AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808090 MtrunA17_Chr5g0423001 83.059 608 36 3 108 714 1 542 0.0 986
Msa0808090 MtrunA17_Chr3g0101951 34.864 588 301 17 25 579 17 555 1.16e-93 305
Msa0808090 MtrunA17_Chr2g0290351 32.823 588 314 14 25 578 10 550 2.44e-88 291
Msa0808090 MtrunA17_Chr5g0423021 91.919 99 6 1 1 99 1 97 1.48e-54 182
Msa0808090 MtrunA17_Chr1g0192961 30.065 153 89 3 419 570 18 153 5.28e-14 74.7
Msa0808090 MtrunA17_Chr1g0192961 27.841 176 103 4 419 593 179 331 3.98e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808090 AT1G68580.2 41.985 655 311 14 7 647 1 600 5.28e-152 456
Msa0808090 AT1G68580.4 43.106 573 264 10 7 571 1 519 2.84e-142 427
Msa0808090 AT1G68580.5 43.116 552 259 11 106 647 48 554 1.83e-133 407
Msa0808090 AT1G68580.3 43.327 547 255 11 111 647 3 504 2.65e-133 405
Msa0808090 AT1G68580.1 44.946 465 208 7 111 571 3 423 1.38e-123 375
Msa0808090 AT5G55600.2 36.519 293 155 9 25 289 8 297 4.75e-43 166
Msa0808090 AT5G55600.2 36.318 201 120 4 415 608 378 577 6.06e-35 142
Msa0808090 AT5G55600.1 36.519 293 155 9 25 289 8 297 4.75e-43 166
Msa0808090 AT5G55600.1 36.318 201 120 4 415 608 378 577 6.06e-35 142
Msa0808090 AT5G55600.3 36.519 293 155 9 25 289 8 297 4.75e-43 166
Msa0808090 AT5G55600.3 36.318 201 120 4 415 608 378 577 6.06e-35 142
Msa0808090 AT4G17330.3 32.099 162 84 5 419 564 1539 1690 8.09e-16 82.8
Msa0808090 AT4G17330.2 32.099 162 84 5 419 564 1574 1725 8.26e-16 82.8
Msa0808090 AT4G17330.1 32.099 162 84 5 419 564 1574 1725 8.26e-16 82.8
Msa0808090 AT1G26540.1 31.973 147 77 5 424 564 14 143 1.80e-11 68.2
Msa0808090 AT1G11420.1 34.416 154 71 7 424 570 13 143 2.00e-11 67.8

Find 222 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATTGGCTTTGACTTTA+GGG 0.176708 5_3:-31821386 Msa0808090:three_prime_UTR
CCAACATTGGCTTTGACTTT+AGG 0.207548 5_3:-31821387 Msa0808090:three_prime_UTR
CAAATCAACTGTAGCATCTA+TGG 0.214796 5_3:-31822073 Msa0808090:CDS
TTGAAATTGAAATTCAATTA+TGG 0.216067 5_3:-31826517 Msa0808090:exon
AGAGAGGGAGGGGTTTGAAT+TGG 0.228301 5_3:+31826551 None:intergenic
ATTCACACCTTGTTGTATAA+TGG 0.245992 5_3:-31821034 Msa0808090:three_prime_UTR
CTTGTTACTGCTACTGGTTT+TGG 0.249736 5_3:+31824353 None:intergenic
TTCTTCCAGGGATGCGAATA+TGG 0.258934 5_3:-31825549 Msa0808090:CDS
TAACTCAAATGGAGGGTTAT+TGG 0.262495 5_3:-31824593 Msa0808090:CDS
GATTTATAGAGAGGGGTTCT+AGG 0.265515 5_3:+31826574 None:intergenic
GAATTGGATCTTGCTCTTAT+TGG 0.272650 5_3:-31826345 Msa0808090:CDS
GTACACCGTTGCTTCTTCTT+TGG 0.272996 5_3:+31824450 None:intergenic
GGTTTCGAGATCTGAGAATA+AGG 0.278971 5_3:+31826596 None:intergenic
TTCACACCTTGTTGTATAAT+GGG 0.291128 5_3:-31821033 Msa0808090:three_prime_UTR
AATACAATATAACACAAAAC+TGG 0.291548 5_3:+31821214 None:intergenic
GCCACTTCGATTCCTCTTCC+TGG 0.294327 5_3:+31821921 None:intergenic
CTCTGATAGTGGTCGGATCT+TGG 0.309438 5_3:+31822491 None:intergenic
ACCTGTGGTACCTGATGATC+TGG 0.312493 5_3:-31822535 Msa0808090:CDS
CAAACGTCTGGTTGCCTACT+TGG 0.316619 5_3:-31824895 Msa0808090:CDS
TACAACCATCTTGTTGCCTT+TGG 0.316887 5_3:+31824854 None:intergenic
TTTGCTGTCCTCAGATTTGC+AGG 0.317388 5_3:+31822092 None:intergenic
TCGAGCTTTGTTCCGGTACT+TGG 0.319281 5_3:+31824683 None:intergenic
GAGAGGGAGGGGTTTGAATT+GGG 0.321559 5_3:+31826552 None:intergenic
TCAAAAGAATTCACATGGTT+AGG 0.322137 5_3:-31825349 Msa0808090:CDS
TTGCTGCACACAAATGGTTC+TGG 0.335465 5_3:+31824651 None:intergenic
GAAGAAGAAAAGTGGTGAAT+TGG 0.337606 5_3:-31826361 Msa0808090:CDS
CTCTTTGATTGTGGCCAACT+TGG 0.341106 5_3:+31824299 None:intergenic
TCAAACTCTAGTGGTAGTTC+AGG 0.347687 5_3:-31824531 Msa0808090:CDS
CTCCAACTTGTTACTGCTAC+TGG 0.349762 5_3:+31824347 None:intergenic
CGCGTACACAAGTTGTTCAT+TGG 0.350880 5_3:-31826242 Msa0808090:CDS
GATGATGCCTGCATAAGTTT+TGG 0.351627 5_3:-31821436 Msa0808090:three_prime_UTR
GGCAGGACTGTTTAACTTAG+TGG 0.355651 5_3:-31821415 Msa0808090:three_prime_UTR
GGTGCAATATCACGACATTC+AGG 0.372888 5_3:-31822697 Msa0808090:CDS
GGTAAAACTTCTATTATCAT+TGG 0.381133 5_3:+31821317 None:intergenic
CAAAAGACTAGCACTAAGTT+AGG 0.385060 5_3:+31821540 None:intergenic
ACTTGAGGCATTCTCGAGAT+TGG 0.385275 5_3:-31822197 Msa0808090:CDS
TCTCAAGACAGTGGGATTAG+AGG 0.387259 5_3:-31822768 Msa0808090:CDS
CTGAGTATTGAATGCATAGA+TGG 0.388591 5_3:-31824738 Msa0808090:CDS
GTTGGAGGGTTCTGTAAAAC+TGG 0.389677 5_3:-31824331 Msa0808090:CDS
TATGGCTTTGAAAGAGAGAT+TGG 0.390667 5_3:-31826499 Msa0808090:CDS
CAAAAGAATTCACATGGTTA+GGG 0.399435 5_3:-31825348 Msa0808090:CDS
GAGCGTGTCGAGCTTTGTTC+CGG 0.399625 5_3:+31824676 None:intergenic
GGAAAAGATGCTGTTGAGTT+TGG 0.402963 5_3:-31824417 Msa0808090:CDS
TTCAATTTCAGAAGAGAGAG+AGG 0.403168 5_3:+31826535 None:intergenic
TTTGTGTGCAGCAAGAAGTT+TGG 0.403509 5_3:-31824642 Msa0808090:CDS
GAAAAGAAGAAACCACTATC+AGG 0.403767 5_3:-31825308 Msa0808090:CDS
AAAACATCCTTCACAAGATC+TGG 0.403992 5_3:+31821970 None:intergenic
ACTAAAACAAGATAACTAGA+AGG 0.407365 5_3:+31821513 None:intergenic
ATCTGATGATGGACCAGAAC+TGG 0.408102 5_3:-31824505 Msa0808090:CDS
AGGCATCATCCTTGCTTCCT+AGG 0.410713 5_3:+31821449 None:intergenic
AATGGAGGGTTATTGGAAAC+AGG 0.412358 5_3:-31824586 Msa0808090:CDS
GCAATTGGAAGATTAATATC+AGG 0.413121 5_3:-31824063 Msa0808090:CDS
AAATTCGTTTCGATGGATAA+AGG 0.413265 5_3:-31826408 Msa0808090:CDS
GGCATCATCCTTGCTTCCTA+GGG 0.416742 5_3:+31821450 None:intergenic
GCCCATGCATTGTGTAACTT+TGG 0.423958 5_3:-31821340 Msa0808090:three_prime_UTR
TTGAATTGGGATTTATAGAG+AGG 0.424740 5_3:+31826565 None:intergenic
TTGGTAAAGAGAAGAGTTCT+AGG 0.425787 5_3:-31826326 Msa0808090:CDS
TCTTCCGATATGCCTGATAG+TGG 0.428724 5_3:+31825296 None:intergenic
ATTGTATCAAGTCAGCATTA+TGG 0.429172 5_3:+31821168 None:intergenic
AACTTCTTGCTGCACACAAA+TGG 0.429204 5_3:+31824645 None:intergenic
TTCAGAAGAGAGAGAGGGAG+GGG 0.430658 5_3:+31826541 None:intergenic
GTCTTATCGCAGAAGAAGAA+TGG 0.435159 5_3:+31824472 None:intergenic
TTCATTTGTCTCTTTGATTG+TGG 0.435179 5_3:+31824290 None:intergenic
TTTGATTGTGGCCAACTTGG+TGG 0.435610 5_3:+31824302 None:intergenic
ATTTATAGAGAGGGGTTCTA+GGG 0.436632 5_3:+31826575 None:intergenic
AAATATCATGTTTATTTCCC+AGG 0.439067 5_3:-31822366 Msa0808090:intron
TGTGGTTCCAGCTTCATTGA+AGG 0.440047 5_3:-31821815 Msa0808090:CDS
CATGGTTATGAACATGAGAT+TGG 0.450391 5_3:-31825515 Msa0808090:CDS
TTGGTTACATTGTTGATGCC+TGG 0.452161 5_3:-31822440 Msa0808090:CDS
CACAGCCATATTCGCATCCC+TGG 0.454769 5_3:+31825544 None:intergenic
ATCAGGCATATCGGAAGAAC+GGG 0.458568 5_3:-31825291 Msa0808090:CDS
ATTCCACGTTTCTCTGATAG+TGG 0.459062 5_3:+31822480 None:intergenic
TTTCAGCAGTAGGGATATTG+AGG 0.463753 5_3:-31824107 Msa0808090:CDS
