96 | 274 |
| MsG0880045996.01.T01 | AT4G40030 | 100.000 | 136 | 0 | 0 | 1 | 136 | 29 | 164 | 2.12e-96 | 275 |
| MsG0880045996.01.T01 | AT5G65360 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 4.00e-93 | 265 |
| MsG0880045996.01.T01 | AT5G10390 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 4.00e-93 | 265 |
| MsG0880045996.01.T01 | AT5G10400 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 4.00e-93 | 265 |
| MsG0880045996.01.T01 | AT3G27360 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 4.00e-93 | 265 |
| MsG0880045996.01.T01 | AT1G09200 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 4.00e-93 | 265 |
| MsG0880045996.01.T01 | AT1G75600 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.06e-92 | 264 |
| MsG0880045996.01.T01 | AT1G13370 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 2.25e-91 | 261 |
| MsG0880045996.01.T01 | AT5G65350 | 92.647 | 136 | 10 | 0 | 1 | 136 | 1 | 136 | 1.32e-88 | 254 |
| MsG0880045996.01.T01 | AT1G19890 | 90.511 | 137 | 12 | 1 | 1 | 136 | 1 | 137 | 1.97e-85 | 246 |
| MsG0880045996.01.T01 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 1.19e-65 | 196 |
| MsG0880045996.01.T01 | AT1G01370 | 54.867 | 113 | 48 | 2 | 24 | 134 | 63 | 174 | 3.36e-32 | 112 |
| MsG0880045996.01.T01 | AT1G01370 | 54.867 | 113 | 48 | 2 | 24 | 134 | 63 | 174 | 3.36e-32 | 112 |
| MsG0880045996.01.T01 | AT1G01370 | 54.867 | 113 | 48 | 2 | 24 | 134 | 63 | 174 | 3.36e-32 | 112 |
| MsG0880045996.01.T01 | AT1G01370 | 54.867 | 113 | 48 | 2 | 24 | 134 | 63 | 174 | 3.36e-32 | 112 |
Find 55 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGGAGGATGCTGCTTT+TGG | 0.276400 | 8:+67386908 | MsG0880045996.01.T01:exon |
| TTGGTTGCAAGTTGCTTCCT+TGG | 0.333909 | 8:-67386218 | None:intergenic |
| CACCGAAGAGCAACAGTTCC+TGG | 0.341134 | 8:-67386399 | None:intergenic |
| TCAAGAGCTCGGTACTCTTC+TGG | 0.348030 | 8:-67386571 | None:intergenic |
| CCTTGCCAACTGGATGTCCT+TGG | 0.351370 | 8:-67386866 | None:intergenic |
| CACGGATCCTCCTTGCCAAC+TGG | 0.363910 | 8:-67386876 | None:intergenic |
| GCTAGAAATACTAGATTAGA+TGG | 0.379840 | 8:-67387162 | None:intergenic |
| TAATTTGCTTGCAATGACTT+TGG | 0.419143 | 8:+67387066 | MsG0880045996.01.T01:three_prime_UTR |
| CTTGCCAACTGGATGTCCTT+GGG | 0.434839 | 8:-67386865 | None:intergenic |
| ATATCTTGTTGGTCTCTTTG+AGG | 0.438404 | 8:+67386798 | MsG0880045996.01.T01:CDS |
| TGAAATTGCTCAGGACTTCA+AGG | 0.441698 | 8:+67386625 | MsG0880045996.01.T01:CDS |
