AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542560 MtrunA17_Chr4g0033361 98.801 584 7 0 1 584 1 584 0.0 1215
Msa0542560 MtrunA17_Chr2g0329221 80.268 598 102 4 1 584 1 596 0.0 967
Msa0542560 MtrunA17_Chr3g0110331 71.160 586 153 6 1 582 1 574 0.0 840
Msa0542560 MtrunA17_Chr3g0110341 69.244 582 149 5 1 582 30 581 0.0 792
Msa0542560 MtrunA17_Chr5g0447801 83.746 283 46 0 254 536 3 285 5.84e-177 502
Msa0542560 MtrunA17_Chr4g0038181 41.841 478 233 9 57 519 2 449 4.14e-128 383
Msa0542560 MtrunA17_Chr4g0034371 29.423 537 336 13 18 529 2 520 5.12e-65 222
Msa0542560 MtrunA17_Chr4g0038201 36.438 365 164 11 38 395 10 313 6.25e-61 205
Msa0542560 MtrunA17_Chr4g0038191 56.667 90 38 1 430 519 2 90 1.62e-26 104
Msa0542560 MtrunA17_Chr5g0434721 25.229 218 121 6 117 329 134 314 3.88e-15 77.0
Msa0542560 MtrunA17_Chr3g0103961 24.359 234 166 7 102 329 20 248 1.21e-13 71.2
Msa0542560 MtrunA17_Chr3g0103941 24.123 228 152 9 124 343 33 247 1.09e-12 68.6
Msa0542560 MtrunA17_Chr2g0301841 25.743 202 140 6 129 325 88 284 5.13e-12 67.0
Msa0542560 MtrunA17_Chr4g0029991 26.190 210 135 7 136 331 306 509 1.33e-11 67.4
Msa0542560 MtrunA17_Chr3g0103931 24.402 209 146 7 127 330 43 244 1.65e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542560 AT2G31510.1 72.887 568 138 5 1 559 1 561 0.0 847
Msa0542560 AT1G65430.1 69.338 574 159 4 18 584 4 567 0.0 823
Msa0542560 AT2G31510.3 76.892 489 109 2 74 559 2 489 0.0 792
Msa0542560 AT2G31510.2 74.206 504 118 3 1 498 1 498 0.0 792
Msa0542560 AT1G05890.1 70.385 520 138 4 20 533 16 525 0.0 768
Msa0542560 AT1G05890.2 73.684 475 122 2 59 533 96 567 0.0 754
Msa0542560 AT2G31770.1 56.673 517 195 8 16 522 3 500 0.0 599
Msa0542560 AT2G31760.1 59.140 465 171 6 57 519 40 487 0.0 582
Msa0542560 AT2G31780.1 55.677 458 179 8 1 451 1 441 0.0 520
Msa0542560 AT1G05880.2 39.407 472 253 8 61 523 40 487 8.61e-108 333
Msa0542560 AT1G05880.1 39.195 472 247 10 61 523 40 480 2.53e-103 321
Msa0542560 AT1G05880.3 38.546 454 246 8 61 505 40 469 2.07e-97 305
Msa0542560 AT4G34370.1 30.490 551 330 18 19 535 2 533 9.14e-68 231
Msa0542560 AT2G16090.1 29.744 585 341 18 19 559 2 560 8.44e-64 220
Msa0542560 AT2G16090.4 29.188 579 346 16 19 559 2 554 1.11e-62 217
Msa0542560 AT2G16090.3 30.286 525 313 15 19 516 2 500 1.59e-62 216
Msa0542560 AT3G27710.1 29.412 476 294 14 62 516 45 499 5.55e-59 206
Msa0542560 AT2G16090.2 29.865 519 302 15 82 559 3 500 1.27e-58 205
Msa0542560 AT5G63750.1 29.541 501 297 15 57 519 6 488 2.38e-58 204
Msa0542560 AT2G16090.5 30.501 459 274 12 82 516 3 440 2.60e-57 200
Msa0542560 AT5G08730.1 27.484 473 307 10 58 523 6 449 4.51e-56 197
Msa0542560 AT5G63730.1 27.190 548 315 18 52 580 4 486 2.79e-50 181
Msa0542560 AT4G34370.2 33.333 378 207 14 187 535 5 366 9.70e-48 172
Msa0542560 AT3G27720.1 32.047 337 190 10 199 516 143 459 8.48e-43 160
Msa0542560 AT5G63760.1 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0542560 AT5G63760.3 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0542560 AT5G63760.2 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0542560 AT5G63760.4 28.021 389 207 15 208 580 2 333 1.16e-33 131
Msa0542560 AT5G10370.1 26.693 251 170 9 87 330 1512 1755 7.18e-12 69.3
Msa0542560 AT2G26135.1 26.291 213 139 8 121 325 140 342 1.89e-11 66.6
Msa0542560 AT3G45580.1 29.469 207 124 10 136 329 172 369 2.26e-11 66.6

Find 163 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAGTCCATTGAAGAATT+TGG 0.153603 4_1:+27652230 None:intergenic
CCAGCAAAATTCAAATTTAC+AGG 0.232442 4_1:+27648824 None:intergenic
ATCGACGTTGATTGCAAATC+TGG 0.244897 4_1:+27645206 None:intergenic
AAGGAATAGAAGTTGAAAAT+TGG 0.256098 4_1:+27652388 None:intergenic
CAAGCCCTAGATTCTCGATT+TGG 0.256493 4_1:-27652256 Msa0542560:five_prime_UTR
TCTTCATCGTCTTCACATAT+TGG 0.270709 4_1:+27645091 None:intergenic
TTCGATTGGTCGCTTGCATT+TGG 0.271459 4_1:+27648884 None:intergenic
ATGTGATGATGGTACGTAAA+AGG 0.297606 4_1:+27652357 None:intergenic
GAATTATATACCATATCATT+TGG 0.302570 4_1:-27644829 Msa0542560:three_prime_UTR
GATATCAGATTCCTTCAATA+TGG 0.313478 4_1:+27651307 None:intergenic
TATCTCACCTCGCTAGTATT+AGG 0.330743 4_1:+27650588 None:intergenic
TGGCCCACCGCTCATAATAA+TGG 0.335297 4_1:+27648211 None:intergenic
CCCACTTGTGGCGCTGCTAT+TGG 0.344918 4_1:-27650050 Msa0542560:CDS
GGGAGCAGTAAGGGGAGAGC+TGG 0.349500 4_1:-27645328 Msa0542560:CDS
AGTCATTGAATTCTTTAGAT+TGG 0.359218 4_1:+27645581 None:intergenic
TCGATTGGTCGCTTGCATTT+GGG 0.365336 4_1:+27648885 None:intergenic
ATTACAAATCCCAAATGATA+TGG 0.368424 4_1:+27644819 None:intergenic
TGTCATCTTCCTGTCTTACT+TGG 0.369228 4_1:+27651285 None:intergenic
TTATATACACGAATATATCT+AGG 0.373577 4_1:+27644903 None:intergenic
GTCACAGCTTAAGTTTATTA+CGG 0.378239 4_1:-27646079 Msa0542560:CDS
CCGAAAAGCGGTTGGCTTGT+TGG 0.378590 4_1:-27650631 Msa0542560:CDS
CTATCTGATGTAGATGCTAA+TGG 0.382104 4_1:-27645391 Msa0542560:CDS
TATGCACGATGCTCACGATA+TGG 0.384878 4_1:-27652201 Msa0542560:CDS
TACTACTTCGTCACCACAAT+TGG 0.386991 4_1:-27651214 Msa0542560:intron
GGGAGAGCTGGGAGAGGAAA+GGG 0.387635 4_1:-27645316 Msa0542560:CDS
CGTGTATATAAATAACCTTA+TGG 0.392253 4_1:-27644891 Msa0542560:three_prime_UTR
GGATCCCAAATCGAGAATCT+AGG 0.392687 4_1:+27652251 None:intergenic
TTATATCGAAGACAATAAAA+AGG 0.396653 4_1:-27649958 Msa0542560:intron
AATTATATACCATATCATTT+GGG 0.399795 4_1:-27644828 Msa0542560:three_prime_UTR
ATCCATACTGTTTCTCATGC+TGG 0.403926 4_1:-27650393 Msa0542560:CDS
GTATTAGGATGCTGGACAAC+TGG 0.406004 4_1:+27650603 None:intergenic
AACTATCCTCGCTCTGGGAT+TGG 0.407143 4_1:-27650433 Msa0542560:CDS
AAGCCCTAGATTCTCGATTT+GGG 0.408853 4_1:-27652255 Msa0542560:five_prime_UTR
TATCTGATGTAGATGCTAAT+GGG 0.411020 4_1:-27645390 Msa0542560:CDS
GACTTTCGTACAAAATTAGC+TGG 0.416189 4_1:-27645562 Msa0542560:CDS
GCAGCGCCACAAGTGGGTTC+AGG 0.416212 4_1:+27650056 None:intergenic
TTGGGATCCAAATTCTTCAA+TGG 0.417203 4_1:-27652237 Msa0542560:exon
TCCCAGCATGAGAAACAGTA+TGG 0.418225 4_1:+27650391 None:intergenic
GGGTTCTTCTCATTATATGC+TGG 0.420860 4_1:-27645116 Msa0542560:three_prime_UTR
ACTGCACCAAAGGCTGAGAT+TGG 0.427723 4_1:-27645137 Msa0542560:three_prime_UTR
AACAAATTCAGCTGAGTGAT+AGG 0.433492 4_1:+27645037 None:intergenic
TTTGAAAACTATCCTCGCTC+TGG 0.436202 4_1:-27650439 Msa0542560:CDS
GGGGAGAGCTGGGAGAGGAA+AGG 0.438486 4_1:-27645317 Msa0542560:CDS
TTAGTGAGGGCTTTAGAGAA+TGG 0.439616 4_1:-27645415 Msa0542560:CDS
TATATAAATAACCTTATGGT+TGG 0.440179 4_1:-27644887 Msa0542560:three_prime_UTR
GGCCCACCGCTCATAATAAT+GGG 0.441437 4_1:+27648212 None:intergenic
CTGAAATGGACGTATGCATA+TGG 0.442573 4_1:-27645823 Msa0542560:CDS
AAGAACCCAATCTCAGCCTT+TGG 0.445930 4_1:+27645131 None:intergenic