GCACGACAGAGGAACTGAAA+AGG 0.463786 5_3:+31821755 None:intergenic
AGCAGAGGAGAACAAACGTC+TGG 0.475317 5_3:-31824907 Msa0808090:CDS
GAAACCACTATCAGGCATAT+CGG 0.476219 5_3:-31825300 Msa0808090:CDS
TGATCAACCTTCAATGAAGC+TGG 0.476443 5_3:+31821808 None:intergenic
AGGCATTCTCGAGATTGGAC+AGG 0.478147 5_3:-31822192 Msa0808090:CDS
CAACGGTGTACAAAGGTTGT+TGG 0.479996 5_3:-31824438 Msa0808090:CDS
ACAAGATGGTTGTAGTTCGC+TGG 0.484731 5_3:-31824845 Msa0808090:CDS
ATATCAGGAAAAGACAAATC+AGG 0.489371 5_3:-31824048 Msa0808090:intron
TTACTCGGGTTCTTCTGAAA+AGG 0.491451 5_3:-31822019 Msa0808090:CDS
ATACTCAGACGTTGAAGATA+AGG 0.493320 5_3:+31824753 None:intergenic
GACAGGGAATGGATGGGTAA+AGG 0.496000 5_3:-31822175 Msa0808090:CDS
CACGACAGAGGAACTGAAAA+GGG 0.496669 5_3:+31821756 None:intergenic
GCAATACAAGTCACAACATC+AGG 0.497975 5_3:+31822141 None:intergenic
TGGTTAGATTCTATTGTTCA+AGG 0.498161 5_3:-31826222 Msa0808090:intron
TCTCGAGATTGGACAGGGAA+TGG 0.498663 5_3:-31822186 Msa0808090:CDS
GGCCAAAGTTACACAATGCA+TGG 0.499526 5_3:+31821338 None:intergenic
GAGATTGGACAGGGAATGGA+TGG 0.504271 5_3:-31822182 Msa0808090:CDS
TGGGAGATGGAATACAATCT+AGG 0.504917 5_3:-31822053 Msa0808090:CDS
ACTCGGAGACCCAGATCATC+AGG 0.505580 5_3:+31822525 None:intergenic
CTCTCTTTCACTAAAACTGT+GGG 0.505684 5_3:+31824788 None:intergenic
CGAGAATGCCTCAAGTTACA+TGG 0.511581 5_3:+31822204 None:intergenic
TTTCACAGAATTGATGAGGT+TGG 0.514249 5_3:-31824822 Msa0808090:CDS
CTTAGTGGAATAACCAACAT+TGG 0.520340 5_3:-31821400 Msa0808090:three_prime_UTR
GAATGGATGGGTAAAGGTGA+GGG 0.525927 5_3:-31822169 Msa0808090:CDS
AGTTAAGGTGGAAGTCATCC+AGG 0.525937 5_3:-31821939 Msa0808090:CDS
AATACTGTGTTTCTGCTAAG+TGG 0.527557 5_3:+31821638 None:intergenic
CACGTTTCTCTGATAGTGGT+CGG 0.528328 5_3:+31822484 None:intergenic
GGAAGAGAAATTCGTTTCGA+TGG 0.530586 5_3:-31826415 Msa0808090:CDS
GCAGTAGGGATATTGAGGTC+TGG 0.531529 5_3:-31824102 Msa0808090:CDS
CACAGCACTACGCCAAGTAC+CGG 0.531875 5_3:-31824695 Msa0808090:CDS
CCTCTCTTTCACTAAAACTG+TGG 0.537595 5_3:+31824787 None:intergenic
CTTCAACTTCAAATAAAATG+AGG 0.538796 5_3:+31821473 None:intergenic
AACTAGGACGATTCCACCAT+GGG 0.539841 5_3:+31821075 None:intergenic
GTTTCGAGATCTGAGAATAA+GGG 0.539870 5_3:+31826597 None:intergenic
TGGCATGATGGATGGTGGGA+AGG 0.540826 5_3:-31822417 Msa0808090:CDS
ATGCCTGGTGGCATGATGGA+TGG 0.541595 5_3:-31822425 Msa0808090:CDS
GAGGGTTCTGTAAAACTGGT+TGG 0.543107 5_3:-31824327 Msa0808090:CDS
AGTCCTGCCAAAACTTATGC+AGG 0.544229 5_3:+31821429 None:intergenic
ACATGAGATTGGAACATTGA+AGG 0.544761 5_3:-31825504 Msa0808090:intron
CCACCATCCATCATGCCACC+AGG 0.546255 5_3:+31822422 None:intergenic
ACTGTAGCATCTATGGGAGA+TGG 0.548639 5_3:-31822066 Msa0808090:CDS
CCCAGATCATCAGGTACCAC+AGG 0.548955 5_3:+31822534 None:intergenic
TTATTTGAAGTTGAAGCCCT+AGG 0.549089 5_3:-31821466 Msa0808090:three_prime_UTR
CGGTACTTGGCGTAGTGCTG+TGG 0.549279 5_3:+31824696 None:intergenic
AAGAAAACAAGGCACAAGAA+AGG 0.549533 5_3:+31821296 None:intergenic
AGATGGAATACAATCTAGGC+AGG 0.549756 5_3:-31822049 Msa0808090:CDS
CTGGTTTCACAGAATTGATG+AGG 0.549883 5_3:-31824826 Msa0808090:CDS
TGAATTGGGATTTATAGAGA+GGG 0.551070 5_3:+31826566 None:intergenic
ACGTGTGATAAAATAACAAA+GGG 0.552194 5_3:+31821251 None:intergenic
TAGGCAGGCTGATACTTACT+CGG 0.552436 5_3:-31822034 Msa0808090:CDS
TTTCAGAAGAGAGAGAGGGA+GGG 0.555127 5_3:+31826540 None:intergenic
CAAACTCTAGTGGTAGTTCA+GGG 0.555530 5_3:-31824530 Msa0808090:CDS
ATACTGTGTTTCTGCTAAGT+GGG 0.556829 5_3:+31821639 None:intergenic
CTTGTTCAAAAGAATTCACA+TGG 0.560554 5_3:-31825354 Msa0808090:CDS
GTTTGGTAAGGATGATGTCA+AGG 0.560830 5_3:-31824625 Msa0808090:CDS
ATACAATATAACACAAAACT+GGG 0.561653 5_3:+31821215 None:intergenic
GGCATTCTCGAGATTGGACA+GGG 0.564326 5_3:-31822191 Msa0808090:CDS
CCTGGTGGCATGATGGATGG+TGG 0.564674 5_3:-31822422 Msa0808090:CDS
GCCAAAGTTACACAATGCAT+GGG 0.565270 5_3:+31821339 None:intergenic
ATTGGCTTTGACTTTAGGGA+TGG 0.568643 5_3:-31821382 Msa0808090:three_prime_UTR
GGTGGAAGTCATCCAGGAAG+AGG 0.569070 5_3:-31821933 Msa0808090:CDS
AACCAGTAGCAGTAACAAGT+TGG 0.570662 5_3:-31824349 Msa0808090:CDS
TTTCTGCAGTCTGATGCTAC+TGG 0.570969 5_3:-31821844 Msa0808090:CDS
GATGGGTAAAGGTGAGGGAA+AGG 0.570981 5_3:-31822164 Msa0808090:CDS
CCTAAAGTCAAAGCCAATGT+TGG 0.571783 5_3:+31821387 None:intergenic
CTGGTGGCATGATGGATGGT+GGG 0.572784 5_3:-31822421 Msa0808090:CDS
GGAATGGATGGGTAAAGGTG+AGG 0.573465 5_3:-31822170 Msa0808090:CDS
GCATCAGACTGCAGAAACTT+CGG 0.573906 5_3:+31821850 None:intergenic
TTGAGAGAGGACCTCAACAT+TGG 0.574826 5_3:+31822785 None:intergenic
AACAGAGCAATGACATACAT+AGG 0.575434 5_3:-31821882 Msa0808090:CDS
AAATCAACTGTAGCATCTAT+GGG 0.576521 5_3:-31822072 Msa0808090:CDS
ATTTCAGAAGAGAGAGAGGG+AGG 0.579702 5_3:+31826539 None:intergenic
TATCAGGCATATCGGAAGAA+CGG 0.579846 5_3:-31825292 Msa0808090:CDS
GTTGATGCCTGGTGGCATGA+TGG 0.579936 5_3:-31822429 Msa0808090:CDS
TCACATGGTTAGGGTTACCC+TGG 0.580451 5_3:-31825339 Msa0808090:CDS
ACAGTGGGATTAGAGGATGT+TGG 0.582052 5_3:-31822761 Msa0808090:CDS
CAGGGATGCGAATATGGCTG+TGG 0.582432 5_3:-31825543 Msa0808090:CDS
TCATGATGACTATAAATACC+AGG 0.583831 5_3:-31821788 Msa0808090:CDS
AAAATGAGGCTCCGATGCCA+CGG 0.583979 5_3:+31821487 None:intergenic
CAGTAGCAGTAACAAGTTGG+AGG 0.584099 5_3:-31824346 Msa0808090:CDS
CTAAAACAAGATAACTAGAA+GGG 0.585095 5_3:+31821514 None:intergenic
TCACACCTTGTTGTATAATG+GGG 0.586117 5_3:-31821032 Msa0808090:three_prime_UTR
CCTGTGGTACCTGATGATCT+GGG 0.587162 5_3:-31822534 Msa0808090:CDS
GAAACGTGGAATATCATTCG+TGG 0.587500 5_3:-31822469 Msa0808090:CDS
TTAGAGCTTCTGTTATCAAG+AGG 0.589868 5_3:-31822737 Msa0808090:CDS
ATATCATTCGTGGGTGATGT+TGG 0.590093 5_3:-31822459 Msa0808090:CDS
AACGTGTGATAAAATAACAA+AGG 0.590633 5_3:+31821250 None:intergenic
TTTGATATAACTCAAATGGA+GGG 0.591359 5_3:-31824600 Msa0808090:CDS
TCTTGGTCCTCTCATCTACT+CGG 0.592590 5_3:+31822508 None:intergenic
TCAATTTCAGAAGAGAGAGA+GGG 0.594745 5_3:+31826536 None:intergenic
TAGGGTTACCCTGGACATGT+AGG 0.595952 5_3:-31825330 Msa0808090:CDS
AGGTCCTCTCTCAAGACAGT+GGG 0.596580 5_3:-31822776 Msa0808090:CDS
AGTTCAGGGAAATCTGATGA+TGG 0.598540 5_3:-31824516 Msa0808090:CDS
CTCGTACATGTCTTCCAAGT+AGG 0.600078 5_3:+31824881 None:intergenic
AGTTGAAGCCCTAGGAAGCA+AGG 0.600625 5_3:-31821458 Msa0808090:three_prime_UTR
CACTAGAGTTTGACTCCACG+TGG 0.600930 5_3:+31824541 None:intergenic
GACATGTACGAGGGTTCCAA+AGG 0.601793 5_3:-31824870 Msa0808090:CDS
CGTGCCGTCTTTAACCAACA+TGG 0.603213 5_3:-31821737 Msa0808090:CDS
ACTGGTTGGAACCACCAAGT+TGG 0.604816 5_3:-31824313 Msa0808090:CDS