| TTCTTAACTCCACCAGTAGT+TGG | 0.444620 | 8:-67386360 | None:intergenic |
| GCTGCTGAGGCATATCTTGT+TGG | 0.457640 | 8:+67386787 | MsG0880045996.01.T01:CDS |
| TTGAATTGATTTAGTTGCTA+GGG | 0.461048 | 8:+67386969 | MsG0880045996.01.T01:three_prime_UTR |
| CACGAACCAACCTCTGGAAT+GGG | 0.467959 | 8:-67386604 | None:intergenic |
| CGCAAGTCTGCACCAACTAC+TGG | 0.471576 | 8:+67386348 | MsG0880045996.01.T01:CDS |
| GCCCAGGAACTGTTGCTCTT+CGG | 0.472314 | 8:+67386397 | MsG0880045996.01.T01:CDS |
| CTTCCTTGGTGCCTTACCAC+CGG | 0.479634 | 8:-67386204 | None:intergenic |
| TGCATTGCAAGAGGCTGCTG+AGG | 0.479818 | 8:+67386774 | MsG0880045996.01.T01:CDS |
| AGAGTACCGAGCTCTTGATC+AGG | 0.484025 | 8:+67386576 | MsG0880045996.01.T01:CDS |
| ATCCGTGGTGAGCGCGCCTA+AGG | 0.494321 | 8:+67386892 | MsG0880045996.01.T01:CDS |
| ATTGAATTGATTTAGTTGCT+AGG | 0.497538 | 8:+67386968 | MsG0880045996.01.T01:three_prime_UTR |
| ATGCAAGCACAGCATGACTC+TGG | 0.500306 | 8:-67386756 | None:intergenic |
| TCGTAAGTCAACCGGTGGTA+AGG | 0.501661 | 8:+67386193 | MsG0880045996.01.T01:CDS |
| CAATTTCACGAACCAACCTC+TGG | 0.503886 | 8:-67386610 | None:intergenic |
| CTAGATTAGATGGCAACAAA+AGG | 0.506318 | 8:-67387152 | None:intergenic |
| TGACTTACGAGCTGTTTGCT+TGG | 0.508768 | 8:-67386180 | None:intergenic |
| GTTGGTTCGTGAAATTGCTC+AGG | 0.513873 | 8:+67386616 | MsG0880045996.01.T01:CDS |
| TGCTGTGCTTGCATTGCAAG+AGG | 0.513898 | 8:+67386765 | MsG0880045996.01.T01:CDS |
| CAAACAGCTCGTAAGTCAAC+CGG | 0.519692 | 8:+67386185 | MsG0880045996.01.T01:CDS |
| TCACGAACCAACCTCTGGAA+TGG | 0.521454 | 8:-67386605 | None:intergenic |
| TTTGGTGCTGTTTAGATGGG+TGG | 0.522117 | 8:+67386926 | MsG0880045996.01.T01:three_prime_UTR |
| CCAAAAGCAGCATCCTCCTT+AGG | 0.547324 | 8:-67386908 | None:intergenic |
| TAATAGTAACTCGCTTGGCA+TGG | 0.547452 | 8:-67386840 | None:intergenic |
| CTCCTTAGGCGCGCTCACCA+CGG | 0.549887 | 8:-67386894 | None:intergenic |
| ACCGAAGAGCAACAGTTCCT+GGG | 0.559961 | 8:-67386398 | None:intergenic |
| CGTGGTGAGCGCGCCTAAGG+AGG | 0.568469 | 8:+67386895 | MsG0880045996.01.T01:exon |
| GAAGCTCCCATTCCAGAGGT+TGG | 0.572362 | 8:+67386598 | MsG0880045996.01.T01:CDS |
| GGGCATAATAGTAACTCGCT+TGG | 0.573260 | 8:-67386845 | None:intergenic |
| AAGGAAGCAACTTGCAACCA+AGG | 0.574800 | 8:+67386220 | MsG0880045996.01.T01:CDS |
| AAGCCACATCGTTATCGCCC+AGG | 0.581263 | 8:+67386381 | MsG0880045996.01.T01:CDS |
| CCAAGGACATCCAGTTGGCA+AGG | 0.588868 | 8:+67386866 | MsG0880045996.01.T01:CDS |
