Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041259.01.T01 | XP_003625864.1 | 95.812 | 191 | 7 | 1 | 1 | 190 | 1 | 191 | 5.21E-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041259.01.T01 | A7NW78 | 46.316 | 190 | 93 | 3 | 4 | 185 | 4 | 192 | 1.53E-51 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041259.01.T01 | G7KQZ0 | 95.812 | 191 | 7 | 1 | 1 | 190 | 1 | 191 | 2.49e-128 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0780041259.01 | 0.892917 | 1.019275e-74 | 9.505877e-71 |
| MsG0080048152.01 | MsG0780041259.01 | 0.835863 | 1.309466e-56 | 1.621795e-53 |
| MsG0080048320.01 | MsG0780041259.01 | 0.802594 | 5.208532e-49 | 2.561625e-46 |
| MsG0080048357.01 | MsG0780041259.01 | 0.869689 | 2.565114e-66 | 9.712739e-63 |
| MsG0180000036.01 | MsG0780041259.01 | 0.815067 | 1.117959e-51 | 7.629681e-49 |
| MsG0180000038.01 | MsG0780041259.01 | 0.845504 | 3.897437e-59 | 6.508645e-56 |
| MsG0180000205.01 | MsG0780041259.01 | 0.805639 | 1.211523e-49 | 6.442850e-47 |
| MsG0180000404.01 | MsG0780041259.01 | 0.893777 | 4.582809e-75 | 4.431749e-71 |
| MsG0180000782.01 | MsG0780041259.01 | 0.831577 | 1.542550e-55 | 1.681050e-52 |
| MsG0180001771.01 | MsG0780041259.01 | 0.853900 | 1.759792e-61 | 3.861339e-58 |
| MsG0180003094.01 | MsG0780041259.01 | 0.819465 | 1.145048e-52 | 8.818410e-50 |
| MsG0180003548.01 | MsG0780041259.01 | 0.817075 | 3.980309e-52 | 2.869956e-49 |
| MsG0180003572.01 | MsG0780041259.01 | 0.828243 | 1.001612e-54 | 9.899217e-52 |
| MsG0180003741.01 | MsG0780041259.01 | 0.934606 | 3.111296e-96 | 2.377101e-91 |
| MsG0180004249.01 | MsG0780041259.01 | 0.800607 | 1.331572e-48 | 6.226756e-46 |
| MsG0180004497.01 | MsG0780041259.01 | 0.828052 | 1.114128e-54 | 1.095032e-51 |
| MsG0180004605.01 | MsG0780041259.01 | -0.835969 | 1.231107e-56 | 1.529631e-53 |
| MsG0180004743.01 | MsG0780041259.01 | 0.805268 | 1.448653e-49 | 7.630613e-47 |
| MsG0180004765.01 | MsG0780041259.01 | 0.805377 | 1.374595e-49 | 7.260982e-47 |
| MsG0180004854.01 | MsG0780041259.01 | 0.808559 | 2.918491e-50 | 1.673981e-47 |
| MsG0180005031.01 | MsG0780041259.01 | 0.805031 | 1.624434e-49 | 8.504472e-47 |
| MsG0180005113.01 | MsG0780041259.01 | 0.868720 | 5.295513e-66 | 1.935586e-62 |
| MsG0180005153.01 | MsG0780041259.01 | 0.864354 | 1.291862e-64 | 4.044092e-61 |
| MsG0180005524.01 | MsG0780041259.01 | 0.803998 | 2.667938e-49 | 1.360179e-46 |
| MsG0180005540.01 | MsG0780041259.01 | 0.828817 | 7.278968e-55 | 7.315020e-52 |
| MsG0180005575.01 | MsG0780041259.01 | 0.815768 | 7.803428e-52 | 5.429455e-49 |
| MsG0180006017.01 | MsG0780041259.01 | 0.831728 | 1.415637e-55 | 1.549741e-52 |
| MsG0780040286.01 | MsG0780041259.01 | 0.887323 | 1.578867e-72 | 1.168623e-68 |
| MsG0780040287.01 | MsG0780041259.01 | 0.866148 | 3.522478e-65 | 1.175152e-61 |
| MsG0780040430.01 | MsG0780041259.01 | 0.845165 | 4.815552e-59 | 7.954497e-56 |
| MsG0780040431.01 | MsG0780041259.01 | 0.831108 | 2.012416e-55 | 2.162440e-52 |
| MsG0780040432.01 | MsG0780041259.01 | 0.805723 | 1.163137e-49 | 6.199327e-47 |
| MsG0780040846.01 | MsG0780041259.01 | 0.892911 | 1.025495e-74 | 9.560611e-71 |
| MsG0780040855.01 | MsG0780041259.01 | 0.846270 | 2.412872e-59 | 4.130354e-56 |
| MsG0780040966.01 | MsG0780041259.01 | 0.843252 | 1.570822e-58 | 2.443261e-55 |
| MsG0780041259.01 | MsG0780041391.01 | 0.814574 | 1.437368e-51 | 9.680384e-49 |
| MsG0780041259.01 | MsG0780041440.01 | 0.815167 | 1.062153e-51 | 7.268216e-49 |
| MsG0780041259.01 | MsG0780041448.01 | 0.821289 | 4.370239e-53 | 3.540650e-50 |
| MsG0780041259.01 | MsG0780041698.01 | 0.901849 | 1.766811e-78 | 2.432761e-74 |
| MsG0780041259.01 | MsG0780041699.01 | 0.873965 | 9.767078e-68 | 4.319636e-64 |
| MsG0780041259.01 | MsG0880041834.01 | 0.849847 | 2.485567e-60 | 4.775361e-57 |
| MsG0780041259.01 | MsG0880041858.01 | 0.826608 | 2.471585e-54 | 2.328996e-51 |
