Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046820.01.T01 | XP_003609409.1 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 1.81E-162 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046820.01.T01 | Q9LFP1 | 64.286 | 224 | 77 | 2 | 1 | 224 | 1 | 221 | 1.02E-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046820.01.T01 | G7JFD0 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 8.63e-163 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0880046820.01 | 0.807126 | 5.886775e-50 | 3.252161e-47 |
| MsG0880044704.01 | MsG0880046820.01 | 0.805964 | 1.035298e-49 | 5.551924e-47 |
| MsG0180003403.01 | MsG0880046820.01 | 0.802164 | 6.389531e-49 | 3.108109e-46 |
| MsG0180003741.01 | MsG0880046820.01 | 0.825761 | 3.929407e-54 | 3.614765e-51 |
| MsG0180005113.01 | MsG0880046820.01 | 0.805669 | 1.194205e-49 | 6.355634e-47 |
| MsG0780040846.01 | MsG0880046820.01 | 0.808386 | 3.177660e-50 | 1.814505e-47 |
| MsG0780041259.01 | MsG0880046820.01 | 0.802036 | 6.787675e-49 | 3.291023e-46 |
| MsG0780041448.01 | MsG0880046820.01 | 0.800875 | 1.173773e-48 | 5.526589e-46 |
| MsG0780041699.01 | MsG0880046820.01 | 0.814707 | 1.343045e-51 | 9.077386e-49 |
| MsG0680031264.01 | MsG0880046820.01 | 0.822245 | 2.626212e-53 | 2.186040e-50 |
| MsG0680031621.01 | MsG0880046820.01 | 0.853364 | 2.509551e-61 | 5.408858e-58 |
| MsG0580027925.01 | MsG0880046820.01 | 0.812761 | 3.603826e-51 | 2.310879e-48 |
| MsG0580028407.01 | MsG0880046820.01 | 0.803568 | 3.276010e-49 | 1.651893e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046820.01.T01 | MTR_4g115390 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1 | 224 | 2.19e-166 | 457 |
| MsG0880046820.01.T01 | MTR_5g089370 | 63.229 | 223 | 78 | 1 | 1 | 223 | 1 | 219 | 4.40e-108 | 310 |
| MsG0880046820.01.T01 | MTR_4g052550 | 51.802 | 222 | 103 | 1 | 1 | 222 | 1 | 218 | 2.05e-84 | 250 |
| MsG0880046820.01.T01 | MTR_1g111890 | 32.218 | 239 | 131 | 5 | 2 | 214 | 5 | 238 | 2.26e-39 | 135 |
| MsG0880046820.01.T01 | MTR_1g047720 | 31.944 | 216 | 140 | 3 | 3 | 216 | 6 | 216 | 2.51e-39 | 135 |
| MsG0880046820.01.T01 | MTR_7g058900 | 33.505 | 194 | 122 | 3 | 3 | 194 | 6 | 194 | 4.40e-36 | 127 |
| MsG0880046820.01.T01 | MTR_4g022570 | 31.944 | 216 | 140 | 3 | 3 | 216 | 6 | 216 | 2.00e-35 | 125 |
| MsG0880046820.01.T01 | MTR_2g028790 | 31.443 | 194 | 126 | 3 | 3 | 194 | 10 | 198 | 2.90e-33 | 119 |
| MsG0880046820.01.T01 | MTR_4g083490 | 30.256 | 195 | 127 | 4 | 3 | 194 | 8 | 196 | 4.92e-32 | 116 |