TACTGAAAGAAGAAGGGAAA+TGG 0.451324 4_1:-27648259 Msa0542560:CDS
GGTCGCTTGCATTTGGGACA+TGG 0.453953 4_1:+27648891 None:intergenic
TGTAGAAATCGTCATCTTCA+AGG 0.456356 4_1:+27652174 None:intergenic
CACTGGACGATGAGCCTCCT+CGG 0.458483 4_1:+27649431 None:intergenic
TCCGTTAGAAACACTTGTTA+AGG 0.461348 4_1:-27645169 Msa0542560:three_prime_UTR
ATGATGATACTGAAAGAAGA+AGG 0.463836 4_1:-27648266 Msa0542560:CDS
GGAGCAGTAAGGGGAGAGCT+GGG 0.464600 4_1:-27645327 Msa0542560:CDS
ACATCCAGGACCATCATTGA+TGG 0.478158 4_1:+27650094 None:intergenic
AGCAGCTAAGCAAGAGGGAG+TGG 0.478756 4_1:-27648380 Msa0542560:intron
TCCATACTGTTTCTCATGCT+GGG 0.479243 4_1:-27650392 Msa0542560:CDS
AGTGTAGGAGAGTGCTGAAA+TGG 0.479640 4_1:-27645837 Msa0542560:CDS
ATAAGATCTACGAAGGTAAC+GGG 0.483111 4_1:+27649977 None:intergenic
ATCTAGGGCTTGAGAAATTG+AGG 0.492539 4_1:+27652267 None:intergenic
TCAAAGTGGTGTCCTGCCCC+TGG 0.492940 4_1:-27649634 Msa0542560:CDS
CAGAGTCTGAAAACATGAAC+TGG 0.493565 4_1:-27649368 Msa0542560:intron
GATACATACAGATTGGTTGC+TGG 0.496836 4_1:+27648191 None:intergenic
ATCTGATATCCAAGTAAGAC+AGG 0.497385 4_1:-27651294 Msa0542560:CDS
AGGTGAAGCAGAATCTGGTC+TGG 0.499622 4_1:-27645659 Msa0542560:CDS
TATTACGGAGGCCTGGCTGC+AGG 0.501896 4_1:-27646064 Msa0542560:intron
TCAACAAGATAGTTGACAAA+AGG 0.502770 4_1:+27644795 None:intergenic
ACCAATAGCAGCGCCACAAG+TGG 0.504223 4_1:+27650049 None:intergenic
ATAAACTTAAGCTGTGACTC+AGG 0.505087 4_1:+27646084 None:intergenic
GGAAATGGCGAAGAATTCAT+TGG 0.506032 4_1:-27648244 Msa0542560:CDS
TACTGTTTCTCATGCTGGGA+AGG 0.514636 4_1:-27650388 Msa0542560:intron
ATATAAATAACCTTATGGTT+GGG 0.517339 4_1:-27644886 Msa0542560:three_prime_UTR
TATCTACATAGGTTATGCCT+TGG 0.517708 4_1:-27648460 Msa0542560:intron
AAGTTGAAAATTGGAAGATA+AGG 0.517922 4_1:+27652397 None:intergenic
GAAATTGAATTTACCAATTG+TGG 0.519364 4_1:+27651201 None:intergenic
GTGCGTGGCCACTGCACCAA+AGG 0.519803 4_1:-27645147 Msa0542560:three_prime_UTR
AATCTCAGCCTTTGGTGCAG+TGG 0.521654 4_1:+27645139 None:intergenic
AAATGCTGCAGGGAGCAGTA+AGG 0.522523 4_1:-27645338 Msa0542560:CDS
CCTCGCTAGTATTAGGATGC+TGG 0.523850 4_1:+27650595 None:intergenic
AGCATCGTGCATATCATCTT+CGG 0.523950 4_1:+27652211 None:intergenic
CGATTTCTACAGTGGTGATA+CGG 0.524021 4_1:-27652162 Msa0542560:CDS
TTGAAAACTATCCTCGCTCT+GGG 0.528875 4_1:-27650438 Msa0542560:CDS
CTGCACCAAAGGCTGAGATT+GGG 0.530403 4_1:-27645136 Msa0542560:three_prime_UTR
ACCACAGTGCCACAGTCCAC+TGG 0.533681 4_1:+27649414 None:intergenic
TTAAGTTTATTACGGAGGCC+TGG 0.533852 4_1:-27646071 Msa0542560:CDS
TACGTAAAAGGAAAGAAGAA+AGG 0.534295 4_1:+27652369 None:intergenic
GATCCCAAATCGAGAATCTA+GGG 0.539031 4_1:+27652252 None:intergenic
CAGCAATTCCTCAGTGCTGA+AGG 0.541611 4_1:-27645604 Msa0542560:CDS
CAAAATTAGCTGGATTGACT+AGG 0.541759 4_1:-27645552 Msa0542560:intron
ACGTCCATCAATGATGGTCC+TGG 0.548432 4_1:-27650098 Msa0542560:CDS
TGAGCTCGTTGCTTTGCTGA+AGG 0.552429 4_1:+27645363 None:intergenic
ATCAGCACGTCCATCAATGA+TGG 0.552763 4_1:-27650104 Msa0542560:CDS
CAAATCATTTACCTGCAGCC+AGG 0.554241 4_1:+27646053 None:intergenic
ATAGGTTATGCCTTGGTGCA+TGG 0.554336 4_1:-27648453 Msa0542560:intron
TGATGATACTGAAAGAAGAA+GGG 0.556998 4_1:-27648265 Msa0542560:CDS
TACAGTGGTGATACGGAAGA+AGG 0.559004 4_1:-27652155 Msa0542560:CDS
GAAACACTTGTTAAGGTGCG+TGG 0.559118 4_1:-27645162 Msa0542560:three_prime_UTR
AATGCTGCAGGGAGCAGTAA+GGG 0.560155 4_1:-27645337 Msa0542560:CDS
ACTTAAGCTGTGACTCAGGT+TGG 0.561742 4_1:+27646088 None:intergenic
GAACTTCTGATGATAGTCAC+TGG 0.562651 4_1:-27645276 Msa0542560:CDS
CAGTTCTTTGAGTATTTGCA+AGG 0.563576 4_1:-27645766 Msa0542560:intron
AATCAACGTCGATGAAAATG+TGG 0.565537 4_1:-27645196 Msa0542560:exon
CTACTTCGAGAATTTAGTGA+GGG 0.566132 4_1:-27645428 Msa0542560:CDS
AGTAAGGGGAGAGCTGGGAG+AGG 0.566304 4_1:-27645322 Msa0542560:CDS
TGCTGTGGCCAGCTTACATG+TGG 0.566414 4_1:-27650469 Msa0542560:intron
TCTTCCAGATAGTTGAGTGT+AGG 0.573883 4_1:-27645852 Msa0542560:intron
GCATATTCACAACCAGGGGC+AGG 0.573937 4_1:+27649622 None:intergenic
CAGCAAAATTCAAATTTACA+GGG 0.574826 4_1:+27648825 None:intergenic
TGTTGTAACATAATAGATGC+TGG 0.575149 4_1:-27644981 Msa0542560:three_prime_UTR
TCAGACCATGGTGAAAGAAC+TGG 0.575256 4_1:-27648430 Msa0542560:CDS
GGGATTGGAATGGCTTCTTG+TGG 0.575363 4_1:-27650418 Msa0542560:CDS
AGTGATTATGATGATGATGC+TGG 0.577389 4_1:-27652116 Msa0542560:CDS
TCCTCGCTCTGGGATTGGAA+TGG 0.579366 4_1:-27650428 Msa0542560:CDS
GTAGAAATCGTCATCTTCAA+GGG 0.579796 4_1:+27652175 None:intergenic
AAATTCAGCTGAGTGATAGG+AGG 0.580861 4_1:+27645040 None:intergenic
ACTGTGGCACTGTGGTAAAG+TGG 0.587937 4_1:-27649407 Msa0542560:CDS
ACACCCATTATTATGAGCGG+TGG 0.591402 4_1:-27648215 Msa0542560:CDS
TATAAGATCTACGAAGGTAA+CGG 0.591928 4_1:+27649976 None:intergenic
GAGCGAGTCCGAAAAGCGGT+TGG 0.598853 4_1:-27650639 Msa0542560:CDS
CATCTCAACATCAAACATCC+AGG 0.599803 4_1:+27650080 None:intergenic
CCAATAGCAGCGCCACAAGT+GGG 0.601504 4_1:+27650050 None:intergenic
AATTCAGCTGAGTGATAGGA+GGG 0.602797 4_1:+27645041 None:intergenic
GTACTATTTACCTGAGCATG+AGG 0.605750 4_1:-27645800 Msa0542560:CDS
ATGCTGCAGGGAGCAGTAAG+GGG 0.605774 4_1:-27645336 Msa0542560:CDS
CACCCATTATTATGAGCGGT+GGG 0.609091 4_1:-27648214 Msa0542560:CDS
ACCTTAACAAGTGTTTCTAA+CGG 0.610291 4_1:+27645168 None:intergenic
TGAAATGGACGTATGCATAT+GGG 0.610291 4_1:-27645822 Msa0542560:CDS
AGATGTCCTGAACCCACTTG+TGG 0.620859 4_1:-27650062 Msa0542560:CDS
CAAAATTCAAATTTACAGGG+TGG 0.621414 4_1:+27648828 None:intergenic
TTATGAAGCAGCTAAGCAAG+AGG 0.623330 4_1:-27648386 Msa0542560:CDS
CGAGGAGGCTCATCGTCCAG+TGG 0.625879 4_1:-27649430 Msa0542560:CDS
ATCTGATGTAGATGCTAATG+GGG 0.630234 4_1:-27645389 Msa0542560:CDS
TGATACGGAAGAAGGTGCGA+TGG 0.632626 4_1:-27652147 Msa0542560:CDS
GAAGATGACGATTTCTACAG+TGG 0.633360 4_1:-27652170 Msa0542560:CDS
TATGAAGCAGCTAAGCAAGA+GGG 0.635282 4_1:-27648385 Msa0542560:CDS
TGAAGAGCGAGTCCGAAAAG+CGG 0.637498 4_1:-27650643 Msa0542560:CDS
ATCAACGTCGATGAAAATGT+GGG 0.639035 4_1:-27645195 Msa0542560:exon
GATTGAGTCTCGTCGACCTG+AGG 0.639074 4_1:-27652069 Msa0542560:intron
GCCATTCCAATCCCAGAGCG+AGG 0.643551 4_1:+27650427 None:intergenic
GACCATGGTGAAAGAACTGG+TGG 0.643713 4_1:-27648427 Msa0542560:CDS
ACAGCTTAAGTTTATTACGG+AGG 0.646409 4_1:-27646076 Msa0542560:CDS
CTTCGATATAAGATCTACGA+AGG 0.648378 4_1:+27649970 None:intergenic
GCTCATCGTCCAGTGGACTG+TGG 0.650054 4_1:-27649423 Msa0542560:CDS
TACTATTTACCTGAGCATGA+GGG 0.652156 4_1:-27645799 Msa0542560:CDS
ACTACTTCGAGAATTTAGTG+AGG 0.655176 4_1:-27645429 Msa0542560:CDS
GTAACTGCATATTCACAACC+AGG 0.655441 4_1:+27649616 None:intergenic
AACAAAAGCTATACGAACAG+AGG 0.655471 4_1:+27649557 None:intergenic
AACTGCATATTCACAACCAG+GGG 0.659172 4_1:+27649618 None:intergenic
ATTGCAAATCTGGCATGTGG+TGG 0.660392 4_1:+27645216 None:intergenic