| MsG0780041259.01 | MsG0880042442.01 | 0.819122 | 1.371079e-52 | 1.045852e-49 |
| MsG0780041259.01 | MsG0880042734.01 | 0.813031 | 3.144946e-51 | 2.031163e-48 |
| MsG0780041259.01 | MsG0880042958.01 | 0.893446 | 6.237089e-75 | 5.942989e-71 |
| MsG0780041259.01 | MsG0880042959.01 | 0.852671 | 3.960680e-61 | 8.338558e-58 |
| MsG0780041259.01 | MsG0880043174.01 | 0.801538 | 8.588037e-49 | 4.111703e-46 |
| MsG0780041259.01 | MsG0880043755.01 | 0.827890 | 1.218495e-54 | 1.191920e-51 |
| MsG0780041259.01 | MsG0880044229.01 | 0.802604 | 5.185530e-49 | 2.550853e-46 |
| MsG0780041259.01 | MsG0880044704.01 | 0.888224 | 7.137737e-73 | 5.480619e-69 |
| MsG0780041259.01 | MsG0880044975.01 | 0.833930 | 4.018680e-56 | 4.697305e-53 |
| MsG0780041259.01 | MsG0880045145.01 | 0.827950 | 1.178521e-54 | 1.154873e-51 |
| MsG0780041259.01 | MsG0880045495.01 | 0.817622 | 2.997514e-52 | 2.193921e-49 |
| MsG0780041259.01 | MsG0880045585.01 | 0.866720 | 2.318733e-65 | 7.894126e-62 |
| MsG0780041259.01 | MsG0880045586.01 | 0.855532 | 5.924269e-62 | 1.371991e-58 |
| MsG0780041259.01 | MsG0880046457.01 | 0.804129 | 2.504605e-49 | 1.281172e-46 |
| MsG0780041259.01 | MsG0880046636.01 | 0.807642 | 4.575846e-50 | 2.562127e-47 |
| MsG0780041259.01 | MsG0880046820.01 | 0.802036 | 6.787675e-49 | 3.291023e-46 |
| MsG0780041259.01 | MsG0880046942.01 | 0.838972 | 2.093457e-57 | 2.849850e-54 |
| MsG0280010841.01 | MsG0780041259.01 | 0.804055 | 2.595678e-49 | 1.325296e-46 |
| MsG0380011496.01 | MsG0780041259.01 | 0.862034 | 6.742891e-64 | 1.946895e-60 |
| MsG0380011501.01 | MsG0780041259.01 | 0.854015 | 1.630389e-61 | 3.591185e-58 |
| MsG0380011675.01 | MsG0780041259.01 | 0.808643 | 2.800666e-50 | 1.609854e-47 |
| MsG0680030784.01 | MsG0780041259.01 | 0.882767 | 7.904521e-71 | 4.877388e-67 |
| MsG0680030856.01 | MsG0780041259.01 | 0.821352 | 4.225709e-53 | 3.429633e-50 |
| MsG0680030908.01 | MsG0780041259.01 | 0.839383 | 1.637829e-57 | 2.258116e-54 |
| MsG0680031342.01 | MsG0780041259.01 | 0.808057 | 3.733655e-50 | 2.113431e-47 |
| MsG0680031621.01 | MsG0780041259.01 | 0.828091 | 1.089798e-54 | 1.072369e-51 |
| MsG0680031628.01 | MsG0780041259.01 | 0.814651 | 1.382194e-51 | 9.327906e-49 |
| MsG0680031707.01 | MsG0780041259.01 | 0.853541 | 2.232383e-61 | 4.840108e-58 |
| MsG0680031959.01 | MsG0780041259.01 | 0.893327 | 6.967431e-75 | 6.607406e-71 |
| MsG0680034750.01 | MsG0780041259.01 | 0.828207 | 1.022137e-54 | 1.009190e-51 |
| MsG0680034835.01 | MsG0780041259.01 | 0.804580 | 2.017800e-49 | 1.044186e-46 |
| MsG0480018909.01 | MsG0780041259.01 | 0.811092 | 8.322577e-51 | 5.104972e-48 |
| MsG0480019221.01 | MsG0780041259.01 | 0.802115 | 6.537780e-49 | 3.176214e-46 |
| MsG0480019279.01 | MsG0780041259.01 | 0.859066 | 5.348810e-63 | 1.394430e-59 |
| MsG0480019340.01 | MsG0780041259.01 | 0.810468 | 1.135567e-50 | 6.850497e-48 |
| MsG0480020064.01 | MsG0780041259.01 | 0.807559 | 4.763842e-50 | 2.661669e-47 |
| MsG0480020096.01 | MsG0780041259.01 | 0.813273 | 2.781958e-51 | 1.808565e-48 |
| MsG0480020315.01 | MsG0780041259.01 | 0.839928 | 1.181461e-57 | 1.656515e-54 |
| MsG0480020517.01 | MsG0780041259.01 | 0.839691 | 1.362128e-57 | 1.895592e-54 |
| MsG0480020890.01 | MsG0780041259.01 | 0.804903 | 1.727914e-49 | 9.017545e-47 |
| MsG0480021037.01 | MsG0780041259.01 | 0.802914 | 4.474951e-49 | 2.218813e-46 |
| MsG0480021195.01 | MsG0780041259.01 | 0.823571 | 1.289623e-53 | 1.114568e-50 |
| MsG0480021814.01 | MsG0780041259.01 | 0.819418 | 1.173356e-52 | 9.024466e-50 |
| MsG0480021815.01 | MsG0780041259.01 | 0.802376 | 5.778550e-49 | 2.826275e-46 |
| MsG0480021922.01 | MsG0780041259.01 | 0.816839 | 4.496808e-52 | 3.221566e-49 |
| MsG0480022223.01 | MsG0780041259.01 | 0.814679 | 1.362433e-51 | 9.201440e-49 |
