AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015050 MtrunA17_Chr4g0057351 81.941 371 3 3 1 307 1 371 0.0 556
Msa0015050 MtrunA17_Chr5g0397921 61.804 377 68 8 5 307 13 387 2.52e-127 368
Msa0015050 MtrunA17_Chr7g0246571 45.924 368 133 8 1 305 1 365 1.57e-90 274
Msa0015050 MtrunA17_Chr8g0391751 44.886 352 99 12 21 307 15 336 1.04e-85 260
Msa0015050 MtrunA17_Chr1g0161291 42.061 359 130 11 7 307 12 350 2.02e-80 247
Msa0015050 MtrunA17_Chr7g0255261 38.023 263 133 6 68 301 34 295 4.08e-53 176
Msa0015050 MtrunA17_Chr3g0138451 31.429 280 116 8 84 296 91 361 3.76e-31 120
Msa0015050 MtrunA17_Chr1g0148631 43.902 164 75 4 142 296 230 385 1.17e-28 113
Msa0015050 MtrunA17_Chr7g0255321 35.000 180 104 4 130 296 108 287 1.28e-26 106
Msa0015050 MtrunA17_Chr7g0255331 35.057 174 95 3 131 296 128 291 7.61e-25 101
Msa0015050 MtrunA17_Chr3g0102761 27.273 253 118 7 84 293 99 328 2.82e-22 95.1
Msa0015050 MtrunA17_Chr5g0446921 31.076 251 112 6 84 293 105 335 5.08e-21 91.7
Msa0015050 MtrunA17_Chr3g0113811 57.143 49 20 1 246 293 100 148 2.12e-12 64.3
Msa0015050 MtrunA17_Chr1g0198201 43.836 73 28 2 246 305 82 154 2.81e-12 65.1
Msa0015050 MtrunA17_Chr8g0369691 50.000 60 29 1 243 301 436 495 5.77e-12 66.2
Msa0015050 MtrunA17_Chr5g0437361 51.923 52 24 1 246 296 97 148 6.71e-12 63.2
Msa0015050 MtrunA17_Chr4g0065171 56.000 50 20 2 249 296 480 529 9.04e-12 65.5
Msa0015050 MtrunA17_Chr5g0408871 50.000 56 27 1 247 301 500 555 2.48e-11 64.3
Msa0015050 MtrunA17_Chr3g0112041 32.039 103 65 2 196 294 154 255 2.52e-11 63.2
Msa0015050 MtrunA17_Chr5g0417501 35.135 74 45 1 223 296 89 159 8.26e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015050 AT4G11680.1 53.216 342 102 5 15 302 51 388 2.92e-108 320
Msa0015050 AT1G63170.1 51.187 379 107 9 2 306 5 379 2.85e-102 305
Msa0015050 AT4G11680.2 49.057 371 102 6 15 302 51 417 6.70e-102 305
Msa0015050 AT1G12760.2 48.961 337 98 7 45 307 1 337 4.46e-101 300
Msa0015050 AT3G61180.1 46.322 367 131 9 3 307 17 379 1.18e-97 293
Msa0015050 AT1G68070.1 44.828 348 132 10 7 302 3 342 1.34e-84 258
Msa0015050 AT2G01735.1 43.910 312 114 7 46 301 50 356 1.49e-74 233
Msa0015050 AT1G12760.1 72.857 140 32 2 174 307 269 408 3.03e-67 216
Msa0015050 AT1G12760.1 65.094 106 25 1 21 114 48 153 7.07e-39 141
Msa0015050 AT2G01735.2 41.379 203 71 2 46 200 50 252 1.18e-39 140
Msa0015050 AT1G80400.1 40.828 169 81 4 142 301 246 404 4.33e-32 123
Msa0015050 AT4G32600.1 42.941 170 79 6 142 301 251 412 5.05e-32 124
Msa0015050 AT4G32600.2 42.941 170 79 6 142 301 251 412 5.05e-32 124
Msa0015050 AT4G26580.1 28.800 250 115 8 84 296 110 333 8.58e-19 85.9
Msa0015050 AT4G26580.2 28.800 250 115 8 84 296 110 333 8.58e-19 85.9
Msa0015050 AT5G55970.2 27.559 254 117 7 84 296 114 341 3.13e-17 81.3
Msa0015050 AT5G55970.1 27.559 254 117 7 84 296 114 341 3.13e-17 81.3
Msa0015050 AT4G26400.2 34.177 79 52 0 218 296 207 285 2.29e-11 64.3
Msa0015050 AT4G26400.1 34.177 79 52 0 218 296 207 285 2.29e-11 64.3
Msa0015050 AT4G09120.1 27.941 136 84 3 162 296 46 168 4.88e-11 63.2

Find 102 sgRNAs with CRISPR-Local

Find 604 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTATGTATTGTCTTCT+TGG 0.132406 1_1:-24384706 Msa0015050:CDS
TTTAAGTGGTTGTGTATATC+TGG 0.257693 1_1:-24380934 Msa0015050:three_prime_UTR
TTCTGGACAGTATGTGAATT+TGG 0.268627 1_1:-24387486 Msa0015050:CDS
TCCGATGAATTTCCGATTAA+CGG 0.296045 1_1:+24387941 None:intergenic
TTGGGGAATTTGCATGCTTT+TGG 0.312100 1_1:-24381078 Msa0015050:three_prime_UTR
GTGGTTGGAGGTGGTGGTAG+TGG 0.323967 1_1:-24387536 Msa0015050:CDS
AGTTATATAATTCTTTGTTA+TGG 0.343764 1_1:-24380962 Msa0015050:three_prime_UTR
GGTAATGTGGTTGGAGGTGG+TGG 0.346929 1_1:-24387542 Msa0015050:CDS
CCACACAGGTACAGTGAAAA+TGG 0.354719 1_1:+24381217 None:intergenic
TCGGCAAGCACGTGTTCAAT+TGG 0.359520 1_1:+24381703 None:intergenic
AAGTTTCTAGCAGCCTTGTT+GGG 0.365125 1_1:-24381096 Msa0015050:three_prime_UTR
TTTGATTCAATGGATAGTTC+TGG 0.369104 1_1:-24387503 Msa0015050:CDS
CGGCAAGCACGTGTTCAATT+GGG 0.378266 1_1:+24381704 None:intergenic
AGGTTATGTATTGTCTTCTT+GGG 0.379260 1_1:-24384705 Msa0015050:CDS
GGATTTGAGCTTTGATTCAA+TGG 0.382308 1_1:-24387513 Msa0015050:CDS
CGCGCCGCTTGCCGGAGACT+CGG 0.383551 1_1:+24387884 None:intergenic
TGGTTGGAGGTGGTGGTAGT+GGG 0.385771 1_1:-24387535 Msa0015050:CDS
GTAGAAACCGCGCCGCTTGC+CGG 0.393702 1_1:+24387876 None:intergenic
GCCTTTCTGCCTATGATGAC+GGG 0.398935 1_1:-24381269 Msa0015050:CDS
GGTGGTAATGTGGTTGGAGG+TGG 0.405346 1_1:-24387545 Msa0015050:CDS
TAGGAGACGGGTGCGGATGC+GGG 0.412394 1_1:-24387585 Msa0015050:CDS
TTCTCCGTGCGCCGAGTCTC+CGG 0.418084 1_1:-24387895 Msa0015050:CDS
ACGGATCCGACGCCGTTAAT+CGG 0.418527 1_1:-24387953 Msa0015050:CDS
GAAGTTTCTAGCAGCCTTGT+TGG 0.431133 1_1:-24381097 Msa0015050:three_prime_UTR
ACTGTACCTGTGTGGACAAA+TGG 0.436237 1_1:-24381209 Msa0015050:CDS
GAGAATTCTCCGTCCGGAGT+TGG 0.436539 1_1:+24387913 None:intergenic
ATAGGAGACGGGTGCGGATG+CGG 0.441656 1_1:-24387586 Msa0015050:CDS
TAGTTCAACCCCGTCATCAT+AGG 0.446675 1_1:+24381260 None:intergenic
ACGGGTGCGGATGCGGGGAG+AGG 0.447501 1_1:-24387579 Msa0015050:CDS
TCAATCATTATTCCTCCAAC+AGG 0.450655 1_1:+24381742 None:intergenic
TGCCTTTCTGCCTATGATGA+CGG 0.453256 1_1:-24381270 Msa0015050:CDS
TGGAAGAACGGCAAAGCGAT+TGG 0.456957 1_1:-24387784 Msa0015050:CDS
GGAGACTGCGGCGGAGCAGT+TGG 0.462789 1_1:-24387804 Msa0015050:CDS
CGAGCTCGCCGCTTAGGTTG+TGG 0.474092 1_1:-24387664 Msa0015050:CDS
ATACTTCAGTACAGGTCTCT+TGG 0.476639 1_1:-24381023 Msa0015050:three_prime_UTR
CACAACCTAAGCGGCGAGCT+CGG 0.476821 1_1:+24387665 None:intergenic
AATCGCCGAGCTCGCCGCTT+AGG 0.476892 1_1:-24387670 Msa0015050:CDS
GGAAGAACGGCAAAGCGATT+GGG 0.485045 1_1:-24387783 Msa0015050:CDS
TATATAATTCTTTGTTATGG+TGG 0.488618 1_1:-24380959 Msa0015050:three_prime_UTR
TACGACAAGCAAGCGGGCGG+AGG 0.501945 1_1:-24387856 Msa0015050:CDS
ATTGCGCTGGCATGCATCAT+TGG 0.505810 1_1:-24384654 Msa0015050:CDS
GCATGGAAGGCAACAGCAAA+CGG 0.506918 1_1:+24384626 None:intergenic
GGTTGGAGGTGGTGGTAGTG+GGG 0.509837 1_1:-24387534 Msa0015050:CDS
AGGAGACGGGTGCGGATGCG+GGG 0.509969 1_1:-24387584 Msa0015050:CDS
AAGGCTGCTAGAAACTTCTC+TGG 0.511318 1_1:+24381102 None:intergenic
CCCCGTCATCATAGGCAGAA+AGG 0.513764 1_1:+24381268 None:intergenic
GACAATGGTGGTAATGTGGT+TGG 0.526652 1_1:-24387551 Msa0015050:CDS
TGCGCCGAGTCTCCGGCAAG+CGG 0.529911 1_1:-24387888 Msa0015050:CDS
GAATTCAAACATGGCGACGA+CGG 0.534390 1_1:-24387972 None:intergenic
CGCACGGAGAATTCTCCGTC+CGG 0.549074 1_1:+24387907 None:intergenic
CAAGATGTTATACTTGCAGA+GGG 0.551554 1_1:+24381164 None:intergenic
GTTAATATATACTTCAGTAC+AGG 0.553434 1_1:-24381031 Msa0015050:three_prime_UTR
AATGGTGGTAATGTGGTTGG+AGG 0.555128 1_1:-24387548 Msa0015050:CDS
CGTGCTTGCCGATGAGGATG+CGG 0.557865 1_1:-24381692 Msa0015050:intron
AAGTAGCAGCCATGGTCAAG+AGG 0.560452 1_1:-24381139 Msa0015050:CDS
GATGCGTGAACCGTCGATGA+TGG 0.561472 1_1:-24387831 Msa0015050:CDS
CGGCGGAGCAGTTGGAAGAA+CGG 0.561738 1_1:-24387796 Msa0015050:CDS
TCTACACTTCCTCTTGACCA+TGG 0.562004 1_1:+24381130 None:intergenic
CTTGCCGGAGACTCGGCGCA+CGG 0.562168 1_1:+24387891 None:intergenic
CGAGTCTCCGGCAAGCGGCG+CGG 0.563537 1_1:-24387883 Msa0015050:CDS
GATAATACACAAGGACCTGT+TGG 0.564160 1_1:-24381757 Msa0015050:CDS
TACAGAAGCGCAATGATGCA+TGG 0.564490 1_1:+24384609 None:intergenic
AGTTTCTAGCAGCCTTGTTG+GGG 0.566678 1_1:-24381095 Msa0015050:three_prime_UTR
ATCTTGAAAAGTAGCAGCCA+TGG 0.568994 1_1:-24381147 Msa0015050:CDS
AGATGTTATACTTGCAGAGG+GGG 0.574123 1_1:+24381166 None:intergenic
GAAGTATATATTAACACGCT+GGG 0.578590 1_1:+24381039 None:intergenic