| MsG0880046820.01.T01 | MTR_2g436870 | 26.977 | 215 | 150 | 3 | 4 | 216 | 7 | 216 | 7.75e-31 | 113 |
| MsG0880046820.01.T01 | MTR_7g058640 | 27.835 | 194 | 133 | 3 | 3 | 194 | 6 | 194 | 5.08e-25 | 98.2 |
| MsG0880046820.01.T01 | MTR_1g047710 | 38.017 | 121 | 73 | 2 | 70 | 188 | 16 | 136 | 1.73e-22 | 89.4 |
| MsG0880046820.01.T01 | MTR_7g058640 | 30.114 | 176 | 116 | 4 | 3 | 176 | 6 | 176 | 1.01e-20 | 86.3 |
| MsG0880046820.01.T01 | MTR_4g022470 | 39.048 | 105 | 60 | 3 | 70 | 171 | 14 | 117 | 5.68e-17 | 74.3 |
| MsG0880046820.01.T01 | MTR_7g058640 | 27.586 | 116 | 82 | 2 | 81 | 194 | 1 | 116 | 7.25e-13 | 63.9 |
| MsG0880046820.01.T01 | MTR_4g105490 | 24.516 | 155 | 109 | 2 | 28 | 182 | 45 | 191 | 2.38e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046820.01.T01 | AT5G11150 | 64.286 | 224 | 77 | 2 | 1 | 224 | 1 | 221 | 1.04e-110 | 317 |
| MsG0880046820.01.T01 | AT5G11150 | 64.574 | 223 | 76 | 2 | 1 | 223 | 1 | 220 | 4.49e-110 | 315 |
| MsG0880046820.01.T01 | AT4G32150 | 65.766 | 222 | 72 | 1 | 1 | 222 | 1 | 218 | 1.23e-106 | 306 |
| MsG0880046820.01.T01 | AT2G25340 | 63.964 | 222 | 76 | 1 | 1 | 222 | 1 | 218 | 5.98e-101 | 292 |
| MsG0880046820.01.T01 | AT5G22360 | 50.450 | 222 | 107 | 1 | 1 | 222 | 1 | 219 | 2.45e-86 | 255 |
| MsG0880046820.01.T01 | AT1G04760 | 32.870 | 216 | 138 | 3 | 3 | 216 | 6 | 216 | 8.17e-38 | 131 |
| MsG0880046820.01.T01 | AT1G04760 | 32.870 | 216 | 138 | 3 | 3 | 216 | 6 | 216 | 8.17e-38 | 131 |
| MsG0880046820.01.T01 | AT3G54300 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| MsG0880046820.01.T01 | AT3G54300 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| MsG0880046820.01.T01 | AT3G54300 | 32.174 | 230 | 127 | 4 | 2 | 210 | 5 | 226 | 1.01e-37 | 132 |
| MsG0880046820.01.T01 | AT1G04750 | 31.481 | 216 | 141 | 3 | 3 | 216 | 6 | 216 | 2.66e-34 | 122 |
| MsG0880046820.01.T01 | AT2G32670 | 32.474 | 194 | 124 | 3 | 3 | 194 | 71 | 259 | 6.67e-34 | 123 |
| MsG0880046820.01.T01 | AT2G33120 | 31.443 | 194 | 126 | 3 | 3 | 194 | 6 | 194 | 2.51e-33 | 120 |
| MsG0880046820.01.T01 | AT2G33120 | 29.703 | 202 | 127 | 4 | 3 | 194 | 6 | 202 | 4.28e-30 | 111 |
| MsG0880046820.01.T01 | AT4G15780 | 29.508 | 183 | 116 | 4 | 4 | 184 | 7 | 178 | 2.18e-23 | 93.2 |
| MsG0880046820.01.T01 | AT2G33110 | 29.381 | 194 | 126 | 4 | 3 | 194 | 6 | 190 | 6.94e-23 | 92.8 |
| MsG0880046820.01.T01 | AT2G33110 | 32.099 | 162 | 103 | 3 | 3 | 162 | 6 | 162 | 7.20e-22 | 89.4 |