| MsG0480022586.01 | MsG0780041259.01 | 0.825614 | 4.258632e-54 | 3.901216e-51 |
| MsG0480022672.01 | MsG0780041259.01 | 0.806651 | 7.416186e-50 | 4.047005e-47 |
| MsG0480022696.01 | MsG0780041259.01 | 0.804449 | 2.148740e-49 | 1.108192e-46 |
| MsG0480023221.01 | MsG0780041259.01 | 0.817346 | 3.458442e-52 | 2.512274e-49 |
| MsG0480024022.01 | MsG0780041259.01 | 0.865708 | 4.852361e-65 | 1.594055e-61 |
| MsG0580024443.01 | MsG0780041259.01 | 0.862169 | 6.128907e-64 | 1.778227e-60 |
| MsG0580024619.01 | MsG0780041259.01 | 0.833753 | 4.449565e-56 | 5.172768e-53 |
| MsG0580024966.01 | MsG0780041259.01 | 0.871038 | 9.262670e-67 | 3.682380e-63 |
| MsG0580025449.01 | MsG0780041259.01 | 0.833947 | 3.980359e-56 | 4.654893e-53 |
| MsG0580025466.01 | MsG0780041259.01 | 0.856103 | 4.033944e-62 | 9.521413e-59 |
| MsG0580025607.01 | MsG0780041259.01 | 0.862767 | 4.013734e-64 | 1.189145e-60 |
| MsG0580025668.01 | MsG0780041259.01 | 0.840325 | 9.304722e-58 | 1.320699e-54 |
| MsG0580025828.01 | MsG0780041259.01 | 0.817413 | 3.341339e-52 | 2.431729e-49 |
| MsG0580025973.01 | MsG0780041259.01 | 0.848340 | 6.523720e-60 | 1.193421e-56 |
| MsG0580025974.01 | MsG0780041259.01 | 0.857122 | 2.024273e-62 | 4.943269e-59 |
| MsG0580026000.01 | MsG0780041259.01 | 0.816949 | 4.247623e-52 | 3.052447e-49 |
| MsG0380014926.01 | MsG0780041259.01 | 0.801035 | 1.088814e-48 | 5.147454e-46 |
| MsG0380016465.01 | MsG0780041259.01 | 0.856643 | 2.800641e-62 | 6.729246e-59 |
| MsG0380016612.01 | MsG0780041259.01 | 0.805545 | 1.267522e-49 | 6.724235e-47 |
| MsG0380016671.01 | MsG0780041259.01 | 0.807561 | 4.759645e-50 | 2.659444e-47 |
| MsG0380016710.01 | MsG0780041259.01 | 0.827613 | 1.420299e-54 | 1.377981e-51 |
| MsG0380016860.01 | MsG0780041259.01 | 0.810376 | 1.188487e-50 | 7.152232e-48 |
| MsG0380017087.01 | MsG0780041259.01 | 0.809707 | 1.656477e-50 | 9.795589e-48 |
| MsG0380017351.01 | MsG0780041259.01 | 0.802862 | 4.585725e-49 | 2.270765e-46 |
| MsG0380018033.01 | MsG0780041259.01 | 0.813091 | 3.050704e-51 | 1.973370e-48 |
| MsG0480018200.01 | MsG0780041259.01 | 0.869072 | 4.071880e-66 | 1.507655e-62 |
| MsG0480018423.01 | MsG0780041259.01 | 0.805054 | 1.606544e-49 | 8.416096e-47 |
| MsG0580026179.01 | MsG0780041259.01 | 0.835519 | 1.601040e-56 | 1.962526e-53 |
| MsG0580026485.01 | MsG0780041259.01 | 0.818971 | 1.483626e-52 | 1.127146e-49 |
| MsG0580027655.01 | MsG0780041259.01 | 0.814470 | 1.516087e-51 | 1.018211e-48 |
| MsG0580027763.01 | MsG0780041259.01 | 0.830621 | 2.649215e-55 | 2.806124e-52 |
| MsG0580027826.01 | MsG0780041259.01 | 0.806592 | 7.633158e-50 | 4.159294e-47 |
| MsG0580027925.01 | MsG0780041259.01 | 0.875655 | 2.596373e-68 | 1.222245e-64 |
| MsG0580028436.01 | MsG0780041259.01 | 0.815208 | 1.040170e-51 | 7.125749e-49 |
| MsG0580028960.01 | MsG0780041259.01 | 0.853903 | 1.756043e-61 | 3.853499e-58 |
| MsG0580028987.01 | MsG0780041259.01 | 0.806161 | 9.408612e-50 | 5.070990e-47 |
| MsG0580029310.01 | MsG0780041259.01 | 0.919935 | 2.413040e-87 | 7.955632e-83 |
| MsG0580029417.01 | MsG0780041259.01 | 0.826364 | 2.824931e-54 | 2.643726e-51 |
| MsG0580029418.01 | MsG0780041259.01 | 0.839207 | 1.819601e-57 | 2.495068e-54 |
| MsG0580029736.01 | MsG0780041259.01 | 0.855848 | 4.788259e-62 | 1.120663e-58 |
| MsG0580030010.01 | MsG0780041259.01 | 0.801825 | 7.501127e-49 | 3.617530e-46 |
| MsG0680030328.01 | MsG0780041259.01 | 0.871557 | 6.242242e-67 | 2.528976e-63 |
| MsG0680030329.01 | MsG0780041259.01 | 0.804511 | 2.086164e-49 | 1.077591e-46 |
| MsG0280006593.01 | MsG0780041259.01 | 0.803080 | 4.135517e-49 | 2.059046e-46 |
| MsG0280006937.01 | MsG0780041259.01 | 0.816699 | 4.834406e-52 | 3.449984e-49 |
| MsG0280006966.01 | MsG0780041259.01 | 0.811171 | 8.000596e-51 | 4.917523e-48 |
| MsG0280006993.01 | MsG0780041259.01 | 0.810651 | 1.036872e-50 | 6.285810e-48 |