ATGTGCAGATGACTCCATGT+TGG 0.610024 5_3:-31821712 Msa0808090:exon
GAATTGGGATTTATAGAGAG+GGG 0.611405 5_3:+31826567 None:intergenic
TATTTGCACCATGTAACTTG+AGG 0.611537 5_3:-31822212 Msa0808090:CDS
ACAAAGTTCCTGCAAATCTG+AGG 0.617490 5_3:-31822100 Msa0808090:CDS
AGGCAGGCTGATACTTACTC+GGG 0.619512 5_3:-31822033 Msa0808090:CDS
ACAGAGGAACTGAAAAGGGA+AGG 0.626929 5_3:+31821760 None:intergenic
AAACGTGGAATATCATTCGT+GGG 0.627151 5_3:-31822468 Msa0808090:CDS
TGAAAAGGGAAGGATCTCCC+TGG 0.627762 5_3:+31821770 None:intergenic
CACACCTTGTTGTATAATGG+GGG 0.628716 5_3:-31821031 Msa0808090:three_prime_UTR
ATAACCATGTTGGTTAAAGA+CGG 0.629339 5_3:+31821733 None:intergenic
GGGTTCCAAAGGCAACAAGA+TGG 0.630417 5_3:-31824859 Msa0808090:CDS
ATGCATGGGCTTGCAAACAA+TGG 0.630453 5_3:+31821353 None:intergenic
TCGAGATCTGAGAATAAGGG+AGG 0.631655 5_3:+31826600 None:intergenic
GAAGAAGCAACGGTGTACAA+AGG 0.632099 5_3:-31824445 Msa0808090:CDS
GTTACATTGTTGATGCCTGG+TGG 0.632805 5_3:-31822437 Msa0808090:CDS
GTGCAGCAAGAAGTTTGGTA+AGG 0.632888 5_3:-31824637 Msa0808090:CDS
TGGCGTAGTGCTGTGGACTG+AGG 0.634382 5_3:+31824703 None:intergenic
GAGGTCCTCTCTCAAGACAG+TGG 0.634450 5_3:-31822777 Msa0808090:CDS
GGTTAAAGACGGCACGACAG+AGG 0.639671 5_3:+31821744 None:intergenic
ACAAGAACAATATTCTCCCA+TGG 0.641691 5_3:-31821091 Msa0808090:three_prime_UTR
TCATCTGCACATAACCATGT+TGG 0.644595 5_3:+31821723 None:intergenic
CACGTGGAGTCAAACTCTAG+TGG 0.647874 5_3:-31824540 Msa0808090:CDS
TAATCCCACTGTCTTGAGAG+AGG 0.651285 5_3:+31822772 None:intergenic
CTAGAGTTTGACTCCACGTG+GGG 0.651840 5_3:+31824543 None:intergenic
CATGATGACTATAAATACCA+GGG 0.653722 5_3:-31821787 Msa0808090:CDS
AAACTAGGACGATTCCACCA+TGG 0.656220 5_3:+31821074 None:intergenic
TGGGTCTCCGAGTAGATGAG+AGG 0.656912 5_3:-31822515 Msa0808090:CDS
TAAGACCAAAGAAGAAGCAA+CGG 0.657790 5_3:-31824455 Msa0808090:CDS
TCACGACATTCAGGATGCAG+AGG 0.660192 5_3:-31822688 Msa0808090:CDS
AAAGACATTTCAAGAAAACA+AGG 0.661133 5_3:+31821285 None:intergenic
AGTAGCAGTAACAAGTTGGA+GGG 0.665623 5_3:-31824345 Msa0808090:CDS
GATGGATAAAGGTAGAAGAG+AGG 0.667192 5_3:-31826397 Msa0808090:CDS
CTACTTGGAAGACATGTACG+AGG 0.672183 5_3:-31824880 Msa0808090:CDS
CTGTGTTTCTGCTAAGTGGG+AGG 0.673072 5_3:+31821642 None:intergenic
GGATAAACTTAGAAAGACTG+AGG 0.673810 5_3:-31821998 Msa0808090:CDS
GGAAGTTCCAGATCTTGTGA+AGG 0.675883 5_3:-31821977 Msa0808090:CDS
GAGGCACAAAGACAAAGTGA+AGG 0.676396 5_3:-31822718 Msa0808090:CDS
GGATGAAGCTAAGAAGCTCG+AGG 0.677654 5_3:-31822667 Msa0808090:intron
TACAATATAACACAAAACTG+GGG 0.683323 5_3:+31821216 None:intergenic
AGAACAATATTCTCCCATGG+TGG 0.690140 5_3:-31821088 Msa0808090:three_prime_UTR
TTATCGCAGAAGAAGAATGG+AGG 0.692820 5_3:+31824475 None:intergenic
AATATGGCTGTGGAGAAACA+TGG 0.696716 5_3:-31825533 Msa0808090:CDS
TCCAGGAAGAGGAATCGAAG+TGG 0.703286 5_3:-31821922 Msa0808090:CDS
ACTAGAGTTTGACTCCACGT+GGG 0.704632 5_3:+31824542 None:intergenic
CGACCACTATCAGAGAAACG+TGG 0.706299 5_3:-31822483 Msa0808090:CDS
TACTTGGAAGACATGTACGA+GGG 0.709651 5_3:-31824879 Msa0808090:CDS
GTAGTGCTGTGGACTGAGGA+CGG 0.713773 5_3:+31824707 None:intergenic
AGATTGGACAGGGAATGGAT+GGG 0.719923 5_3:-31822181 Msa0808090:CDS
TCTCTTTCACTAAAACTGTG+GGG 0.748073 5_3:+31824789 None:intergenic
GAAGCAAATGTATCCCCACG+TGG 0.785568 5_3:-31824556 Msa0808090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAATAAATTTTTATA+TGG + chr5_3:31821800-31821819 None:intergenic 0.0%
!! TAAGATTATTAATTAAGAAA+AGG + chr5_3:31821505-31821524 None:intergenic 10.0%
!! AATTGGTAAAAAAAAAAAAA+GGG + chr5_3:31822343-31822362 None:intergenic 10.0%
!!! TTTATATTTTTCATTAGTAT+TGG - chr5_3:31824944-31824963 Msa0808090:intron 10.0%
!!! TTTTTTATTAATTTTCTTGA+AGG - chr5_3:31824995-31825014 Msa0808090:intron 10.0%
!! TTGAAATTGAAATTCAATTA+TGG - chr5_3:31821055-31821074 Msa0808090:three_prime_UTR 15.0%
!! TAATTCGTTAATTGTTAATT+CGG - chr5_3:31821589-31821608 Msa0808090:three_prime_UTR 15.0%
!! TTAAAAAACATACAAGAAAT+CGG + chr5_3:31821908-31821927 None:intergenic 15.0%
!! GAATTGGTAAAAAAAAAAAA+AGG + chr5_3:31822344-31822363 None:intergenic 15.0%
!!! ATGTGTAAAATCTTTTATAT+TGG + chr5_3:31822377-31822396 None:intergenic 15.0%
!!! TTTTTAGAAAAAATTCTCTT+CGG + chr5_3:31823892-31823911 None:intergenic 15.0%
!!! AGAGAATTTTTTCTAAAAAA+AGG - chr5_3:31823893-31823912 Msa0808090:intron 15.0%
!!! ATTTTTTTTTTTTGAAAGCA+TGG + chr5_3:31823942-31823961 None:intergenic 15.0%
!! TCAAAAATTAAAACTTCATA+TGG + chr5_3:31824566-31824585 None:intergenic 15.0%
!!! TATGAAGTTTTAATTTTTGA+AGG - chr5_3:31824566-31824585 Msa0808090:CDS 15.0%
!! CAAATTTATAAAAACAAACT+AGG + chr5_3:31826516-31826535 None:intergenic 15.0%
!! AATTAAGAAAAGGATGAAAA+AGG + chr5_3:31821495-31821514 None:intergenic 20.0%
!! GAAAAATGAATCTCAAATTA+AGG + chr5_3:31821556-31821575 None:intergenic 20.0%
!! AATTCGTTAATTGTTAATTC+GGG - chr5_3:31821590-31821609 Msa0808090:three_prime_UTR 20.0%
!!! TGTATTTAGTGTTTATTTTG+TGG - chr5_3:31821648-31821667 Msa0808090:three_prime_UTR 20.0%
!!! TTGTTTATTAGTGTTTTCAT+TGG - chr5_3:31821823-31821842 Msa0808090:CDS 20.0%
!! AAAATCAAGATAATTCAATG+AGG + chr5_3:31822169-31822188 None:intergenic 20.0%
!!! TTGAATTATCTTGATTTTTC+AGG - chr5_3:31822171-31822190 Msa0808090:CDS 20.0%
!! NNNTGACAAGTAATTAAACA+TGG - chr5_3:31823416-31823435 Msa0808090:intron 20.0%
!! NNTGACAAGTAATTAAACAT+GGG - chr5_3:31823417-31823436 Msa0808090:intron 20.0%
!!! AACATATAGTATTTGAAACA+GGG + chr5_3:31823739-31823758 None:intergenic 20.0%
!!! TAATGAGGAAGATAATTTTT+GGG + chr5_3:31823852-31823871 None:intergenic 20.0%
!!! TTTTAGAAAAAATTCTCTTC+GGG + chr5_3:31823891-31823910 None:intergenic 20.0%
!! AAACTTCATATGGAAAAAAA+TGG + chr5_3:31824556-31824575 None:intergenic 20.0%
!! GCTATGAATTAGATAAAAAA+AGG - chr5_3:31824601-31824620 Msa0808090:CDS 20.0%
!!! TATTAATTTTCTTGAAGGAA+TGG - chr5_3:31825000-31825019 Msa0808090:intron 20.0%
!! ATACAATATAACACAAAACT+GGG + chr5_3:31826360-31826379 None:intergenic 20.0%
!! AATACAATATAACACAAAAC+TGG + chr5_3:31826361-31826380 None:intergenic 20.0%
!!! TATTTTCTGAAGAAGAAAAG+TGG - chr5_3:31821203-31821222 Msa0808090:three_prime_UTR 25.0%
!! TGCTTTCTTTTACCTAATTT+TGG - chr5_3:31821391-31821410 Msa0808090:three_prime_UTR 25.0%
! TTATCGAAAGAACCAAAATT+AGG + chr5_3:31821406-31821425 None:intergenic 25.0%
!! TTCTTTCGATAAAACTGTTT+TGG - chr5_3:31821414-31821433 Msa0808090:three_prime_UTR 25.0%
! GTTAATTCGAATCTTAATTC+TGG - chr5_3:31821446-31821465 Msa0808090:three_prime_UTR 25.0%
!! TATTAGTGTTTTCATTGGAT+AGG - chr5_3:31821828-31821847 Msa0808090:CDS 25.0%
! TTAATATGAGAAGAGATTCA+AGG + chr5_3:31821880-31821899 None:intergenic 25.0%