| MsG0880046820.01.T01 | AT1G04750 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| MsG0880046820.01.T01 | AT1G04750 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| MsG0880046820.01.T01 | AT1G04750 | 31.884 | 138 | 92 | 2 | 81 | 216 | 1 | 138 | 1.81e-18 | 79.0 |
| MsG0880046820.01.T01 | AT5G58060 | 24.627 | 134 | 99 | 1 | 49 | 182 | 60 | 191 | 5.60e-11 | 60.1 |
Find 55 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTCTTACTTGTATTTAT+TGG | 0.161741 | 8:+78746522 | MsG0880046820.01.T01:three_prime_UTR |
| GCAAGATACCCTATTGTATA+TGG | 0.199650 | 8:+78746616 | MsG0880046820.01.T01:three_prime_UTR |
| GTTGACCCAGTATACATTAT+TGG | 0.240608 | 8:-78746489 | None:intergenic |
| TATTCTTACTTGTATTTATT+GGG | 0.247517 | 8:+78746523 | MsG0880046820.01.T01:three_prime_UTR |
| AAGTGTAGCGGAATTGATTT+TGG | 0.249178 | 8:-78745243 | None:intergenic |
| GGCAAGGGGACAGGTTGTTT+TGG | 0.253676 | 8:+78745387 | MsG0880046820.01.T01:CDS |
| AAACGTGCACAAGCCTAAAA+TGG | 0.328667 | 8:-78746557 | None:intergenic |
| ATATCTTCAAGAAATGAAAA+TGG | 0.333891 | 8:-78745780 | None:intergenic |
| CGGTTTAATCTGTCAGCATT+TGG | 0.337061 | 8:-78745918 | None:intergenic |
| AATATATACCCATATACAAT+AGG | 0.350214 | 8:-78746625 | None:intergenic |
| TGGACTCACGGTTCTTTGTA+TGG | 0.360279 | 8:+78745552 | MsG0880046820.01.T01:CDS |
| GAATTCATCATTCATTGTAT+AGG | 0.373894 | 8:-78745853 | None:intergenic |
| ACATTTGGTGGAGTAATGTT+AGG | 0.390510 | 8:+78746234 | MsG0880046820.01.T01:CDS |
| TTCAGTTCGTTTCAAAAGAC+AGG | 0.411093 | 8:+78746193 | MsG0880046820.01.T01:CDS |
| GTTGGAGAGAGGTGGTCGTT+TGG | 0.415150 | 8:+78746133 | MsG0880046820.01.T01:CDS |
| ATCAATATGGGGATATTGTA+TGG | 0.437966 | 8:+78745358 | MsG0880046820.01.T01:exon |
| CTCAATGTTATCAATCATAA+CGG | 0.460143 | 8:-78746105 | None:intergenic |
| TGGAATGGTGGCAAGGGGAC+AGG | 0.468795 | 8:+78745378 | MsG0880046820.01.T01:CDS |
| CAAGATACCCTATTGTATAT+GGG | 0.485736 | 8:+78746617 | MsG0880046820.01.T01:three_prime_UTR |
| ATACTTGCATTTATGTGTCA+TGG | 0.486797 | 8:+78746387 | MsG0880046820.01.T01:CDS |
| ATACTTAATCAGATTAATCA+AGG | 0.489039 | 8:+78745457 | MsG0880046820.01.T01:CDS |
| TCATCATTCATTGTATAGGC+AGG | 0.492044 | 8:-78745849 | None:intergenic |
| AGGTGGTCGTTTGGAAATGC+TGG | 0.511827 | 8:+78746142 | MsG0880046820.01.T01:CDS |
| TAGAAAATTGTTACGCAATG+TGG | 0.521128 | 8:+78746580 | MsG0880046820.01.T01:three_prime_UTR |
| ATTGTATGGAATGGTGGCAA+GGG | 0.521454 | 8:+78745372 | MsG0880046820.01.T01:CDS |
| ATTGAGAAAGTGTTGGAGAG+AGG | 0.527753 | 8:+78746122 | MsG0880046820.01.T01:CDS |