| MsG0280007062.01 | MsG0780041259.01 | 0.802946 | 4.407639e-49 | 2.187127e-46 |
| MsG0280007197.01 | MsG0780041259.01 | 0.820813 | 5.625263e-53 | 4.497603e-50 |
| MsG0280007305.01 | MsG0780041259.01 | 0.838464 | 2.831963e-57 | 3.796207e-54 |
| MsG0280007432.01 | MsG0780041259.01 | 0.833439 | 5.329041e-56 | 6.137516e-53 |
| MsG0280007452.01 | MsG0780041259.01 | 0.810017 | 1.420542e-50 | 8.469408e-48 |
| MsG0280007506.01 | MsG0780041259.01 | 0.861179 | 1.230693e-63 | 3.451208e-60 |
| MsG0280007750.01 | MsG0780041259.01 | 0.809175 | 2.154455e-50 | 1.256125e-47 |
| MsG0280007955.01 | MsG0780041259.01 | 0.824240 | 8.986362e-54 | 7.914475e-51 |
| MsG0280008108.01 | MsG0780041259.01 | 0.800042 | 1.735397e-48 | 7.999464e-46 |
| MsG0280008390.01 | MsG0780041259.01 | 0.877632 | 5.377725e-69 | 2.722999e-65 |
| MsG0280008391.01 | MsG0780041259.01 | 0.878960 | 1.839595e-69 | 9.795012e-66 |
| MsG0280008392.01 | MsG0780041259.01 | 0.858995 | 5.617317e-63 | 1.461090e-59 |
| MsG0280008395.01 | MsG0780041259.01 | 0.870021 | 1.998043e-66 | 7.656845e-63 |
| MsG0280008397.01 | MsG0780041259.01 | 0.818305 | 2.101217e-52 | 1.567054e-49 |
| MsG0280008418.01 | MsG0780041259.01 | 0.829068 | 6.329028e-55 | 6.407125e-52 |
| MsG0280008457.01 | MsG0780041259.01 | 0.800003 | 1.766966e-48 | 8.137063e-46 |
| MsG0280009920.01 | MsG0780041259.01 | 0.817766 | 2.780734e-52 | 2.043443e-49 |
| MsG0280010320.01 | MsG0780041259.01 | 0.823433 | 1.388525e-53 | 1.195359e-50 |
| MsG0280010489.01 | MsG0780041259.01 | 0.827926 | 1.194439e-54 | 1.169594e-51 |
| MsG0680035658.01 | MsG0780041259.01 | 0.821832 | 3.274416e-53 | 2.693761e-50 |
| MsG0680035888.01 | MsG0780041259.01 | 0.800945 | 1.135850e-48 | 5.357494e-46 |
| MsG0780035992.01 | MsG0780041259.01 | 0.810026 | 1.414428e-50 | 8.434799e-48 |
| MsG0780036078.01 | MsG0780041259.01 | 0.802679 | 5.002995e-49 | 2.465775e-46 |
| MsG0780036307.01 | MsG0780041259.01 | 0.843139 | 1.684146e-58 | 2.609935e-55 |
| MsG0780036757.01 | MsG0780041259.01 | 0.804079 | 2.565562e-49 | 1.310718e-46 |
| MsG0780036899.01 | MsG0780041259.01 | 0.808821 | 2.565783e-50 | 1.481777e-47 |
| MsG0780036979.01 | MsG0780041259.01 | 0.803229 | 3.850510e-49 | 1.924590e-46 |
| MsG0780037093.01 | MsG0780041259.01 | 0.839381 | 1.639026e-57 | 2.259670e-54 |
| MsG0780037240.01 | MsG0780041259.01 | 0.806566 | 7.728529e-50 | 4.208654e-47 |
| MsG0780037341.01 | MsG0780041259.01 | 0.860516 | 1.955732e-63 | 5.360071e-60 |
| MsG0780037395.01 | MsG0780041259.01 | 0.848187 | 7.190459e-60 | 1.308743e-56 |
| MsG0780038048.01 | MsG0780041259.01 | 0.822460 | 2.340627e-53 | 1.960355e-50 |
| MsG0780038846.01 | MsG0780041259.01 | 0.821186 | 4.615568e-53 | 3.729014e-50 |
| MsG0780038847.01 | MsG0780041259.01 | 0.850643 | 1.487160e-60 | 2.932707e-57 |
| MsG0780038948.01 | MsG0780041259.01 | 0.838471 | 2.820143e-57 | 3.781175e-54 |
| MsG0780039369.01 | MsG0780041259.01 | 0.805446 | 1.329669e-49 | 7.036069e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041259.01.T01 | MTR_7g108130 | 95.812 | 191 | 7 | 1 | 1 | 190 | 1 | 191 | 6.31e-132 | 368 |
| MsG0780041259.01.T01 | MTR_4g118810 | 42.938 | 177 | 90 | 2 | 1 | 166 | 1 | 177 | 1.49e-44 | 147 |
| MsG0780041259.01.T01 | MTR_2g020060 | 44.242 | 165 | 85 | 2 | 31 | 189 | 26 | 189 | 9.17e-39 | 131 |
| MsG0780041259.01.T01 | MTR_4g118800 | 34.783 | 161 | 95 | 4 | 26 | 181 | 26 | 181 | 1.94e-22 | 89.7 |
| MsG0780041259.01.T01 | MTR_8g089300 | 30.409 | 171 | 109 | 4 | 2 | 166 | 4 | 170 | 4.12e-20 | 83.6 |
| MsG0780041259.01.T01 | MTR_4g081880 | 29.560 | 159 | 107 | 3 | 21 | 177 | 22 | 177 | 2.81e-17 | 76.3 |
| MsG0780041259.01.T01 | MTR_0097s0070 | 29.452 | 146 | 97 | 2 | 45 | 184 | 44 | 189 | 1.17e-15 | 72.0 |
| MsG0780041259.01.T01 | MTR_5g041900 | 28.571 | 154 | 105 | 3 | 26 | 177 | 26 | 176 | 6.84e-15 | 69.7 |