TCAAGATGTTATACTTGCAG+AGG 0.581995 1_1:+24381163 None:intergenic
GGTTTCTACGACAAGCAAGC+GGG 0.582045 1_1:-24387862 Msa0015050:CDS
TGAAGTATATATTAACACGC+TGG 0.584723 1_1:+24381038 None:intergenic
GCCGTTAATCGGAAATTCAT+CGG 0.592072 1_1:-24387942 Msa0015050:CDS
CGATTGGGCGTATTCGAAGC+CGG 0.593816 1_1:-24387768 Msa0015050:CDS
GAAGCGCAATGATGCATGGA+AGG 0.596474 1_1:+24384613 None:intergenic
GGCAAGCACGTGTTCAATTG+GGG 0.597692 1_1:+24381705 None:intergenic
TGAACACGTGCTTGCCGATG+AGG 0.597996 1_1:-24381698 Msa0015050:CDS
TTGAGTATAGGAGACGGGTG+CGG 0.599547 1_1:-24387592 Msa0015050:CDS
GTCTCCCTCACCATCATCGA+CGG 0.601299 1_1:+24387821 None:intergenic
ACAACATACCGCATCCTCAT+CGG 0.601312 1_1:+24381684 None:intergenic
TGGTGATTCTTGATATTCTG+TGG 0.603674 1_1:-24387745 Msa0015050:CDS
CCTTTCTGCCTATGATGACG+GGG 0.612288 1_1:-24381268 Msa0015050:CDS
CAGTGAAAATGGTGACCACA+AGG 0.618872 1_1:+24381228 None:intergenic
CCTAAAATCCACAACCTAAG+CGG 0.621985 1_1:+24387656 None:intergenic
GAATGACAATGGTGGTAATG+TGG 0.622986 1_1:-24387555 Msa0015050:CDS
AGCATGCAAATTCCCCAACA+AGG 0.623388 1_1:+24381083 None:intergenic
AATACACAAGGACCTGTTGG+AGG 0.623675 1_1:-24381754 Msa0015050:CDS
CGGTTTCTACGACAAGCAAG+CGG 0.627173 1_1:-24387863 Msa0015050:CDS
TCATCGGACGAATCCAACTC+CGG 0.630172 1_1:-24387926 Msa0015050:CDS
CGGGGAGAGGTGAATGACAA+TGG 0.633288 1_1:-24387566 Msa0015050:CDS
GATGGTGAGGGAGACTGCGG+CGG 0.643226 1_1:-24387813 Msa0015050:CDS
TTCTACGACAAGCAAGCGGG+CGG 0.647736 1_1:-24387859 Msa0015050:CDS
GAATTTCCGATTAACGGCGT+CGG 0.654543 1_1:+24387947 None:intergenic
GAACTAAGACAACTTCCTTG+TGG 0.655049 1_1:-24381243 Msa0015050:CDS
TATATCTGGTCATTGTACAC+CGG 0.664140 1_1:-24380920 Msa0015050:three_prime_UTR
AGAATATCAAGAATCACCAC+CGG 0.672219 1_1:+24387749 None:intergenic
CGGACGAATCCAACTCCGGA+CGG 0.678528 1_1:-24387922 Msa0015050:CDS
GTGAACCGTCGATGATGGTG+AGG 0.680229 1_1:-24387826 Msa0015050:CDS
GATGATGGTGAGGGAGACTG+CGG 0.684916 1_1:-24387816 Msa0015050:CDS
TGAACCGTCGATGATGGTGA+GGG 0.687021 1_1:-24387825 Msa0015050:CDS
GTGCAGCCATTTGTCCACAC+AGG 0.694074 1_1:+24381203 None:intergenic
AAGCTTGCTGATAATACACA+AGG 0.697762 1_1:-24381766 Msa0015050:CDS
TTGGGCGTATTCGAAGCCGG+TGG 0.707354 1_1:-24387765 Msa0015050:CDS
GGAGAGGTGAATGACAATGG+TGG 0.708953 1_1:-24387563 Msa0015050:CDS
AAGATGTTATACTTGCAGAG+GGG 0.723861 1_1:+24381165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTTGTTTATTTCA+TGG + chr1_1:24385963-24385982 None:intergenic 10.0%
!!! ATTTTACATAAAGAAAAACA+AGG + chr1_1:24382396-24382415 None:intergenic 15.0%
!! AAATTGTAAACTAAATGATA+TGG - chr1_1:24382412-24382431 Msa0015050:intron 15.0%
!! AATTGTAAACTAAATGATAT+GGG - chr1_1:24382413-24382432 Msa0015050:intron 15.0%
!! AGAAATTATCTCATTAATAA+AGG + chr1_1:24382557-24382576 None:intergenic 15.0%
!!! TTCTATATATATTTTCTCTT+TGG - chr1_1:24384053-24384072 Msa0015050:intron 15.0%
!!! TCTATATATATTTTCTCTTT+GGG - chr1_1:24384054-24384073 Msa0015050:intron 15.0%
!! AAAATCACTCTTAAATAATA+AGG - chr1_1:24385029-24385048 Msa0015050:intron 15.0%
!!! TAAATACTCTTTAAGTTATA+AGG + chr1_1:24386898-24386917 None:intergenic 15.0%
!! ATCATTTGAAAAAATTAATC+TGG - chr1_1:24387492-24387511 Msa0015050:CDS 15.0%
!!! ATATTTAATTTATTTGTGTG+TGG - chr1_1:24387519-24387538 Msa0015050:CDS 15.0%
!! AGTTATATAATTCTTTGTTA+TGG - chr1_1:24387872-24387891 Msa0015050:CDS 15.0%
!! GAAAATTTGAACTCTATTAT+AGG - chr1_1:24381458-24381477 Msa0015050:intron 20.0%
!!! TATTTTGAAATCTGGATTAA+AGG + chr1_1:24381826-24381845 None:intergenic 20.0%
!!! TATTTCAGTTTAAAACATAC+AGG - chr1_1:24381884-24381903 Msa0015050:intron 20.0%
!! GAAAAAAAATGAATATGATG+TGG - chr1_1:24381978-24381997 Msa0015050:intron 20.0%
!! GTGATTTAAAAATCAAAAGT+AGG + chr1_1:24382140-24382159 None:intergenic 20.0%
!!! TCTTTTCATAAATGAAATCA+GGG + chr1_1:24382454-24382473 None:intergenic 20.0%
!!! ATCTTTTCATAAATGAAATC+AGG + chr1_1:24382455-24382474 None:intergenic 20.0%
!! GACAAAATCTATTAAGAAAA+TGG + chr1_1:24382513-24382532 None:intergenic 20.0%
!! TTATCTCATTAATAAAGGTT+AGG + chr1_1:24382552-24382571 None:intergenic 20.0%
!! AAATTAGTGCAATCAATTAT+TGG - chr1_1:24382655-24382674 Msa0015050:intron 20.0%
!! AATAAAAGAAAACATTGTGT+TGG + chr1_1:24382776-24382795 None:intergenic 20.0%
!!! ACACAATGTTTTCTTTTATT+TGG - chr1_1:24382776-24382795 Msa0015050:intron 20.0%
!!! AATGTTTTCTTTTATTTGGT+GGG - chr1_1:24382780-24382799 Msa0015050:intron 20.0%
!!! TGACAACTCTTATTTATTAT+GGG - chr1_1:24382976-24382995 Msa0015050:intron 20.0%
!! CTCACATTAATATTTCAATT+TGG - chr1_1:24383720-24383739 Msa0015050:intron 20.0%
!! TACTTTACATATATAACTAC+CGG + chr1_1:24383771-24383790 None:intergenic 20.0%
!!! TATTTGTTTTTGAATCATCA+AGG - chr1_1:24384397-24384416 Msa0015050:intron 20.0%
!! TGCTTTAATATTGTTTATCA+TGG - chr1_1:24384828-24384847 Msa0015050:intron 20.0%
!! AGTATTATAACAACATAGAT+TGG + chr1_1:24385302-24385321 None:intergenic 20.0%
!! AATGTTTAATACGTAAAGTT+TGG - chr1_1:24386048-24386067 Msa0015050:intron 20.0%
!! ATGTTTAATACGTAAAGTTT+GGG - chr1_1:24386049-24386068 Msa0015050:intron 20.0%
!!! AAAATTTGTTACACCTTATA+AGG + chr1_1:24386121-24386140 None:intergenic 20.0%
!! TTCTAAATTCTAATTATGAG+TGG - chr1_1:24386858-24386877 Msa0015050:intron 20.0%
!! TAAATATTATTTCACTGTGA+AGG - chr1_1:24387245-24387264 Msa0015050:intron 20.0%
!! AAATATTATTTCACTGTGAA+GGG - chr1_1:24387246-24387265 Msa0015050:intron 20.0%
!!! GGAGAATTATGTATATATTT+TGG - chr1_1:24387350-24387369 Msa0015050:intron 20.0%
!!! TATATAATTCTTTGTTATGG+TGG - chr1_1:24387875-24387894 Msa0015050:CDS 20.0%
! GAATTTCGTGTTTATTATTG+CGG - chr1_1:24381111-24381130 Msa0015050:three_prime_UTR 25.0%
! GCTTTCATGAAAATATATTG+AGG - chr1_1:24381666-24381685 Msa0015050:intron 25.0%
! ATTGATGTTTCATTATACTC+TGG - chr1_1:24381691-24381710 Msa0015050:intron 25.0%
!!! CATACAGGATTATTTCTAAT+AGG - chr1_1:24381899-24381918 Msa0015050:intron 25.0%
! ACTTTGATTGTGAAAATAGA+TGG - chr1_1:24382003-24382022 Msa0015050:intron 25.0%
!! TTTTGTCCTAGTACTAAATA+GGG + chr1_1:24382242-24382261 None:intergenic 25.0%
!! ATTTTGTCCTAGTACTAAAT+AGG + chr1_1:24382243-24382262 None:intergenic 25.0%
!!! TCTTAATTTCTTAATTTGCG+TGG - chr1_1:24382574-24382593 Msa0015050:intron 25.0%
!!! CTTAATTTCTTAATTTGCGT+GGG - chr1_1:24382575-24382594 Msa0015050:intron 25.0%
! GCACTAATTTCACTATAATA+TGG + chr1_1:24382645-24382664 None:intergenic 25.0%
!!! CAATGTTTTCTTTTATTTGG+TGG - chr1_1:24382779-24382798 Msa0015050:intron 25.0%
!! GTGACAACTCTTATTTATTA+TGG - chr1_1:24382975-24382994 Msa0015050:intron 25.0%
!!! GATTTTTTAGATACTGGTTT+TGG - chr1_1:24383246-24383265 Msa0015050:intron 25.0%
! AATTCATCAAATGAAGATGA+AGG + chr1_1:24383334-24383353 None:intergenic 25.0%
!! CAGTTTCTTTTTGTTAGAAA+TGG - chr1_1:24383391-24383410 Msa0015050:intron 25.0%
!! GTACTCTTAACACTTTTATT+TGG - chr1_1:24383652-24383671 Msa0015050:intron 25.0%
! GATCTAAATAAATCTTCATG+TGG - chr1_1:24383687-24383706 Msa0015050:intron 25.0%
! ATTGAAATATTAATGTGAGC+AGG + chr1_1:24383719-24383738 None:intergenic 25.0%
! CATTAATATTTCAATTTGGC+TGG - chr1_1:24383724-24383743 Msa0015050:intron 25.0%
! GTAGTAAACTACTATAAAAG+CGG + chr1_1:24384084-24384103 None:intergenic 25.0%
! ACAAAATACACTTTCTTTAC+AGG - chr1_1:24384109-24384128 Msa0015050:intron 25.0%
! TACCAAATTCATTCAACTTT+CGG + chr1_1:24384357-24384376 None:intergenic 25.0%
! AATGAATTTGGTAGAACTTA+CGG - chr1_1:24384364-24384383 Msa0015050:intron 25.0%
!!! GATGCTATTTTTTTTTTTGG+TGG + chr1_1:24384569-24384588 None:intergenic 25.0%
!!! ACGGATGCTATTTTTTTTTT+TGG + chr1_1:24384572-24384591 None:intergenic 25.0%