AACCACCAGTTCTTTCACCA+TGG 0.660461 4_1:+27648425 None:intergenic
TCAGTAAAGTGCATGATGCA+TGG 0.665829 4_1:-27650674 Msa0542560:CDS
TAACTGCATATTCACAACCA+GGG 0.669788 4_1:+27649617 None:intergenic
TAGATTGGCCTTCAGCACTG+AGG 0.685503 4_1:+27645596 None:intergenic
GATACACCCATTATTATGAG+CGG 0.686220 4_1:-27648218 Msa0542560:CDS
TTGATTGCAAATCTGGCATG+TGG 0.691443 4_1:+27645213 None:intergenic
GAATCTACAGTGCACCGAGG+AGG 0.691639 4_1:-27649445 Msa0542560:intron
CCAGCATCCTAATACTAGCG+AGG 0.692364 4_1:-27650595 Msa0542560:intron
CATGGTCTGACCATGCACCA+AGG 0.699416 4_1:+27648443 None:intergenic
CTTGGTGCATGGTCAGACCA+TGG 0.701151 4_1:-27648442 Msa0542560:CDS
TCCAGTGGACTGTGGCACTG+TGG 0.734400 4_1:-27649415 Msa0542560:CDS
GGCAGATTTGACATTCACAG+AGG 0.749917 4_1:+27645237 None:intergenic
TGTGAATCTACAGTGCACCG+AGG 0.790165 4_1:-27649448 Msa0542560:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCTCTATATAATTTTT+TGG - chr4_1:27646681-27646700 Msa0542560:intron 10.0%
!!! TAAGAATTTTATAAATGAAA+TGG - chr4_1:27648038-27648057 Msa0542560:intron 10.0%
!!! TTTTGAACAATTATTTTTTT+GGG - chr4_1:27648638-27648657 Msa0542560:intron 10.0%
!! AATTAGATTTAGATAATATA+AGG + chr4_1:27650071-27650090 None:intergenic 10.0%
!! ATAAAATAAAAATGTGATGA+TGG + chr4_1:27644840-27644859 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTGATC+AGG - chr4_1:27645305-27645324 Msa0542560:CDS 15.0%
!! AATCAACATTAAAAAAAACA+GGG + chr4_1:27645387-27645406 None:intergenic 15.0%
!! TAATCAACATTAAAAAAAAC+AGG + chr4_1:27645388-27645407 None:intergenic 15.0%
!! AAAAAAAACATATTCAAAAC+AGG + chr4_1:27646013-27646032 None:intergenic 15.0%
!!! TTTACAAAACAATCAATTTT+AGG + chr4_1:27646039-27646058 None:intergenic 15.0%
!!! TAAAATTGATTGTTTTGTAA+AGG - chr4_1:27646038-27646057 Msa0542560:intron 15.0%
!! ATAAATATAACATATGAAAC+AGG + chr4_1:27646977-27646996 None:intergenic 15.0%
!! AATATATCTAATGTCTTAAA+CGG - chr4_1:27647915-27647934 Msa0542560:intron 15.0%
!! ATTTGATTAAAAAACATGTT+GGG + chr4_1:27648411-27648430 None:intergenic 15.0%
!! AATTTGATTAAAAAACATGT+TGG + chr4_1:27648412-27648431 None:intergenic 15.0%
!! TAGTTTATATAACATAGAAA+AGG - chr4_1:27648575-27648594 Msa0542560:intron 15.0%
!! CAAAAAAATAATTGTTCAAA+AGG + chr4_1:27648639-27648658 None:intergenic 15.0%
!!! CTTTTGAACAATTATTTTTT+TGG - chr4_1:27648637-27648656 Msa0542560:intron 15.0%
!!! TTTGAACAATTATTTTTTTG+GGG - chr4_1:27648639-27648658 Msa0542560:intron 15.0%
!!! ATAAAAAAAAAGTCTTATCT+CGG - chr4_1:27649550-27649569 Msa0542560:intron 15.0%
!! ATGTATATAATTTATGTGAA+AGG + chr4_1:27649877-27649896 None:intergenic 15.0%
!! CATAAATTATATACATGTAT+AGG - chr4_1:27649881-27649900 Msa0542560:intron 15.0%
!!! AAATCAATTTAGTTTTACAT+GGG + chr4_1:27649972-27649991 None:intergenic 15.0%
!!! AAAATCAATTTAGTTTTACA+TGG + chr4_1:27649973-27649992 None:intergenic 15.0%
!!! ACTTGATGATAATTATTTAT+AGG + chr4_1:27650184-27650203 None:intergenic 15.0%
!!! TATTTTTATGATCTTTATGT+TGG - chr4_1:27651223-27651242 Msa0542560:CDS 15.0%
!!! CATTTTTAAAAATCATGATA+AGG - chr4_1:27652323-27652342 Msa0542560:five_prime_UTR 15.0%
!! AATTATATACCATATCATTT+GGG - chr4_1:27652355-27652374 Msa0542560:five_prime_UTR 15.0%
!! TACAGAATTTATGAAATGTT+TGG - chr4_1:27645445-27645464 Msa0542560:intron 20.0%
!!! AAAAAAAACAAGCTTTTGTT+TGG + chr4_1:27645530-27645549 None:intergenic 20.0%
!!! TCACTAAATCAATCTTTTTA+AGG + chr4_1:27645562-27645581 None:intergenic 20.0%
!!! TAGATTCTGTTTTTTTTTGT+AGG - chr4_1:27645658-27645677 Msa0542560:CDS 20.0%
!!! TTTTTTTTGTTGGTTTTGAA+TGG - chr4_1:27645746-27645765 Msa0542560:intron 20.0%
!! AAATGAATATGATTCAAATG+AGG - chr4_1:27646203-27646222 Msa0542560:intron 20.0%
!!! AAAAAAAAAGTGTTTCTGTA+TGG - chr4_1:27646324-27646343 Msa0542560:intron 20.0%
!!! TGTTAATTCTGATCAAATTT+TGG - chr4_1:27646848-27646867 Msa0542560:intron 20.0%
!!! ATATGTCCTTTTTATTGTTT+TGG - chr4_1:27646884-27646903 Msa0542560:intron 20.0%
!!! TATGTCCTTTTTATTGTTTT+GGG - chr4_1:27646885-27646904 Msa0542560:intron 20.0%
!! TTATATCGAAGACAATAAAA+AGG - chr4_1:27647225-27647244 Msa0542560:intron 20.0%
!! CAAAAGAAGTAAAAAAAATG+AGG + chr4_1:27647518-27647537 None:intergenic 20.0%
!! AAATTCTTATAAATGAAGTG+AGG + chr4_1:27648027-27648046 None:intergenic 20.0%
!!! TTGATACATTTTATCTACAT+AGG - chr4_1:27648712-27648731 Msa0542560:intron 20.0%
!! ATCAATAATTTATAGTTGCT+AGG - chr4_1:27649085-27649104 Msa0542560:intron 20.0%
!!! CTAATATTTTGATAGCTAAA+TGG - chr4_1:27649112-27649131 Msa0542560:intron 20.0%
!!! TATGTATATTTTTTGTTCAC+TGG - chr4_1:27649191-27649210 Msa0542560:intron 20.0%
!!! GAGATAAGACTTTTTTTTTA+TGG + chr4_1:27649551-27649570 None:intergenic 20.0%
!!! AATCAATTTAGTTTTACATG+GGG + chr4_1:27649971-27649990 None:intergenic 20.0%
!! TATCGAATAAGTATTAAACT+CGG + chr4_1:27650030-27650049 None:intergenic 20.0%
!! TATCTAAATCTCAGAATATT+TGG - chr4_1:27650098-27650117 Msa0542560:CDS 20.0%
!! AGCTAAAATTAATGCTAAAT+TGG + chr4_1:27650146-27650165 None:intergenic 20.0%
!!! TGAATTTTAATACATTGTCA+AGG - chr4_1:27650303-27650322 Msa0542560:intron 20.0%
!! ACTATAAAGTATAAACTAAC+CGG + chr4_1:27650497-27650516 None:intergenic 20.0%
!!! CAGTTTAAAATATAGAATCA+AGG + chr4_1:27650549-27650568 None:intergenic 20.0%
!! AGCTACAATACAAAATTAAA+AGG + chr4_1:27650795-27650814 None:intergenic 20.0%
!! AAAAAAAATCTAACTAGCAA+GGG + chr4_1:27650958-27650977 None:intergenic 20.0%
!!! TAATTAGAAACATGTGTTTT+TGG - chr4_1:27651461-27651480 Msa0542560:intron 20.0%
!! TATAGTTGAGTATTAATCAT+GGG + chr4_1:27651494-27651513 None:intergenic 20.0%
!! ATATAGTTGAGTATTAATCA+TGG + chr4_1:27651495-27651514 None:intergenic 20.0%
!!! TATTCTTAATTTTGATTTCC+TGG - chr4_1:27651705-27651724 Msa0542560:intron 20.0%
!!! TGTTGTTTATTTTCTGTTAT+AGG - chr4_1:27652165-27652184 Msa0542560:CDS 20.0%
!! TTATATACACGAATATATCT+AGG + chr4_1:27652283-27652302 None:intergenic 20.0%
!! TATATAAATAACCTTATGGT+TGG - chr4_1:27652296-27652315 Msa0542560:five_prime_UTR 20.0%
!! ATATAAATAACCTTATGGTT+GGG - chr4_1:27652297-27652316 Msa0542560:five_prime_UTR 20.0%
!! GAATTATATACCATATCATT+TGG - chr4_1:27652354-27652373 Msa0542560:five_prime_UTR 20.0%
! AAGGAATAGAAGTTGAAAAT+TGG + chr4_1:27644798-27644817 None:intergenic 25.0%
!! TAATGTTGCTTATGTGAATT+TGG - chr4_1:27645232-27645251 Msa0542560:CDS 25.0%
!! AAAAAAACAGGGTTTTTGTT+TGG + chr4_1:27645376-27645395 None:intergenic 25.0%
!! GTTGATTATGTGAATTTGTT+TGG - chr4_1:27645400-27645419 Msa0542560:CDS 25.0%
!! TTTGGTTTCTTGAAATTACT+TGG - chr4_1:27645418-27645437 Msa0542560:CDS 25.0%
! TTGGTTTCTTGAAATTACTT+GGG - chr4_1:27645419-27645438 Msa0542560:CDS 25.0%
!! AAGATTGATTTAGTGATTAG+TGG - chr4_1:27645566-27645585 Msa0542560:CDS 25.0%