| CTCCAGCACGAAGTCAGAAA+AGG | 0.530190 | 8:-78746411 | None:intergenic |
| ATATATACCCATATACAATA+GGG | 0.531262 | 8:-78746624 | None:intergenic |
| TATTGTATGGAATGGTGGCA+AGG | 0.543226 | 8:+78745371 | MsG0880046820.01.T01:CDS |
| AAGGGTCCTCAGCCAACAGA+TGG | 0.550516 | 8:+78745878 | MsG0880046820.01.T01:CDS |
| CAATGAATGATGAATTCTCA+AGG | 0.553713 | 8:+78745859 | MsG0880046820.01.T01:CDS |
| TGTATGGCTGATGAAGCATT+CGG | 0.564914 | 8:+78745568 | MsG0880046820.01.T01:CDS |
| TAGAGTAATAATCCATCTGT+TGG | 0.566521 | 8:-78745890 | None:intergenic |
| GGGGATATTGTATGGAATGG+TGG | 0.567746 | 8:+78745366 | MsG0880046820.01.T01:CDS |
| TTTCATGTTAGGAGAACCGA+TGG | 0.574207 | 8:+78745532 | MsG0880046820.01.T01:CDS |
| TGATAACATTGAGAAAGTGT+TGG | 0.575571 | 8:+78746115 | MsG0880046820.01.T01:CDS |
| TTTGACCAATAATGTATACT+GGG | 0.576344 | 8:+78746484 | MsG0880046820.01.T01:three_prime_UTR |
| GACAGATTAAACCGTCTCAA+AGG | 0.583346 | 8:+78745927 | MsG0880046820.01.T01:CDS |
| AGGAGCTGAAAGAATTGCAC+GGG | 0.584676 | 8:-78745829 | None:intergenic |
| GAGTCATTTCACCTTTGAGA+CGG | 0.596112 | 8:-78745938 | None:intergenic |
| AATAATCCATCTGTTGGCTG+AGG | 0.597408 | 8:-78745884 | None:intergenic |
| TATGGGGATATTGTATGGAA+TGG | 0.597713 | 8:+78745363 | MsG0880046820.01.T01:exon |
| GTGCTGGAGATAAGCTCTCA+AGG | 0.604752 | 8:+78746425 | MsG0880046820.01.T01:exon |
| TAATCTGTCAGCATTTGGAT+CGG | 0.609095 | 8:-78745913 | None:intergenic |
| ACAAAGAACCGTGAGTCCAT+CGG | 0.624255 | 8:-78745548 | None:intergenic |
| AATGAATGATGAATTCTCAA+GGG | 0.630979 | 8:+78745860 | MsG0880046820.01.T01:CDS |
| TCTCAAAGGTGAAATGACTC+AGG | 0.630982 | 8:+78745941 | MsG0880046820.01.T01:CDS |
| CAGGAGCTGAAAGAATTGCA+CGG | 0.634803 | 8:-78745830 | None:intergenic |
| TTGTATGGAATGGTGGCAAG+GGG | 0.640525 | 8:+78745373 | MsG0880046820.01.T01:CDS |
| GGGTCGTTGTTGTTGTTGCG+TGG | 0.641648 | 8:-78745277 | None:intergenic |
| TACTTAATCAGATTAATCAA+GGG | 0.641822 | 8:+78745458 | MsG0880046820.01.T01:CDS |
| GAGAAAGTGTTGGAGAGAGG+TGG | 0.644427 | 8:+78746125 | MsG0880046820.01.T01:CDS |
| TAGGAGAACCGATGGACTCA+CGG | 0.645185 | 8:+78745540 | MsG0880046820.01.T01:CDS |
| AAGTATAATATAAAAGACAA+TGG | 0.661950 | 8:-78746370 | None:intergenic |
| GCGAGAAGAGAAAAGTGTAG+CGG | 0.727333 | 8:-78745255 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACACAATCAATAAAAATA+AGG | - | Chr8:78745620-78745639 | None:intergenic | 15.0% |
| !! | AACACAATCAATAAAAATAA+GGG | - | Chr8:78745619-78745638 | None:intergenic | 15.0% |