| MsG0780041259.01.T01 | MTR_0004s0210 | 27.950 | 161 | 106 | 3 | 21 | 181 | 1 | 151 | 1.75e-14 | 68.2 |
| MsG0780041259.01.T01 | MTR_7g011090 | 27.500 | 160 | 111 | 3 | 20 | 177 | 20 | 176 | 1.27e-13 | 66.2 |
| MsG0780041259.01.T01 | MTR_7g083120 | 29.078 | 141 | 94 | 3 | 31 | 169 | 33 | 169 | 2.41e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041259.01.T01 | AT4G15630 | 39.267 | 191 | 109 | 2 | 1 | 185 | 1 | 190 | 2.43e-42 | 140 |
| MsG0780041259.01.T01 | AT4G15620 | 37.895 | 190 | 111 | 2 | 1 | 184 | 1 | 189 | 3.85e-39 | 132 |
| MsG0780041259.01.T01 | AT4G15610 | 30.994 | 171 | 114 | 3 | 1 | 167 | 1 | 171 | 4.36e-23 | 91.7 |
| MsG0780041259.01.T01 | AT3G06390 | 34.074 | 135 | 85 | 2 | 29 | 159 | 38 | 172 | 1.31e-17 | 77.4 |
| MsG0780041259.01.T01 | AT5G44550 | 33.125 | 160 | 99 | 3 | 32 | 184 | 22 | 180 | 6.64e-17 | 75.5 |
| MsG0780041259.01.T01 | AT4G15610 | 31.532 | 111 | 70 | 2 | 63 | 167 | 5 | 115 | 2.67e-16 | 72.4 |
| MsG0780041259.01.T01 | AT4G20390 | 36.090 | 133 | 79 | 3 | 32 | 158 | 22 | 154 | 1.06e-15 | 72.0 |
| MsG0780041259.01.T01 | AT5G15290 | 27.211 | 147 | 100 | 3 | 21 | 164 | 21 | 163 | 3.99e-15 | 70.5 |
| MsG0780041259.01.T01 | AT1G14160 | 27.607 | 163 | 115 | 3 | 26 | 187 | 49 | 209 | 2.75e-12 | 63.2 |
| MsG0780041259.01.T01 | AT4G16442 | 27.273 | 176 | 115 | 4 | 17 | 185 | 2 | 171 | 2.19e-11 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTATCATTGTGGGTTT+TGG | 0.265618 | 7:+88885851 | MsG0780041259.01.T01:CDS |
| GATGTGTTGCTTAGGGTTCT+TGG | 0.291243 | 7:+88885809 | MsG0780041259.01.T01:CDS |
| GAGAGTGAGCCACAAGTAAA+AGG | 0.319910 | 7:-88887916 | None:intergenic |
| GCTTTGGTTCTATCTATCAT+TGG | 0.323071 | 7:+88887881 | MsG0780041259.01.T01:CDS |
| TTCATATGCTGCAATTTCTA+TGG | 0.345306 | 7:+88887655 | MsG0780041259.01.T01:CDS |
| CACTGCACCAGCAGCTCCAT+TGG | 0.363063 | 7:-88887771 | None:intergenic |
| CATCCACACTTGTCTTTGAC+TGG | 0.380763 | 7:-88885733 | None:intergenic |
| TCTAGTTTGATCTATAATAA+TGG | 0.389846 | 7:-88887949 | None:intergenic |
| AATGCTAGACCTAGTTATAA+TGG | 0.390891 | 7:+88887733 | MsG0780041259.01.T01:CDS |
| GTGTTTATGATGTGTTGCTT+AGG | 0.399152 | 7:+88885801 | MsG0780041259.01.T01:CDS |
| CTCACTGCTACTATCATTGT+GGG | 0.403424 | 7:+88885845 | MsG0780041259.01.T01:CDS |
| GCTGGTGCAGTGGGAGTGTT+AGG | 0.413062 | 7:+88887782 | MsG0780041259.01.T01:CDS |
| TTCTCAGCCAATGGAGCTGC+TGG | 0.424568 | 7:+88887764 | MsG0780041259.01.T01:CDS |
| TCACAGCGATGTGAAGGTTA+TGG | 0.427097 | 7:+88885760 | MsG0780041259.01.T01:CDS |
| AACAGTCATGTGACGACAAT+AGG | 0.431776 | 7:-88887858 | None:intergenic |
| TGTTTATGATGTGTTGCTTA+GGG | 0.433057 | 7:+88885802 | MsG0780041259.01.T01:CDS |
| TTCTTGGTGACAAATGCTAT+AGG | 0.474689 | 7:+88887629 | MsG0780041259.01.T01:CDS |
| TCGTCACATGACTGTTGCTT+TGG | 0.482039 | 7:+88887865 | MsG0780041259.01.T01:CDS |
| TCTCACTGCTACTATCATTG+TGG | 0.489600 | 7:+88885844 | MsG0780041259.01.T01:CDS |
| AAGGAAACTCGCACGTGCAA+TGG | 0.499701 | 7:+88887810 | MsG0780041259.01.T01:CDS |
| CAGTCAAAGACAAGTGTGGA+TGG | 0.535899 | 7:+88885734 | MsG0780041259.01.T01:CDS |
| GCATTACTCTTCTCAGCCAA+TGG | 0.539824 | 7:+88887755 | MsG0780041259.01.T01:CDS |
| AATGGAGCTGCTGGTGCAGT+GGG | 0.549722 | 7:+88887773 | MsG0780041259.01.T01:CDS |
| ATTCAAAGCTACTGCTAAGT+GGG | 0.553173 | 7:+88885910 | MsG0780041259.01.T01:CDS |
| CAATGGAGCTGCTGGTGCAG+TGG | 0.564486 | 7:+88887772 | MsG0780041259.01.T01:CDS |
| AATTCAAAGCTACTGCTAAG+TGG | 0.570996 | 7:+88885909 | MsG0780041259.01.T01:CDS |
| GTGGGAGTGTTAGGACAGAA+AGG | 0.578933 | 7:+88887791 | MsG0780041259.01.T01:CDS |
| TCAACAATTGCAAGAACCAG+TGG | 0.593273 | 7:+88887683 | MsG0780041259.01.T01:CDS |
| TGGAGTTCACAGCGATGTGA+AGG | 0.594175 | 7:+88885754 | MsG0780041259.01.T01:CDS |
| AGAGTAATGCCATTATAACT+AGG | 0.597714 | 7:-88887742 | None:intergenic |
| AAACCAGTCAAAGACAAGTG+TGG | 0.653780 | 7:+88885730 | MsG0780041259.01.T01:CDS |