!! AAAAAAATAGCATCCGTTTT+TGG - chr1_1:24384575-24384594 Msa0015050:intron 25.0%
! CAATATTAAAGCAAGTTAGA+GGG + chr1_1:24384821-24384840 None:intergenic 25.0%
! ACAATATTAAAGCAAGTTAG+AGG + chr1_1:24384822-24384841 None:intergenic 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + chr1_1:24386361-24386380 None:intergenic 25.0%
! GAACTAAAAAATTGTATTGG+AGG + chr1_1:24385685-24385704 None:intergenic 25.0%
! GAGGAACTAAAAAATTGTAT+TGG + chr1_1:24385688-24385707 None:intergenic 25.0%
! AACTTCTGAATCAAATGATT+GGG - chr1_1:24385874-24385893 Msa0015050:intron 25.0%
!! TTTTTGAATGGCAGTTTTTT+GGG - chr1_1:24386017-24386036 Msa0015050:intron 25.0%
!!! CAAATTTTGAAACGTTTACA+TGG - chr1_1:24386133-24386152 Msa0015050:intron 25.0%
! TTTACATGGATGATATGAAA+TGG - chr1_1:24386147-24386166 Msa0015050:intron 25.0%
! CGATTAAAAGATAACTTCTT+AGG - chr1_1:24386191-24386210 Msa0015050:intron 25.0%
! AATATAAAATCCTCCTCATT+TGG - chr1_1:24386332-24386351 Msa0015050:intron 25.0%
! ATATAAAATCCTCCTCATTT+GGG - chr1_1:24386333-24386352 Msa0015050:intron 25.0%
! TAGCTAAAAAATTGTATTGG+AGG - chr1_1:24386357-24386376 Msa0015050:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG - chr1_1:24386361-24386380 Msa0015050:intron 25.0%
! AGTGAAATAATATTTAGTGC+TGG + chr1_1:24387241-24387260 None:intergenic 25.0%
! ACATGACTCTATGTTATTAT+AGG + chr1_1:24387310-24387329 None:intergenic 25.0%
! GTTAATATATACTTCAGTAC+AGG - chr1_1:24387803-24387822 Msa0015050:CDS 25.0%
!!! TGTGTGTTTGTTTTGAGTAT+AGG - chr1_1:24381230-24381249 Msa0015050:CDS 30.0%
!!! TTTGTTTTGAGTATAGGAGA+CGG - chr1_1:24381236-24381255 Msa0015050:CDS 30.0%
TTTGATTCAATGGATAGTTC+TGG - chr1_1:24381331-24381350 Msa0015050:intron 30.0%
ATACTAAAAACACTCGTTGT+AGG + chr1_1:24381525-24381544 None:intergenic 30.0%
! TTCATGAAAGCATAATTCTC+AGG + chr1_1:24381657-24381676 None:intergenic 30.0%
!! TTTCATTATACTCTGGCTTT+CGG - chr1_1:24381698-24381717 Msa0015050:CDS 30.0%
TAGCATAGCTACTTAAGTAA+CGG + chr1_1:24381777-24381796 None:intergenic 30.0%
AAATTGCTAATTGAGAACTC+CGG - chr1_1:24381796-24381815 Msa0015050:CDS 30.0%
!!! CATGAAGGTATTTTGAAATC+TGG + chr1_1:24381834-24381853 None:intergenic 30.0%
CAGATTTCAAAATACCTTCA+TGG - chr1_1:24381832-24381851 Msa0015050:CDS 30.0%
AGAAGCTAAAATTTCCATGA+AGG + chr1_1:24381849-24381868 None:intergenic 30.0%
TTGATTGTGAAAATAGATGG+TGG - chr1_1:24382006-24382025 Msa0015050:intron 30.0%
CAAAAGTAGGATAAATCCAT+AGG + chr1_1:24382127-24382146 None:intergenic 30.0%
TTGTCAAACAGTAGTTATAG+CGG - chr1_1:24382264-24382283 Msa0015050:intron 30.0%
TCTCATTAATAAAGGTTAGG+AGG + chr1_1:24382549-24382568 None:intergenic 30.0%
AACTTTCAATATTAGTTGCG+AGG - chr1_1:24383006-24383025 Msa0015050:intron 30.0%
! TGGAAAAAAGAGGATTTTGA+GGG - chr1_1:24383224-24383243 Msa0015050:intron 30.0%
!!! TTGAGGGATTTTTTAGATAC+TGG - chr1_1:24383240-24383259 Msa0015050:intron 30.0%
TGAAAATATCTGCAACTGTT+TGG + chr1_1:24383373-24383392 None:intergenic 30.0%
TTGAAACAGAATTCTGTTAG+AGG - chr1_1:24383444-24383463 Msa0015050:intron 30.0%
! CAGAGAGTACAAGTATTTAT+AGG - chr1_1:24383530-24383549 Msa0015050:intron 30.0%
!! AAGTGTTAAGAGTACTGATT+AGG + chr1_1:24383647-24383666 None:intergenic 30.0%
AATATTTCAATTTGGCTGGA+AGG - chr1_1:24383728-24383747 Msa0015050:intron 30.0%
ATATTTCAATTTGGCTGGAA+GGG - chr1_1:24383729-24383748 Msa0015050:intron 30.0%
! ATATATAACTACCGGTGTTA+CGG + chr1_1:24383763-24383782 None:intergenic 30.0%
TTTCCATTGCTAACTTTCAT+TGG - chr1_1:24383813-24383832 Msa0015050:intron 30.0%
AGGTTATGTATTGTCTTCTT+GGG - chr1_1:24384129-24384148 Msa0015050:intron 30.0%
ATCATCAAGGCTAAATGAAA+TGG - chr1_1:24384410-24384429 Msa0015050:intron 30.0%
AAGAAGGAAACTAGAATTAC+TGG - chr1_1:24384433-24384452 Msa0015050:intron 30.0%
TAAGCTAAGCTCAACAAAAA+CGG + chr1_1:24384492-24384511 None:intergenic 30.0%
!!! TTTTTTTTTTTGGTGGTGGT+CGG + chr1_1:24384562-24384581 None:intergenic 30.0%
!!! GCTATTTTTTTTTTTGGTGG+TGG + chr1_1:24384566-24384585 None:intergenic 30.0%
!! TTCAAATGTTCAGTTTTGTC+AGG + chr1_1:24384622-24384641 None:intergenic 30.0%
!! AACTTAATGTTAGCTTGTAG+AGG - chr1_1:24384922-24384941 Msa0015050:intron 30.0%
GTGCAAAATATGAGGAAAAA+TGG - chr1_1:24385517-24385536 Msa0015050:intron 30.0%
AAAAAATTGTATTGGAGGAG+GGG + chr1_1:24386362-24386381 None:intergenic 30.0%
CTAAAAAATTGTATTGGAGG+AGG + chr1_1:24386360-24386379 None:intergenic 30.0%
!!! TTTTTTAGTTCCTCCAAATG+AGG - chr1_1:24385694-24385713 Msa0015050:intron 30.0%
ACAAATAGAGGAAAATGGAA+GGG + chr1_1:24385763-24385782 None:intergenic 30.0%
AACAAATAGAGGAAAATGGA+AGG + chr1_1:24385764-24385783 None:intergenic 30.0%
! TGTCGGCATTTTATATTCTA+AGG + chr1_1:24385850-24385869 None:intergenic 30.0%
CAACTTCTGAATCAAATGAT+TGG - chr1_1:24385873-24385892 Msa0015050:intron 30.0%
TATATGTCAGTGACATTAAG+AGG - chr1_1:24385924-24385943 Msa0015050:intron 30.0%
! GTTTTTGAATGGCAGTTTTT+TGG - chr1_1:24386016-24386035 Msa0015050:intron 30.0%
TTAATACGTAAAGTTTGGGA+TGG - chr1_1:24386053-24386072 Msa0015050:intron 30.0%
! TTTTGCATTACAGGTTTAAC+AGG + chr1_1:24386091-24386110 None:intergenic 30.0%
GCAAAAATGACTTCCTTATA+AGG - chr1_1:24386105-24386124 Msa0015050:intron 30.0%
AAAAAAAATGGAGGAGTAAG+TGG - chr1_1:24386256-24386275 Msa0015050:intron 30.0%
TATAAAATCCTCCTCATTTG+GGG - chr1_1:24386334-24386353 Msa0015050:intron 30.0%
GGGTAGCTAAAAAATTGTAT+TGG - chr1_1:24386354-24386373 Msa0015050:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG - chr1_1:24386360-24386379 Msa0015050:intron 30.0%
! AAGCCTTAAGGTTGATTTAT+TGG - chr1_1:24386597-24386616 Msa0015050:intron 30.0%
! AGCCTTAAGGTTGATTTATT+GGG - chr1_1:24386598-24386617 Msa0015050:intron 30.0%
TTCCCAATAAATCAACCTTA+AGG + chr1_1:24386603-24386622 None:intergenic 30.0%
TTGATTTATTGGGAATACCT+TGG - chr1_1:24386608-24386627 Msa0015050:intron 30.0%
ATAAATAGTCTTTGTCTCCA+AGG + chr1_1:24386628-24386647 None:intergenic 30.0%
! CTTGTACATTAGAGTTTTCA+GGG - chr1_1:24386651-24386670 Msa0015050:intron 30.0%
ATATTATCTGTATCGTTCCT+TGG - chr1_1:24386940-24386959 Msa0015050:intron 30.0%
!!! GCTTCTCATTACTTTTTCTT+TGG + chr1_1:24387052-24387071 None:intergenic 30.0%
!! AACATTTTCTCTTGTTTCAG+TGG - chr1_1:24387196-24387215 Msa0015050:intron 30.0%
! GTTAAAATGAAGCCAGTTTT+TGG + chr1_1:24387288-24387307 None:intergenic 30.0%
! TTTTGAGCATGTTATTCATC+TGG - chr1_1:24387329-24387348 Msa0015050:intron 30.0%
AACAAAGACTCAGAGAAAAA+AGG + chr1_1:24387393-24387412 None:intergenic 30.0%
! TTGGGAGGAATTTTACATAA+TGG - chr1_1:24387437-24387456 Msa0015050:intron 30.0%
!! CTTTTGGTTGACAGTATAAT+AGG - chr1_1:24387772-24387791 Msa0015050:CDS 30.0%
GAAGTATATATTAACACGCT+GGG + chr1_1:24387798-24387817 None:intergenic 30.0%
TGAAGTATATATTAACACGC+TGG + chr1_1:24387799-24387818 None:intergenic 30.0%
TTTAAGTGGTTGTGTATATC+TGG - chr1_1:24387900-24387919 Msa0015050:CDS 30.0%
ATAAAAATATTAACTGCCCC+CGG + chr1_1:24387950-24387969 None:intergenic 30.0%
TCCGATGAATTTCCGATTAA+CGG + chr1_1:24380896-24380915 None:intergenic 35.0%
AGAATATCAAGAATCACCAC+CGG + chr1_1:24381088-24381107 None:intergenic 35.0%
TGGTGATTCTTGATATTCTG+TGG - chr1_1:24381089-24381108 Msa0015050:three_prime_UTR 35.0%
TTTCGTGTTTATTATTGCGG+CGG - chr1_1:24381114-24381133 Msa0015050:exon 35.0%
!!! GTACTGTGTTGATTTTGAGT+CGG - chr1_1:24381137-24381156 Msa0015050:CDS 35.0%
!!! TTGTTTTGAGTATAGGAGAC+GGG - chr1_1:24381237-24381256 Msa0015050:CDS 35.0%
! GGATTTGAGCTTTGATTCAA+TGG - chr1_1:24381321-24381340 Msa0015050:intron 35.0%
TTCTGGACAGTATGTGAATT+TGG - chr1_1:24381348-24381367 Msa0015050:intron 35.0%