!!! AGATAAGATGTTGGTTTTAA+TGG - chr4_1:27645634-27645653 Msa0542560:CDS 25.0%
!!! ATTCTGTTTTTTTTTGTAGG+TGG - chr4_1:27645661-27645680 Msa0542560:intron 25.0%
!!! ACTGTGTTTGTTTTTTTTGT+TGG - chr4_1:27645736-27645755 Msa0542560:intron 25.0%
!! GCAAAATTTTACCATATTGA+AGG - chr4_1:27645865-27645884 Msa0542560:intron 25.0%
! GAAATTGAATTTACCAATTG+TGG + chr4_1:27645985-27646004 None:intergenic 25.0%
!! TGAAGTCTTTTAAACCTTAT+TGG - chr4_1:27646270-27646289 Msa0542560:intron 25.0%
! GAAACAAATATCAACCAATA+AGG + chr4_1:27646287-27646306 None:intergenic 25.0%
! GAAAGTTAAAACACTAAAGA+AGG + chr4_1:27646361-27646380 None:intergenic 25.0%
! TCAGAATTAACAAAAGAAGA+GGG + chr4_1:27646840-27646859 None:intergenic 25.0%
! ATCAGAATTAACAAAAGAAG+AGG + chr4_1:27646841-27646860 None:intergenic 25.0%
! TATCACCCAAAACAATAAAA+AGG + chr4_1:27646893-27646912 None:intergenic 25.0%
! AAAAAACTTAAGATGGGTAT+AGG + chr4_1:27646940-27646959 None:intergenic 25.0%
!!! TATACCCATCTTAAGTTTTT+TGG - chr4_1:27646939-27646958 Msa0542560:intron 25.0%
!!! AAGTTTTTTGGTAGCTTTTA+TGG - chr4_1:27646951-27646970 Msa0542560:intron 25.0%
! AAAGAACAAAAAAGAACTGA+AGG + chr4_1:27647019-27647038 None:intergenic 25.0%
!!! TGACATTTTTTTGTCCTTTT+TGG - chr4_1:27647043-27647062 Msa0542560:intron 25.0%
! TTGACATATTTATTATGTCC+TGG - chr4_1:27647364-27647383 Msa0542560:intron 25.0%
! GGAATTGTTTCCAATTATTA+CGG - chr4_1:27647666-27647685 Msa0542560:intron 25.0%
! AAATCCAATACCGTAATAAT+TGG + chr4_1:27647679-27647698 None:intergenic 25.0%
! TCAACTTAAGCATGAAAATA+TGG + chr4_1:27647976-27647995 None:intergenic 25.0%
! AGTTATAGTCCAAACATAAA+GGG + chr4_1:27648081-27648100 None:intergenic 25.0%
! AAGTTATAGTCCAAACATAA+AGG + chr4_1:27648082-27648101 None:intergenic 25.0%
!! AATAATCCATGGACTATATT+AGG - chr4_1:27648115-27648134 Msa0542560:intron 25.0%
!!! ATGAATAAATTGCTGCTTTT+TGG - chr4_1:27648200-27648219 Msa0542560:CDS 25.0%
! AATTAAATTAACAGTCAGCT+CGG + chr4_1:27648245-27648264 None:intergenic 25.0%
! CTGTTAATTTAATTACTTGC+AGG - chr4_1:27648251-27648270 Msa0542560:CDS 25.0%
! CAGCAAAATTCAAATTTACA+GGG + chr4_1:27648361-27648380 None:intergenic 25.0%
! TATATTGCATTCTATGTTCT+TGG - chr4_1:27648431-27648450 Msa0542560:CDS 25.0%
! TTTCAAGAAAGTTACAAGTA+TGG - chr4_1:27648496-27648515 Msa0542560:intron 25.0%
! TTCAAGAAAGTTACAAGTAT+GGG - chr4_1:27648497-27648516 Msa0542560:intron 25.0%
! AAGTTTATTATTTCGTTGCA+TGG - chr4_1:27649143-27649162 Msa0542560:intron 25.0%
!! TCATAAAAGCTTAAGTTGTT+AGG + chr4_1:27649254-27649273 None:intergenic 25.0%
!! TGCACAAACATAAAATTTTG+CGG + chr4_1:27649576-27649595 None:intergenic 25.0%
! TTAACCATATAATCCACATA+GGG + chr4_1:27649674-27649693 None:intergenic 25.0%
!! GAAGATTTTTCTATAACTAG+AGG + chr4_1:27649762-27649781 None:intergenic 25.0%
! TCGTTGTAAATATCTTTACT+TGG - chr4_1:27649801-27649820 Msa0542560:intron 25.0%
! TGTGAAAGGAAAAATAATGA+TGG + chr4_1:27649863-27649882 None:intergenic 25.0%
! TTTATGTGATGTGAATATCT+TGG - chr4_1:27649990-27650009 Msa0542560:CDS 25.0%
! TTCGATATATGTTTATCATG+TGG - chr4_1:27650043-27650062 Msa0542560:CDS 25.0%
! TGTTGAATGATTGACTAATA+AGG - chr4_1:27650404-27650423 Msa0542560:CDS 25.0%
! TTTGAATATGCAAACTTACA+TGG - chr4_1:27650458-27650477 Msa0542560:CDS 25.0%
! ACAATACAAAATTAAAAGGC+CGG + chr4_1:27650791-27650810 None:intergenic 25.0%
! ATAAGCTACTATTGTAGAAA+TGG + chr4_1:27650932-27650951 None:intergenic 25.0%
! CAAAAAAAATCTAACTAGCA+AGG + chr4_1:27650959-27650978 None:intergenic 25.0%
! GAAATGAACTTCAGAAATTA+TGG + chr4_1:27651271-27651290 None:intergenic 25.0%
!!! AATTTCTGAAGTTCATTTCA+AGG - chr4_1:27651272-27651291 Msa0542560:CDS 25.0%
! ATAGTTGAGTATTAATCATG+GGG + chr4_1:27651493-27651512 None:intergenic 25.0%
!!! CTCAACTATATTTTGTTTTC+AGG - chr4_1:27651504-27651523 Msa0542560:intron 25.0%
! AGTCATTGAATTCTTTAGAT+TGG + chr4_1:27651605-27651624 None:intergenic 25.0%
! CGTGTATATAAATAACCTTA+TGG - chr4_1:27652292-27652311 Msa0542560:five_prime_UTR 25.0%
! ATTACAAATCCCAAATGATA+TGG + chr4_1:27652367-27652386 None:intergenic 25.0%
TACGTAAAAGGAAAGAAGAA+AGG + chr4_1:27644817-27644836 None:intergenic 30.0%
GAGAAATTGATATATACCTC+AGG + chr4_1:27645133-27645152 None:intergenic 30.0%
GAAAACATGTTCAGAAAATG+TGG + chr4_1:27645348-27645367 None:intergenic 30.0%
! TTGTTTGGTTTCAGAAAATG+TGG + chr4_1:27645515-27645534 None:intergenic 30.0%
! ATTGATTTAGTGATTAGTGG+TGG - chr4_1:27645569-27645588 Msa0542560:CDS 30.0%
AGGTTAATTGCAGTAATTGT+TGG - chr4_1:27645599-27645618 Msa0542560:CDS 30.0%
GCTATAATGAGATAAGATGT+TGG - chr4_1:27645625-27645644 Msa0542560:CDS 30.0%
AACCAAACTAATCAGTTACA+CGG + chr4_1:27645837-27645856 None:intergenic 30.0%
GATATCAGATTCCTTCAATA+TGG + chr4_1:27645879-27645898 None:intergenic 30.0%
!!! ATGTGTTTTAGTCCTCATAA+AGG - chr4_1:27646136-27646155 Msa0542560:intron 30.0%
TTAGACTTTAGTCCTTTATG+AGG + chr4_1:27646151-27646170 None:intergenic 30.0%
CAGAATTAACAAAAGAAGAG+GGG + chr4_1:27646839-27646858 None:intergenic 30.0%
GCTACCAAAAAACTTAAGAT+GGG + chr4_1:27646946-27646965 None:intergenic 30.0%
AGCTACCAAAAAACTTAAGA+TGG + chr4_1:27646947-27646966 None:intergenic 30.0%
ACAAAAAAGAACTGAAGGAA+AGG + chr4_1:27647014-27647033 None:intergenic 30.0%
TATAAGATCTACGAAGGTAA+CGG + chr4_1:27647210-27647229 None:intergenic 30.0%
TGGATAACATATAGTCTACA+TGG + chr4_1:27647293-27647312 None:intergenic 30.0%
CGCATGATGAAAATGAAATA+TGG + chr4_1:27647313-27647332 None:intergenic 30.0%
TTGATTGAGAAAAGTAGTGA+AGG + chr4_1:27647444-27647463 None:intergenic 30.0%
!!! TTGTTTTTGTCTAGTCAAAG+TGG - chr4_1:27647535-27647554 Msa0542560:intron 30.0%
GTTTCCAATTATTACGGTAT+TGG - chr4_1:27647672-27647691 Msa0542560:intron 30.0%
ATGTCTTAAACGGATACTAA+TGG - chr4_1:27647925-27647944 Msa0542560:intron 30.0%
!! ACTAATGGAGAGTATTTAAG+CGG - chr4_1:27647940-27647959 Msa0542560:intron 30.0%
!!! TTTTCATGCTTAAGTTGAAG+TGG - chr4_1:27647978-27647997 Msa0542560:intron 30.0%
TAGAATCCTAATATAGTCCA+TGG + chr4_1:27648124-27648143 None:intergenic 30.0%
ATTAAATTAACAGTCAGCTC+GGG + chr4_1:27648244-27648263 None:intergenic 30.0%
!!! CATCCTTGATTTTTTTCGAT+TGG + chr4_1:27648316-27648335 None:intergenic 30.0%
CAAAATTCAAATTTACAGGG+TGG + chr4_1:27648358-27648377 None:intergenic 30.0%
CCAGCAAAATTCAAATTTAC+AGG + chr4_1:27648362-27648381 None:intergenic 30.0%
! CCTGTAAATTTGAATTTTGC+TGG - chr4_1:27648359-27648378 Msa0542560:intron 30.0%
AGTTACAAGTATGGGTATAT+TGG - chr4_1:27648505-27648524 Msa0542560:intron 30.0%
! GAACAAACTTTTCTTGATTC+AGG - chr4_1:27648841-27648860 Msa0542560:CDS 30.0%
ATGATGATACTGAAAGAAGA+AGG - chr4_1:27648917-27648936 Msa0542560:intron 30.0%
TGATGATACTGAAAGAAGAA+GGG - chr4_1:27648918-27648937 Msa0542560:intron 30.0%
ATAGAGTGATACATACAGAT+TGG + chr4_1:27649002-27649021 None:intergenic 30.0%