| !! | AAGTATAATATAAAAGACAA+TGG | - | Chr8:78746373-78746392 | None:intergenic | 15.0% |
| !! | ATATTCTTACTTGTATTTAT+TGG | + | Chr8:78746522-78746541 | MsG0880046820.01.T01:three_prime_UTR | 15.0% |
| !! | ATCATACAACAAATATATTA+AGG | - | Chr8:78746066-78746085 | None:intergenic | 15.0% |
| !! | CATATCTTAATGTAAATAAA+TGG | - | Chr8:78746029-78746048 | None:intergenic | 15.0% |
| !! | GTTGTATGATAATTATATAT+AGG | + | Chr8:78746076-78746095 | MsG0880046820.01.T01:intron | 15.0% |
| !! | TATTCTTACTTGTATTTATT+GGG | + | Chr8:78746523-78746542 | MsG0880046820.01.T01:three_prime_UTR | 15.0% |
| !!! | TTATTTTTATTGATTGTGTT+TGG | + | Chr8:78745619-78745638 | MsG0880046820.01.T01:intron | 15.0% |
| !! | AATATATACCCATATACAAT+AGG | - | Chr8:78746628-78746647 | None:intergenic | 20.0% |
| !! | ATACTTAATCAGATTAATCA+AGG | + | Chr8:78745457-78745476 | MsG0880046820.01.T01:CDS | 20.0% |
| !! | ATATATACCCATATACAATA+GGG | - | Chr8:78746627-78746646 | None:intergenic | 20.0% |
| !! | ATATCTTCAAGAAATGAAAA+TGG | - | Chr8:78745783-78745802 | None:intergenic | 20.0% |
| !! | GATATAAAAATAACATTTGG+TGG | + | Chr8:78746222-78746241 | MsG0880046820.01.T01:CDS | 20.0% |
| !! | GTCGATATAAAAATAACATT+TGG | + | Chr8:78746219-78746238 | MsG0880046820.01.T01:CDS | 20.0% |
| !! | TACTTAATCAGATTAATCAA+GGG | + | Chr8:78745458-78745477 | MsG0880046820.01.T01:CDS | 20.0% |
| !! | TTAGCATACAACATAATATT+TGG | - | Chr8:78745681-78745700 | None:intergenic | 20.0% |
| !!! | TGAGATTTTTTGAAAGTTTA+AGG | - | Chr8:78745307-78745326 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGTTTAAGGTAAA+GGG | - | Chr8:78745300-78745319 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAGTTTAAGGTAA+AGG | - | Chr8:78745301-78745320 | None:intergenic | 20.0% |
| ! | AAGTGTCAATTTCTAAATGT+TGG | + | Chr8:78746264-78746283 | MsG0880046820.01.T01:intron | 25.0% |
| ! | AATGAATGATGAATTCTCAA+GGG | + | Chr8:78745860-78745879 | MsG0880046820.01.T01:CDS | 25.0% |
| ! | AGTGTCAATTTCTAAATGTT+GGG | + | Chr8:78746265-78746284 | MsG0880046820.01.T01:intron | 25.0% |
| ! | ATATCTATCTTCTTTATGCA+GGG | + | Chr8:78746326-78746345 | MsG0880046820.01.T01:intron | 25.0% |
| ! | CTCAATGTTATCAATCATAA+CGG | - | Chr8:78746108-78746127 | None:intergenic | 25.0% |
| ! | GAATTCATCATTCATTGTAT+AGG | - | Chr8:78745856-78745875 | None:intergenic | 25.0% |
| ! | TATGAAAAAAAGTTGAATGC+TGG | + | Chr8:78745992-78746011 | MsG0880046820.01.T01:intron | 25.0% |