CTCTATTATAGGAGTTTACG+AGG - chr1_1:24381469-24381488 Msa0015050:intron 35.0%
! AAGTTGATCCTAACATGAAC+CGG - chr1_1:24381612-24381631 Msa0015050:intron 35.0%
AGCATAGCTACTTAAGTAAC+GGG + chr1_1:24381776-24381795 None:intergenic 35.0%
AATTGCTAATTGAGAACTCC+GGG - chr1_1:24381797-24381816 Msa0015050:CDS 35.0%
AATCTGGATTAAAGGTTTCC+CGG + chr1_1:24381818-24381837 None:intergenic 35.0%
! ATTGTGAAAATAGATGGTGG+AGG - chr1_1:24382009-24382028 Msa0015050:intron 35.0%
GCTCTATTGTGTGATAATTC+AGG + chr1_1:24382052-24382071 None:intergenic 35.0%
CATAGGTACATAAACTTCCA+CGG + chr1_1:24382110-24382129 None:intergenic 35.0%
CTGCAGATAGTAGAAAATAG+CGG + chr1_1:24382326-24382345 None:intergenic 35.0%
!! TCTTTTATTTGGTGGGTCAT+TGG - chr1_1:24382787-24382806 Msa0015050:intron 35.0%
! CACGTGTCTTTTAATACTGA+AGG + chr1_1:24383056-24383075 None:intergenic 35.0%
GGGGAAAACAAATAAGAGAA+AGG + chr1_1:24383082-24383101 None:intergenic 35.0%
GTCATGTTATCGATCTTGTT+GGG - chr1_1:24383131-24383150 Msa0015050:intron 35.0%
! GTGGAAAAAAGAGGATTTTG+AGG - chr1_1:24383223-24383242 Msa0015050:intron 35.0%
AGTCGTGGTGAATTGAAATT+GGG - chr1_1:24383283-24383302 Msa0015050:intron 35.0%
AAATATCTGCAACTGTTTGG+TGG + chr1_1:24383370-24383389 None:intergenic 35.0%
CTTCAACAAAGGTTCATCAA+TGG + chr1_1:24383423-24383442 None:intergenic 35.0%
CATTGATGAACCTTTGTTGA+AGG - chr1_1:24383421-24383440 Msa0015050:intron 35.0%
TCTGTTTCAACCTTCAACAA+AGG + chr1_1:24383434-24383453 None:intergenic 35.0%
TATTTCAATTTGGCTGGAAG+GGG - chr1_1:24383730-24383749 Msa0015050:intron 35.0%
CATCCAATGAAAGTTAGCAA+TGG + chr1_1:24383819-24383838 None:intergenic 35.0%
TGCTAACTTTCATTGGATGA+AGG - chr1_1:24383820-24383839 Msa0015050:intron 35.0%
ATAAGTCCCTCAAAACCAAA+AGG + chr1_1:24383914-24383933 None:intergenic 35.0%
CAGGTTATGTATTGTCTTCT+TGG - chr1_1:24384128-24384147 Msa0015050:intron 35.0%
CTAAACAGATTCATCTCTCA+TGG + chr1_1:24384300-24384319 None:intergenic 35.0%
TGCCGAAAGTTGAATGAATT+TGG - chr1_1:24384352-24384371 Msa0015050:intron 35.0%
AGGCTAAATGAAATGGAAGA+AGG - chr1_1:24384417-24384436 Msa0015050:intron 35.0%
TTTGTTGAGCTTAGCTTAGT+TGG - chr1_1:24384494-24384513 Msa0015050:intron 35.0%
GACAGTGCATAATATATGCA+AGG - chr1_1:24384521-24384540 Msa0015050:intron 35.0%
TGCATAATATATGCAAGGTC+CGG - chr1_1:24384526-24384545 Msa0015050:intron 35.0%
!!! TTTTTTTTTTGGTGGTGGTC+GGG + chr1_1:24384561-24384580 None:intergenic 35.0%
!!! ATCCGTTTTTGGTAGTTAGT+TGG - chr1_1:24384586-24384605 Msa0015050:intron 35.0%
!!! TCCGTTTTTGGTAGTTAGTT+GGG - chr1_1:24384587-24384606 Msa0015050:intron 35.0%
ACCCAACTAACTACCAAAAA+CGG + chr1_1:24384591-24384610 None:intergenic 35.0%
TGTCGTGTTGAGACTTTATT+AGG - chr1_1:24384667-24384686 Msa0015050:CDS 35.0%
AGACTTTATTAGGCTCCTTT+AGG - chr1_1:24384677-24384696 Msa0015050:CDS 35.0%
GACTTTATTAGGCTCCTTTA+GGG - chr1_1:24384678-24384697 Msa0015050:CDS 35.0%
AAGGAGGAAAGTAAAAAGCA+AGG - chr1_1:24384741-24384760 Msa0015050:intron 35.0%
TGATAGACCCACAAATAGAA+CGG - chr1_1:24384766-24384785 Msa0015050:intron 35.0%
! AATACAAGTTCCCCCATTTT+GGG + chr1_1:24385250-24385269 None:intergenic 35.0%
! TAATACAAGTTCCCCCATTT+TGG + chr1_1:24385251-24385270 None:intergenic 35.0%
AAAAATTGTATTGGAGGAGG+GGG + chr1_1:24386363-24386382 None:intergenic 35.0%
AATACAAAACCCTCCTCATT+TGG + chr1_1:24385710-24385729 None:intergenic 35.0%
CAAATAGAGGAAAATGGAAG+GGG + chr1_1:24385762-24385781 None:intergenic 35.0%
GTGGAACAAATAGAGGAAAA+TGG + chr1_1:24385768-24385787 None:intergenic 35.0%
TGATTCAGAAGTTGTACTGT+CGG + chr1_1:24385867-24385886 None:intergenic 35.0%
TCTGAATCAAATGATTGGGA+AGG - chr1_1:24385878-24385897 Msa0015050:intron 35.0%
ACGACACAATAGTTCAATCT+TGG + chr1_1:24385905-24385924 None:intergenic 35.0%
!!! GGAAGTCATTTTTGCATTAC+AGG + chr1_1:24386100-24386119 None:intergenic 35.0%
CATGGATGATATGAAATGGA+AGG - chr1_1:24386151-24386170 Msa0015050:intron 35.0%
!!! TTAGGCTTTGTTTGCGATTT+TGG - chr1_1:24386209-24386228 Msa0015050:intron 35.0%
AGGGTTTGGAAAAAAAATGG+AGG - chr1_1:24386247-24386266 Msa0015050:intron 35.0%
AAGAAATAGAGGACATTGAG+AGG - chr1_1:24386279-24386298 Msa0015050:intron 35.0%
!!! TTTTTTAGCTACCCCAAATG+AGG + chr1_1:24386348-24386367 None:intergenic 35.0%
TTTGGGGGTGAGAAATTTAA+GGG + chr1_1:24386547-24386566 None:intergenic 35.0%
!! TCAACCTTAAGGCTTTGTTT+GGG + chr1_1:24386592-24386611 None:intergenic 35.0%
!! ATCAACCTTAAGGCTTTGTT+TGG + chr1_1:24386593-24386612 None:intergenic 35.0%
! GCTTGTACATTAGAGTTTTC+AGG - chr1_1:24386650-24386669 Msa0015050:intron 35.0%
!! ATTAGAGTTTTCAGGGTTGA+AGG - chr1_1:24386658-24386677 Msa0015050:intron 35.0%
TCTCATACCACAACAACTAT+AGG + chr1_1:24386712-24386731 None:intergenic 35.0%
GATATTTGTATGCCTCATTC+AGG - chr1_1:24386748-24386767 Msa0015050:intron 35.0%
TAACAATGTTGACCTGAATG+AGG + chr1_1:24386763-24386782 None:intergenic 35.0%
GGTCAACATTGTTAACTTCT+AGG - chr1_1:24386769-24386788 Msa0015050:intron 35.0%
TGGGATAGCAAATCATATCA+AGG + chr1_1:24386814-24386833 None:intergenic 35.0%
TTCACAATCTACCAAGTTGT+GGG + chr1_1:24386833-24386852 None:intergenic 35.0%
ATTCACAATCTACCAAGTTG+TGG + chr1_1:24386834-24386853 None:intergenic 35.0%
! GCTTAATGTCTCTCCTTTTA+TGG - chr1_1:24386962-24386981 Msa0015050:intron 35.0%
! TAATGTCTCTCCTTTTATGG+TGG - chr1_1:24386965-24386984 Msa0015050:intron 35.0%
! TTTTCGTCAACCACCATAAA+AGG + chr1_1:24386978-24386997 None:intergenic 35.0%
!! AAGCTTGCTGATAATACACA+AGG - chr1_1:24387068-24387087 Msa0015050:intron 35.0%
TCAATCATTATTCCTCCAAC+AGG + chr1_1:24387095-24387114 None:intergenic 35.0%
AAGACTCAGAGAAAAAAGGA+TGG + chr1_1:24387389-24387408 None:intergenic 35.0%
ATTTGTGTGTGGTAAACTGT+AGG - chr1_1:24387530-24387549 Msa0015050:CDS 35.0%
AAGATGTTATACTTGCAGAG+GGG + chr1_1:24387672-24387691 None:intergenic 35.0%
CAAGATGTTATACTTGCAGA+GGG + chr1_1:24387673-24387692 None:intergenic 35.0%
TCAAGATGTTATACTTGCAG+AGG + chr1_1:24387674-24387693 None:intergenic 35.0%
! TTGTTATGGTGGCTTTTAAG+TGG - chr1_1:24387886-24387905 Msa0015050:CDS 35.0%
TATATCTGGTCATTGTACAC+CGG - chr1_1:24387914-24387933 Msa0015050:CDS 35.0%
GCCGTTAATCGGAAATTCAT+CGG - chr1_1:24380892-24380911 Msa0015050:three_prime_UTR 40.0%
TTCGTGTTTATTATTGCGGC+GGG - chr1_1:24381115-24381134 Msa0015050:exon 40.0%
CCTAAAATCCACAACCTAAG+CGG + chr1_1:24381181-24381200 None:intergenic 40.0%
!! CGCTTAGGTTGTGGATTTTA+GGG - chr1_1:24381179-24381198 Msa0015050:CDS 40.0%
! GAATGACAATGGTGGTAATG+TGG - chr1_1:24381279-24381298 Msa0015050:CDS 40.0%
TATGTGAATTTGGCGCAGTA+CGG - chr1_1:24381358-24381377 Msa0015050:intron 40.0%
AGTTGATCCTAACATGAACC+GGG - chr1_1:24381613-24381632 Msa0015050:intron 40.0%
! GTAACGGGACTTGAAAACTA+GGG + chr1_1:24381761-24381780 None:intergenic 40.0%
! AGTAACGGGACTTGAAAACT+AGG + chr1_1:24381762-24381781 None:intergenic 40.0%
!!! TTTTAGCTTCTCAGTAGCTG+AGG - chr1_1:24381858-24381877 Msa0015050:intron 40.0%
! TTTAGCTTCTCAGTAGCTGA+GGG - chr1_1:24381859-24381878 Msa0015050:intron 40.0%
AAATCTGTCTCAAAGTGCAC+TGG - chr1_1:24381932-24381951 Msa0015050:intron 40.0%
AATCTGTCTCAAAGTGCACT+GGG - chr1_1:24381933-24381952 Msa0015050:intron 40.0%
CGTGGAAGTTTATGTACCTA+TGG - chr1_1:24382108-24382127 Msa0015050:intron 40.0%
GCAACACCCTATTTAGTACT+AGG - chr1_1:24382233-24382252 Msa0015050:intron 40.0%
CAGATGACAATTGACAACAC+CGG - chr1_1:24382343-24382362 Msa0015050:intron 40.0%
! TCCTTTTGTTCCTCGTAGTA+TGG - chr1_1:24382732-24382751 Msa0015050:intron 40.0%
AAATGCTTTGCCATACTACG+AGG + chr1_1:24382745-24382764 None:intergenic 40.0%
! TCGTAGTATGGCAAAGCATT+TGG - chr1_1:24382744-24382763 Msa0015050:intron 40.0%