TCACTCTATACTTACTTGTT+CGG - chr4_1:27649013-27649032 Msa0542560:intron 30.0%
!! GAAAGTACATCTATGGTTTT+CGG + chr4_1:27649230-27649249 None:intergenic 30.0%
TTTCTTTGGTCTCTCTTAAA+AGG - chr4_1:27649461-27649480 Msa0542560:intron 30.0%
! ATTTTCCTTTTGAACTTGAG+TGG - chr4_1:27649600-27649619 Msa0542560:CDS 30.0%
GTTAACCATATAATCCACAT+AGG + chr4_1:27649675-27649694 None:intergenic 30.0%
!!! TTATCTTTTAGTCTTGGTTC+TGG + chr4_1:27649714-27649733 None:intergenic 30.0%
AGAACCAAGACTAAAAGATA+AGG - chr4_1:27649713-27649732 Msa0542560:intron 30.0%
! TTTTTCTATAACTAGAGGTG+TGG + chr4_1:27649757-27649776 None:intergenic 30.0%
!! CTAAGAAAGGTGTTATGATT+GGG + chr4_1:27649836-27649855 None:intergenic 30.0%
AGATTCATGGAAAGATATCA+GGG + chr4_1:27649919-27649938 None:intergenic 30.0%
AAGATTCATGGAAAGATATC+AGG + chr4_1:27649920-27649939 None:intergenic 30.0%
CTACTTACTACAAAGATTCA+TGG + chr4_1:27649932-27649951 None:intergenic 30.0%
!! ATTCTGAGATTTAGATAGCA+CGG + chr4_1:27650095-27650114 None:intergenic 30.0%
AGAATCAAACTTTATACCAC+AGG + chr4_1:27650255-27650274 None:intergenic 30.0%
TCAATCATTCAACATAGTCA+AGG + chr4_1:27650398-27650417 None:intergenic 30.0%
ATATGCAAACTTACATGGAA+TGG - chr4_1:27650463-27650482 Msa0542560:intron 30.0%
AGTGATTTCTTTCTTGATTG+AGG - chr4_1:27650514-27650533 Msa0542560:intron 30.0%
!! TGTATTTTGTGTTACTACTC+TGG - chr4_1:27650567-27650586 Msa0542560:intron 30.0%
CAATACAAAATTAAAAGGCC+GGG + chr4_1:27650790-27650809 None:intergenic 30.0%
GTCACAGCTTAAGTTTATTA+CGG - chr4_1:27651104-27651123 Msa0542560:intron 30.0%
TCATTTCAAGGTGAAATAGA+AGG - chr4_1:27651284-27651303 Msa0542560:CDS 30.0%
ACACTACGAAAAAATATACC+AGG + chr4_1:27651726-27651745 None:intergenic 30.0%
TATCTGATGTAGATGCTAAT+GGG - chr4_1:27651793-27651812 Msa0542560:intron 30.0%
! ACCTTAACAAGTGTTTCTAA+CGG + chr4_1:27652018-27652037 None:intergenic 30.0%
TGTTGTAACATAATAGATGC+TGG - chr4_1:27652202-27652221 Msa0542560:CDS 30.0%
AAAAATGTAACCCAACCATA+AGG + chr4_1:27652310-27652329 None:intergenic 30.0%
TCAACAAGATAGTTGACAAA+AGG + chr4_1:27652391-27652410 None:intergenic 30.0%
!! ATGTGATGATGGTACGTAAA+AGG + chr4_1:27644829-27644848 None:intergenic 35.0%
TTGGGATCCAAATTCTTCAA+TGG - chr4_1:27644946-27644965 Msa0542560:three_prime_UTR 35.0%
GTAGAAATCGTCATCTTCAA+GGG + chr4_1:27645011-27645030 None:intergenic 35.0%
TGTAGAAATCGTCATCTTCA+AGG + chr4_1:27645012-27645031 None:intergenic 35.0%
! AGTGATTATGATGATGATGC+TGG - chr4_1:27645067-27645086 Msa0542560:three_prime_UTR 35.0%
ATTTAGTGATTAGTGGTGGT+TGG - chr4_1:27645573-27645592 Msa0542560:CDS 35.0%
!!! CTGTTTTTTTTTGTAGGTGG+TGG - chr4_1:27645664-27645683 Msa0542560:intron 35.0%
CTAATCAGTTACACGGAAAT+CGG + chr4_1:27645830-27645849 None:intergenic 35.0%
! TTCCGTGTAACTGATTAGTT+TGG - chr4_1:27645832-27645851 Msa0542560:CDS 35.0%
!! GTGTAACTGATTAGTTTGGT+TGG - chr4_1:27645836-27645855 Msa0542560:CDS 35.0%
ATCTGATATCCAAGTAAGAC+AGG - chr4_1:27645889-27645908 Msa0542560:intron 35.0%
!!! TTGATTTTTTCTCCTGCTGT+GGG - chr4_1:27646654-27646673 Msa0542560:intron 35.0%
!! TTTGGTATTTGTTTCTGCTG+TGG - chr4_1:27646699-27646718 Msa0542560:intron 35.0%
TTAACAAAAGAAGAGGGGAA+TGG + chr4_1:27646834-27646853 None:intergenic 35.0%
GGGTGATAGAATATGCAATT+TGG - chr4_1:27646905-27646924 Msa0542560:intron 35.0%
ATAAGATCTACGAAGGTAAC+GGG + chr4_1:27647209-27647228 None:intergenic 35.0%
CTTCGATATAAGATCTACGA+AGG + chr4_1:27647216-27647235 None:intergenic 35.0%
TAGTCTACATGGATTCGAAT+TGG + chr4_1:27647282-27647301 None:intergenic 35.0%
!! TTACTAGTTTAGCTTTAGCC+AGG + chr4_1:27647385-27647404 None:intergenic 35.0%
TAACTGCATATTCACAACCA+GGG + chr4_1:27647569-27647588 None:intergenic 35.0%
!!! TATGCAGTTACTTTTGATGC+TGG - chr4_1:27647579-27647598 Msa0542560:intron 35.0%
AACAAAAGCTATACGAACAG+AGG + chr4_1:27647629-27647648 None:intergenic 35.0%
! TCTGTTCGTATAGCTTTTGT+TGG - chr4_1:27647628-27647647 Msa0542560:intron 35.0%
AGTAGAAAGAGAGAGTAATG+TGG - chr4_1:27647877-27647896 Msa0542560:intron 35.0%
!! CCATGGATTATTAGTTTGTC+TGG + chr4_1:27648107-27648126 None:intergenic 35.0%
CCAGACAAACTAATAATCCA+TGG - chr4_1:27648104-27648123 Msa0542560:intron 35.0%
ATTAGGATTCTACATTCGCT+TGG - chr4_1:27648132-27648151 Msa0542560:intron 35.0%
CGACCAATCGAAAAAAATCA+AGG - chr4_1:27648310-27648329 Msa0542560:intron 35.0%
GCATTCTATGTTCTTGGATA+AGG - chr4_1:27648437-27648456 Msa0542560:CDS 35.0%
GCTCAATCAGTTTGAAAACA+TGG + chr4_1:27648682-27648701 None:intergenic 35.0%
TATCTACATAGGTTATGCCT+TGG - chr4_1:27648723-27648742 Msa0542560:intron 35.0%
!! CTTTTCTTGATTCAGGTTTC+TGG - chr4_1:27648848-27648867 Msa0542560:CDS 35.0%
TACTGAAAGAAGAAGGGAAA+TGG - chr4_1:27648924-27648943 Msa0542560:intron 35.0%
GATACACCCATTATTATGAG+CGG - chr4_1:27648965-27648984 Msa0542560:intron 35.0%
! GTTAGGTGAAAGTACATCTA+TGG + chr4_1:27649237-27649256 None:intergenic 35.0%
!! TCAAATAAGAAGTGTCTTGC+AGG + chr4_1:27649312-27649331 None:intergenic 35.0%
! TGTCACTTCAGGTTTATCAA+AGG + chr4_1:27649371-27649390 None:intergenic 35.0%
! AAAAAGAACTCTGTCACTTC+AGG + chr4_1:27649382-27649401 None:intergenic 35.0%
TTGTATACTTCTCCTCCTAA+TGG - chr4_1:27649425-27649444 Msa0542560:CDS 35.0%
GAGAGACCAAAGAAAACTAT+AGG + chr4_1:27649456-27649475 None:intergenic 35.0%
! GGTACCTTATCTTTTAGTCT+TGG + chr4_1:27649720-27649739 None:intergenic 35.0%
!! GCTAAGAAAGGTGTTATGAT+TGG + chr4_1:27649837-27649856 None:intergenic 35.0%
! TAATGATGGAGTGCTAAGAA+AGG + chr4_1:27649849-27649868 None:intergenic 35.0%
ACATGGAATGGAAAGTTAAC+CGG - chr4_1:27650475-27650494 Msa0542560:intron 35.0%
! AAAAATGTTTCGCCTTGTTC+AGG - chr4_1:27650900-27650919 Msa0542560:intron 35.0%
AAATGGCATATTCCTGAACA+AGG + chr4_1:27650915-27650934 None:intergenic 35.0%
AGTGAAAGATGAGGATTAAC+TGG + chr4_1:27651040-27651059 None:intergenic 35.0%
AATCCTCATCTTTCACTTTC+TGG - chr4_1:27651043-27651062 Msa0542560:intron 35.0%
ATAAACTTAAGCTGTGACTC+AGG + chr4_1:27651102-27651121 None:intergenic 35.0%
ACAGCTTAAGTTTATTACGG+AGG - chr4_1:27651107-27651126 Msa0542560:intron 35.0%
TGAAATGGACGTATGCATAT+GGG - chr4_1:27651361-27651380 Msa0542560:intron 35.0%
TACTATTTACCTGAGCATGA+GGG - chr4_1:27651384-27651403 Msa0542560:intron 35.0%
CAGTTCTTTGAGTATTTGCA+AGG - chr4_1:27651417-27651436 Msa0542560:intron 35.0%
GACTTTCGTACAAAATTAGC+TGG - chr4_1:27651621-27651640 Msa0542560:intron 35.0%
CAAAATTAGCTGGATTGACT+AGG - chr4_1:27651631-27651650 Msa0542560:intron 35.0%
ACTACTTCGAGAATTTAGTG+AGG - chr4_1:27651754-27651773 Msa0542560:intron 35.0%
CTACTTCGAGAATTTAGTGA+GGG - chr4_1:27651755-27651774 Msa0542560:intron 35.0%
CTATCTGATGTAGATGCTAA+TGG - chr4_1:27651792-27651811 Msa0542560:intron 35.0%
ATCTGATGTAGATGCTAATG+GGG - chr4_1:27651794-27651813 Msa0542560:intron 35.0%