| CACAAGTAAAAGGAAGACAG+TGG | 0.729118 | 7:-88887906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTACTAAAAATAAAATAA+AGG | - | Chr7:88886440-88886459 | None:intergenic | 10.0% |
| !! | TATAATATGTTAGTTAATAA+CGG | + | Chr7:88886459-88886478 | MsG0780041259.01.T01:intron | 10.0% |
| !! | TTTAAAAAATTGTAAAAGAA+AGG | - | Chr7:88886184-88886203 | None:intergenic | 10.0% |
| !!! | TTTTTCTTCAAAAAAATTAA+TGG | - | Chr7:88887222-88887241 | None:intergenic | 10.0% |
| !! | AAAAAAATATAAAACAAACG+AGG | - | Chr7:88887559-88887578 | None:intergenic | 15.0% |
| !! | AATACATTTATATTCCAAAT+AGG | - | Chr7:88887371-88887390 | None:intergenic | 15.0% |
| !! | ATACATTTATATTCCAAATA+GGG | - | Chr7:88887370-88887389 | None:intergenic | 15.0% |
| !! | CAAAAAAATAAAAACACTAT+AGG | - | Chr7:88886415-88886434 | None:intergenic | 15.0% |
| !! | TTCATTAACAAATGTTATAA+GGG | + | Chr7:88886123-88886142 | MsG0780041259.01.T01:intron | 15.0% |
| !! | TTTCATTAACAAATGTTATA+AGG | + | Chr7:88886122-88886141 | MsG0780041259.01.T01:intron | 15.0% |
| !!! | AAATGTTTTAAGAAAGTAAA+TGG | + | Chr7:88886369-88886388 | MsG0780041259.01.T01:intron | 15.0% |
| !!! | ATATATTGATTGATTACTAA+TGG | - | Chr7:88886528-88886547 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTTTGAAATGTTA+AGG | + | Chr7:88885998-88886017 | MsG0780041259.01.T01:intron | 15.0% |
| !!! | GTATATAGTTTTGAAAATTT+AGG | - | Chr7:88886346-88886365 | None:intergenic | 15.0% |
| !!! | TAAATAAACTGATTTATGTT+TGG | - | Chr7:88887027-88887046 | None:intergenic | 15.0% |
| !!! | TATTTGGAATATAAATGTAT+TGG | + | Chr7:88887370-88887389 | MsG0780041259.01.T01:intron | 15.0% |
| !!! | TTTAGTTTTTGAAATGTTAA+GGG | + | Chr7:88885999-88886018 | MsG0780041259.01.T01:intron | 15.0% |
| !!! | TTTTTTTTTGAAAATGTTTC+TGG | + | Chr7:88886244-88886263 | MsG0780041259.01.T01:intron | 15.0% |
| !! | AAAAAATTGTAAAAGAAAGG+TGG | - | Chr7:88886181-88886200 | None:intergenic | 20.0% |
| !! | AAAGAAGGATAATTGATAAA+GGG | - | Chr7:88886936-88886955 | None:intergenic | 20.0% |
| !! | AAGATAATGTAGTGAATATT+TGG | - | Chr7:88886294-88886313 | None:intergenic | 20.0% |
| !! | AGATAATGTAGTGAATATTT+GGG | - | Chr7:88886293-88886312 | None:intergenic | 20.0% |
| !! | ATAAATAAAGTGATGTTGAT+TGG | - | Chr7:88887324-88887343 | None:intergenic | 20.0% |
| !! | TAAAGAAGGATAATTGATAA+AGG | - | Chr7:88886937-88886956 | None:intergenic | 20.0% |
| !! | TAATGACAGACTTTAATTAA+TGG | - | Chr7:88887252-88887271 | None:intergenic | 20.0% |
| !! | TCAAAAACTAAATTATCTAG+TGG | - | Chr7:88885991-88886010 | None:intergenic | 20.0% |
| !!! | ATGTATTGGTATTTTTTAAG+AGG | + | Chr7:88887384-88887403 | MsG0780041259.01.T01:intron | 20.0% |
| !!! | CATCACTTTATTTATCATAT+TGG | + | Chr7:88887329-88887348 | MsG0780041259.01.T01:intron | 20.0% |
| !!! | GATGAATTACTTTTTTTGAA+AGG | - | Chr7:88886667-88886686 | None:intergenic | 20.0% |
| !!! | TTTCTTAATTAGTGCTATTA+GGG | - | Chr7:88886076-88886095 | None:intergenic | 20.0% |
| !!! | TTTTCTTAATTAGTGCTATT+AGG | - | Chr7:88886077-88886096 | None:intergenic | 20.0% |
| ! | AAATGAAAGGAAAATGCTAA+AGG | - | Chr7:88886152-88886171 | None:intergenic | 25.0% |
| ! | AATGAAAGGAAAATGCTAAA+GGG | - | Chr7:88886151-88886170 | None:intergenic | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | Chr7:88886968-88886987 | None:intergenic | 25.0% |
| ! | ATATCTCTACAATTTCACAA+AGG | + | Chr7:88886687-88886706 | MsG0780041259.01.T01:intron | 25.0% |
| ! | TAAAGGAGAATTGATAAAGA+AGG | - | Chr7:88886951-88886970 | None:intergenic | 25.0% |
| ! | TAATTGATAAAGGGCAATAA+AGG | - | Chr7:88886927-88886946 | None:intergenic | 25.0% |
| ! | TATCTCTACAATTTCACAAA+GGG | + | Chr7:88886688-88886707 | MsG0780041259.01.T01:intron | 25.0% |
| !! | CGGTATATTTTTCATTCAAA+AGG | + | Chr7:88886479-88886498 | MsG0780041259.01.T01:intron | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | Chr7:88887071-88887090 | None:intergenic | 25.0% |