!!! TTACTTTTTCAGTTGTTTTC+TGG - chr5_3:31821931-31821950 Msa0808090:CDS 25.0%
!! ATGTGAATTCTTTTGAACAA+GGG + chr5_3:31822219-31822238 None:intergenic 25.0%
! AACTAACTAACAATTGTGAT+TGG + chr5_3:31822405-31822424 None:intergenic 25.0%
! ACAATTGTTAGTTAGTTGTA+TGG - chr5_3:31822408-31822427 Msa0808090:CDS 25.0%
! TTATTGTTGGTCGATTATAA+CGG + chr5_3:31822481-31822500 None:intergenic 25.0%
!!! GCAAAGATTGTTTTTATTGT+TGG + chr5_3:31822494-31822513 None:intergenic 25.0%
!!! ATCTCTGTTTTTTGTTTCTT+TGG - chr5_3:31822536-31822555 Msa0808090:CDS 25.0%
!!! GGATTTTGATATAACTCAAA+TGG - chr5_3:31822968-31822987 Msa0808090:intron 25.0%
!! TTTTGATATAACTCAAATGG+AGG - chr5_3:31822971-31822990 Msa0808090:intron 25.0%
! TTTGATATAACTCAAATGGA+GGG - chr5_3:31822972-31822991 Msa0808090:intron 25.0%
! NTGACAAGTAATTAAACATG+GGG - chr5_3:31823418-31823437 Msa0808090:intron 25.0%
!!! ATATTTTTTCTCACAGCAAT+TGG - chr5_3:31823494-31823513 Msa0808090:intron 25.0%
!! ACATATAGTATTTGAAACAG+GGG + chr5_3:31823738-31823757 None:intergenic 25.0%
!! GAACATATAGTATTTGAAAC+AGG + chr5_3:31823740-31823759 None:intergenic 25.0%
! GTTTCAAATACTATATGTTC+TGG - chr5_3:31823740-31823759 Msa0808090:intron 25.0%
!! GTAATGAGGAAGATAATTTT+TGG + chr5_3:31823853-31823872 None:intergenic 25.0%
! TTTAGAAAAAATTCTCTTCG+GGG + chr5_3:31823890-31823909 None:intergenic 25.0%
!! ACATTTGTATCCCTTTTTAT+TGG - chr5_3:31823980-31823999 Msa0808090:intron 25.0%
!!! AAAACACATTTTTCAGCTTT+AGG - chr5_3:31824017-31824036 Msa0808090:intron 25.0%
!! AAATATTTTTCGTTCCAAGT+TGG + chr5_3:31824045-31824064 None:intergenic 25.0%
! AACTTGGAACGAAAAATATT+TGG - chr5_3:31824044-31824063 Msa0808090:intron 25.0%
! ACTTGGAACGAAAAATATTT+GGG - chr5_3:31824045-31824064 Msa0808090:intron 25.0%
! AAAGACAACCAAAAACTTTA+AGG - chr5_3:31824081-31824100 Msa0808090:CDS 25.0%
! AAGACAACCAAAAACTTTAA+GGG - chr5_3:31824082-31824101 Msa0808090:CDS 25.0%
! GAATTATCACATTAGTTACT+AGG - chr5_3:31824348-31824367 Msa0808090:CDS 25.0%
! AGAAATTAGAAGTTGAACAA+AGG + chr5_3:31824478-31824497 None:intergenic 25.0%
!! ATTTATTGATGATCATACAC+GGG + chr5_3:31824525-31824544 None:intergenic 25.0%
!! CATTTATTGATGATCATACA+CGG + chr5_3:31824526-31824545 None:intergenic 25.0%
! AAATATCATGTTTATTTCCC+AGG - chr5_3:31825206-31825225 Msa0808090:intron 25.0%
!! ATGTTTTATCATTGCAGTTA+AGG - chr5_3:31825618-31825637 Msa0808090:intron 25.0%
!!! TTGGTTTTTTCTTTCTAGAA+TGG - chr5_3:31825879-31825898 Msa0808090:intron 25.0%
! CTAAAACAAGATAACTAGAA+GGG + chr5_3:31826061-31826080 None:intergenic 25.0%
! ACTAAAACAAGATAACTAGA+AGG + chr5_3:31826062-31826081 None:intergenic 25.0%
! CTTCAACTTCAAATAAAATG+AGG + chr5_3:31826102-31826121 None:intergenic 25.0%
! GGTAAAACTTCTATTATCAT+TGG + chr5_3:31826258-31826277 None:intergenic 25.0%
! AAAGACATTTCAAGAAAACA+AGG + chr5_3:31826290-31826309 None:intergenic 25.0%
! ACGTGTGATAAAATAACAAA+GGG + chr5_3:31826324-31826343 None:intergenic 25.0%
! AACGTGTGATAAAATAACAA+AGG + chr5_3:31826325-31826344 None:intergenic 25.0%
! TACAATATAACACAAAACTG+GGG + chr5_3:31826359-31826378 None:intergenic 25.0%
TGAATTGGGATTTATAGAGA+GGG + chr5_3:31821009-31821028 None:intergenic 30.0%
TTGAATTGGGATTTATAGAG+AGG + chr5_3:31821010-31821029 None:intergenic 30.0%
AAAAAAGAAGATACGTTACG+TGG - chr5_3:31821135-31821154 Msa0808090:three_prime_UTR 30.0%
AAAAAGAAGATACGTTACGT+GGG - chr5_3:31821136-31821155 Msa0808090:three_prime_UTR 30.0%
AAATTCGTTTCGATGGATAA+AGG - chr5_3:31821164-31821183 Msa0808090:three_prime_UTR 30.0%
CGCGATTTAAGTCTAAAAAA+AGG + chr5_3:31821314-31821333 None:intergenic 30.0%
TGGTTAGATTCTATTGTTCA+AGG - chr5_3:31821350-31821369 Msa0808090:three_prime_UTR 30.0%
!!! TGGTTTTGTATCACTGATTT+TGG - chr5_3:31821708-31821727 Msa0808090:exon 30.0%
!!! GTATCACTGATTTTGGTTTA+TGG - chr5_3:31821715-31821734 Msa0808090:exon 30.0%
GAAGAATCTGAAAATTTCAG+AGG + chr5_3:31822006-31822025 None:intergenic 30.0%
! AATTTTCAGATTCTTCTTCC+AGG - chr5_3:31822010-31822029 Msa0808090:CDS 30.0%
! ATTTTCAGATTCTTCTTCCA+GGG - chr5_3:31822011-31822030 Msa0808090:CDS 30.0%
! CATGTGAATTCTTTTGAACA+AGG + chr5_3:31822220-31822239 None:intergenic 30.0%
CTTGTTCAAAAGAATTCACA+TGG - chr5_3:31822218-31822237 Msa0808090:CDS 30.0%
TCAAAAGAATTCACATGGTT+AGG - chr5_3:31822223-31822242 Msa0808090:CDS 30.0%
CAAAAGAATTCACATGGTTA+GGG - chr5_3:31822224-31822243 Msa0808090:CDS 30.0%
TATTGGAAATGCATCAGAAT+TGG + chr5_3:31822360-31822379 None:intergenic 30.0%
!!! TTTTGTGTTTGTTTTAGCAG+AGG - chr5_3:31822650-31822669 Msa0808090:intron 30.0%
TTCATTTGTCTCTTTGATTG+TGG + chr5_3:31823285-31823304 None:intergenic 30.0%
GCAATTGGAAGATTAATATC+AGG - chr5_3:31823509-31823528 Msa0808090:intron 30.0%
ATATCAGGAAAAGACAAATC+AGG - chr5_3:31823524-31823543 Msa0808090:intron 30.0%
AGACAAATCAGGTAAATCAT+TGG - chr5_3:31823535-31823554 Msa0808090:intron 30.0%
! CTTTCTAGTAGAAGTTCAAT+CGG + chr5_3:31823627-31823646 None:intergenic 30.0%
AACTTCTACTAGAAAGACAA+GGG - chr5_3:31823631-31823650 Msa0808090:intron 30.0%
CGGAAAAAATTTCACAAAGA+TGG + chr5_3:31823665-31823684 None:intergenic 30.0%
! CTGAACTTAAAGAGTATGTT+CGG + chr5_3:31823685-31823704 None:intergenic 30.0%
! CATATAGTATTTGAAACAGG+GGG + chr5_3:31823737-31823756 None:intergenic 30.0%
! AATTCAAGATCAGGTTTTCT+AGG - chr5_3:31823764-31823783 Msa0808090:intron 30.0%
GTTCTATTATCTTAGCATCT+AGG - chr5_3:31823786-31823805 Msa0808090:intron 30.0%
! GTTACAATATCATCTAGAAC+AGG - chr5_3:31823818-31823837 Msa0808090:intron 30.0%
GGCTATGATTCCAATAAAAA+GGG + chr5_3:31823993-31824012 None:intergenic 30.0%
TGGCTATGATTCCAATAAAA+AGG + chr5_3:31823994-31824013 None:intergenic 30.0%
! GCTGAAAAATGTGTTTTTCT+TGG + chr5_3:31824014-31824033 None:intergenic 30.0%
AGACAACCAAAAACTTTAAG+GGG - chr5_3:31824083-31824102 Msa0808090:CDS 30.0%
! AATCTTCCCCTTAAAGTTTT+TGG + chr5_3:31824092-31824111 None:intergenic 30.0%
ATTTGTAATAATGCGAGAAG+TGG - chr5_3:31824109-31824128 Msa0808090:CDS 30.0%
TTTGTAATAATGCGAGAAGT+GGG - chr5_3:31824110-31824129 Msa0808090:CDS 30.0%
AATGTACCTAAGTATCTTTG+GGG + chr5_3:31824230-31824249 None:intergenic 30.0%
GAATGTACCTAAGTATCTTT+GGG + chr5_3:31824231-31824250 None:intergenic 30.0%
TGAATGTACCTAAGTATCTT+TGG + chr5_3:31824232-31824251 None:intergenic 30.0%
!! TAATAGCTCTAGTAACTTCT+AGG - chr5_3:31824261-31824280 Msa0808090:intron 30.0%
AATCAACTTAATACCACGAT+TGG + chr5_3:31824428-31824447 None:intergenic 30.0%
! CTTCTAATTTCTTTTCCATG+AGG - chr5_3:31824486-31824505 Msa0808090:CDS 30.0%
TCTAATTCATAGCGATGTTT+GGG + chr5_3:31824594-31824613 None:intergenic 30.0%