AATCAACGTCGATGAAAATG+TGG - chr4_1:27651987-27652006 Msa0542560:intron 35.0%
ATCAACGTCGATGAAAATGT+GGG - chr4_1:27651988-27652007 Msa0542560:intron 35.0%
! TCCGTTAGAAACACTTGTTA+AGG - chr4_1:27652014-27652033 Msa0542560:intron 35.0%
TCTTCATCGTCTTCACATAT+TGG + chr4_1:27652095-27652114 None:intergenic 35.0%
AACAAATTCAGCTGAGTGAT+AGG + chr4_1:27652149-27652168 None:intergenic 35.0%
! ATCTAGGGCTTGAGAAATTG+AGG + chr4_1:27644919-27644938 None:intergenic 40.0%
AAGCCCTAGATTCTCGATTT+GGG - chr4_1:27644928-27644947 Msa0542560:three_prime_UTR 40.0%
GATCCCAAATCGAGAATCTA+GGG + chr4_1:27644934-27644953 None:intergenic 40.0%
TCGGAGTCCATTGAAGAATT+TGG + chr4_1:27644956-27644975 None:intergenic 40.0%
AGCATCGTGCATATCATCTT+CGG + chr4_1:27644975-27644994 None:intergenic 40.0%
GAAGATGACGATTTCTACAG+TGG - chr4_1:27645013-27645032 Msa0542560:three_prime_UTR 40.0%
CGATTTCTACAGTGGTGATA+CGG - chr4_1:27645021-27645040 Msa0542560:three_prime_UTR 40.0%
TGTCATCTTCCTGTCTTACT+TGG + chr4_1:27645901-27645920 None:intergenic 40.0%
TACTACTTCGTCACCACAAT+TGG - chr4_1:27645969-27645988 Msa0542560:intron 40.0%
TGAGAGATGCTTTGTGTTGT+AGG - chr4_1:27646482-27646501 Msa0542560:intron 40.0%
TCAGTAAAGTGCATGATGCA+TGG - chr4_1:27646509-27646528 Msa0542560:intron 40.0%
TATCTCACCTCGCTAGTATT+AGG + chr4_1:27646598-27646617 None:intergenic 40.0%
AATACTAGCGAGGTGAGATA+TGG - chr4_1:27646598-27646617 Msa0542560:intron 40.0%
!!! CTTGATTTTTTCTCCTGCTG+TGG - chr4_1:27646653-27646672 Msa0542560:intron 40.0%
TTTGAAAACTATCCTCGCTC+TGG - chr4_1:27646744-27646763 Msa0542560:intron 40.0%
TTGAAAACTATCCTCGCTCT+GGG - chr4_1:27646745-27646764 Msa0542560:intron 40.0%
! ATCCATACTGTTTCTCATGC+TGG - chr4_1:27646790-27646809 Msa0542560:intron 40.0%
! TCCATACTGTTTCTCATGCT+GGG - chr4_1:27646791-27646810 Msa0542560:intron 40.0%
!! TTTGTCCTTTTTGGCATGCT+AGG - chr4_1:27647052-27647071 Msa0542560:intron 40.0%
TGTATCCTAGCATGCCAAAA+AGG + chr4_1:27647060-27647079 None:intergenic 40.0%
CATCTCAACATCAAACATCC+AGG + chr4_1:27647106-27647125 None:intergenic 40.0%
AACTGCATATTCACAACCAG+GGG + chr4_1:27647568-27647587 None:intergenic 40.0%
GTAACTGCATATTCACAACC+AGG + chr4_1:27647570-27647589 None:intergenic 40.0%
TGTTGGAATGTAAGTTCTGC+TGG - chr4_1:27647645-27647664 Msa0542560:intron 40.0%
GATTCACAGTCACATTAGTC+AGG + chr4_1:27647723-27647742 None:intergenic 40.0%
CAGAGTCTGAAAACATGAAC+TGG - chr4_1:27647815-27647834 Msa0542560:intron 40.0%
TTGAAGTGGACCTTGGTTAA+AGG - chr4_1:27647992-27648011 Msa0542560:intron 40.0%
TGAAGTGGACCTTGGTTAAA+GGG - chr4_1:27647993-27648012 Msa0542560:intron 40.0%
TAGTCCAAACATAAAGGGCT+AGG + chr4_1:27648076-27648095 None:intergenic 40.0%
GAGTTTCTCTGCATTTCTGT+AGG - chr4_1:27648172-27648191 Msa0542560:intron 40.0%
TTATGAAGCAGCTAAGCAAG+AGG - chr4_1:27648797-27648816 Msa0542560:intron 40.0%
TATGAAGCAGCTAAGCAAGA+GGG - chr4_1:27648798-27648817 Msa0542560:intron 40.0%
GGAAATGGCGAAGAATTCAT+TGG - chr4_1:27648939-27648958 Msa0542560:intron 40.0%
! GATACATACAGATTGGTTGC+TGG + chr4_1:27648995-27649014 None:intergenic 40.0%
TTGTTCGGTAGTCATGTCTT+AGG - chr4_1:27649028-27649047 Msa0542560:intron 40.0%
TGTTCGGTAGTCATGTCTTA+GGG - chr4_1:27649029-27649048 Msa0542560:intron 40.0%
!! AATAAGAAGTGTCTTGCAGG+AGG + chr4_1:27649309-27649328 None:intergenic 40.0%
CAAAGGAATAACCAGTCAAG+AGG + chr4_1:27649354-27649373 None:intergenic 40.0%
AAACTATAGGCCAGACCATT+AGG + chr4_1:27649443-27649462 None:intergenic 40.0%
! GTCTGGCCTATAGTTTTCTT+TGG - chr4_1:27649447-27649466 Msa0542560:intron 40.0%
AAGCACCACTCAAGTTCAAA+AGG + chr4_1:27649608-27649627 None:intergenic 40.0%
TTTGTTTCAACCTCCCTATG+TGG - chr4_1:27649658-27649677 Msa0542560:intron 40.0%
! ACCTCCCTATGTGGATTATA+TGG - chr4_1:27649667-27649686 Msa0542560:intron 40.0%
ACCATATAATCCACATAGGG+AGG + chr4_1:27649671-27649690 None:intergenic 40.0%
CAGCTTCAACATTCCTCTAA+GGG + chr4_1:27650336-27650355 None:intergenic 40.0%
ACAGCTTCAACATTCCTCTA+AGG + chr4_1:27650337-27650356 None:intergenic 40.0%
AGAGGAATGTTGAAGCTGTT+GGG - chr4_1:27650338-27650357 Msa0542560:intron 40.0%
! TTTTTCTCGTCTCACAGTCA+AGG - chr4_1:27650693-27650712 Msa0542560:intron 40.0%
CATCAACGACAGATTATGCA+AGG + chr4_1:27650996-27651015 None:intergenic 40.0%
AATCTGTCGTTGATGCTTCT+AGG - chr4_1:27651001-27651020 Msa0542560:intron 40.0%
ATCTGTCGTTGATGCTTCTA+GGG - chr4_1:27651002-27651021 Msa0542560:intron 40.0%
TTAAGTTTATTACGGAGGCC+TGG - chr4_1:27651112-27651131 Msa0542560:intron 40.0%
TCTTCCAGATAGTTGAGTGT+AGG - chr4_1:27651331-27651350 Msa0542560:intron 40.0%
CTGAAATGGACGTATGCATA+TGG - chr4_1:27651360-27651379 Msa0542560:intron 40.0%
GTACTATTTACCTGAGCATG+AGG - chr4_1:27651383-27651402 Msa0542560:intron 40.0%
!!! TTTTCAGGTGAAGCAGAATC+TGG - chr4_1:27651519-27651538 Msa0542560:intron 40.0%
!! TTAGTGAGGGCTTTAGAGAA+TGG - chr4_1:27651768-27651787 Msa0542560:intron 40.0%
GAACTTCTGATGATAGTCAC+TGG - chr4_1:27651907-27651926 Msa0542560:intron 40.0%
TTGATTGCAAATCTGGCATG+TGG + chr4_1:27651973-27651992 None:intergenic 40.0%
! ATCGACGTTGATTGCAAATC+TGG + chr4_1:27651980-27651999 None:intergenic 40.0%
GGGTTCTTCTCATTATATGC+TGG - chr4_1:27652067-27652086 Msa0542560:intron 40.0%
AATTCAGCTGAGTGATAGGA+GGG + chr4_1:27652145-27652164 None:intergenic 40.0%
AAATTCAGCTGAGTGATAGG+AGG + chr4_1:27652146-27652165 None:intergenic 40.0%
CAAGCCCTAGATTCTCGATT+TGG - chr4_1:27644927-27644946 Msa0542560:three_prime_UTR 45.0%
GGATCCCAAATCGAGAATCT+AGG + chr4_1:27644935-27644954 None:intergenic 45.0%
TATGCACGATGCTCACGATA+TGG - chr4_1:27644982-27645001 Msa0542560:three_prime_UTR 45.0%
TACAGTGGTGATACGGAAGA+AGG - chr4_1:27645028-27645047 Msa0542560:three_prime_UTR 45.0%
TGATTAGTGGTGGTTGGATG+AGG - chr4_1:27645579-27645598 Msa0542560:CDS 45.0%
GTATTAGGATGCTGGACAAC+TGG + chr4_1:27646583-27646602 None:intergenic 45.0%
TAGCGAGGTGAGATATGGAT+GGG - chr4_1:27646603-27646622 Msa0542560:intron 45.0%
AACAGATGCCACATGTAAGC+TGG + chr4_1:27646725-27646744 None:intergenic 45.0%
TCCCAGCATGAGAAACAGTA+TGG + chr4_1:27646795-27646814 None:intergenic 45.0%
! TACTGTTTCTCATGCTGGGA+AGG - chr4_1:27646795-27646814 Msa0542560:intron 45.0%
ATCAGCACGTCCATCAATGA+TGG - chr4_1:27647079-27647098 Msa0542560:intron 45.0%
ACATCCAGGACCATCATTGA+TGG + chr4_1:27647092-27647111 None:intergenic 45.0%
CTACATGGATTCGAATTGGC+AGG + chr4_1:27647278-27647297 None:intergenic 45.0%
!!! GCAGTTACTTTTGATGCTGG+AGG - chr4_1:27647582-27647601 Msa0542560:intron 45.0%
!!! GTTACTTTTGATGCTGGAGG+TGG - chr4_1:27647585-27647604 Msa0542560:intron 45.0%
!! GCTTAAGTTGAAGTGGACCT+TGG - chr4_1:27647985-27648004 Msa0542560:intron 45.0%
GAAGTGGACCTTGGTTAAAG+GGG - chr4_1:27647994-27648013 Msa0542560:intron 45.0%