| ! | TTTGACCAATAATGTATACT+GGG | + | Chr8:78746484-78746503 | MsG0880046820.01.T01:three_prime_UTR | 25.0% |
| !! | ATCGTTATGTTTTTCATGTT+AGG | + | Chr8:78745521-78745540 | MsG0880046820.01.T01:CDS | 25.0% |
| !! | TATTGATTGTGTTTGGAATT+TGG | + | Chr8:78745626-78745645 | MsG0880046820.01.T01:intron | 25.0% |
| !! | TTTTGACCAATAATGTATAC+TGG | + | Chr8:78746483-78746502 | MsG0880046820.01.T01:three_prime_UTR | 25.0% |
| ATACTTGCATTTATGTGTCA+TGG | + | Chr8:78746387-78746406 | MsG0880046820.01.T01:CDS | 30.0% | |
| ATCAATATGGGGATATTGTA+TGG | + | Chr8:78745358-78745377 | MsG0880046820.01.T01:exon | 30.0% | |
| CAAGATACCCTATTGTATAT+GGG | + | Chr8:78746617-78746636 | MsG0880046820.01.T01:three_prime_UTR | 30.0% | |
| CAATGAATGATGAATTCTCA+AGG | + | Chr8:78745859-78745878 | MsG0880046820.01.T01:CDS | 30.0% | |
| CATATCTATCTTCTTTATGC+AGG | + | Chr8:78746325-78746344 | MsG0880046820.01.T01:intron | 30.0% | |
| GTGTCAATTTCTAAATGTTG+GGG | + | Chr8:78746266-78746285 | MsG0880046820.01.T01:intron | 30.0% | |
| TAGAAAATTGTTACGCAATG+TGG | + | Chr8:78746580-78746599 | MsG0880046820.01.T01:three_prime_UTR | 30.0% | |
| TAGAGTAATAATCCATCTGT+TGG | - | Chr8:78745893-78745912 | None:intergenic | 30.0% | |
| TTCACACATAACATTTGTTC+AGG | - | Chr8:78745743-78745762 | None:intergenic | 30.0% | |
| ! | ATTGTGTTTGGAATTTGGAT+TGG | + | Chr8:78745631-78745650 | MsG0880046820.01.T01:intron | 30.0% |
| ! | GGATACAATGTTACCATTTT+AGG | + | Chr8:78746544-78746563 | MsG0880046820.01.T01:three_prime_UTR | 30.0% |
| ! | TGATAACATTGAGAAAGTGT+TGG | + | Chr8:78746115-78746134 | MsG0880046820.01.T01:CDS | 30.0% |
| GCAAGATACCCTATTGTATA+TGG | + | Chr8:78746616-78746635 | MsG0880046820.01.T01:three_prime_UTR | 35.0% | |
| GTTGACCCAGTATACATTAT+TGG | - | Chr8:78746492-78746511 | None:intergenic | 35.0% | |
| TAATCTGTCAGCATTTGGAT+CGG | - | Chr8:78745916-78745935 | None:intergenic | 35.0% | |
| TATGGGGATATTGTATGGAA+TGG | + | Chr8:78745363-78745382 | MsG0880046820.01.T01:exon | 35.0% | |
| TCATCATTCATTGTATAGGC+AGG | - | Chr8:78745852-78745871 | None:intergenic | 35.0% | |
| TGGGTATATATTGACGATTC+AGG | + | Chr8:78746636-78746655 | MsG0880046820.01.T01:three_prime_UTR | 35.0% | |
| TTCAGTTCGTTTCAAAAGAC+AGG | + | Chr8:78746193-78746212 | MsG0880046820.01.T01:CDS | 35.0% | |
| ! | ACATTTGGTGGAGTAATGTT+AGG | + | Chr8:78746234-78746253 | MsG0880046820.01.T01:CDS | 35.0% |
| ! | CATTTGTTCAGGTTCATTCA+AGG | - | Chr8:78745732-78745751 | None:intergenic | 35.0% |
| !! | AAGTGTAGCGGAATTGATTT+TGG | - | Chr8:78745246-78745265 | None:intergenic | 35.0% |