ATCTAATTCATAGCGATGTT+TGG + chr5_3:31824595-31824614 None:intergenic 30.0%
!! GTGTGTCTTTTAATTCAAGA+GGG + chr5_3:31824642-31824661 None:intergenic 30.0%
GTACAGAATATAAGAACAGA+AGG + chr5_3:31825237-31825256 None:intergenic 30.0%
ACAGAGCATACACAAAATTA+TGG + chr5_3:31825259-31825278 None:intergenic 30.0%
ATAAGACGCGTAATATTACA+AGG + chr5_3:31825297-31825316 None:intergenic 30.0%
AAATCAACTGTAGCATCTAT+GGG - chr5_3:31825500-31825519 Msa0808090:intron 30.0%
! TTTTATCATTGCAGTTAAGG+TGG - chr5_3:31825621-31825640 Msa0808090:intron 30.0%
TCATGATGACTATAAATACC+AGG - chr5_3:31825784-31825803 Msa0808090:intron 30.0%
CATGATGACTATAAATACCA+GGG - chr5_3:31825785-31825804 Msa0808090:intron 30.0%
! ATAACCATGTTGGTTAAAGA+CGG + chr5_3:31825842-31825861 None:intergenic 30.0%
CTAGAAAGAAAAAACCAACA+TGG + chr5_3:31825877-31825896 None:intergenic 30.0%
!!! TAGAATGGTGTCTACTTTTT+AGG - chr5_3:31825894-31825913 Msa0808090:intron 30.0%
AAGAAACCATGAGAAAAAAG+GGG + chr5_3:31825999-31826018 None:intergenic 30.0%
GAAGAAACCATGAGAAAAAA+GGG + chr5_3:31826000-31826019 None:intergenic 30.0%
TGAAGAAACCATGAGAAAAA+AGG + chr5_3:31826001-31826020 None:intergenic 30.0%
!!! TATCTTGTTTTAGTATTCCG+TGG - chr5_3:31826068-31826087 Msa0808090:intron 30.0%
ATTGTATCAAGTCAGCATTA+TGG + chr5_3:31826407-31826426 None:intergenic 30.0%
! ATTCACACCTTGTTGTATAA+TGG - chr5_3:31826538-31826557 Msa0808090:five_prime_UTR 30.0%
! TTCACACCTTGTTGTATAAT+GGG - chr5_3:31826539-31826558 Msa0808090:five_prime_UTR 30.0%
GTTTCGAGATCTGAGAATAA+GGG + chr5_3:31820978-31820997 None:intergenic 35.0%
ATTTATAGAGAGGGGTTCTA+GGG + chr5_3:31821000-31821019 None:intergenic 35.0%
GAATTGGGATTTATAGAGAG+GGG + chr5_3:31821008-31821027 None:intergenic 35.0%
TCAATTTCAGAAGAGAGAGA+GGG + chr5_3:31821039-31821058 None:intergenic 35.0%
TTCAATTTCAGAAGAGAGAG+AGG + chr5_3:31821040-31821059 None:intergenic 35.0%
!! TATGGCTTTGAAAGAGAGAT+TGG - chr5_3:31821073-31821092 Msa0808090:three_prime_UTR 35.0%
GAAGAAGAAAAGTGGTGAAT+TGG - chr5_3:31821211-31821230 Msa0808090:three_prime_UTR 35.0%
GAATTGGATCTTGCTCTTAT+TGG - chr5_3:31821227-31821246 Msa0808090:three_prime_UTR 35.0%
TTGGTAAAGAGAAGAGTTCT+AGG - chr5_3:31821246-31821265 Msa0808090:three_prime_UTR 35.0%
TGAAAATTTCAGAGGCAAAC+AGG + chr5_3:31821998-31822017 None:intergenic 35.0%
CATGGTTATGAACATGAGAT+TGG - chr5_3:31822057-31822076 Msa0808090:CDS 35.0%
ACATGAGATTGGAACATTGA+AGG - chr5_3:31822068-31822087 Msa0808090:CDS 35.0%
GAAAAGAAGAAACCACTATC+AGG - chr5_3:31822264-31822283 Msa0808090:intron 35.0%
!! GCTTTCGCAAATTGATTTTC+AGG - chr5_3:31822620-31822639 Msa0808090:intron 35.0%
TTTCACAGAATTGATGAGGT+TGG - chr5_3:31822750-31822769 Msa0808090:CDS 35.0%
TCTCTTTCACTAAAACTGTG+GGG + chr5_3:31822786-31822805 None:intergenic 35.0%
CTCTCTTTCACTAAAACTGT+GGG + chr5_3:31822787-31822806 None:intergenic 35.0%
ATACTCAGACGTTGAAGATA+AGG + chr5_3:31822822-31822841 None:intergenic 35.0%
!! CTGAGTATTGAATGCATAGA+TGG - chr5_3:31822834-31822853 Msa0808090:intron 35.0%
TAACTCAAATGGAGGGTTAT+TGG - chr5_3:31822979-31822998 Msa0808090:intron 35.0%
TAAGACCAAAGAAGAAGCAA+CGG - chr5_3:31823117-31823136 Msa0808090:intron 35.0%
! CACATTTTCTTTCAGCAGTA+GGG - chr5_3:31823456-31823475 Msa0808090:intron 35.0%
GAACTTCTACTAGAAAGACA+AGG - chr5_3:31823630-31823649 Msa0808090:intron 35.0%
ACTTCTACTAGAAAGACAAG+GGG - chr5_3:31823632-31823651 Msa0808090:intron 35.0%
! CGAACATACTCTTTAAGTTC+AGG - chr5_3:31823683-31823702 Msa0808090:intron 35.0%
! AAGGTTGATCTTCAACAAAG+TGG - chr5_3:31823912-31823931 Msa0808090:intron 35.0%
!! TTATTTTGTAACACCTGCAC+AGG - chr5_3:31824137-31824156 Msa0808090:intron 35.0%
GAGTCTCGTATTATAACACA+CGG - chr5_3:31824159-31824178 Msa0808090:intron 35.0%
AGTCTCGTATTATAACACAC+GGG - chr5_3:31824160-31824179 Msa0808090:intron 35.0%
GAATTACCCCAAAGATACTT+AGG - chr5_3:31824221-31824240 Msa0808090:intron 35.0%
! TCAGCAATACCATTTTGTTG+TGG - chr5_3:31824302-31824321 Msa0808090:CDS 35.0%
CTAATTCATAGCGATGTTTG+GGG + chr5_3:31824593-31824612 None:intergenic 35.0%
!! CGTGTGTCTTTTAATTCAAG+AGG + chr5_3:31824643-31824662 None:intergenic 35.0%
TTAGAGCTTCTGTTATCAAG+AGG - chr5_3:31824835-31824854 Msa0808090:CDS 35.0%
AAACGTGGAATATCATTCGT+GGG - chr5_3:31825104-31825123 Msa0808090:intron 35.0%
TCTTGAAGTTAATGCTTTGC+AGG - chr5_3:31825320-31825339 Msa0808090:CDS 35.0%
CTTGAAGTTAATGCTTTGCA+GGG - chr5_3:31825321-31825340 Msa0808090:CDS 35.0%
TTGAAGTTAATGCTTTGCAG+GGG - chr5_3:31825322-31825341 Msa0808090:CDS 35.0%
TATTTGCACCATGTAACTTG+AGG - chr5_3:31825360-31825379 Msa0808090:CDS 35.0%
CAAATCAACTGTAGCATCTA+TGG - chr5_3:31825499-31825518 Msa0808090:intron 35.0%
GGATAAACTTAGAAAGACTG+AGG - chr5_3:31825574-31825593 Msa0808090:intron 35.0%
AAAACATCCTTCACAAGATC+TGG + chr5_3:31825605-31825624 None:intergenic 35.0%
AACAGAGCAATGACATACAT+AGG - chr5_3:31825690-31825709 Msa0808090:intron 35.0%
! ATACTGTGTTTCTGCTAAGT+GGG + chr5_3:31825936-31825955 None:intergenic 35.0%
! AATACTGTGTTTCTGCTAAG+TGG + chr5_3:31825937-31825956 None:intergenic 35.0%
CAAAAGACTAGCACTAAGTT+AGG + chr5_3:31826035-31826054 None:intergenic 35.0%
! TTATTTGAAGTTGAAGCCCT+AGG - chr5_3:31826106-31826125 Msa0808090:intron 35.0%
CTTAGTGGAATAACCAACAT+TGG - chr5_3:31826172-31826191 Msa0808090:intron 35.0%
!! CAACATTGGCTTTGACTTTA+GGG - chr5_3:31826186-31826205 Msa0808090:intron 35.0%
AAGAAAACAAGGCACAAGAA+AGG + chr5_3:31826279-31826298 None:intergenic 35.0%
ACAAGAACAATATTCTCCCA+TGG - chr5_3:31826481-31826500 Msa0808090:CDS 35.0%
! TCACACCTTGTTGTATAATG+GGG - chr5_3:31826540-31826559 Msa0808090:five_prime_UTR 35.0%
GGTTTCGAGATCTGAGAATA+AGG + chr5_3:31820979-31820998 None:intergenic 40.0%
GATTTATAGAGAGGGGTTCT+AGG + chr5_3:31821001-31821020 None:intergenic 40.0%
GGAAGAGAAATTCGTTTCGA+TGG - chr5_3:31821157-31821176 Msa0808090:three_prime_UTR 40.0%
GATGGATAAAGGTAGAAGAG+AGG - chr5_3:31821175-31821194 Msa0808090:three_prime_UTR 40.0%
AATATGGCTGTGGAGAAACA+TGG - chr5_3:31822039-31822058 Msa0808090:CDS 40.0%
! CTTCTTTTCCTACATGTCCA+GGG + chr5_3:31822253-31822272 None:intergenic 40.0%
! TCTTCTTTTCCTACATGTCC+AGG + chr5_3:31822254-31822273 None:intergenic 40.0%
GAAACCACTATCAGGCATAT+CGG - chr5_3:31822272-31822291 Msa0808090:intron 40.0%
TATCAGGCATATCGGAAGAA+CGG - chr5_3:31822280-31822299 Msa0808090:intron 40.0%
TGTTGGTCGATTATAACGGT+TGG + chr5_3:31822477-31822496 None:intergenic 40.0%
AATCAATTTGCGAAAGCAGC+AGG + chr5_3:31822617-31822636 None:intergenic 40.0%
TACTTGGAAGACATGTACGA+GGG - chr5_3:31822693-31822712 Msa0808090:CDS 40.0%
TACAACCATCTTGTTGCCTT+TGG + chr5_3:31822721-31822740 None:intergenic 40.0%