GTGGGTCATTGGATTCTATT+GGG - chr1_1:24382798-24382817 Msa0015050:intron 40.0%
TTCTATTGGGTATCAGCTGA+TGG - chr1_1:24382811-24382830 Msa0015050:intron 40.0%
AGTAGAGGTTAGGAGAATCA+TGG + chr1_1:24382849-24382868 None:intergenic 40.0%
ATGATTCTCCTAACCTCTAC+TGG - chr1_1:24382848-24382867 Msa0015050:intron 40.0%
GATAACATGACGAGCAGAAA+GGG + chr1_1:24383122-24383141 None:intergenic 40.0%
CGTCATGTTATCGATCTTGT+TGG - chr1_1:24383130-24383149 Msa0015050:intron 40.0%
ATAGGAAACTGTGAGGGATA+TGG - chr1_1:24383174-24383193 Msa0015050:intron 40.0%
TAGGAAACTGTGAGGGATAT+GGG - chr1_1:24383175-24383194 Msa0015050:intron 40.0%
CAGTCGTGGTGAATTGAAAT+TGG - chr1_1:24383282-24383301 Msa0015050:intron 40.0%
TTAGCCTATAAGACAGTGAC+AGG + chr1_1:24383585-24383604 None:intergenic 40.0%
! AGTAATGAATGTGACTTGCC+TGG + chr1_1:24384263-24384282 None:intergenic 40.0%
! TGAGCTTAGCTTAGTTGGTA+TGG - chr1_1:24384499-24384518 Msa0015050:intron 40.0%
GCATAATATATGCAAGGTCC+GGG - chr1_1:24384527-24384546 Msa0015050:intron 40.0%
CATAATATATGCAAGGTCCG+GGG - chr1_1:24384528-24384547 Msa0015050:intron 40.0%
GAACTCTCCGTTCTATTTGT+GGG + chr1_1:24384776-24384795 None:intergenic 40.0%
TGAACTCTCCGTTCTATTTG+TGG + chr1_1:24384777-24384796 None:intergenic 40.0%
TCATAATACACCCCCCAAAA+TGG - chr1_1:24385234-24385253 Msa0015050:intron 40.0%
CATAATACACCCCCCAAAAT+GGG - chr1_1:24385235-24385254 Msa0015050:intron 40.0%
ATAATACACCCCCCAAAATG+GGG - chr1_1:24385236-24385255 Msa0015050:intron 40.0%
! ATACAAGTTCCCCCATTTTG+GGG + chr1_1:24385249-24385268 None:intergenic 40.0%
AATGGGGGAACTTGTATTAG+AGG - chr1_1:24385252-24385271 Msa0015050:intron 40.0%
AACTCCCAAACAAAGCCTAA+GGG + chr1_1:24385466-24385485 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG + chr1_1:24385467-24385486 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr1_1:24385466-24385485 Msa0015050:intron 40.0%
! TTTGAGGGGTGCAAAATATG+AGG - chr1_1:24385509-24385528 Msa0015050:intron 40.0%
! TTTAGTTCCTCCAAATGAGG+AGG - chr1_1:24385697-24385716 Msa0015050:intron 40.0%
TTAGTTCCTCCAAATGAGGA+GGG - chr1_1:24385698-24385717 Msa0015050:intron 40.0%
TGAGCAAGTGGAACAAATAG+AGG + chr1_1:24385775-24385794 None:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG + chr1_1:24385832-24385851 None:intergenic 40.0%
! AGCCATGTGTGGTTTTTGAA+TGG - chr1_1:24386005-24386024 Msa0015050:intron 40.0%
TGCCATTCAAAAACCACACA+TGG + chr1_1:24386010-24386029 None:intergenic 40.0%
GGATGATATGAAATGGAAGG+CGG - chr1_1:24386154-24386173 Msa0015050:intron 40.0%
!!! GCTTTGTTTGCGATTTTGGA+GGG - chr1_1:24386213-24386232 Msa0015050:intron 40.0%
!! CTTTGTTTGCGATTTTGGAG+GGG - chr1_1:24386214-24386233 Msa0015050:intron 40.0%
GGGAGGGTTTGGAAAAAAAA+TGG - chr1_1:24386244-24386263 Msa0015050:intron 40.0%
GGAGTAAGTGGAAGAAATAG+AGG - chr1_1:24386268-24386287 Msa0015050:intron 40.0%
AAATAGAGGACATTGAGAGG+AGG - chr1_1:24386282-24386301 Msa0015050:intron 40.0%
AATAGAGGACATTGAGAGGA+GGG - chr1_1:24386283-24386302 Msa0015050:intron 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr1_1:24386367-24386386 Msa0015050:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG - chr1_1:24386368-24386387 Msa0015050:intron 40.0%
! CTTTGGGGGTGAGAAATTTA+AGG + chr1_1:24386548-24386567 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG + chr1_1:24386585-24386604 None:intergenic 40.0%
AACTCCCAAACAAAGCCTTA+AGG - chr1_1:24386585-24386604 Msa0015050:intron 40.0%
!! AGTTTTCAGGGTTGAAGGTA+AGG - chr1_1:24386663-24386682 Msa0015050:intron 40.0%
GAGCTATCCTATAGTTGTTG+TGG - chr1_1:24386702-24386721 Msa0015050:intron 40.0%
!! TGATTTGCTATCCCACAACT+TGG - chr1_1:24386819-24386838 Msa0015050:intron 40.0%
AAAGGAGAGACATTAAGCCA+AGG + chr1_1:24386960-24386979 None:intergenic 40.0%
GATAATACACAAGGACCTGT+TGG - chr1_1:24387077-24387096 Msa0015050:intron 40.0%
! ATTTAGTGCTGGAGAACAGA+AGG + chr1_1:24387230-24387249 None:intergenic 40.0%
TCAGCTATTGCACTTCACAT+TGG - chr1_1:24387418-24387437 Msa0015050:intron 40.0%
CAGCTATTGCACTTCACATT+GGG - chr1_1:24387419-24387438 Msa0015050:intron 40.0%
GAACTAAGACAACTTCCTTG+TGG - chr1_1:24387591-24387610 Msa0015050:CDS 40.0%
AGATGTTATACTTGCAGAGG+GGG + chr1_1:24387671-24387690 None:intergenic 40.0%
ATCTTGAAAAGTAGCAGCCA+TGG - chr1_1:24387687-24387706 Msa0015050:intron 40.0%
!! AAGTTTCTAGCAGCCTTGTT+GGG - chr1_1:24387738-24387757 Msa0015050:CDS 40.0%
! TTGGGGAATTTGCATGCTTT+TGG - chr1_1:24387756-24387775 Msa0015050:CDS 40.0%
ATACTTCAGTACAGGTCTCT+TGG - chr1_1:24387811-24387830 Msa0015050:CDS 40.0%
GAATTTCCGATTAACGGCGT+CGG + chr1_1:24380890-24380909 None:intergenic 45.0%
!! CCGCTTAGGTTGTGGATTTT+AGG - chr1_1:24381178-24381197 Msa0015050:CDS 45.0%
! GACAATGGTGGTAATGTGGT+TGG - chr1_1:24381283-24381302 Msa0015050:CDS 45.0%
! AATGGTGGTAATGTGGTTGG+AGG - chr1_1:24381286-24381305 Msa0015050:intron 45.0%
!! ACGGTGATGATGGTTCTACA+AGG - chr1_1:24381377-24381396 Msa0015050:intron 45.0%
GTTGATCCTAACATGAACCG+GGG - chr1_1:24381614-24381633 Msa0015050:intron 45.0%
!! ACTCTGGCTTTCGGTGAATA+TGG - chr1_1:24381707-24381726 Msa0015050:CDS 45.0%
!! CTCTGGCTTTCGGTGAATAT+GGG - chr1_1:24381708-24381727 Msa0015050:CDS 45.0%
GACTTGAAAACTAGGGTGCA+TGG + chr1_1:24381754-24381773 None:intergenic 45.0%
TTAGCTTCTCAGTAGCTGAG+GGG - chr1_1:24381860-24381879 Msa0015050:intron 45.0%
ATAGCGACACTGTAGTGTAG+TGG - chr1_1:24382185-24382204 Msa0015050:intron 45.0%
CAATTGACAACACCGGTAAG+AGG - chr1_1:24382350-24382369 Msa0015050:intron 45.0%
TGTGTACTCAGTCCTCTTAC+CGG + chr1_1:24382365-24382384 None:intergenic 45.0%
GCCATACTACGAGGAACAAA+AGG + chr1_1:24382736-24382755 None:intergenic 45.0%
GGTGGGTCATTGGATTCTAT+TGG - chr1_1:24382797-24382816 Msa0015050:intron 45.0%
AGAGCAAACCAGTAGAGGTT+AGG + chr1_1:24382859-24382878 None:intergenic 45.0%
AAGGGCCAGAGGTAAACAAT+CGG + chr1_1:24383104-24383123 None:intergenic 45.0%
CGATAACATGACGAGCAGAA+AGG + chr1_1:24383123-24383142 None:intergenic 45.0%
!!! TGTTGGGTTTTGAGTCCTCT+TGG - chr1_1:24383147-24383166 Msa0015050:intron 45.0%
AGGAAACTGTGAGGGATATG+GGG - chr1_1:24383176-24383195 Msa0015050:intron 45.0%
!! AAGCTGGTGGTGGAAAAAAG+AGG - chr1_1:24383214-24383233 Msa0015050:intron 45.0%
AGGAGAGAGAAAGAGAGAGA+GGG - chr1_1:24383464-24383483 Msa0015050:intron 45.0%
AGAGAGAGGGAAAAGAGAGA+GGG - chr1_1:24383477-24383496 Msa0015050:intron 45.0%
GACACCTGTCACTGTCTTAT+AGG - chr1_1:24383578-24383597 Msa0015050:intron 45.0%
TGACTGTAGGGGAAAAGAGA+AGG - chr1_1:24383881-24383900 Msa0015050:intron 45.0%
!!! TCTCGTGCCTTTTGGTTTTG+AGG - chr1_1:24383904-24383923 Msa0015050:intron 45.0%
!!! CTCGTGCCTTTTGGTTTTGA+GGG - chr1_1:24383905-24383924 Msa0015050:intron 45.0%
!!! TGTCGTTTTCTGTATTGCGC+TGG - chr1_1:24384167-24384186 Msa0015050:intron 45.0%
! TACAGAAGCGCAATGATGCA+TGG + chr1_1:24384228-24384247 None:intergenic 45.0%
! GGTAGTTAGTTGGGTTGTCT+TGG - chr1_1:24384596-24384615 Msa0015050:intron 45.0%
TCTGTTTGGGAGTCTAGGAA+GGG - chr1_1:24384701-24384720 Msa0015050:CDS 45.0%
ACTTAGGAGTTTGGAAGGGA+GGG + chr1_1:24385093-24385112 None:intergenic 45.0%
CTCCACTTAGGAGTTTGGAA+GGG + chr1_1:24385097-24385116 None:intergenic 45.0%
TAAGGCTCCACTTAGGAGTT+TGG + chr1_1:24385102-24385121 None:intergenic 45.0%
! TGGAGCCTTATACCCTGTTT+GGG - chr1_1:24385112-24385131 Msa0015050:intron 45.0%
GAACTCCCAAACAGGGTATA+AGG + chr1_1:24385120-24385139 None:intergenic 45.0%
TATACCCTGTTTGGGAGTTC+AGG - chr1_1:24385120-24385139 Msa0015050:intron 45.0%
TTCTCCTGAACTCCCAAACA+GGG + chr1_1:24385127-24385146 None:intergenic 45.0%
TTTGGGAGTTCAGGAGAAGA+TGG - chr1_1:24385129-24385148 Msa0015050:intron 45.0%
