AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0482040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482040 MtrunA17_Chr4g0058841 91.919 198 1 1 1 198 1 183 3.42e-129 366
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0482040 AT5G58060.1 81.313 198 22 1 1 198 1 183 1.54e-112 324
Msa0482040 AT5G58060.2 71.818 220 25 2 1 198 1 205 3.75e-103 301
Msa0482040 AT5G58180.1 70.000 200 41 3 1 198 1 183 1.41e-90 268
Msa0482040 AT5G58180.2 70.000 200 41 3 1 198 1 183 1.41e-90 268

Find 88 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTCGCTGCCTCGCTTTA+TGG 0.157606 3_3:-88471765 None:intergenic
CAATACAAATTAACTTAAAA+TGG 0.160460 3_3:-88478014 None:intergenic
ACTTTGTGCAGTGGGATTTA+TGG 0.204222 3_3:+88472609 Msa0482040:CDS
CCTCTACACAAATCTGTTAA+AGG 0.222201 3_3:+88477261 Msa0482040:CDS
TCTGTTAAAGGAAGGAATTT+TGG 0.255483 3_3:+88477273 Msa0482040:CDS
CGTGAGAGCTTCATTCAAAT+AGG 0.274319 3_3:-88474004 None:intergenic
GATGAATATATTAAAAGTTT+TGG 0.306961 3_3:+88473937 Msa0482040:CDS
TAAATGCCTCTGCATTATAT+TGG 0.315211 3_3:+88474041 Msa0482040:CDS
AGCATCTCAAACAAGGTTAA+AGG 0.324561 3_3:-88477942 None:intergenic
TGTCACCAACATTGATTATC+AGG 0.343112 3_3:+88476405 Msa0482040:CDS
CCCGTCTGCAATACATATAT+CGG 0.345240 3_3:-88477871 None:intergenic
AGGTGGTATTGATAGGTTTC+TGG 0.348265 3_3:-88476337 None:intergenic
GTGAGAGCTTCATTCAAATA+GGG 0.385021 3_3:-88474003 None:intergenic
TGAATCATGGAGAAGCATTC+AGG 0.395335 3_3:+88473960 Msa0482040:CDS
TTCAGGCAGGTGGTATTGAT+AGG 0.400183 3_3:-88476344 None:intergenic
AGCAACTTATCAGCCTCTGC+AGG 0.407447 3_3:-88474213 None:intergenic
TGCCAACATGGTAAGACCTT+TGG 0.408113 3_3:-88477907 None:intergenic
GAAATTTGTTACTGTGTTTG+TGG 0.408611 3_3:+88477227 Msa0482040:CDS
TGAACAGATGTTCTACAAAC+AGG 0.421557 3_3:+88477679 Msa0482040:intron
TCTTGAAATGCAGTGCTTCA+AGG 0.424613 3_3:+88476372 Msa0482040:CDS
TATAATTATATGAGCTTACT+TGG 0.424674 3_3:+88478074 Msa0482040:three_prime_UTR
AACAATGAACTCTTTAACGC+TGG 0.424776 3_3:-88472087 None:intergenic
TGAAGCTCTCACGAAATTCC+AGG 0.438362 3_3:+88474014 Msa0482040:CDS
AGAGAAAACGCACTACGAAC+TGG 0.440582 3_3:-88472643 None:intergenic
AACATCATCAATGTCGGAAC+AGG 0.441783 3_3:-88477776 None:intergenic
GTGCATGCTTACAACAGAAA+TGG 0.441935 3_3:+88472586 Msa0482040:CDS
TTGTTTCGTCCAACTCCCTC+TGG 0.449194 3_3:-88474242 None:intergenic
CGTAGCTAATCGTACTCCTC+AGG 0.449938 3_3:+88472124 Msa0482040:CDS
ATGCAGTGCTTCAAGGGACT+TGG 0.461133 3_3:+88476379 Msa0482040:CDS
TGCAGAGGCATTTACATGCC+TGG 0.462408 3_3:-88474032 None:intergenic
TTCTGGAAAGTATTATTTCG+CGG 0.483291 3_3:-88471931 None:intergenic
CGCTGCCTCGCTTTATGGTG+AGG 0.486166 3_3:-88471760 None:intergenic
TATATGAGCTTACTTGGAAG+TGG 0.490116 3_3:+88478080 Msa0482040:three_prime_UTR
TCGTGCAAGCACACTATCAA+TGG 0.491767 3_3:-88475325 None:intergenic
TGATTTGAGTGCAGCATCGC+AGG 0.499499 3_3:+88475383 Msa0482040:CDS