CTGGTTTCACAGAATTGATG+AGG - chr5_3:31822746-31822765 Msa0808090:CDS 40.0%
CCTCTCTTTCACTAAAACTG+TGG + chr5_3:31822788-31822807 None:intergenic 40.0%
!! CCACAGTTTTAGTGAAAGAG+AGG - chr5_3:31822785-31822804 Msa0808090:CDS 40.0%
AACTTCTTGCTGCACACAAA+TGG + chr5_3:31822930-31822949 None:intergenic 40.0%
TTTGTGTGCAGCAAGAAGTT+TGG - chr5_3:31822930-31822949 Msa0808090:intron 40.0%
GTTTGGTAAGGATGATGTCA+AGG - chr5_3:31822947-31822966 Msa0808090:intron 40.0%
AATGGAGGGTTATTGGAAAC+AGG - chr5_3:31822986-31823005 Msa0808090:intron 40.0%
TCAAACTCTAGTGGTAGTTC+AGG - chr5_3:31823041-31823060 Msa0808090:intron 40.0%
CAAACTCTAGTGGTAGTTCA+GGG - chr5_3:31823042-31823061 Msa0808090:intron 40.0%
AGTTCAGGGAAATCTGATGA+TGG - chr5_3:31823056-31823075 Msa0808090:intron 40.0%
TTATCGCAGAAGAAGAATGG+AGG + chr5_3:31823100-31823119 None:intergenic 40.0%
GTCTTATCGCAGAAGAAGAA+TGG + chr5_3:31823103-31823122 None:intergenic 40.0%
GGAAAAGATGCTGTTGAGTT+TGG - chr5_3:31823155-31823174 Msa0808090:intron 40.0%
!!! CTTGTTACTGCTACTGGTTT+TGG + chr5_3:31823222-31823241 None:intergenic 40.0%
AACCAGTAGCAGTAACAAGT+TGG - chr5_3:31823223-31823242 Msa0808090:intron 40.0%
! AGTAGCAGTAACAAGTTGGA+GGG - chr5_3:31823227-31823246 Msa0808090:intron 40.0%
! GCACATTTTCTTTCAGCAGT+AGG - chr5_3:31823455-31823474 Msa0808090:intron 40.0%
TTTCAGCAGTAGGGATATTG+AGG - chr5_3:31823465-31823484 Msa0808090:intron 40.0%
TGAGTGAGAAGAATTACCAG+AGG - chr5_3:31823559-31823578 Msa0808090:intron 40.0%
AGAAGAATTACCAGAGGAAC+TGG - chr5_3:31823565-31823584 Msa0808090:intron 40.0%
!! CTGGAAGATGGATTATCAGT+AGG - chr5_3:31823584-31823603 Msa0808090:intron 40.0%
TTATCAGTAGGACCTTCACT+TGG - chr5_3:31823596-31823615 Msa0808090:intron 40.0%
CTTCTACTAGAAAGACAAGG+GGG - chr5_3:31823633-31823652 Msa0808090:intron 40.0%
TGTTCTGGCAATTCAAGATC+AGG - chr5_3:31823755-31823774 Msa0808090:intron 40.0%
!! TTCAGCTTTAGGATCCAACT+TGG - chr5_3:31824028-31824047 Msa0808090:intron 40.0%
CGTGATACTCCACAACAAAA+TGG + chr5_3:31824314-31824333 None:intergenic 40.0%
ATACCACGATTGGCATTCTA+AGG + chr5_3:31824418-31824437 None:intergenic 40.0%
!!! GATTTTAGCTTCTAGACCTG+TGG - chr5_3:31825022-31825041 Msa0808090:intron 40.0%
ATTCCACGTTTCTCTGATAG+TGG + chr5_3:31825095-31825114 None:intergenic 40.0%
GAAACGTGGAATATCATTCG+TGG - chr5_3:31825103-31825122 Msa0808090:intron 40.0%
ATATCATTCGTGGGTGATGT+TGG - chr5_3:31825113-31825132 Msa0808090:intron 40.0%
TTGGTTACATTGTTGATGCC+TGG - chr5_3:31825132-31825151 Msa0808090:intron 40.0%
AAGAACAGAAGGTCATACCT+GGG + chr5_3:31825226-31825245 None:intergenic 40.0%
TAAGAACAGAAGGTCATACC+TGG + chr5_3:31825227-31825246 None:intergenic 40.0%
GCAATACAAGTCACAACATC+AGG + chr5_3:31825434-31825453 None:intergenic 40.0%
ACAAAGTTCCTGCAAATCTG+AGG - chr5_3:31825472-31825491 Msa0808090:intron 40.0%
TGGGAGATGGAATACAATCT+AGG - chr5_3:31825519-31825538 Msa0808090:CDS 40.0%
AGATGGAATACAATCTAGGC+AGG - chr5_3:31825523-31825542 Msa0808090:CDS 40.0%
! TTACTCGGGTTCTTCTGAAA+AGG - chr5_3:31825553-31825572 Msa0808090:CDS 40.0%
!! TGATGCTACTGGTAGTTTTG+TGG - chr5_3:31825739-31825758 Msa0808090:intron 40.0%
TGATCAACCTTCAATGAAGC+TGG + chr5_3:31825767-31825786 None:intergenic 40.0%
TCATCTGCACATAACCATGT+TGG + chr5_3:31825852-31825871 None:intergenic 40.0%
!! GAGAAAAAAGGGGCATTGAA+TGG + chr5_3:31825989-31826008 None:intergenic 40.0%
!!! TCAATGCCCCTTTTTTCTCA+TGG - chr5_3:31825990-31826009 Msa0808090:intron 40.0%
!! GTTTTAGTATTCCGTGGCAT+CGG - chr5_3:31826074-31826093 Msa0808090:intron 40.0%
! GATGATGCCTGCATAAGTTT+TGG - chr5_3:31826136-31826155 Msa0808090:intron 40.0%
CCTAAAGTCAAAGCCAATGT+TGG + chr5_3:31826188-31826207 None:intergenic 40.0%
!! CCAACATTGGCTTTGACTTT+AGG - chr5_3:31826185-31826204 Msa0808090:intron 40.0%
!! ATTGGCTTTGACTTTAGGGA+TGG - chr5_3:31826190-31826209 Msa0808090:intron 40.0%
GCCAAAGTTACACAATGCAT+GGG + chr5_3:31826236-31826255 None:intergenic 40.0%
AGAACAATATTCTCCCATGG+TGG - chr5_3:31826484-31826503 Msa0808090:CDS 40.0%
! CACACCTTGTTGTATAATGG+GGG - chr5_3:31826541-31826560 Msa0808090:five_prime_UTR 40.0%
TCGAGATCTGAGAATAAGGG+AGG + chr5_3:31820975-31820994 None:intergenic 45.0%
TTTCAGAAGAGAGAGAGGGA+GGG + chr5_3:31821035-31821054 None:intergenic 45.0%
ATTTCAGAAGAGAGAGAGGG+AGG + chr5_3:31821036-31821055 None:intergenic 45.0%
CGCGTACACAAGTTGTTCAT+TGG - chr5_3:31821330-31821349 Msa0808090:three_prime_UTR 45.0%
! TTTTCTAGATCTCTCGCGTG+TGG - chr5_3:31821679-31821698 Msa0808090:three_prime_UTR 45.0%
TTTCTAGATCTCTCGCGTGT+GGG - chr5_3:31821680-31821699 Msa0808090:three_prime_UTR 45.0%
TTCTTCCAGGGATGCGAATA+TGG - chr5_3:31822023-31822042 Msa0808090:CDS 45.0%
TCTTCCGATATGCCTGATAG+TGG + chr5_3:31822279-31822298 None:intergenic 45.0%
ATCAGGCATATCGGAAGAAC+GGG - chr5_3:31822281-31822300 Msa0808090:intron 45.0%
CTCGTACATGTCTTCCAAGT+AGG + chr5_3:31822694-31822713 None:intergenic 45.0%
CTACTTGGAAGACATGTACG+AGG - chr5_3:31822692-31822711 Msa0808090:CDS 45.0%
ACAAGATGGTTGTAGTTCGC+TGG - chr5_3:31822727-31822746 Msa0808090:CDS 45.0%
TTGCTGCACACAAATGGTTC+TGG + chr5_3:31822924-31822943 None:intergenic 45.0%
GTGCAGCAAGAAGTTTGGTA+AGG - chr5_3:31822935-31822954 Msa0808090:intron 45.0%
ACTAGAGTTTGACTCCACGT+GGG + chr5_3:31823033-31823052 None:intergenic 45.0%
!! ATCTGATGATGGACCAGAAC+TGG - chr5_3:31823067-31823086 Msa0808090:intron 45.0%
! TGGAGGTTTTCTTCCAGTTC+TGG + chr5_3:31823083-31823102 None:intergenic 45.0%
GTACACCGTTGCTTCTTCTT+TGG + chr5_3:31823125-31823144 None:intergenic 45.0%
GAAGAAGCAACGGTGTACAA+AGG - chr5_3:31823127-31823146 Msa0808090:intron 45.0%
CAACGGTGTACAAAGGTTGT+TGG - chr5_3:31823134-31823153 Msa0808090:intron 45.0%
!! CTCCAACTTGTTACTGCTAC+TGG + chr5_3:31823228-31823247 None:intergenic 45.0%
! CAGTAGCAGTAACAAGTTGG+AGG - chr5_3:31823226-31823245 Msa0808090:intron 45.0%
GTTGGAGGGTTCTGTAAAAC+TGG - chr5_3:31823241-31823260 Msa0808090:intron 45.0%
GAGGGTTCTGTAAAACTGGT+TGG - chr5_3:31823245-31823264 Msa0808090:intron 45.0%
TTTGATTGTGGCCAACTTGG+TGG + chr5_3:31823273-31823292 None:intergenic 45.0%
CTCTTTGATTGTGGCCAACT+TGG + chr5_3:31823276-31823295 None:intergenic 45.0%
TTACCAGAGGAACTGGAAGA+TGG - chr5_3:31823572-31823591 Msa0808090:intron 45.0%
AATCCATCTTCCAGTTCCTC+TGG + chr5_3:31823578-31823597 None:intergenic 45.0%
CAATCGGATTCTCCAAGTGA+AGG + chr5_3:31823611-31823630 None:intergenic 45.0%
! TTTGAAACAGGGGGAGAAGA+GGG + chr5_3:31823728-31823747 None:intergenic 45.0%
! ATTTGAAACAGGGGGAGAAG+AGG + chr5_3:31823729-31823748 None:intergenic 45.0%
CGAGAGTCAGAGTAGTAATG+AGG + chr5_3:31823867-31823886 None:intergenic 45.0%