| !! | ACGTGTTTTGAGCATCAATA+TGG | + | Chr8:78745345-78745364 | MsG0880046820.01.T01:exon | 35.0% |
| !! | CGTGTTTTGAGCATCAATAT+GGG | + | Chr8:78745346-78745365 | MsG0880046820.01.T01:exon | 35.0% |
| !! | GTGTTTTGAGCATCAATATG+GGG | + | Chr8:78745347-78745366 | MsG0880046820.01.T01:exon | 35.0% |
| AAACGTGCACAAGCCTAAAA+TGG | - | Chr8:78746560-78746579 | None:intergenic | 40.0% | |
| ATTGTATGGAATGGTGGCAA+GGG | + | Chr8:78745372-78745391 | MsG0880046820.01.T01:CDS | 40.0% | |
| CGGTTTAATCTGTCAGCATT+TGG | - | Chr8:78745921-78745940 | None:intergenic | 40.0% | |
| GACAGATTAAACCGTCTCAA+AGG | + | Chr8:78745927-78745946 | MsG0880046820.01.T01:CDS | 40.0% | |
| TATTGTATGGAATGGTGGCA+AGG | + | Chr8:78745371-78745390 | MsG0880046820.01.T01:CDS | 40.0% | |
| TCTCAAAGGTGAAATGACTC+AGG | + | Chr8:78745941-78745960 | MsG0880046820.01.T01:CDS | 40.0% | |
| TGTTATGTGTGAATGACTGC+AGG | + | Chr8:78745750-78745769 | MsG0880046820.01.T01:intron | 40.0% | |
| TTTCATGTTAGGAGAACCGA+TGG | + | Chr8:78745532-78745551 | MsG0880046820.01.T01:CDS | 40.0% | |
| ! | AATAATCCATCTGTTGGCTG+AGG | - | Chr8:78745887-78745906 | None:intergenic | 40.0% |
| ! | GAGTCATTTCACCTTTGAGA+CGG | - | Chr8:78745941-78745960 | None:intergenic | 40.0% |
| ! | TGTATGGCTGATGAAGCATT+CGG | + | Chr8:78745568-78745587 | MsG0880046820.01.T01:CDS | 40.0% |
| ! | TGTTCAGGTTCATTCAAGGA+TGG | - | Chr8:78745728-78745747 | None:intergenic | 40.0% |
| !! | ATTGAGAAAGTGTTGGAGAG+AGG | + | Chr8:78746122-78746141 | MsG0880046820.01.T01:CDS | 40.0% |
| !! | TGTAGCGGAATTGATTTTGG+AGG | - | Chr8:78745243-78745262 | None:intergenic | 40.0% |
| ACAAAGAACCGTGAGTCCAT+CGG | - | Chr8:78745551-78745570 | None:intergenic | 45.0% | |
| AGGAGCTGAAAGAATTGCAC+GGG | - | Chr8:78745832-78745851 | None:intergenic | 45.0% | |
| ATGTGTGAATGACTGCAGGA+AGG | + | Chr8:78745754-78745773 | MsG0880046820.01.T01:intron | 45.0% | |
| CAGGAGCTGAAAGAATTGCA+CGG | - | Chr8:78745833-78745852 | None:intergenic | 45.0% | |
| GGGGATATTGTATGGAATGG+TGG | + | Chr8:78745366-78745385 | MsG0880046820.01.T01:CDS | 45.0% | |
| TGGACTCACGGTTCTTTGTA+TGG | + | Chr8:78745552-78745571 | MsG0880046820.01.T01:CDS | 45.0% | |
| TTGTATGGAATGGTGGCAAG+GGG | + | Chr8:78745373-78745392 | MsG0880046820.01.T01:CDS | 45.0% | |
| ! | GCGAGAAGAGAAAAGTGTAG+CGG | - | Chr8:78745258-78745277 | None:intergenic | 45.0% |
| !! | AGCGGAATTGATTTTGGAGG+AGG | - | Chr8:78745240-78745259 | None:intergenic | 45.0% |