CAATATTGTACAACACTGGT+TGG 0.502632 3_3:-88477711 None:intergenic
CGACATTGATGATGTTGGAT+GGG 0.502679 3_3:+88477783 Msa0482040:CDS
CCGACATTGATGATGTTGGA+TGG 0.504047 3_3:+88477782 Msa0482040:CDS
AATGAAGATCACGGCTCTGT+TGG 0.506379 3_3:+88471980 Msa0482040:exon
CTTGAAATGCAGTGCTTCAA+GGG 0.511855 3_3:+88476373 Msa0482040:CDS
CACCGGCGATGGTTCAGAAT+CGG 0.512387 3_3:+88472013 Msa0482040:CDS
GGGTTTCTGAGAGAAGGAAC+AGG 0.515754 3_3:+88477294 Msa0482040:CDS
CCGTCTGCAATACATATATC+GGG 0.521521 3_3:-88477870 None:intergenic
GCTTGCACGAGGAGAGAAGC+TGG 0.527117 3_3:+88475338 Msa0482040:CDS
TAAGCTCATATAATTATAGC+AGG 0.532245 3_3:-88478069 None:intergenic
TGTTGTGATTCGCACGCAGT+CGG 0.534435 3_3:-88471891 None:intergenic
CCTTTAACAGATTTGTGTAG+AGG 0.540105 3_3:-88477261 None:intergenic
CCCGATATATGTATTGCAGA+CGG 0.540848 3_3:+88477870 Msa0482040:three_prime_UTR
TAAAGCGAGGCAGCGAGCAT+TGG 0.541385 3_3:+88471768 Msa0482040:five_prime_UTR
AGAAATGGACTTTGTGCAGT+GGG 0.544952 3_3:+88472601 Msa0482040:CDS
TGATGCGGAAGCGTGTGTGC+TGG 0.555637 3_3:-88471815 None:intergenic
CAGAAATGGACTTTGTGCAG+TGG 0.556323 3_3:+88472600 Msa0482040:CDS
AGAATGTTAATTTGCCAACA+TGG 0.557639 3_3:-88477919 None:intergenic
GCTGCCTCGCTTTATGGTGA+GGG 0.557648 3_3:-88471759 None:intergenic
AGCCAAAGGTCTTACCATGT+TGG 0.563738 3_3:+88477905 Msa0482040:three_prime_UTR
TGTTCCGACATTGATGATGT+TGG 0.564286 3_3:+88477778 Msa0482040:CDS
GCTGAAAATCCAGAGGGAGT+TGG 0.565538 3_3:+88474233 Msa0482040:CDS
CCGATATATGTATTGCAGAC+GGG 0.568136 3_3:+88477871 Msa0482040:three_prime_UTR
TACACAAATCTGTTAAAGGA+AGG 0.570658 3_3:+88477265 Msa0482040:CDS
GTGCTAAAATCCACCGGCGA+TGG 0.570937 3_3:+88472002 Msa0482040:CDS
GACATTGATGATGTTGGATG+GGG 0.577661 3_3:+88477784 Msa0482040:CDS
CATAGTAAGCATCTCAAACA+AGG 0.580832 3_3:-88477949 None:intergenic
GCTTCCGATGTGAGTCACTT+CGG 0.581854 3_3:+88472050 Msa0482040:CDS
CACCGATTCTGAACCATCGC+CGG 0.582685 3_3:-88472015 None:intergenic
GCTTCATTCAAATAGGGCCA+TGG 0.584327 3_3:-88473997 None:intergenic
CTTACAATATTGTACAACAC+TGG 0.593682 3_3:-88477715 None:intergenic
GTAGCTAATCGTACTCCTCA+GGG 0.612475 3_3:+88472125 Msa0482040:CDS
ACGAGCTCGCATAATACTGA+TGG 0.614389 3_3:-88477747 None:intergenic
CCATCCAACATCATCAATGT+CGG 0.615521 3_3:-88477782 None:intergenic
CGATTCTGAACCATCGCCGG+TGG 0.619269 3_3:-88472012 None:intergenic
AAATCTCCAGGACCCTGCAG+AGG 0.620458 3_3:+88474200 Msa0482040:intron
CTGAGGAGTACGATTAGCTA+CGG 0.622967 3_3:-88472123 None:intergenic
CGTCAATCTGTTCAGCACGA+AGG 0.627219 3_3:+88472152 Msa0482040:CDS
CTGTTGGTGCTAAAATCCAC+CGG 0.630376 3_3:+88471996 Msa0482040:CDS
GTGTTAAGGAAAGGACTGAA+TGG 0.630493 3_3:-88471861 None:intergenic
GCAACTTATCAGCCTCTGCA+GGG 0.635798 3_3:-88474212 None:intergenic
CTAAAGCCAATATAATGCAG+AGG 0.636268 3_3:-88474047 None:intergenic
AGCTACCTGATAATCAATGT+TGG 0.644611 3_3:-88476410 None:intergenic
ATTGATAGTGTGCTTGCACG+AGG 0.650465 3_3:+88475327 Msa0482040:CDS