GATGCCTAGCCCTTTATGTT+TGG - chr4_1:27648069-27648088 Msa0542560:intron 45.0%
! TCGATTGGTCGCTTGCATTT+GGG + chr4_1:27648301-27648320 None:intergenic 45.0%
! TTCGATTGGTCGCTTGCATT+TGG + chr4_1:27648302-27648321 None:intergenic 45.0%
! ATAGGTTATGCCTTGGTGCA+TGG - chr4_1:27648730-27648749 Msa0542560:intron 45.0%
TCAGACCATGGTGAAAGAAC+TGG - chr4_1:27648753-27648772 Msa0542560:intron 45.0%
AACCACCAGTTCTTTCACCA+TGG + chr4_1:27648761-27648780 None:intergenic 45.0%
ACACCCATTATTATGAGCGG+TGG - chr4_1:27648968-27648987 Msa0542560:intron 45.0%
CACCCATTATTATGAGCGGT+GGG - chr4_1:27648969-27648988 Msa0542560:intron 45.0%
TACTTCTCCTCCTAATGGTC+TGG - chr4_1:27649430-27649449 Msa0542560:CDS 45.0%
TGGTCTCTCTTAAAAGGTCC+AGG - chr4_1:27649467-27649486 Msa0542560:intron 45.0%
GGTCTCTCTTAAAAGGTCCA+GGG - chr4_1:27649468-27649487 Msa0542560:intron 45.0%
! ATAAGGTACCCCAAGTCTCT+TGG - chr4_1:27649730-27649749 Msa0542560:intron 45.0%
! TAAGGTACCCCAAGTCTCTT+GGG - chr4_1:27649731-27649750 Msa0542560:intron 45.0%
ATCTGTTCTGTGTCATCCTG+TGG - chr4_1:27650236-27650255 Msa0542560:intron 45.0%
! CAACATTCCTCTAAGGGAGT+TGG + chr4_1:27650330-27650349 None:intergenic 45.0%
CAGCTTCAACATTCCTCTGA+GGG + chr4_1:27650361-27650380 None:intergenic 45.0%
ACAGCTTCAACATTCCTCTG+AGG + chr4_1:27650362-27650381 None:intergenic 45.0%
CAGAGGAATGTTGAAGCTGT+TGG - chr4_1:27650362-27650381 Msa0542560:intron 45.0%
CTGCCAGAAAGTGAAAGATG+AGG + chr4_1:27651049-27651068 None:intergenic 45.0%
ACTTAAGCTGTGACTCAGGT+TGG + chr4_1:27651098-27651117 None:intergenic 45.0%
CAAATCATTTACCTGCAGCC+AGG + chr4_1:27651133-27651152 None:intergenic 45.0%
CTCTCCTACACTCAACTATC+TGG + chr4_1:27651338-27651357 None:intergenic 45.0%
!! AGTGTAGGAGAGTGCTGAAA+TGG - chr4_1:27651346-27651365 Msa0542560:intron 45.0%
!!! TTTTTTGCACCCTCATGCTC+AGG + chr4_1:27651396-27651415 None:intergenic 45.0%
ACGAGCTCAAAAAATGCTGC+AGG - chr4_1:27651834-27651853 Msa0542560:intron 45.0%
CGAGCTCAAAAAATGCTGCA+GGG - chr4_1:27651835-27651854 Msa0542560:intron 45.0%
GGCAGATTTGACATTCACAG+AGG + chr4_1:27651949-27651968 None:intergenic 45.0%
ATTGCAAATCTGGCATGTGG+TGG + chr4_1:27651970-27651989 None:intergenic 45.0%
! GAAACACTTGTTAAGGTGCG+TGG - chr4_1:27652021-27652040 Msa0542560:intron 45.0%
AAGAACCCAATCTCAGCCTT+TGG + chr4_1:27652055-27652074 None:intergenic 45.0%
!!! CATTTTTATTTTATTTTTTT+TGG - chr4_1:27644846-27644865 Msa0542560:three_prime_UTR 5.0%
!! TTAAAAATATTACAAATAAT+TGG - chr4_1:27650211-27650230 Msa0542560:intron 5.0%
!! ATAAAATAAAATACAAAAAA+AGG + chr4_1:27652254-27652273 None:intergenic 5.0%
! TGATACGGAAGAAGGTGCGA+TGG - chr4_1:27645036-27645055 Msa0542560:three_prime_UTR 50.0%
TGAAGAGCGAGTCCGAAAAG+CGG - chr4_1:27646540-27646559 Msa0542560:intron 50.0%
!! CCAACAAGCCAACCGCTTTT+CGG + chr4_1:27646555-27646574 None:intergenic 50.0%
CCTCGCTAGTATTAGGATGC+TGG + chr4_1:27646591-27646610 None:intergenic 50.0%
CCAGCATCCTAATACTAGCG+AGG - chr4_1:27646588-27646607 Msa0542560:intron 50.0%
CTAGCGAGGTGAGATATGGA+TGG - chr4_1:27646602-27646621 Msa0542560:intron 50.0%
GAGAATATAGCTCCCACAGC+AGG + chr4_1:27646669-27646688 None:intergenic 50.0%
!! AACTATCCTCGCTCTGGGAT+TGG - chr4_1:27646750-27646769 Msa0542560:intron 50.0%
GGGATTGGAATGGCTTCTTG+TGG - chr4_1:27646765-27646784 Msa0542560:intron 50.0%
ACGTCCATCAATGATGGTCC+TGG - chr4_1:27647085-27647104 Msa0542560:intron 50.0%
AGATGTCCTGAACCCACTTG+TGG - chr4_1:27647121-27647140 Msa0542560:intron 50.0%
TGTGAATCTACAGTGCACCG+AGG - chr4_1:27647735-27647754 Msa0542560:intron 50.0%
ACTGTGGCACTGTGGTAAAG+TGG - chr4_1:27647776-27647795 Msa0542560:intron 50.0%
GACTCACACCCCTTTAACCA+AGG + chr4_1:27648005-27648024 None:intergenic 50.0%
GACCATGGTGAAAGAACTGG+TGG - chr4_1:27648756-27648775 Msa0542560:intron 50.0%
AAGCAAGAGGGAGTGGTAAG+AGG - chr4_1:27648810-27648829 Msa0542560:intron 50.0%
GGCCCACCGCTCATAATAAT+GGG + chr4_1:27648974-27648993 None:intergenic 50.0%
TGGCCCACCGCTCATAATAA+TGG + chr4_1:27648975-27648994 None:intergenic 50.0%
!! TCTTGCAGGAGGAGCATTGT+TGG + chr4_1:27649298-27649317 None:intergenic 50.0%
!! CCAGTCAAGAGGAGTACTCT+TGG + chr4_1:27649343-27649362 None:intergenic 50.0%
!! CCAAGAGTACTCCTCTTGAC+TGG - chr4_1:27649340-27649359 Msa0542560:intron 50.0%
CTATAGGCCAGACCATTAGG+AGG + chr4_1:27649440-27649459 None:intergenic 50.0%
! AAGGTCCAGGGTTCAAGTTC+TGG - chr4_1:27649480-27649499 Msa0542560:intron 50.0%
TCAAGGACCAACTCCCTTAG+AGG - chr4_1:27650320-27650339 Msa0542560:intron 50.0%
TGTTGAAGCTGTTCCCTCAG+AGG - chr4_1:27650345-27650364 Msa0542560:intron 50.0%
GTTGAAGCTGTTGGGTGAGT+TGG - chr4_1:27650371-27650390 Msa0542560:intron 50.0%
TTAAAAGGCCGGGAGAGAGA+TGG + chr4_1:27650780-27650799 None:intergenic 50.0%
AGGTGAAGCAGAATCTGGTC+TGG - chr4_1:27651524-27651543 Msa0542560:intron 50.0%
! CAGCAATTCCTCAGTGCTGA+AGG - chr4_1:27651579-27651598 Msa0542560:intron 50.0%
!! TAGATTGGCCTTCAGCACTG+AGG + chr4_1:27651590-27651609 None:intergenic 50.0%
! TGAGCTCGTTGCTTTGCTGA+AGG + chr4_1:27651823-27651842 None:intergenic 50.0%
AAATGCTGCAGGGAGCAGTA+AGG - chr4_1:27651845-27651864 Msa0542560:intron 50.0%
AATGCTGCAGGGAGCAGTAA+GGG - chr4_1:27651846-27651865 Msa0542560:intron 50.0%
! AATCTCAGCCTTTGGTGCAG+TGG + chr4_1:27652047-27652066 None:intergenic 50.0%
ACTGCACCAAAGGCTGAGAT+TGG - chr4_1:27652046-27652065 Msa0542560:intron 50.0%
CTGCACCAAAGGCTGAGATT+GGG - chr4_1:27652047-27652066 Msa0542560:intron 50.0%
GATTGAGTCTCGTCGACCTG+AGG - chr4_1:27645114-27645133 Msa0542560:three_prime_UTR 55.0%
!! CCGAAAAGCGGTTGGCTTGT+TGG - chr4_1:27646552-27646571 Msa0542560:intron 55.0%
TGCTGTGGCCAGCTTACATG+TGG - chr4_1:27646714-27646733 Msa0542560:intron 55.0%
!! TCCTCGCTCTGGGATTGGAA+TGG - chr4_1:27646755-27646774 Msa0542560:intron 55.0%
CCAATAGCAGCGCCACAAGT+GGG + chr4_1:27647136-27647155 None:intergenic 55.0%
ACCAATAGCAGCGCCACAAG+TGG + chr4_1:27647137-27647156 None:intergenic 55.0%
GCATATTCACAACCAGGGGC+AGG + chr4_1:27647564-27647583 None:intergenic 55.0%
GAATCTACAGTGCACCGAGG+AGG - chr4_1:27647738-27647757 Msa0542560:intron 55.0%
! GGTCGCTTGCATTTGGGACA+TGG + chr4_1:27648295-27648314 None:intergenic 55.0%
CATGGTCTGACCATGCACCA+AGG + chr4_1:27648743-27648762 None:intergenic 55.0%
! CTTGGTGCATGGTCAGACCA+TGG - chr4_1:27648741-27648760 Msa0542560:intron 55.0%
AGCAGCTAAGCAAGAGGGAG+TGG - chr4_1:27648803-27648822 Msa0542560:intron 55.0%
CCTTGCCAGAACTTGAACCC+TGG + chr4_1:27649488-27649507 None:intergenic 55.0%
! CCAGGGTTCAAGTTCTGGCA+AGG - chr4_1:27649485-27649504 Msa0542560:intron 55.0%
AGGTGTGGCCCAAGAGACTT+GGG + chr4_1:27649742-27649761 None:intergenic 55.0%
GTACTCAGCCATCTCTCTCC+CGG - chr4_1:27650769-27650788 Msa0542560:intron 55.0%