| AGGTGGTCGTTTGGAAATGC+TGG | + | Chr8:78746142-78746161 | MsG0880046820.01.T01:CDS | 50.0% | |
| CTCCAGCACGAAGTCAGAAA+AGG | - | Chr8:78746414-78746433 | None:intergenic | 50.0% | |
| GTGCTGGAGATAAGCTCTCA+AGG | + | Chr8:78746425-78746444 | MsG0880046820.01.T01:exon | 50.0% | |
| ! | GTCCTTTTCTGACTTCGTGC+TGG | + | Chr8:78746409-78746428 | MsG0880046820.01.T01:CDS | 50.0% |
| ! | TAGGAGAACCGATGGACTCA+CGG | + | Chr8:78745540-78745559 | MsG0880046820.01.T01:CDS | 50.0% |
| !! | GAGAAAGTGTTGGAGAGAGG+TGG | + | Chr8:78746125-78746144 | MsG0880046820.01.T01:CDS | 50.0% |
| AAGGGTCCTCAGCCAACAGA+TGG | + | Chr8:78745878-78745897 | MsG0880046820.01.T01:CDS | 55.0% | |
| GTTGGAGAGAGGTGGTCGTT+TGG | + | Chr8:78746133-78746152 | MsG0880046820.01.T01:CDS | 55.0% | |
| ! | GGCAAGGGGACAGGTTGTTT+TGG | + | Chr8:78745387-78745406 | MsG0880046820.01.T01:CDS | 55.0% |
| ! | GGGTCGTTGTTGTTGTTGCG+TGG | - | Chr8:78745280-78745299 | None:intergenic | 55.0% |
| TGGAATGGTGGCAAGGGGAC+AGG | + | Chr8:78745378-78745397 | MsG0880046820.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 78745218 | 78746655 | 78745218 | ID=MsG0880046820.01;Name=MsG0880046820.01 |
| Chr8 | mRNA | 78745218 | 78746655 | 78745218 | ID=MsG0880046820.01.T01;Parent=MsG0880046820.01;Name=MsG0880046820.01.T01;_AED=0.49;_eAED=0.49;_QI=146|1|1|1|1|1|4|218|224 |
| Chr8 | exon | 78745218 | 78745592 | 78745218 | ID=MsG0880046820.01.T01:exon:18894;Parent=MsG0880046820.01.T01 |
| Chr8 | exon | 78745772 | 78745962 | 78745772 | ID=MsG0880046820.01.T01:exon:18895;Parent=MsG0880046820.01.T01 |
| Chr8 | exon | 78746098 | 78746261 | 78746098 | ID=MsG0880046820.01.T01:exon:18896;Parent=MsG0880046820.01.T01 |
| Chr8 | exon | 78746347 | 78746655 | 78746347 | ID=MsG0880046820.01.T01:exon:18897;Parent=MsG0880046820.01.T01 |
| Chr8 | five_prime_UTR | 78745218 | 78745363 | 78745218 | ID=MsG0880046820.01.T01:five_prime_utr;Parent=MsG0880046820.01.T01 |
| Chr8 | CDS | 78745364 | 78745592 | 78745364 | ID=MsG0880046820.01.T01:cds;Parent=MsG0880046820.01.T01 |
| Chr8 | CDS | 78745772 | 78745962 | 78745772 | ID=MsG0880046820.01.T01:cds;Parent=MsG0880046820.01.T01 |
| Chr8 | CDS | 78746098 | 78746261 | 78746098 | ID=MsG0880046820.01.T01:cds;Parent=MsG0880046820.01.T01 |
| Chr8 | CDS | 78746347 | 78746437 | 78746347 | ID=MsG0880046820.01.T01:cds;Parent=MsG0880046820.01.T01 |
| Chr8 | three_prime_UTR | 78746438 | 78746655 | 78746438 | ID=MsG0880046820.01.T01:three_prime_utr;Parent=MsG0880046820.01.T01 |
| Gene Sequence |
| Protein sequence |