ACAGATTGACGCTGACCCTG+AGG 0.664459 3_3:-88472140 None:intergenic
TAAGTTGCTGAAAATCCAGA+GGG 0.671975 3_3:+88474227 Msa0482040:CDS
GGGAACGAAATATTAGCCAA+AGG 0.680490 3_3:+88477891 Msa0482040:three_prime_UTR
ATAAGTTGCTGAAAATCCAG+AGG 0.687647 3_3:+88474226 Msa0482040:CDS
ACTACCCTCACCATAAAGCG+AGG 0.711857 3_3:+88471755 Msa0482040:five_prime_UTR
AGGCAGACAGTACTGAACCA+TGG 0.712623 3_3:+88473980 Msa0482040:CDS
ATATTTCAAAAGTTGACACG+AGG 0.723068 3_3:-88478118 None:intergenic
GTAACCGAAGTGACTCACAT+CGG 0.736012 3_3:-88472054 None:intergenic
GTGCTGGAAAGATGAAACTG+CGG 0.783321 3_3:-88471799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTAGTAATTTAATTTA+TGG + chr3_3:88473311-88473330 Msa0482040:intron 10.0%
!!! ATCATTGATTTTTTTTTTTT+TGG + chr3_3:88477495-88477514 Msa0482040:intron 10.0%
!! TAATAAACATTGTAATAGAA+AGG + chr3_3:88472364-88472383 Msa0482040:intron 15.0%
!!! TACTAATAAGACATTATTTT+AGG - chr3_3:88473301-88473320 None:intergenic 15.0%
!! AACAGTTAAAATCTAAAAAT+TGG - chr3_3:88473465-88473484 None:intergenic 15.0%
!!! AATTTTTAGATTTTAACTGT+TGG + chr3_3:88473464-88473483 Msa0482040:intron 15.0%
!!! ATTTTTAGATTTTAACTGTT+GGG + chr3_3:88473465-88473484 Msa0482040:intron 15.0%
!!! GATGAATATATTAAAAGTTT+TGG + chr3_3:88473937-88473956 Msa0482040:CDS 15.0%
!!! ATCTTGATTTAGTAATTTTA+TGG + chr3_3:88474698-88474717 Msa0482040:intron 15.0%
!! AACAAATTTCAATTTCTATA+CGG - chr3_3:88476577-88476596 None:intergenic 15.0%
!! TAATTATGAAAAATGCTATT+TGG + chr3_3:88476703-88476722 Msa0482040:intron 15.0%
!!! AATTATGAAAAATGCTATTT+GGG + chr3_3:88476704-88476723 Msa0482040:intron 15.0%
!!! TATGTTAATTAATTTTCATG+CGG - chr3_3:88477168-88477187 None:intergenic 15.0%
!!! ATTGATTTTTTTTTTTTTGG+TGG + chr3_3:88477498-88477517 Msa0482040:intron 15.0%
!! CAATACAAATTAACTTAAAA+TGG - chr3_3:88478017-88478036 None:intergenic 15.0%
!!! CATTTTAAGTTAATTTGTAT+TGG + chr3_3:88478015-88478034 Msa0482040:three_prime_UTR 15.0%
!!! TCATTTTTTTCTTCTTCTTT+CGG - chr3_3:88471965-88471984 None:intergenic 20.0%
!! TGATTCGCATAAATTTAATT+CGG - chr3_3:88472239-88472258 None:intergenic 20.0%
!!! AGGATTATTGATTTGATATA+TGG + chr3_3:88472384-88472403 Msa0482040:intron 20.0%
!!! TCATTTTCTTATAATACTAC+TGG - chr3_3:88472433-88472452 None:intergenic 20.0%
!!! TTTTTTATTTGTAGAGTACA+AGG + chr3_3:88472564-88472583 Msa0482040:intron 20.0%
!! TGTTGAAATATTTAATGATG+TGG - chr3_3:88473103-88473122 None:intergenic 20.0%
!!! TTTTTAGATTTTAACTGTTG+GGG + chr3_3:88473466-88473485 Msa0482040:intron 20.0%
!! TTAATCCAACATATTCATAT+TGG - chr3_3:88473532-88473551 None:intergenic 20.0%
!! AATTGTTTCAATGATTTCAT+TGG - chr3_3:88473563-88473582 None:intergenic 20.0%
!! AATGAAATCATTGAAACAAT+TGG + chr3_3:88473562-88473581 Msa0482040:intron 20.0%
!! AACCAATGATATATTACATA+CGG - chr3_3:88473671-88473690 None:intergenic 20.0%
!!! TATTTAATTGGTTTACTAGA+TGG + chr3_3:88473885-88473904 Msa0482040:intron 20.0%