ATGCTGCAGGGAGCAGTAAG+GGG - chr4_1:27651847-27651866 Msa0542560:intron 55.0%
GAGCGAGTCCGAAAAGCGGT+TGG - chr4_1:27646544-27646563 Msa0542560:intron 60.0%
GCCATTCCAATCCCAGAGCG+AGG + chr4_1:27646759-27646778 None:intergenic 60.0%
CCCACTTGTGGCGCTGCTAT+TGG - chr4_1:27647133-27647152 Msa0542560:intron 60.0%
TCAAAGTGGTGTCCTGCCCC+TGG - chr4_1:27647549-27647568 Msa0542560:intron 60.0%
CACTGGACGATGAGCCTCCT+CGG + chr4_1:27647755-27647774 None:intergenic 60.0%
!! GCTCATCGTCCAGTGGACTG+TGG - chr4_1:27647760-27647779 Msa0542560:intron 60.0%
!! TCCAGTGGACTGTGGCACTG+TGG - chr4_1:27647768-27647787 Msa0542560:intron 60.0%
ACCACAGTGCCACAGTCCAC+TGG + chr4_1:27647772-27647791 None:intergenic 60.0%
GGTGTGGCCCAAGAGACTTG+GGG + chr4_1:27649741-27649760 None:intergenic 60.0%
GAGGTGTGGCCCAAGAGACT+TGG + chr4_1:27649743-27649762 None:intergenic 60.0%
TATTACGGAGGCCTGGCTGC+AGG - chr4_1:27651119-27651138 Msa0542560:intron 60.0%
GGAGCAGTAAGGGGAGAGCT+GGG - chr4_1:27651856-27651875 Msa0542560:intron 60.0%
AGTAAGGGGAGAGCTGGGAG+AGG - chr4_1:27651861-27651880 Msa0542560:intron 60.0%
GGGAGAGCTGGGAGAGGAAA+GGG - chr4_1:27651867-27651886 Msa0542560:intron 60.0%
! GCAGCGCCACAAGTGGGTTC+AGG + chr4_1:27647130-27647149 None:intergenic 65.0%
CGAGGAGGCTCATCGTCCAG+TGG - chr4_1:27647753-27647772 Msa0542560:intron 65.0%
GGGAGCAGTAAGGGGAGAGC+TGG - chr4_1:27651855-27651874 Msa0542560:intron 65.0%
GGGGAGAGCTGGGAGAGGAA+AGG - chr4_1:27651866-27651885 Msa0542560:intron 65.0%
GTGCGTGGCCACTGCACCAA+AGG - chr4_1:27652036-27652055 Msa0542560:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 27644788 27652417 27644788 ID=Msa0542560;Name=Msa0542560
chr4_1 mRNA 27644788 27652417 27644788 ID=Msa0542560-mRNA-1;Parent=Msa0542560;Name=Msa0542560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=177|1|1|1|0.92|1|15|416|584
chr4_1 exon 27644788 27645462 27644788 ID=Msa0542560-mRNA-1:exon:7506;Parent=Msa0542560-mRNA-1
chr4_1 exon 27645553 27645679 27645553 ID=Msa0542560-mRNA-1:exon:7505;Parent=Msa0542560-mRNA-1
chr4_1 exon 27645767 27645866 27645767 ID=Msa0542560-mRNA-1:exon:7504;Parent=Msa0542560-mRNA-1
chr4_1 exon 27646065 27646136 27646065 ID=Msa0542560-mRNA-1:exon:7503;Parent=Msa0542560-mRNA-1
chr4_1 exon 27646448 27646495 27646448 ID=Msa0542560-mRNA-1:exon:7502;Parent=Msa0542560-mRNA-1
chr4_1 exon 27648200 27648289 27648200 ID=Msa0542560-mRNA-1:exon:7501;Parent=Msa0542560-mRNA-1
chr4_1 exon 27648381 27648471 27648381 ID=Msa0542560-mRNA-1:exon:7500;Parent=Msa0542560-mRNA-1
chr4_1 exon 27648825 27648932 27648825 ID=Msa0542560-mRNA-1:exon:7499;Parent=Msa0542560-mRNA-1
chr4_1 exon 27649369 27649457 27649369 ID=Msa0542560-mRNA-1:exon:7498;Parent=Msa0542560-mRNA-1
chr4_1 exon 27649552 27649656 27649552 ID=Msa0542560-mRNA-1:exon:7497;Parent=Msa0542560-mRNA-1
chr4_1 exon 27649959 27650131 27649959 ID=Msa0542560-mRNA-1:exon:7496;Parent=Msa0542560-mRNA-1
chr4_1 exon 27650389 27650479 27650389 ID=Msa0542560-mRNA-1:exon:7495;Parent=Msa0542560-mRNA-1
chr4_1 exon 27650596 27650701 27650596 ID=Msa0542560-mRNA-1:exon:7494;Parent=Msa0542560-mRNA-1
chr4_1 exon 27651215 27651339 27651215 ID=Msa0542560-mRNA-1:exon:7493;Parent=Msa0542560-mRNA-1
chr4_1 exon 27652070 27652417 27652070 ID=Msa0542560-mRNA-1:exon:7492;Parent=Msa0542560-mRNA-1
chr4_1 five_prime_UTR 27652241 27652417 27652241 ID=Msa0542560-mRNA-1:five_prime_utr;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27652070 27652240 27652070 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27651215 27651339 27651215 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27650596 27650701 27650596 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27650389 27650479 27650389 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27649959 27650131 27649959 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27649552 27649656 27649552 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27649369 27649457 27649369 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27648825 27648932 27648825 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27648381 27648471 27648381 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27648200 27648289 27648200 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27646448 27646495 27646448 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27646065 27646136 27646065 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27645767 27645866 27645767 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27645553 27645679 27645553 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 CDS 27645204 27645462 27645204 ID=Msa0542560-mRNA-1:cds;Parent=Msa0542560-mRNA-1
chr4_1 three_prime_UTR 27644788 27645203 27644788 ID=Msa0542560-mRNA-1:three_prime_utr;Parent=Msa0542560-mRNA-1
Gene Sequence

>Msa0542560

ATGGACTCCGAAGATGATATGCACGATGCTCACGATATGGAGTCCCTTGAAGATGACGATTTCTACAGTGGTGATACGGAAGAAGGTGCGATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACCATATTGAAGGAATCTGATATCCAAGTAAGACAGGAAGATGACATTGATACAGTTGCAGCTGTTCTTTCTGTATCAAAAGTTGCTGCAAGCATACTACTTCGTCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTCCGAAAAGCGGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATACTAGCGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGCTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATACATCAGCACGTCCATCAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGCGCTGCTATTGGTCAAGATATGATTGATTCATTAGCATGTAATGAAGATAAAGAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAATGCAAGCGACCAATCGAAAAAAATCAAGGATGCATGCACATCACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAGAGATACACCCATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGAACAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAGCATGAGGGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAAGAGCTACAGCAATTCCTCAGTGCTGAAGGCCAATCTAAAGAATTCAATGACTTTCGTACAAAATTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCTGATGTAGATGCTAATGGGGCTTCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGTAAGGGGAGAGCTGGGAGAGGAAAGGGAGCTTTGCGATCAAACAGAACTTCTGATGATAGTCACTGGAGCTGCGAACATTGTACCTCTGTGAATGTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA

Protein sequence

>Msa0542560

MDSEDDMHDAHDMESLEDDDFYSGDTEEGAMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIQVRQEDDIDTVAAVLSVSKVAASILLRHHNWSVSKVHDAWFADEERVRKAVGLLEKPVVQHPNTSELTCGICFENYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDSLACNEDKEKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLEQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEGAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSAEGQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGASFSKATSSKNAAGSSKGRAGRGKGALRSNRTSDDSHWSCEHCTSVNVKSATTCQICNQRR*