| !! | TGTTTTGTATTTTCCTTCAT+AGG | + | Chr7:88886035-88886054 | MsG0780041259.01.T01:intron | 25.0% |
| !! | TTGATTGGTTAAGCTTTAAT+GGG | - | Chr7:88887309-88887328 | None:intergenic | 25.0% |
| !!! | TTTTATAAAGTGTCGAATAC+AGG | - | Chr7:88887438-88887457 | None:intergenic | 25.0% |
| !!! | TTTTTAAGAGGTGTGATATT+TGG | + | Chr7:88887396-88887415 | MsG0780041259.01.T01:intron | 25.0% |
| AATGCTAGACCTAGTTATAA+TGG | + | Chr7:88887733-88887752 | MsG0780041259.01.T01:CDS | 30.0% | |
| AGAGTAATGCCATTATAACT+AGG | - | Chr7:88887745-88887764 | None:intergenic | 30.0% | |
| CATTTATATTCCAAATAGGG+AGG | - | Chr7:88887367-88887386 | None:intergenic | 30.0% | |
| GGGCAATAAAGGAAAATAAT+AGG | - | Chr7:88886916-88886935 | None:intergenic | 30.0% | |
| TTCATATGCTGCAATTTCTA+TGG | + | Chr7:88887655-88887674 | MsG0780041259.01.T01:CDS | 30.0% | |
| ! | ATTCTCTCTTAGGTTTTTCT+TGG | + | Chr7:88887613-88887632 | MsG0780041259.01.T01:intron | 30.0% |
| ! | GTTGATTGGTTAAGCTTTAA+TGG | - | Chr7:88887310-88887329 | None:intergenic | 30.0% |
| ! | TATTTGGGATAAAGAGAAGA+TGG | - | Chr7:88886278-88886297 | None:intergenic | 30.0% |
| !! | CAGTCACTTTGAAATTACTT+AGG | - | Chr7:88887588-88887607 | None:intergenic | 30.0% |
| !! | CTTCAAGGATAATTGCTTTT+GGG | - | Chr7:88886823-88886842 | None:intergenic | 30.0% |
| !! | TGTTTATGATGTGTTGCTTA+GGG | + | Chr7:88885802-88885821 | MsG0780041259.01.T01:CDS | 30.0% |
| !! | TTCAAGGATAATTGCTTTTG+GGG | - | Chr7:88886822-88886841 | None:intergenic | 30.0% |
| !!! | ATAGTGTTGATGTCAGATTT+TGG | + | Chr7:88887532-88887551 | MsG0780041259.01.T01:intron | 30.0% |
| !!! | TAGTGTTGATGTCAGATTTT+GGG | + | Chr7:88887533-88887552 | MsG0780041259.01.T01:intron | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | Chr7:88886761-88886780 | None:intergenic | 30.0% |
| AAACACACACAAAGATGCAT+TGG | + | Chr7:88887162-88887181 | MsG0780041259.01.T01:intron | 35.0% | |
| AAGGTGGTAGTACAAATGAA+AGG | - | Chr7:88886165-88886184 | None:intergenic | 35.0% | |
| AATGCATCTTTGTGTGTGTT+TGG | - | Chr7:88887163-88887182 | None:intergenic | 35.0% | |
| AATTCAAAGCTACTGCTAAG+TGG | + | Chr7:88885909-88885928 | MsG0780041259.01.T01:CDS | 35.0% | |
| ATGTACTTAAGCTTGTGAGT+AGG | + | Chr7:88886567-88886586 | MsG0780041259.01.T01:intron | 35.0% | |
| ATTCAAAGCTACTGCTAAGT+GGG | + | Chr7:88885910-88885929 | MsG0780041259.01.T01:CDS | 35.0% | |
| TATATTCCAAATAGGGAGGA+AGG | - | Chr7:88887363-88887382 | None:intergenic | 35.0% | |
| TGTACTTAAGCTTGTGAGTA+GGG | + | Chr7:88886568-88886587 | MsG0780041259.01.T01:intron | 35.0% | |
| ! | CTTGTTAACTTGACCTATGA+AGG | - | Chr7:88886051-88886070 | None:intergenic | 35.0% |
| ! | GACTGACTTTATTCTCTCTT+AGG | + | Chr7:88887603-88887622 | MsG0780041259.01.T01:intron | 35.0% |
| ! | GCTTCAAGGATAATTGCTTT+TGG | - | Chr7:88886824-88886843 | None:intergenic | 35.0% |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | Chr7:88886854-88886873 | None:intergenic | 35.0% |
| ! | TTCTTGGTGACAAATGCTAT+AGG | + | Chr7:88887629-88887648 | MsG0780041259.01.T01:CDS | 35.0% |
| !! | CACTGTAGAGAATTGCTTTT+GGG | - | Chr7:88886738-88886757 | None:intergenic | 35.0% |
| !! | GCTTTGGTTCTATCTATCAT+TGG | + | Chr7:88887881-88887900 | MsG0780041259.01.T01:CDS | 35.0% |
| !! | GTGTTTATGATGTGTTGCTT+AGG | + | Chr7:88885801-88885820 | MsG0780041259.01.T01:CDS | 35.0% |
| !! | TCAAGGATAATTGCTTTTGG+GGG | - | Chr7:88886821-88886840 | None:intergenic | 35.0% |
| !! | TGAACCAAACACGTTGTTTT+TGG | - | Chr7:88886777-88886796 | None:intergenic | 35.0% |
| !!! | TAGTGCTGTTTTATTTCCAC+TGG | - | Chr7:88887702-88887721 | None:intergenic | 35.0% |
| AAACCAGTCAAAGACAAGTG+TGG | + | Chr7:88885730-88885749 | MsG0780041259.01.T01:CDS | 40.0% | |
| AACAGTCATGTGACGACAAT+AGG | - | Chr7:88887861-88887880 | None:intergenic | 40.0% | |