TTGGGAGTTCAGGAGAAGAT+GGG - chr1_1:24385130-24385149 Msa0015050:intron 45.0%
TGGAACAAAGGAAGGAGGAA+AGG - chr1_1:24385160-24385179 Msa0015050:intron 45.0%
GGAACAAAGGAAGGAGGAAA+GGG - chr1_1:24385161-24385180 Msa0015050:intron 45.0%
TAATACACCCCCCAAAATGG+GGG - chr1_1:24385237-24385256 Msa0015050:intron 45.0%
! TACAAGTTCCCCCATTTTGG+GGG + chr1_1:24385248-24385267 None:intergenic 45.0%
GGGGAACTTGTATTAGAGGA+GGG - chr1_1:24385256-24385275 Msa0015050:intron 45.0%
! TAAGGGTGTGTTTGGGAGTT+TGG + chr1_1:24385449-24385468 None:intergenic 45.0%
AAACTCCCAAACACACCCTT+AGG - chr1_1:24385448-24385467 Msa0015050:intron 45.0%
! CAAAGCCTAAGGGTGTGTTT+GGG + chr1_1:24385456-24385475 None:intergenic 45.0%
! ACAAAGCCTAAGGGTGTGTT+TGG + chr1_1:24385457-24385476 None:intergenic 45.0%
!! ACACACCCTTAGGCTTTGTT+TGG - chr1_1:24385458-24385477 Msa0015050:intron 45.0%
!! CACACCCTTAGGCTTTGTTT+GGG - chr1_1:24385459-24385478 Msa0015050:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr1_1:24385470-24385489 Msa0015050:intron 45.0%
TTGGAGGGTAAGGAAAGGAA+CGG - chr1_1:24385485-24385504 Msa0015050:intron 45.0%
TAAGGAAAGGAACGGCTTTG+AGG - chr1_1:24385493-24385512 Msa0015050:intron 45.0%
! AAGGAAAGGAACGGCTTTGA+GGG - chr1_1:24385494-24385513 Msa0015050:intron 45.0%
ACAAAACCCTCCTCATTTGG+AGG + chr1_1:24385707-24385726 None:intergenic 45.0%
TAGAGGAAAATGGAAGGGGA+GGG + chr1_1:24385758-24385777 None:intergenic 45.0%
ATAGAGGAAAATGGAAGGGG+AGG + chr1_1:24385759-24385778 None:intergenic 45.0%
GGGAAAAAGGAATGAGCAAG+TGG + chr1_1:24385787-24385806 None:intergenic 45.0%
TTTGCGAGTTTGGAGGGAAA+GGG + chr1_1:24385822-24385841 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr1_1:24385828-24385847 None:intergenic 45.0%
!!! GGCTTTGTTTGCGATTTTGG+AGG - chr1_1:24386212-24386231 Msa0015050:intron 45.0%
ATAGAGGACATTGAGAGGAG+GGG - chr1_1:24386284-24386303 Msa0015050:intron 45.0%
! ACATTGAGAGGAGGGGTTTT+GGG - chr1_1:24386291-24386310 Msa0015050:intron 45.0%
TTTAGCTACCCCAAATGAGG+AGG + chr1_1:24386345-24386364 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr1_1:24385471-24385490 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr1_1:24385470-24385489 None:intergenic 45.0%
CAGGGTTGAAGGTAAGGTTA+AGG - chr1_1:24386669-24386688 Msa0015050:intron 45.0%
TATGGTGGTTGACGAAAAGC+AGG - chr1_1:24386980-24386999 Msa0015050:intron 45.0%
AATACACAAGGACCTGTTGG+AGG - chr1_1:24387080-24387099 Msa0015050:intron 45.0%
ACAACATACCGCATCCTCAT+CGG + chr1_1:24387153-24387172 None:intergenic 45.0%
! TCTCTTGTTTCAGTGGACAG+TGG - chr1_1:24387203-24387222 Msa0015050:intron 45.0%
!!! CCAGTTTTTGGAGCATCAAG+TGG + chr1_1:24387276-24387295 None:intergenic 45.0%
CCACTTGATGCTCCAAAAAC+TGG - chr1_1:24387273-24387292 Msa0015050:intron 45.0%
CTATTGCACTTCACATTGGG+AGG - chr1_1:24387422-24387441 Msa0015050:intron 45.0%
TGCCTTTCTGCCTATGATGA+CGG - chr1_1:24387564-24387583 Msa0015050:CDS 45.0%
TAGTTCAACCCCGTCATCAT+AGG + chr1_1:24387577-24387596 None:intergenic 45.0%
CAGTGAAAATGGTGACCACA+AGG + chr1_1:24387609-24387628 None:intergenic 45.0%
CCACACAGGTACAGTGAAAA+TGG + chr1_1:24387620-24387639 None:intergenic 45.0%
! CCATTTTCACTGTACCTGTG+TGG - chr1_1:24387617-24387636 Msa0015050:CDS 45.0%
ACTGTACCTGTGTGGACAAA+TGG - chr1_1:24387625-24387644 Msa0015050:CDS 45.0%
TCTACACTTCCTCTTGACCA+TGG + chr1_1:24387707-24387726 None:intergenic 45.0%
AAGGCTGCTAGAAACTTCTC+TGG + chr1_1:24387735-24387754 None:intergenic 45.0%
!! GAAGTTTCTAGCAGCCTTGT+TGG - chr1_1:24387737-24387756 Msa0015050:CDS 45.0%
!! AGTTTCTAGCAGCCTTGTTG+GGG - chr1_1:24387739-24387758 Msa0015050:CDS 45.0%
AGCATGCAAATTCCCCAACA+AGG + chr1_1:24387754-24387773 None:intergenic 45.0%
! GTACACCGGCAATAGTTTTC+CGG - chr1_1:24387928-24387947 Msa0015050:CDS 45.0%
! TACACCGGCAATAGTTTTCC+GGG - chr1_1:24387929-24387948 Msa0015050:CDS 45.0%
TCATCGGACGAATCCAACTC+CGG - chr1_1:24380908-24380927 Msa0015050:three_prime_UTR 50.0%
CGGTTTCTACGACAAGCAAG+CGG - chr1_1:24380971-24380990 Msa0015050:three_prime_UTR 50.0%
GGTTTCTACGACAAGCAAGC+GGG - chr1_1:24380972-24380991 Msa0015050:three_prime_UTR 50.0%
! TGAACCGTCGATGATGGTGA+GGG - chr1_1:24381009-24381028 Msa0015050:three_prime_UTR 50.0%
TGGAAGAACGGCAAAGCGAT+TGG - chr1_1:24381050-24381069 Msa0015050:three_prime_UTR 50.0%
GGAAGAACGGCAAAGCGATT+GGG - chr1_1:24381051-24381070 Msa0015050:three_prime_UTR 50.0%
TTGAGTATAGGAGACGGGTG+CGG - chr1_1:24381242-24381261 Msa0015050:CDS 50.0%
GGAGAGGTGAATGACAATGG+TGG - chr1_1:24381271-24381290 Msa0015050:CDS 50.0%
ATCCTAACATGAACCGGGGT+TGG - chr1_1:24381618-24381637 Msa0015050:intron 50.0%
TCCTAACATGAACCGGGGTT+GGG - chr1_1:24381619-24381638 Msa0015050:intron 50.0%
TTTGCGTGGGAACAGAGTTG+TGG - chr1_1:24382588-24382607 Msa0015050:intron 50.0%
GGAACAGAGTTGTGGTCTGA+GGG - chr1_1:24382596-24382615 Msa0015050:intron 50.0%
GAGAGAGAGCAAACCAGTAG+AGG + chr1_1:24382864-24382883 None:intergenic 50.0%
ACACACACACACACACACAC+AGG - chr1_1:24382910-24382929 Msa0015050:intron 50.0%
GCGCGTACACACACACATAT+GGG - chr1_1:24382942-24382961 Msa0015050:intron 50.0%
TTCCCCCGATTGTTTACCTC+TGG - chr1_1:24383096-24383115 Msa0015050:intron 50.0%
AGGGCCAGAGGTAAACAATC+GGG + chr1_1:24383103-24383122 None:intergenic 50.0%
!!! TGGGTTTTGAGTCCTCTTGG+TGG - chr1_1:24383150-24383169 Msa0015050:intron 50.0%
! TTGAGTCCTCTTGGTGGCAT+AGG - chr1_1:24383156-24383175 Msa0015050:intron 50.0%
CAGTTTCCTATGCCACCAAG+AGG + chr1_1:24383165-24383184 None:intergenic 50.0%
TGGTGGCATAGGAAACTGTG+AGG - chr1_1:24383167-24383186 Msa0015050:intron 50.0%
GGTGGCATAGGAAACTGTGA+GGG - chr1_1:24383168-24383187 Msa0015050:intron 50.0%
GGAAACTGTGAGGGATATGG+GGG - chr1_1:24383177-24383196 Msa0015050:intron 50.0%
GATATGGGGGCCTTGAAGAT+GGG - chr1_1:24383190-24383209 Msa0015050:intron 50.0%
CACCAGCTTTCCCATCTTCA+AGG + chr1_1:24383203-24383222 None:intergenic 50.0%
CTTGAAGATGGGAAAGCTGG+TGG - chr1_1:24383201-24383220 Msa0015050:intron 50.0%
!! GATGAAGGAGCATCGACATC+TGG + chr1_1:24383319-24383338 None:intergenic 50.0%
GAGGAGAGAGAAAGAGAGAG+AGG - chr1_1:24383463-24383482 Msa0015050:intron 50.0%
GAGAGAGAGGGAAAAGAGAG+AGG - chr1_1:24383476-24383495 Msa0015050:intron 50.0%
GGGGTTTCTTTCCGTAACAC+CGG - chr1_1:24383749-24383768 Msa0015050:intron 50.0%
ATGCCACTGTTGGAAGGAGA+TGG - chr1_1:24383848-24383867 Msa0015050:intron 50.0%
TGCCACTGTTGGAAGGAGAT+GGG - chr1_1:24383849-24383868 Msa0015050:intron 50.0%
! AGAGAAGGTCTCGTGCCTTT+TGG - chr1_1:24383896-24383915 Msa0015050:intron 50.0%
! ATTGCGCTGGCATGCATCAT+TGG - chr1_1:24384180-24384199 Msa0015050:intron 50.0%
GCATGGAAGGCAACAGCAAA+CGG + chr1_1:24384211-24384230 None:intergenic 50.0%
GAAGCGCAATGATGCATGGA+AGG + chr1_1:24384224-24384243 None:intergenic 50.0%
TCTGTATGCAGTTGCAGACC+AGG - chr1_1:24384242-24384261 Msa0015050:intron 50.0%
!! AGGCTCCTTTAGGGTCTGTT+TGG - chr1_1:24384687-24384706 Msa0015050:CDS 50.0%
!! GGCTCCTTTAGGGTCTGTTT+GGG - chr1_1:24384688-24384707 Msa0015050:CDS 50.0%
GACTCCCAAACAGACCCTAA+AGG + chr1_1:24384695-24384714 None:intergenic 50.0%
TAGGGTCTGTTTGGGAGTCT+AGG - chr1_1:24384696-24384715 Msa0015050:CDS 50.0%
GTCTGTTTGGGAGTCTAGGA+AGG - chr1_1:24384700-24384719 Msa0015050:CDS 50.0%
TTTGGGAGTCTAGGAAGGGA+GGG - chr1_1:24384705-24384724 Msa0015050:CDS 50.0%
!! GAAGGGAGGGCTTTGGAAAA+AGG - chr1_1:24384718-24384737 Msa0015050:intron 50.0%
!! GGAGGGCTTTGGAAAAAGGA+AGG - chr1_1:24384722-24384741 Msa0015050:intron 50.0%
!! GGGCTTTGGAAAAAGGAAGG+AGG - chr1_1:24384725-24384744 Msa0015050:intron 50.0%
!! TGTTAGCTTGTAGAGGCTGC+TGG - chr1_1:24384929-24384948 Msa0015050:intron 50.0%