ATAATACGAGACTCCTGTGC+AGG + chr5_3:31824153-31824172 None:intergenic 45.0%
GGGATGACATTCGATTGATG+AGG - chr5_3:31824180-31824199 Msa0808090:intron 45.0%
! TTGTGGAGTATCACGACAAG+TGG - chr5_3:31824319-31824338 Msa0808090:CDS 45.0%
!! GGCATTCTAAGGTCTGACAA+TGG + chr5_3:31824407-31824426 None:intergenic 45.0%
AGACCTTAGAATGCCAATCG+TGG - chr5_3:31824412-31824431 Msa0808090:CDS 45.0%
TGATCATACACGGGTGTGTT+GGG + chr5_3:31824516-31824535 None:intergenic 45.0%
ATGATCATACACGGGTGTGT+TGG + chr5_3:31824517-31824536 None:intergenic 45.0%
AGCTGTAGGTTCCAATGTTG+AGG - chr5_3:31824776-31824795 Msa0808090:CDS 45.0%
TTGAGAGAGGACCTCAACAT+TGG + chr5_3:31824790-31824809 None:intergenic 45.0%
TAATCCCACTGTCTTGAGAG+AGG + chr5_3:31824803-31824822 None:intergenic 45.0%
TCTCAAGACAGTGGGATTAG+AGG - chr5_3:31824804-31824823 Msa0808090:CDS 45.0%
ACAGTGGGATTAGAGGATGT+TGG - chr5_3:31824811-31824830 Msa0808090:CDS 45.0%
GAGGCACAAAGACAAAGTGA+AGG - chr5_3:31824854-31824873 Msa0808090:CDS 45.0%
GGTGCAATATCACGACATTC+AGG - chr5_3:31824875-31824894 Msa0808090:CDS 45.0%
TCTTGGTCCTCTCATCTACT+CGG + chr5_3:31825067-31825086 None:intergenic 45.0%
!! CACGTTTCTCTGATAGTGGT+CGG + chr5_3:31825091-31825110 None:intergenic 45.0%
GTTACATTGTTGATGCCTGG+TGG - chr5_3:31825135-31825154 Msa0808090:intron 45.0%
CGAGAATGCCTCAAGTTACA+TGG + chr5_3:31825371-31825390 None:intergenic 45.0%
! ACTTGAGGCATTCTCGAGAT+TGG - chr5_3:31825375-31825394 Msa0808090:CDS 45.0%
AGATTGGACAGGGAATGGAT+GGG - chr5_3:31825391-31825410 Msa0808090:intron 45.0%
GAATGGATGGGTAAAGGTGA+GGG - chr5_3:31825403-31825422 Msa0808090:intron 45.0%
! TTTGCTGTCCTCAGATTTGC+AGG + chr5_3:31825483-31825502 None:intergenic 45.0%
ACTGTAGCATCTATGGGAGA+TGG - chr5_3:31825506-31825525 Msa0808090:CDS 45.0%
TAGGCAGGCTGATACTTACT+CGG - chr5_3:31825538-31825557 Msa0808090:CDS 45.0%
GGAAGTTCCAGATCTTGTGA+AGG - chr5_3:31825595-31825614 Msa0808090:intron 45.0%
AGTTAAGGTGGAAGTCATCC+AGG - chr5_3:31825633-31825652 Msa0808090:intron 45.0%
GCATCAGACTGCAGAAACTT+CGG + chr5_3:31825725-31825744 None:intergenic 45.0%
TTTCTGCAGTCTGATGCTAC+TGG - chr5_3:31825728-31825747 Msa0808090:intron 45.0%
TGTGGTTCCAGCTTCATTGA+AGG - chr5_3:31825757-31825776 Msa0808090:intron 45.0%
ACAGAGGAACTGAAAAGGGA+AGG + chr5_3:31825815-31825834 None:intergenic 45.0%
CACGACAGAGGAACTGAAAA+GGG + chr5_3:31825819-31825838 None:intergenic 45.0%
ATGTGCAGATGACTCCATGT+TGG - chr5_3:31825860-31825879 Msa0808090:intron 45.0%
!! ATGCCTGCATAAGTTTTGGC+AGG - chr5_3:31826140-31826159 Msa0808090:intron 45.0%
AGTCCTGCCAAAACTTATGC+AGG + chr5_3:31826146-31826165 None:intergenic 45.0%
! GGCAGGACTGTTTAACTTAG+TGG - chr5_3:31826157-31826176 Msa0808090:intron 45.0%
ATGCATGGGCTTGCAAACAA+TGG + chr5_3:31826222-31826241 None:intergenic 45.0%
GCCCATGCATTGTGTAACTT+TGG - chr5_3:31826232-31826251 Msa0808090:CDS 45.0%
GGCCAAAGTTACACAATGCA+TGG + chr5_3:31826237-31826256 None:intergenic 45.0%
AACTAGGACGATTCCACCAT+GGG + chr5_3:31826500-31826519 None:intergenic 45.0%
AAACTAGGACGATTCCACCA+TGG + chr5_3:31826501-31826520 None:intergenic 45.0%
! ACCTTGTTGTATAATGGGGG+TGG - chr5_3:31826544-31826563 Msa0808090:five_prime_UTR 45.0%
TCCACCCCCATTATACAACA+AGG + chr5_3:31826548-31826567 None:intergenic 45.0%
GAGAGGGAGGGGTTTGAATT+GGG + chr5_3:31821023-31821042 None:intergenic 50.0%
AGAGAGGGAGGGGTTTGAAT+TGG + chr5_3:31821024-31821043 None:intergenic 50.0%
TTCAGAAGAGAGAGAGGGAG+GGG + chr5_3:31821034-31821053 None:intergenic 50.0%
TTCTAGATCTCTCGCGTGTG+GGG - chr5_3:31821681-31821700 Msa0808090:three_prime_UTR 50.0%
TCACATGGTTAGGGTTACCC+TGG - chr5_3:31822233-31822252 Msa0808090:CDS 50.0%
TAGGGTTACCCTGGACATGT+AGG - chr5_3:31822242-31822261 Msa0808090:intron 50.0%
AGCAGAGGAGAACAAACGTC+TGG - chr5_3:31822665-31822684 Msa0808090:intron 50.0%
CAAACGTCTGGTTGCCTACT+TGG - chr5_3:31822677-31822696 Msa0808090:CDS 50.0%
GACATGTACGAGGGTTCCAA+AGG - chr5_3:31822702-31822721 Msa0808090:CDS 50.0%
GGGTTCCAAAGGCAACAAGA+TGG - chr5_3:31822713-31822732 Msa0808090:CDS 50.0%
!! TCGAGCTTTGTTCCGGTACT+TGG + chr5_3:31822892-31822911 None:intergenic 50.0%
GAAGCAAATGTATCCCCACG+TGG - chr5_3:31823016-31823035 Msa0808090:intron 50.0%
CTAGAGTTTGACTCCACGTG+GGG + chr5_3:31823032-31823051 None:intergenic 50.0%
CACTAGAGTTTGACTCCACG+TGG + chr5_3:31823034-31823053 None:intergenic 50.0%
CACGTGGAGTCAAACTCTAG+TGG - chr5_3:31823032-31823051 Msa0808090:intron 50.0%
ACTGGTTGGAACCACCAAGT+TGG - chr5_3:31823259-31823278 Msa0808090:intron 50.0%
GCAGTAGGGATATTGAGGTC+TGG - chr5_3:31823470-31823489 Msa0808090:intron 50.0%
GGTGTGTTGGGTTTACCTCA+TGG + chr5_3:31824504-31824523 None:intergenic 50.0%
AGGTCCTCTCTCAAGACAGT+GGG - chr5_3:31824796-31824815 Msa0808090:CDS 50.0%
TCACGACATTCAGGATGCAG+AGG - chr5_3:31824884-31824903 Msa0808090:CDS 50.0%
GGATGAAGCTAAGAAGCTCG+AGG - chr5_3:31824905-31824924 Msa0808090:CDS 50.0%
ACCTGTGGTACCTGATGATC+TGG - chr5_3:31825037-31825056 Msa0808090:intron 50.0%
CCTGTGGTACCTGATGATCT+GGG - chr5_3:31825038-31825057 Msa0808090:intron 50.0%
!! CTCTGATAGTGGTCGGATCT+TGG + chr5_3:31825084-31825103 None:intergenic 50.0%
CGACCACTATCAGAGAAACG+TGG - chr5_3:31825089-31825108 Msa0808090:intron 50.0%
AGGCATTCTCGAGATTGGAC+AGG - chr5_3:31825380-31825399 Msa0808090:CDS 50.0%
GGCATTCTCGAGATTGGACA+GGG - chr5_3:31825381-31825400 Msa0808090:CDS 50.0%
TCTCGAGATTGGACAGGGAA+TGG - chr5_3:31825386-31825405 Msa0808090:intron 50.0%
GAGATTGGACAGGGAATGGA+TGG - chr5_3:31825390-31825409 Msa0808090:intron 50.0%
GACAGGGAATGGATGGGTAA+AGG - chr5_3:31825397-31825416 Msa0808090:intron 50.0%
GGAATGGATGGGTAAAGGTG+AGG - chr5_3:31825402-31825421 Msa0808090:intron 50.0%
GATGGGTAAAGGTGAGGGAA+AGG - chr5_3:31825408-31825427 Msa0808090:intron 50.0%
AGGCAGGCTGATACTTACTC+GGG - chr5_3:31825539-31825558 Msa0808090:CDS 50.0%
TCCAGGAAGAGGAATCGAAG+TGG - chr5_3:31825650-31825669 Msa0808090:intron 50.0%
TGAAAAGGGAAGGATCTCCC+TGG + chr5_3:31825805-31825824 None:intergenic 50.0%
GCACGACAGAGGAACTGAAA+AGG + chr5_3:31825820-31825839 None:intergenic 50.0%
CGTGCCGTCTTTAACCAACA+TGG - chr5_3:31825835-31825854 Msa0808090:intron 50.0%
! CTGTGTTTCTGCTAAGTGGG+AGG + chr5_3:31825933-31825952 None:intergenic 50.0%
AAAATGAGGCTCCGATGCCA+CGG + chr5_3:31826088-31826107 None:intergenic 50.0%
AGTTGAAGCCCTAGGAAGCA+AGG - chr5_3:31826114-31826133 Msa0808090:intron 50.0%
GGCATCATCCTTGCTTCCTA+GGG + chr5_3:31826125-31826144 None:intergenic 50.0%
AGGCATCATCCTTGCTTCCT+AGG + chr5_3:31826126-31826145 None:intergenic 50.0%
! TCTCTCGCGTGTGGGGTTTT+TGG - chr5_3:31821688-31821707 Msa0808090:three_prime_UTR 55.0%