| TGAATTGATTTAGTTGCTAG+GGG | 0.600803 | 8:+67386970 | MsG0880045996.01.T01:three_prime_UTR |
| GAGCTTCCTGATCAAGAGCT+CGG | 0.624511 | 8:-67386582 | None:intergenic |
| GCGAGTTACTATTATGCCCA+AGG | 0.629580 | 8:+67386849 | MsG0880045996.01.T01:CDS |
| AAGTCTGCACCAACTACTGG+TGG | 0.650548 | 8:+67386351 | MsG0880045996.01.T01:CDS |
| TATGCCCAAGGACATCCAGT+TGG | 0.656475 | 8:+67386861 | MsG0880045996.01.T01:CDS |
| CAACCGGTGGTAAGGCACCA+AGG | 0.657003 | 8:+67386201 | MsG0880045996.01.T01:CDS |
| CCACAAAATAAAACGCAGAG+TGG | 0.659380 | 8:-67387125 | None:intergenic |
| TCAGGAAGCTCCCATTCCAG+AGG | 0.664518 | 8:+67386594 | MsG0880045996.01.T01:CDS |
| CAGTTGGCAAGGAGGATCCG+TGG | 0.664833 | 8:+67386877 | MsG0880045996.01.T01:CDS |
| CAGCATGACTCTGGAAACGA+AGG | 0.672290 | 8:-67386747 | None:intergenic |
| AGGACATCCAGTTGGCAAGG+AGG | 0.674393 | 8:+67386869 | MsG0880045996.01.T01:CDS |
| GTTCCTGGGCGATAACGATG+TGG | 0.684844 | 8:-67386384 | None:intergenic |
| ACAGCTCGTAAGTCAACCGG+TGG | 0.708150 | 8:+67386188 | MsG0880045996.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATCTTAATTTTAGTTTTT+GGG | + | Chr8:67387040-67387059 | MsG0880045996.01.T01:three_prime_UTR | 15.0% |
| !!! | GTTTCTAATAATTTGTTATT+TGG | + | Chr8:67386515-67386534 | MsG0880045996.01.T01:intron | 15.0% |
| !!! | TAATAATTTGTTATTTGGAT+TGG | + | Chr8:67386520-67386539 | MsG0880045996.01.T01:intron | 15.0% |
| !!! | GCTATCTTAATTTTAGTTTT+TGG | + | Chr8:67387039-67387058 | MsG0880045996.01.T01:three_prime_UTR | 20.0% |
| !!! | TATTTTAAAACAGTGAGATT+AGG | + | Chr8:67386543-67386562 | MsG0880045996.01.T01:intron | 20.0% |
| !!! | TTGTTTCTATTGAATTGAAT+TGG | + | Chr8:67386488-67386507 | MsG0880045996.01.T01:intron | 20.0% |
| ! | TCTATTGAATTGAATTGGTT+TGG | + | Chr8:67386493-67386512 | MsG0880045996.01.T01:intron | 25.0% |
| !! | ATTGAATTGATTTAGTTGCT+AGG | + | Chr8:67386968-67386987 | MsG0880045996.01.T01:three_prime_UTR | 25.0% |
| !! | CTGTTGAAAATTTTCTTTCA+GGG | + | Chr8:67386427-67386446 | MsG0880045996.01.T01:intron | 25.0% |
| !! | TCTGTTGAAAATTTTCTTTC+AGG | + | Chr8:67386426-67386445 | MsG0880045996.01.T01:intron | 25.0% |
| !! | TTGAATTGATTTAGTTGCTA+GGG | + | Chr8:67386969-67386988 | MsG0880045996.01.T01:three_prime_UTR | 25.0% |
| !!! | TATGTGTTCTTGTTTTTACT+GGG | + | Chr8:67387095-67387114 | MsG0880045996.01.T01:three_prime_UTR | 25.0% |
| !!! | TTATGTGTTCTTGTTTTTAC+TGG | + | Chr8:67387094-67387113 | MsG0880045996.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTCCCTTACCTTT+AGG | + | Chr8:67386320-67386339 | MsG0880045996.01.T01:intron | 25.0% |