| AATTTCACAAAGGGCCTGTT+TGG | + | Chr7:88886697-88886716 | MsG0780041259.01.T01:intron | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+AGG | - | Chr7:88886838-88886857 | None:intergenic | 40.0% | |
| CACAAGTAAAAGGAAGACAG+TGG | - | Chr7:88887909-88887928 | None:intergenic | 40.0% | |
| CTAGCCAAAAACAACGTGTT+TGG | + | Chr7:88886770-88886789 | MsG0780041259.01.T01:intron | 40.0% | |
| CTCACTGCTACTATCATTGT+GGG | + | Chr7:88885845-88885864 | MsG0780041259.01.T01:CDS | 40.0% | |
| GGTAATAAGCTGAACCAAAC+AGG | - | Chr7:88886714-88886733 | None:intergenic | 40.0% | |
| TCAACAATTGCAAGAACCAG+TGG | + | Chr7:88887683-88887702 | MsG0780041259.01.T01:CDS | 40.0% | |
| TCTCACTGCTACTATCATTG+TGG | + | Chr7:88885844-88885863 | MsG0780041259.01.T01:CDS | 40.0% | |
| TGTGAGTAGGGTTTAGTAGT+TGG | + | Chr7:88886580-88886599 | MsG0780041259.01.T01:intron | 40.0% | |
| ! | CACTGTCTTCCTTTTACTTG+TGG | + | Chr7:88887907-88887926 | MsG0780041259.01.T01:CDS | 40.0% |
| ! | GCACTGTAGAGAATTGCTTT+TGG | - | Chr7:88886739-88886758 | None:intergenic | 40.0% |
| ! | GCTACTATCATTGTGGGTTT+TGG | + | Chr7:88885851-88885870 | MsG0780041259.01.T01:CDS | 40.0% |
| !! | TATCATTGTGGGTTTTGGCA+AGG | + | Chr7:88885856-88885875 | MsG0780041259.01.T01:CDS | 40.0% |
| !! | TGTAGAGAATTGCTTTTGGG+TGG | - | Chr7:88886735-88886754 | None:intergenic | 40.0% |
| CAGTCAAAGACAAGTGTGGA+TGG | + | Chr7:88885734-88885753 | MsG0780041259.01.T01:CDS | 45.0% | |
| CATCCACACTTGTCTTTGAC+TGG | - | Chr7:88885736-88885755 | None:intergenic | 45.0% | |
| CTAGTGGTAGCATAGTAGAG+AGG | - | Chr7:88885975-88885994 | None:intergenic | 45.0% | |
| GAGAGTGAGCCACAAGTAAA+AGG | - | Chr7:88887919-88887938 | None:intergenic | 45.0% | |
| GCATTACTCTTCTCAGCCAA+TGG | + | Chr7:88887755-88887774 | MsG0780041259.01.T01:CDS | 45.0% | |
| TCACAGCGATGTGAAGGTTA+TGG | + | Chr7:88885760-88885779 | MsG0780041259.01.T01:CDS | 45.0% | |
| ! | TCGTCACATGACTGTTGCTT+TGG | + | Chr7:88887865-88887884 | MsG0780041259.01.T01:CDS | 45.0% |
| !! | GATGTGTTGCTTAGGGTTCT+TGG | + | Chr7:88885809-88885828 | MsG0780041259.01.T01:CDS | 45.0% |
| AAGGAAACTCGCACGTGCAA+TGG | + | Chr7:88887810-88887829 | MsG0780041259.01.T01:CDS | 50.0% | |
| GTAGCTCCTTCCTCCCTATT+TGG | + | Chr7:88887354-88887373 | MsG0780041259.01.T01:intron | 50.0% | |
| TGGAGTTCACAGCGATGTGA+AGG | + | Chr7:88885754-88885773 | MsG0780041259.01.T01:CDS | 50.0% | |
| !! | GGGTTTTGGCAAGGAGACTA+AGG | + | Chr7:88885865-88885884 | MsG0780041259.01.T01:CDS | 50.0% |
| !! | GTGGGAGTGTTAGGACAGAA+AGG | + | Chr7:88887791-88887810 | MsG0780041259.01.T01:CDS | 50.0% |
| AATGGAGCTGCTGGTGCAGT+GGG | + | Chr7:88887773-88887792 | MsG0780041259.01.T01:CDS | 55.0% | |
| TTCTCAGCCAATGGAGCTGC+TGG | + | Chr7:88887764-88887783 | MsG0780041259.01.T01:CDS | 55.0% | |
| CAATGGAGCTGCTGGTGCAG+TGG | + | Chr7:88887772-88887791 | MsG0780041259.01.T01:CDS | 60.0% | |
| CACTGCACCAGCAGCTCCAT+TGG | - | Chr7:88887774-88887793 | None:intergenic | 60.0% | |
| !! | GCTGGTGCAGTGGGAGTGTT+AGG | + | Chr7:88887782-88887801 | MsG0780041259.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 88885725 | 88887970 | 88885725 | ID=MsG0780041259.01;Name=MsG0780041259.01 |
| Chr7 | mRNA | 88885725 | 88887970 | 88885725 | ID=MsG0780041259.01.T01;Parent=MsG0780041259.01;Name=MsG0780041259.01.T01;_AED=0.40;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|190 |
| Chr7 | exon | 88885725 | 88885951 | 88885725 | ID=MsG0780041259.01.T01:exon:3404;Parent=MsG0780041259.01.T01 |
| Chr7 | exon | 88887625 | 88887970 | 88887625 | ID=MsG0780041259.01.T01:exon:3405;Parent=MsG0780041259.01.T01 |
| Chr7 | CDS | 88885725 | 88885951 | 88885725 | ID=MsG0780041259.01.T01:cds;Parent=MsG0780041259.01.T01 |
| Chr7 | CDS | 88887625 | 88887970 | 88887625 | ID=MsG0780041259.01.T01:cds;Parent=MsG0780041259.01.T01 |
| Gene Sequence |
| Protein sequence |