AAGGGAGGGAATGGCTTTCA+GGG + chr1_1:24385079-24385098 None:intergenic 50.0%
CACTTAGGAGTTTGGAAGGG+AGG + chr1_1:24385094-24385113 None:intergenic 50.0%
CTCCCTTCCAAACTCCTAAG+TGG - chr1_1:24385092-24385111 Msa0015050:intron 50.0%
GCTCCACTTAGGAGTTTGGA+AGG + chr1_1:24385098-24385117 None:intergenic 50.0%
CAGGGTATAAGGCTCCACTT+AGG + chr1_1:24385109-24385128 None:intergenic 50.0%
! GTGGAGCCTTATACCCTGTT+TGG - chr1_1:24385111-24385130 Msa0015050:intron 50.0%
CTTCTCCTGAACTCCCAAAC+AGG + chr1_1:24385128-24385147 None:intergenic 50.0%
GAGTTCAGGAGAAGATGGGA+GGG - chr1_1:24385134-24385153 Msa0015050:intron 50.0%
!! ATGGGAGGGCTTTGGAACAA+AGG - chr1_1:24385148-24385167 Msa0015050:intron 50.0%
!! GAGGGCTTTGGAACAAAGGA+AGG - chr1_1:24385152-24385171 Msa0015050:intron 50.0%
!! GGCTTTGGAACAAAGGAAGG+AGG - chr1_1:24385155-24385174 Msa0015050:intron 50.0%
GAAGGAGGAAAGGGAAGAGA+CGG - chr1_1:24385170-24385189 Msa0015050:intron 50.0%
AGGGAAGAGACGGAAGACTT+TGG - chr1_1:24385180-24385199 Msa0015050:intron 50.0%
GGGAAGAGACGGAAGACTTT+GGG - chr1_1:24385181-24385200 Msa0015050:intron 50.0%
AAGAGACGGAAGACTTTGGG+AGG - chr1_1:24385184-24385203 Msa0015050:intron 50.0%
! ACAAGTTCCCCCATTTTGGG+GGG + chr1_1:24385247-24385266 None:intergenic 50.0%
GGGGGAACTTGTATTAGAGG+AGG - chr1_1:24385255-24385274 Msa0015050:intron 50.0%
TTTGGGAGTTTGGAGAGGAG+GGG + chr1_1:24385439-24385458 None:intergenic 50.0%
GTTTGGGAGTTTGGAGAGGA+GGG + chr1_1:24385440-24385459 None:intergenic 50.0%
TGTTTGGGAGTTTGGAGAGG+AGG + chr1_1:24385441-24385460 None:intergenic 50.0%
GTGTGTTTGGGAGTTTGGAG+AGG + chr1_1:24385444-24385463 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr1_1:24385469-24385488 Msa0015050:intron 50.0%
GTTTGGGAGTTTGGAGGGTA+AGG - chr1_1:24385475-24385494 Msa0015050:intron 50.0%
GGAGTTTGGAGGGTAAGGAA+AGG - chr1_1:24385480-24385499 Msa0015050:intron 50.0%
!! AGGAAAGGAACGGCTTTGAG+GGG - chr1_1:24385495-24385514 Msa0015050:intron 50.0%
! GTATTGGAGGAGGGGGATTT+TGG + chr1_1:24385672-24385691 None:intergenic 50.0%
AAATGGAAGGGGAGGGCTTT+GGG + chr1_1:24385751-24385770 None:intergenic 50.0%
AAAATGGAAGGGGAGGGCTT+TGG + chr1_1:24385752-24385771 None:intergenic 50.0%
GTTTGCGAGTTTGGAGGGAA+AGG + chr1_1:24385823-24385842 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr1_1:24385829-24385848 None:intergenic 50.0%
ACAACAGCTACAGCCATGTG+TGG - chr1_1:24385994-24386013 Msa0015050:intron 50.0%
!! GTTTGCGATTTTGGAGGGGA+AGG - chr1_1:24386218-24386237 Msa0015050:intron 50.0%
!! CGATTTTGGAGGGGAAGGTA+GGG - chr1_1:24386223-24386242 Msa0015050:intron 50.0%
!! GATTTTGGAGGGGAAGGTAG+GGG - chr1_1:24386224-24386243 Msa0015050:intron 50.0%
! GACATTGAGAGGAGGGGTTT+TGG - chr1_1:24386290-24386309 Msa0015050:intron 50.0%
! CATTGAGAGGAGGGGTTTTG+GGG - chr1_1:24386292-24386311 Msa0015050:intron 50.0%
!! ATTGAGAGGAGGGGTTTTGG+GGG - chr1_1:24386293-24386312 Msa0015050:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+AGG - chr1_1:24386371-24386390 Msa0015050:intron 50.0%
!!! AGGAGGGTTTTGGGAGGTTT+GGG - chr1_1:24386377-24386396 Msa0015050:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr1_1:24385469-24385488 None:intergenic 50.0%
GTGGTTGACGAAAAGCAGGA+AGG - chr1_1:24386984-24387003 Msa0015050:intron 50.0%
GGCAAGCACGTGTTCAATTG+GGG + chr1_1:24387132-24387151 None:intergenic 50.0%
CGGCAAGCACGTGTTCAATT+GGG + chr1_1:24387133-24387152 None:intergenic 50.0%
TCGGCAAGCACGTGTTCAAT+TGG + chr1_1:24387134-24387153 None:intergenic 50.0%
GCCTTTCTGCCTATGATGAC+GGG - chr1_1:24387565-24387584 Msa0015050:CDS 50.0%
! CCTTTCTGCCTATGATGACG+GGG - chr1_1:24387566-24387585 Msa0015050:CDS 50.0%
AAGTAGCAGCCATGGTCAAG+AGG - chr1_1:24387695-24387714 Msa0015050:intron 50.0%
! ACACCGGCAATAGTTTTCCG+GGG - chr1_1:24387930-24387949 Msa0015050:CDS 50.0%
ACGGATCCGACGCCGTTAAT+CGG - chr1_1:24380881-24380900 Msa0015050:three_prime_UTR 55.0%
GAGAATTCTCCGTCCGGAGT+TGG + chr1_1:24380924-24380943 None:intergenic 55.0%
TTCTACGACAAGCAAGCGGG+CGG - chr1_1:24380975-24380994 Msa0015050:three_prime_UTR 55.0%
GATGCGTGAACCGTCGATGA+TGG - chr1_1:24381003-24381022 Msa0015050:three_prime_UTR 55.0%
! GTGAACCGTCGATGATGGTG+AGG - chr1_1:24381008-24381027 Msa0015050:three_prime_UTR 55.0%
GTCTCCCTCACCATCATCGA+CGG + chr1_1:24381016-24381035 None:intergenic 55.0%
! GATGATGGTGAGGGAGACTG+CGG - chr1_1:24381018-24381037 Msa0015050:three_prime_UTR 55.0%
CGATTGGGCGTATTCGAAGC+CGG - chr1_1:24381066-24381085 Msa0015050:three_prime_UTR 55.0%
CGGGGAGAGGTGAATGACAA+TGG - chr1_1:24381268-24381287 Msa0015050:CDS 55.0%
! GGTGGTAATGTGGTTGGAGG+TGG - chr1_1:24381289-24381308 Msa0015050:intron 55.0%
GGTAATGTGGTTGGAGGTGG+TGG - chr1_1:24381292-24381311 Msa0015050:intron 55.0%
! TGGTTGGAGGTGGTGGTAGT+GGG - chr1_1:24381299-24381318 Msa0015050:intron 55.0%
TTGGCGCAGTACGGTGATGA+TGG - chr1_1:24381367-24381386 Msa0015050:intron 55.0%
CCTAACATGAACCGGGGTTG+GGG - chr1_1:24381620-24381639 Msa0015050:intron 55.0%
TGCAAGTTCAACCCCAACCC+CGG + chr1_1:24381634-24381653 None:intergenic 55.0%
!! CGGCTACACTGCGTTTTGAG+AGG + chr1_1:24382090-24382109 None:intergenic 55.0%
CTCAAAACGCAGTGTAGCCG+TGG - chr1_1:24382090-24382109 Msa0015050:intron 55.0%
GGGAACAGAGTTGTGGTCTG+AGG - chr1_1:24382595-24382614 Msa0015050:intron 55.0%
CGCGCGTACACACACACATA+TGG - chr1_1:24382941-24382960 Msa0015050:intron 55.0%
GGCCAGAGGTAAACAATCGG+GGG + chr1_1:24383101-24383120 None:intergenic 55.0%
GGGCCAGAGGTAAACAATCG+GGG + chr1_1:24383102-24383121 None:intergenic 55.0%
GGATATGGGGGCCTTGAAGA+TGG - chr1_1:24383189-24383208 Msa0015050:intron 55.0%
GGCCTTGAAGATGGGAAAGC+TGG - chr1_1:24383198-24383217 Msa0015050:intron 55.0%
GAAGATGGGAAAGCTGGTGG+TGG - chr1_1:24383204-24383223 Msa0015050:intron 55.0%
GAAGTCACAGTCGACAGTCG+TGG - chr1_1:24383268-24383287 Msa0015050:intron 55.0%
GAAGGCTGCAATGCCACTGT+TGG - chr1_1:24383838-24383857 Msa0015050:intron 55.0%
GCTGCAATGCCACTGTTGGA+AGG - chr1_1:24383842-24383861 Msa0015050:intron 55.0%
GCCACTGTTGGAAGGAGATG+GGG - chr1_1:24383850-24383869 Msa0015050:intron 55.0%
TGGGGCTGAGATGTGACTGT+AGG - chr1_1:24383868-24383887 Msa0015050:intron 55.0%
GGGGCTGAGATGTGACTGTA+GGG - chr1_1:24383869-24383888 Msa0015050:intron 55.0%
GGGCTGAGATGTGACTGTAG+GGG - chr1_1:24383870-24383889 Msa0015050:intron 55.0%
GTTTGGGAGTCTAGGAAGGG+AGG - chr1_1:24384704-24384723 Msa0015050:CDS 55.0%
AGTCTAGGAAGGGAGGGCTT+TGG - chr1_1:24384711-24384730 Msa0015050:intron 55.0%
GAGGGAATGGCTTTCAGGGA+GGG + chr1_1:24385075-24385094 None:intergenic 55.0%
GAAGGGAGGGAATGGCTTTC+AGG + chr1_1:24385080-24385099 None:intergenic 55.0%
GGAGTTTGGAAGGGAGGGAA+TGG + chr1_1:24385088-24385107 None:intergenic 55.0%
GGAGTTCAGGAGAAGATGGG+AGG - chr1_1:24385133-24385152 Msa0015050:intron 55.0%
AGGAGAAGATGGGAGGGCTT+TGG - chr1_1:24385140-24385159 Msa0015050:intron 55.0%
! ACGGAAGACTTTGGGAGGAG+AGG - chr1_1:24385189-24385208 Msa0015050:intron 55.0%
! CGGAAGACTTTGGGAGGAGA+GGG - chr1_1:24385190-24385209 Msa0015050:intron 55.0%
! ACTTTGGGAGGAGAGGGCTT+TGG - chr1_1:24385196-24385215 Msa0015050:intron 55.0%
! CTTTGGGAGGAGAGGGCTTT+GGG - chr1_1:24385197-24385216 Msa0015050:intron 55.0%
TTTGGGAGGAGAGGGCTTTG+GGG - chr1_1:24385198-24385217 Msa0015050:intron 55.0%
! GACTTTGGGAGGAGAGGAGA+GGG + chr1_1:24385414-24385433 None:intergenic 55.0%
! AGACTTTGGGAGGAGAGGAG+AGG + chr1_1:24385415-24385434 None:intergenic 55.0%
GGAGAGGAGGGGAAGACTTT+GGG + chr1_1:24385428-24385447 None:intergenic 55.0%
TGGAGAGGAGGGGAAGACTT+TGG + chr1_1:24385429-24385448 None:intergenic 55.0%
! TGGAGGAGGGGGATTTTGGA+GGG + chr1_1:24385668-24385687 None:intergenic 55.0%