| AAGCAACTAAAATCAAACCT+TGG | - | Chr8:67386240-67386259 | None:intergenic | 30.0% | |
| GCTAGAAATACTAGATTAGA+TGG | - | Chr8:67387165-67387184 | None:intergenic | 30.0% | |
| GGATGTGGTTTCTAATAATT+TGG | + | Chr8:67386707-67386726 | MsG0880045996.01.T01:intron | 30.0% | |
| ! | TGAATTGATTTAGTTGCTAG+GGG | + | Chr8:67386970-67386989 | MsG0880045996.01.T01:three_prime_UTR | 30.0% |
| !! | TAATTTGCTTGCAATGACTT+TGG | + | Chr8:67387066-67387085 | MsG0880045996.01.T01:three_prime_UTR | 30.0% |
| ATTCATGATCAGTGTAGTCA+AGG | + | Chr8:67386686-67386705 | MsG0880045996.01.T01:intron | 35.0% | |
| CTAGATTAGATGGCAACAAA+AGG | - | Chr8:67387155-67387174 | None:intergenic | 35.0% | |
| ! | ATATCTTGTTGGTCTCTTTG+AGG | + | Chr8:67386798-67386817 | MsG0880045996.01.T01:CDS | 35.0% |
| CCACAAAATAAAACGCAGAG+TGG | - | Chr8:67387128-67387147 | None:intergenic | 40.0% | |
| TAATAGTAACTCGCTTGGCA+TGG | - | Chr8:67386843-67386862 | None:intergenic | 40.0% | |
| TGAAATTGCTCAGGACTTCA+AGG | + | Chr8:67386625-67386644 | MsG0880045996.01.T01:CDS | 40.0% | |
| TTCTTAACTCCACCAGTAGT+TGG | - | Chr8:67386363-67386382 | None:intergenic | 40.0% | |
| !!! | CCACTCTGCGTTTTATTTTG+TGG | + | Chr8:67387125-67387144 | MsG0880045996.01.T01:three_prime_UTR | 40.0% |
| !!! | GCTTTTGGTGCTGTTTAGAT+GGG | + | Chr8:67386923-67386942 | MsG0880045996.01.T01:three_prime_UTR | 40.0% |
| !!! | TGCTTTTGGTGCTGTTTAGA+TGG | + | Chr8:67386922-67386941 | MsG0880045996.01.T01:three_prime_UTR | 40.0% |
| AAGGAAGCAACTTGCAACCA+AGG | + | Chr8:67386220-67386239 | MsG0880045996.01.T01:CDS | 45.0% | |
| CAAACAGCTCGTAAGTCAAC+CGG | + | Chr8:67386185-67386204 | MsG0880045996.01.T01:CDS | 45.0% | |
| CAATTTCACGAACCAACCTC+TGG | - | Chr8:67386613-67386632 | None:intergenic | 45.0% | |
| GATCAGTGTAGTCAAGGATG+TGG | + | Chr8:67386692-67386711 | MsG0880045996.01.T01:intron | 45.0% | |
| GCGAGTTACTATTATGCCCA+AGG | + | Chr8:67386849-67386868 | MsG0880045996.01.T01:CDS | 45.0% | |
| GGGCATAATAGTAACTCGCT+TGG | - | Chr8:67386848-67386867 | None:intergenic | 45.0% | |
| TGACTTACGAGCTGTTTGCT+TGG | - | Chr8:67386183-67386202 | None:intergenic | 45.0% | |
| TTGGTTGCAAGTTGCTTCCT+TGG | - | Chr8:67386221-67386240 | None:intergenic | 45.0% | |
| !! | GTTGGTTCGTGAAATTGCTC+AGG | + | Chr8:67386616-67386635 | MsG0880045996.01.T01:CDS | 45.0% |
| !! | TTTGGTGCTGTTTAGATGGG+TGG | + | Chr8:67386926-67386945 | MsG0880045996.01.T01:three_prime_UTR | 45.0% |