CACAGCCATATTCGCATCCC+TGG + chr5_3:31822031-31822050 None:intergenic 55.0%
CAGGGATGCGAATATGGCTG+TGG - chr5_3:31822029-31822048 Msa0808090:CDS 55.0%
! GTAGTGCTGTGGACTGAGGA+CGG + chr5_3:31822868-31822887 None:intergenic 55.0%
CACAGCACTACGCCAAGTAC+CGG - chr5_3:31822877-31822896 Msa0808090:intron 55.0%
!! GAGCGTGTCGAGCTTTGTTC+CGG + chr5_3:31822899-31822918 None:intergenic 55.0%
GAGGTCCTCTCTCAAGACAG+TGG - chr5_3:31824795-31824814 Msa0808090:CDS 55.0%
CCCAGATCATCAGGTACCAC+AGG + chr5_3:31825041-31825060 None:intergenic 55.0%
ACTCGGAGACCCAGATCATC+AGG + chr5_3:31825050-31825069 None:intergenic 55.0%
TGGGTCTCCGAGTAGATGAG+AGG - chr5_3:31825057-31825076 Msa0808090:intron 55.0%
GTTGATGCCTGGTGGCATGA+TGG - chr5_3:31825143-31825162 Msa0808090:intron 55.0%
! ATGCCTGGTGGCATGATGGA+TGG - chr5_3:31825147-31825166 Msa0808090:intron 55.0%
!! CTGGTGGCATGATGGATGGT+GGG - chr5_3:31825151-31825170 Msa0808090:intron 55.0%
!! TGGCATGATGGATGGTGGGA+AGG - chr5_3:31825155-31825174 Msa0808090:intron 55.0%
GGTGGAAGTCATCCAGGAAG+AGG - chr5_3:31825639-31825658 Msa0808090:intron 55.0%
GCCACTTCGATTCCTCTTCC+TGG + chr5_3:31825654-31825673 None:intergenic 55.0%
GGTTAAAGACGGCACGACAG+AGG + chr5_3:31825831-31825850 None:intergenic 55.0%
! TGGCGTAGTGCTGTGGACTG+AGG + chr5_3:31822872-31822891 None:intergenic 60.0%
CGGTACTTGGCGTAGTGCTG+TGG + chr5_3:31822879-31822898 None:intergenic 60.0%
CCACCATCCATCATGCCACC+AGG + chr5_3:31825153-31825172 None:intergenic 60.0%
!! CCTGGTGGCATGATGGATGG+TGG - chr5_3:31825150-31825169 Msa0808090:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31820964 31826630 31820964 ID=Msa0808090;Name=Msa0808090
chr5_3 mRNA 31820964 31826630 31820964 ID=Msa0808090-mRNA-1;Parent=Msa0808090;Name=Msa0808090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=110|0.71|0.62|0.87|1|1|8|759|714
chr5_3 exon 31820964 31822252 31820964 ID=Msa0808090-mRNA-1:exon:10524;Parent=Msa0808090-mRNA-1
chr5_3 exon 31822367 31822577 31822367 ID=Msa0808090-mRNA-1:exon:10523;Parent=Msa0808090-mRNA-1
chr5_3 exon 31822668 31822810 31822668 ID=Msa0808090-mRNA-1:exon:10522;Parent=Msa0808090-mRNA-1
chr5_3 exon 31824049 31824146 31824049 ID=Msa0808090-mRNA-1:exon:10521;Parent=Msa0808090-mRNA-1
chr5_3 exon 31824282 31824952 31824282 ID=Msa0808090-mRNA-1:exon:10520;Parent=Msa0808090-mRNA-1
chr5_3 exon 31825279 31825401 31825279 ID=Msa0808090-mRNA-1:exon:10519;Parent=Msa0808090-mRNA-1
chr5_3 exon 31825505 31825575 31825505 ID=Msa0808090-mRNA-1:exon:10518;Parent=Msa0808090-mRNA-1
chr5_3 exon 31826223 31826630 31826223 ID=Msa0808090-mRNA-1:exon:10517;Parent=Msa0808090-mRNA-1
chr5_3 five_prime_UTR 31826521 31826630 31826521 ID=Msa0808090-mRNA-1:five_prime_utr;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31826223 31826520 31826223 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31825505 31825575 31825505 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31825279 31825401 31825279 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31824282 31824952 31824282 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31824049 31824146 31824049 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31822668 31822810 31822668 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31822367 31822577 31822367 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 CDS 31821723 31822252 31821723 ID=Msa0808090-mRNA-1:cds;Parent=Msa0808090-mRNA-1
chr5_3 three_prime_UTR 31820964 31821722 31820964 ID=Msa0808090-mRNA-1:three_prime_utr;Parent=Msa0808090-mRNA-1
Gene Sequence

>Msa0808090

ATGGCTTTGAAAGAGAGATTGGCTTCATCTTCTGAAACGACGTCGTCACAAGATGAAAATGAAAAAAGAAGATACGTTACGTGGGAAGAGAAATTCGTTTCGATGGATAAAGGTAGAAGAGAGGTTCGTTATTTTCTGAAGAAGAAAAGTGGTGAATTGGATCTTGCTCTTATTGGTAAAGAGAAGAGTTCTAGGCATATGAGTTATCATTATGCGATTAGAAACTCTTCTTTTGCTCCTTTTTTTAGACTTAAATCGCGTACACAAGTTGTTCATTGGTTAGATTCTATTGTTCAAGATTCTTCTTCCAGGGATGCGAATATGGCTGTGGAGAAACATGGTTATGAACATGAGATTGGAACATTGAAGGAGAATCAATTGCAAACGCTGCACCCTTGTTCAAAAGAATTCACATGGTTAGGGTTACCCTGGACATGTAGGAAAAGAAGAAACCACTATCAGGCATATCGGAAGAACGGGTTTCAGATATCTGTGTATGATTTTGTGTTTGTTTTAGCAGAGGAGAACAAACGTCTGGTTGCCTACTTGGAAGACATGTACGAGGGTTCCAAAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTTTTGTTTTGCCCCACAGTTTTAGTGAAAGAGAGGTTTACTTTTCTCCTTATCTTCAACGTCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCACAGCACTACGCCAAGTACCGGAACAAAGCTCGACACGCTCGTCCAGAACCATTTGTGTGCAGCAAGAAGTTTGGTAAGGATGATGTCAAGGATTTTGATATAACTCAAATGGAGGGTTATTGGAAACAGGAAATACTGAAGCAAATGTATCCCCACGTGGAGTCAAACTCTAGTGGTAGTTCAGGGAAATCTGATGATGGACCAGAACTGGAAGAAAACCTCCATTCTTCTTCTGCGATAAGACCAAAGAAGAAGCAACGGTGTACAAAGGTTGTTGGAAAAGATGCTGTTGAGTTTGGTTCTCTTCAATTAGAAAAATTGAGTAATTGTAAGATTGATGCCAAAACCAGTAGCAGTAACAAGTTGGAGGGTTCTGTAAAACTGGTTGGAACCACCAAGTTGGCCACAATCAAAGAGACAAATGAAGCTTCACATGTACGTGCACATTTTCTTTCAGCAGTAGGGATATTGAGGTCTGGAATATTTTTTCTCACAGCAATTGGAAGATTAATATCAGGAAAAGACAAATCAGGTTCCAATGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGTTGGTTTAGAGCTTCTGTTATCAAGAGGCACAAAGACAAAGTGAAGGTGCAATATCACGACATTCAGGATGCAGAGGATGAAGCTAAGAAGCTCGAGGAATGGATTTTAGCTTCTAGACCTGTGGTACCTGATGATCTGGGTCTCCGAGTAGATGAGAGGACCAAGATCCGACCACTATCAGAGAAACGTGGAATATCATTCGTGGGTGATGTTGGTTACATTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAATCTGATGATAAATATCATGTTTATTTCCCAGGGGAAAAGAAGATGTCAATATTTGCACCATGTAACTTGAGGCATTCTCGAGATTGGACAGGGAATGGATGGGTAAAGGTGAGGGAAAGGCCTGATGTTGTGACTTGTATTGCATCAAGCTTGAAAACAAAACAAAGTTCCTGCAAATCTGAGGACAGCAAATCAACTGTAGCATCTATGGGAGATGGAATACAATCTAGGCAGGCTGATACTTACTCGGGTTCTTCTGAAAAGGATAAACTTAGAAAGACTGAGGAAGTTCCAGATCTTGTGAAGGATGTTTTATCATTGCAGTTAAGGTGGAAGTCATCCAGGAAGAGGAATCGAAGTGGCACTTCTCAGCAGAAACAACAGAGCAATGACATACATAGGAAATTGTCGCCGAAGTTTCTGCAGTCTGATGCTACTGGTAGTTTTGTGGTTCCAGCTTCATTGAAGGTTGATCATGATGACTATAAATACCAGGGAGATCCTTCCCTTTTCAGTTCCTCTGTCGTGCCGTCTTTAACCAACATGGTTATGTGCAGATGA
Protein sequence

>Msa0808090

MALKERLASSSETTSSQDENEKRRYVTWEEKFVSMDKGRREVRYFLKKKSGELDLALIGKEKSSRHMSYHYAIRNSSFAPFFRLKSRTQVVHWLDSIVQDSSSRDANMAVEKHGYEHEIGTLKENQLQTLHPCSKEFTWLGLPWTCRKRRNHYQAYRKNGFQISVYDFVFVLAEENKRLVAYLEDMYEGSKGNKMVVVRWFHRIDEVGFVLPHSFSEREVYFSPYLQRLSIECIDGLTSVLSPQHYAKYRNKARHARPEPFVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGSSGKSDDGPELEENLHSSSAIRPKKKQRCTKVVGKDAVEFGSLQLEKLSNCKIDAKTSSSNKLEGSVKLVGTTKLATIKETNEASHVRAHFLSAVGILRSGIFFLTAIGRLISGKDKSGSNVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEAKKLEEWILASRPVVPDDLGLRVDERTKIRPLSEKRGISFVGDVGYIVDAWWHDGWWEGIVVQKESDDKYHVYFPGEKKMSIFAPCNLRHSRDWTGNGWVKVRERPDVVTCIASSLKTKQSSCKSEDSKSTVASMGDGIQSRQADTYSGSSEKDKLRKTEEVPDLVKDVLSLQLRWKSSRKRNRSGTSQQKQQSNDIHRKLSPKFLQSDATGSFVVPASLKVDHDDYKYQGDPSLFSSSVVPSLTNMVMCR*