! TTGGAGGAGGGGGATTTTGG+AGG + chr1_1:24385669-24385688 None:intergenic 55.0%
AATGGAAGGGGAGGGCTTTG+GGG + chr1_1:24385750-24385769 None:intergenic 55.0%
GAGGGGAAGGCTTGGGAAAA+AGG + chr1_1:24385800-24385819 None:intergenic 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr1_1:24385817-24385836 None:intergenic 55.0%
CGAGTTTGGAGGGAAAGGGA+GGG + chr1_1:24385818-24385837 None:intergenic 55.0%
!! GCGATTTTGGAGGGGAAGGT+AGG - chr1_1:24386222-24386241 Msa0015050:intron 55.0%
!!! TTGAGAGGAGGGGTTTTGGG+GGG - chr1_1:24386294-24386313 Msa0015050:intron 55.0%
!!! GAGGAGGGTTTTGGGAGGTT+TGG - chr1_1:24386376-24386395 Msa0015050:intron 55.0%
!!! AGGGTTTTGGGAGGTTTGGG+TGG - chr1_1:24386380-24386399 Msa0015050:intron 55.0%
!!! GGGTTTTGGGAGGTTTGGGT+GGG - chr1_1:24386381-24386400 Msa0015050:intron 55.0%
!! AGGGGAAGGAATGGCTTTGG+GGG + chr1_1:24386562-24386581 None:intergenic 55.0%
! GAGGGGAAGGAATGGCTTTG+GGG + chr1_1:24386563-24386582 None:intergenic 55.0%
GGAGGGGAAGGAATGGCTTT+GGG + chr1_1:24386564-24386583 None:intergenic 55.0%
TGGAGGGGAAGGAATGGCTT+TGG + chr1_1:24386565-24386584 None:intergenic 55.0%
GGAGTTTGGAGGGGAAGGAA+TGG + chr1_1:24386571-24386590 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + chr1_1:24386576-24386595 None:intergenic 55.0%
TGAACACGTGCTTGCCGATG+AGG - chr1_1:24387136-24387155 Msa0015050:intron 55.0%
CCCCGTCATCATAGGCAGAA+AGG + chr1_1:24387569-24387588 None:intergenic 55.0%
GTGCAGCCATTTGTCCACAC+AGG + chr1_1:24387634-24387653 None:intergenic 55.0%
! CACCGGCAATAGTTTTCCGG+GGG - chr1_1:24387931-24387950 Msa0015050:CDS 55.0%
TGCCCCCGGAAAACTATTGC+CGG + chr1_1:24387936-24387955 None:intergenic 55.0%
CGGACGAATCCAACTCCGGA+CGG - chr1_1:24380912-24380931 Msa0015050:three_prime_UTR 60.0%
CGCACGGAGAATTCTCCGTC+CGG + chr1_1:24380930-24380949 None:intergenic 60.0%
CGGCGGAGCAGTTGGAAGAA+CGG - chr1_1:24381038-24381057 Msa0015050:three_prime_UTR 60.0%
TTGGGCGTATTCGAAGCCGG+TGG - chr1_1:24381069-24381088 Msa0015050:three_prime_UTR 60.0%
CACAACCTAAGCGGCGAGCT+CGG + chr1_1:24381172-24381191 None:intergenic 60.0%
ATAGGAGACGGGTGCGGATG+CGG - chr1_1:24381248-24381267 Msa0015050:CDS 60.0%
! GTGGTTGGAGGTGGTGGTAG+TGG - chr1_1:24381298-24381317 Msa0015050:intron 60.0%
! GGTTGGAGGTGGTGGTAGTG+GGG - chr1_1:24381300-24381319 Msa0015050:intron 60.0%
CCCCAACCCCGGTTCATGTT+AGG + chr1_1:24381623-24381642 None:intergenic 60.0%
TGACGAGCAGAAAGGGCCAG+AGG + chr1_1:24383115-24383134 None:intergenic 60.0%
GCCCCATCTCCTTCCAACAG+TGG + chr1_1:24383854-24383873 None:intergenic 60.0%
GGAGGGAATGGCTTTCAGGG+AGG + chr1_1:24385076-24385095 None:intergenic 60.0%
! GGGGAAGACTTTGGGAGGAG+AGG + chr1_1:24385420-24385439 None:intergenic 60.0%
GAGGAGGGGAAGACTTTGGG+AGG + chr1_1:24385425-24385444 None:intergenic 60.0%
! ATGGAAGGGGAGGGCTTTGG+GGG + chr1_1:24385749-24385768 None:intergenic 60.0%
GGAAAGGGAGGGGAAGGCTT+GGG + chr1_1:24385807-24385826 None:intergenic 60.0%
TTGGAGGGAAAGGGAGGGGA+AGG + chr1_1:24385813-24385832 None:intergenic 60.0%
GCGAGTTTGGAGGGAAAGGG+AGG + chr1_1:24385819-24385838 None:intergenic 60.0%
TTTGGAGGGGAAGGTAGGGG+AGG - chr1_1:24386227-24386246 Msa0015050:intron 60.0%
TTGGAGGGGAAGGTAGGGGA+GGG - chr1_1:24386228-24386247 Msa0015050:intron 60.0%
CGTGCTTGCCGATGAGGATG+CGG - chr1_1:24387142-24387161 Msa0015050:intron 60.0%
TTCTCCGTGCGCCGAGTCTC+CGG - chr1_1:24380939-24380958 Msa0015050:three_prime_UTR 65.0%
GTAGAAACCGCGCCGCTTGC+CGG + chr1_1:24380961-24380980 None:intergenic 65.0%
TACGACAAGCAAGCGGGCGG+AGG - chr1_1:24380978-24380997 Msa0015050:three_prime_UTR 65.0%
GATGGTGAGGGAGACTGCGG+CGG - chr1_1:24381021-24381040 Msa0015050:three_prime_UTR 65.0%
AATCGCCGAGCTCGCCGCTT+AGG - chr1_1:24381164-24381183 Msa0015050:CDS 65.0%
! CGAGCTCGCCGCTTAGGTTG+TGG - chr1_1:24381170-24381189 Msa0015050:CDS 65.0%
TAGGAGACGGGTGCGGATGC+GGG - chr1_1:24381249-24381268 Msa0015050:CDS 65.0%
GGTGGTCGGGATTCGAACCC+CGG + chr1_1:24384548-24384567 None:intergenic 65.0%
!! TGGAAGGGGAGGGCTTTGGG+GGG + chr1_1:24385748-24385767 None:intergenic 65.0%
GGGAAAGGGAGGGGAAGGCT+TGG + chr1_1:24385808-24385827 None:intergenic 65.0%
GGGGAAGGTAGGGGAGGGTT+TGG - chr1_1:24386233-24386252 Msa0015050:intron 65.0%
CTTGCCGGAGACTCGGCGCA+CGG + chr1_1:24380946-24380965 None:intergenic 70.0%
TGCGCCGAGTCTCCGGCAAG+CGG - chr1_1:24380946-24380965 Msa0015050:three_prime_UTR 70.0%
GGAGACTGCGGCGGAGCAGT+TGG - chr1_1:24381030-24381049 Msa0015050:three_prime_UTR 70.0%
AGGAGACGGGTGCGGATGCG+GGG - chr1_1:24381250-24381269 Msa0015050:CDS 70.0%
CGCGCCGCTTGCCGGAGACT+CGG + chr1_1:24380953-24380972 None:intergenic 75.0%
CGAGTCTCCGGCAAGCGGCG+CGG - chr1_1:24380951-24380970 Msa0015050:three_prime_UTR 75.0%
ACGGGTGCGGATGCGGGGAG+AGG - chr1_1:24381255-24381274 Msa0015050:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 24380872 24387984 24380872 ID=Msa0015050;Name=Msa0015050
chr1_1 mRNA 24380872 24387984 24380872 ID=Msa0015050-mRNA-1;Parent=Msa0015050;Name=Msa0015050-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.25|0.4|1|0.25|0.2|5|259|307
chr1_1 exon 24380872 24381304 24380872 ID=Msa0015050-mRNA-1:exon:8352;Parent=Msa0015050-mRNA-1
chr1_1 exon 24381693 24381854 24381693 ID=Msa0015050-mRNA-1:exon:8351;Parent=Msa0015050-mRNA-1
chr1_1 exon 24384605 24384725 24384605 ID=Msa0015050-mRNA-1:exon:8350;Parent=Msa0015050-mRNA-1
chr1_1 exon 24387482 24387700 24387482 ID=Msa0015050-mRNA-1:exon:8349;Parent=Msa0015050-mRNA-1
chr1_1 exon 24387737 24387984 24387737 ID=Msa0015050-mRNA-1:exon:8348;Parent=Msa0015050-mRNA-1
chr1_1 CDS 24387737 24387984 24387737 ID=Msa0015050-mRNA-1:cds;Parent=Msa0015050-mRNA-1
chr1_1 CDS 24387482 24387700 24387482 ID=Msa0015050-mRNA-1:cds;Parent=Msa0015050-mRNA-1
chr1_1 CDS 24384605 24384725 24384605 ID=Msa0015050-mRNA-1:cds;Parent=Msa0015050-mRNA-1
chr1_1 CDS 24381693 24381854 24381693 ID=Msa0015050-mRNA-1:cds;Parent=Msa0015050-mRNA-1
chr1_1 CDS 24381131 24381304 24381131 ID=Msa0015050-mRNA-1:cds;Parent=Msa0015050-mRNA-1
chr1_1 three_prime_UTR 24380872 24381130 24380872 ID=Msa0015050-mRNA-1:three_prime_utr;Parent=Msa0015050-mRNA-1
Gene Sequence

>Msa0015050

ATGGCGACGACGGATCCGACGCCGTTAATCGGAAATTCATCGGACGAATCCAACTCCGGACGGAGAATTCTCCGTGCGCCGAGTCTCCGGCAAGCGGCGCGGTTTCTACGACAAGCAAGCGGGCGGAGGCTGATGCGTGAACCGTCGATGATGGTGAGGGAGACTGCGGCGGAGCAGTTGGAAGAACGGCAAAGCGATTGGGCGTATTCGAAGCCGGTGGTGATTCTTGATATTCTGTGGAATTTCGTTCGGAATGAATCGCCGAGCTCGCCGCTTAGGTTGTGGATTTTAGGGTATGCGTTGCAGTGTGTTCTTCATGTTGTGTGTGTTTGTTTTGAGTATAGGAGACGGGTGCGGATGCGGGGAGAGGTGAATGACAATGGTGGTAATGTGGTTGGAGGTGGTGGTAGTGGGGATTTGAGCTTTGATTCAATGGATAGTTCTGGACAGTATGTGAATTTGGCGCAGTTATGTATTGTCTTCTTGGGCTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTATTGCCGTTTGCTGTTGCCTTCCATGCATCATTGCGCTTCTGTATGCAGAAGGAGCAACAAAAGAAGATATTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTAATGAGAAGCTTGCTGATAATACACAAGGACCTGTTGGAGGAATAATGATTGAATGTCAAGCTGATTCCCCAATTGAACACGTGCTTGCCGATGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCCTATGATGACGGGGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGCACATCAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAGCCATGGTCAAGAGGAAGTGTAG
Protein sequence

>Msa0015050

MATTDPTPLIGNSSDESNSGRRILRAPSLRQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNFVRNESPSSPLRLWILGYALQCVLHVVCVCFEYRRRVRMRGEVNDNGGNVVGGGGSGDLSFDSMDSSGQYVNLAQLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAEGATKEDIEQLSKFKFQRKSNEKLADNTQGPVGGIMIECQADSPIEHVLADEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLHINATCPLCKYNILKSSSHGQEEV*