| AAGTCTGCACCAACTACTGG+TGG | + | Chr8:67386351-67386370 | MsG0880045996.01.T01:CDS | 50.0% | |
| ACCGAAGAGCAACAGTTCCT+GGG | - | Chr8:67386401-67386420 | None:intergenic | 50.0% | |
| ATGCAAGCACAGCATGACTC+TGG | - | Chr8:67386759-67386778 | None:intergenic | 50.0% | |
| CCAAAAGCAGCATCCTCCTT+AGG | - | Chr8:67386911-67386930 | None:intergenic | 50.0% | |
| CTTGCCAACTGGATGTCCTT+GGG | - | Chr8:67386868-67386887 | None:intergenic | 50.0% | |
| GAGCTTCCTGATCAAGAGCT+CGG | - | Chr8:67386585-67386604 | None:intergenic | 50.0% | |
| GCTGCTGAGGCATATCTTGT+TGG | + | Chr8:67386787-67386806 | MsG0880045996.01.T01:CDS | 50.0% | |
| TATGCCCAAGGACATCCAGT+TGG | + | Chr8:67386861-67386880 | MsG0880045996.01.T01:CDS | 50.0% | |
| TCAAGAGCTCGGTACTCTTC+TGG | - | Chr8:67386574-67386593 | None:intergenic | 50.0% | |
| TCGTAAGTCAACCGGTGGTA+AGG | + | Chr8:67386193-67386212 | MsG0880045996.01.T01:CDS | 50.0% | |
| TGCGTGCAGCCTAAAGGTAA+GGG | - | Chr8:67386332-67386351 | None:intergenic | 50.0% | |
| TGCTGTGCTTGCATTGCAAG+AGG | + | Chr8:67386765-67386784 | MsG0880045996.01.T01:CDS | 50.0% | |
| TTGCGTGCAGCCTAAAGGTA+AGG | - | Chr8:67386333-67386352 | None:intergenic | 50.0% | |
| ! | CAGCATGACTCTGGAAACGA+AGG | - | Chr8:67386750-67386769 | None:intergenic | 50.0% |
| ! | TCACGAACCAACCTCTGGAA+TGG | - | Chr8:67386608-67386627 | None:intergenic | 50.0% |
| !! | AGAGTACCGAGCTCTTGATC+AGG | + | Chr8:67386576-67386595 | MsG0880045996.01.T01:CDS | 50.0% |
| !! | CACGAACCAACCTCTGGAAT+GGG | - | Chr8:67386607-67386626 | None:intergenic | 50.0% |
| !!! | CCTAAGGAGGATGCTGCTTT+TGG | + | Chr8:67386908-67386927 | MsG0880045996.01.T01:exon | 50.0% |
| AAGCCACATCGTTATCGCCC+AGG | + | Chr8:67386381-67386400 | MsG0880045996.01.T01:CDS | 55.0% | |
| ACAGCTCGTAAGTCAACCGG+TGG | + | Chr8:67386188-67386207 | MsG0880045996.01.T01:CDS | 55.0% | |
| AGGACATCCAGTTGGCAAGG+AGG | + | Chr8:67386869-67386888 | MsG0880045996.01.T01:CDS | 55.0% | |
| CACCGAAGAGCAACAGTTCC+TGG | - | Chr8:67386402-67386421 | None:intergenic | 55.0% | |
| CAGACTTGCGTGCAGCCTAA+AGG | - | Chr8:67386338-67386357 | None:intergenic | 55.0% | |
| CCAAGGACATCCAGTTGGCA+AGG | + | Chr8:67386866-67386885 | MsG0880045996.01.T01:CDS | 55.0% | |
| CCTTGCCAACTGGATGTCCT+TGG | - | Chr8:67386869-67386888 | None:intergenic | 55.0% | |
| CGCAAGTCTGCACCAACTAC+TGG | + | Chr8:67386348-67386367 | MsG0880045996.01.T01:CDS | 55.0% | |
| GAAGCTCCCATTCCAGAGGT+TGG | + | Chr8:67386598-67386617 | MsG0880045996.01.T01:CDS | 55.0% | |
| GCCCAGGAACTGTTGCTCTT+CGG | + | Chr8:67386397-67386416 | MsG0880045996.01.T01:CDS | 55.0% | |
| GTTCCTGGGCGATAACGATG+TGG | - | Chr8:67386387-67386406 | None:intergenic | 55.0% | |
| TCAGGAAGCTCCCATTCCAG+AGG | + | Chr8:67386594-67386613 | MsG0880045996.01.T01:CDS | 55.0% | |
| TGCATTGCAAGAGGCTGCTG+AGG | + | Chr8:67386774-67386793 | MsG0880045996.01.T01:CDS | 55.0% | |
| !! | CTTCCTTGGTGCCTTACCAC+CGG | - | Chr8:67386207-67386226 | None:intergenic | 55.0% |
| CACGGATCCTCCTTGCCAAC+TGG | - | Chr8:67386879-67386898 | None:intergenic | 60.0% | |
| CAGTTGGCAAGGAGGATCCG+TGG | + | Chr8:67386877-67386896 | MsG0880045996.01.T01:CDS | 60.0% | |
| ! | CAACCGGTGGTAAGGCACCA+AGG | + | Chr8:67386201-67386220 | MsG0880045996.01.T01:CDS | 60.0% |
| ATCCGTGGTGAGCGCGCCTA+AGG | + | Chr8:67386892-67386911 | MsG0880045996.01.T01:CDS | 65.0% | |
| CTCCTTAGGCGCGCTCACCA+CGG | - | Chr8:67386897-67386916 | None:intergenic | 65.0% | |
| CGTGGTGAGCGCGCCTAAGG+AGG | + | Chr8:67386895-67386914 | MsG0880045996.01.T01:exon | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 67386170 | 67387191 | 67386170 | ID=MsG0880045996.01;Name=MsG0880045996.01 |
| Chr8 | mRNA | 67386170 | 67387191 | 67386170 | ID=MsG0880045996.01.T01;Parent=MsG0880045996.01;Name=MsG0880045996.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0.33|0.25|1|1|1|4|279|136 |
| Chr8 | exon | 67386170 | 67386241 | 67386170 | ID=MsG0880045996.01.T01:exon:15592;Parent=MsG0880045996.01.T01 |
| Chr8 | exon | 67386342 | 67386418 | 67386342 | ID=MsG0880045996.01.T01:exon:15593;Parent=MsG0880045996.01.T01 |
| Chr8 | exon | 67386556 | 67386646 | 67386556 | ID=MsG0880045996.01.T01:exon:15594;Parent=MsG0880045996.01.T01 |
| Chr8 | exon | 67386742 | 67387191 | 67386742 | ID=MsG0880045996.01.T01:exon:15595;Parent=MsG0880045996.01.T01 |
| Chr8 | CDS | 67386170 | 67386241 | 67386170 | ID=MsG0880045996.01.T01:cds;Parent=MsG0880045996.01.T01 |
| Chr8 | CDS | 67386342 | 67386418 | 67386342 | ID=MsG0880045996.01.T01:cds;Parent=MsG0880045996.01.T01 |
| Chr8 | CDS | 67386556 | 67386646 | 67386556 | ID=MsG0880045996.01.T01:cds;Parent=MsG0880045996.01.T01 |
| Chr8 | CDS | 67386742 | 67386912 | 67386742 | ID=MsG0880045996.01.T01:cds;Parent=MsG0880045996.01.T01 |
| Chr8 | three_prime_UTR | 67386913 | 67387191 | 67386913 | ID=MsG0880045996.01.T01:three_prime_utr;Parent=MsG0880045996.01.T01 |
| Gene Sequence |
| Protein sequence |