!! TACTTAAGTTAACAATGATA+TGG + chr3_3:88474350-88474369 Msa0482040:intron 20.0%
!!! AATTTTGTTTGTTTGAGATT+CGG + chr3_3:88474393-88474412 Msa0482040:intron 20.0%
!! CTTATTAATGTACATATACT+TGG + chr3_3:88474607-88474626 Msa0482040:intron 20.0%
!! TAAAAAGAAACACAAACATA+TGG - chr3_3:88474633-88474652 None:intergenic 20.0%
!! TGGTCATATTATACATAATT+TGG + chr3_3:88474673-88474692 Msa0482040:intron 20.0%
!! TGGATTAATCAAGTAAAAAT+GGG - chr3_3:88474775-88474794 None:intergenic 20.0%
!!! ATTTTTACTTGATTAATCCA+GGG + chr3_3:88474775-88474794 Msa0482040:intron 20.0%
!! AATTTAGAAAAATGAAGGTA+CGG - chr3_3:88475116-88475135 None:intergenic 20.0%
!! TGACAAATTTAGAAAAATGA+AGG - chr3_3:88475121-88475140 None:intergenic 20.0%
!! AATGCAATGTTAATAAAAAC+TGG + chr3_3:88475945-88475964 Msa0482040:intron 20.0%
!!! TATTGGTAATAAATAGGAAA+GGG - chr3_3:88476313-88476332 None:intergenic 20.0%
!!! AGAAATTGAAATTTGTTATC+TGG + chr3_3:88476580-88476599 Msa0482040:intron 20.0%
!!! CTCTTTTTCAGTATTTATTT+CGG + chr3_3:88476676-88476695 Msa0482040:intron 20.0%
!! GTTAATTAGTTATGAATCAA+TGG - chr3_3:88477033-88477052 None:intergenic 20.0%
!!! TTTTTTTAATTGGAGTTTTG+GGG - chr3_3:88477062-88477081 None:intergenic 20.0%
!!! GTTTTTTTAATTGGAGTTTT+GGG - chr3_3:88477063-88477082 None:intergenic 20.0%
!!! TGTTTTTTTAATTGGAGTTT+TGG - chr3_3:88477064-88477083 None:intergenic 20.0%
!!! ATGTTAATTAATTTTCATGC+GGG - chr3_3:88477167-88477186 None:intergenic 20.0%
!! TGCATGAAAATATGAAAATA+AGG + chr3_3:88477200-88477219 Msa0482040:intron 20.0%
!! TGAAAATATGAAAATAAGGT+TGG + chr3_3:88477204-88477223 Msa0482040:intron 20.0%
!! GAAAATATGAAAATAAGGTT+GGG + chr3_3:88477205-88477224 Msa0482040:intron 20.0%
!!! AATTTCACAACGAAATTTTA+CGG - chr3_3:88477425-88477444 None:intergenic 20.0%
!! TTTATATTCAATACCATAGT+TGG + chr3_3:88477562-88477581 Msa0482040:intron 20.0%
!! TATAATTATATGAGCTTACT+TGG + chr3_3:88478074-88478093 Msa0482040:three_prime_UTR 20.0%
!!! ATTGAGAGTTTTATATGATG+CGG - chr3_3:88471833-88471852 None:intergenic 25.0%
! GAAGAAAAAAATGAAGATCA+CGG + chr3_3:88471971-88471990 Msa0482040:exon 25.0%
! TGGAAATTGAAGGAATAATA+TGG - chr3_3:88472189-88472208 None:intergenic 25.0%
!! TTGAATGTAATTACCTGTTT+TGG + chr3_3:88472456-88472475 Msa0482040:intron 25.0%
! CTCTACAAATAAAAAATGCA+AGG - chr3_3:88472560-88472579 None:intergenic 25.0%
! ACAAATCCATTCAAAATTGT+AGG - chr3_3:88472996-88473015 None:intergenic 25.0%
!! TTTTATACAATTTATGTCCC+TGG + chr3_3:88473163-88473182 Msa0482040:intron 25.0%
!!! ATTTTAGGATCTCAAATCTT+CGG - chr3_3:88473286-88473305 None:intergenic 25.0%
! TAGTACCAATATGAATATGT+TGG + chr3_3:88473524-88473543 Msa0482040:intron 25.0%
!! ATTGAAACAATTGGTTAGTT+TGG + chr3_3:88473571-88473590 Msa0482040:intron 25.0%
! GTATGTAATATATCATTGGT+TGG + chr3_3:88473670-88473689 Msa0482040:intron 25.0%
! GATCATGTTATCAAAATTGA+AGG - chr3_3:88473718-88473737 None:intergenic 25.0%
! TATTTGTCTTTATATGTCGA+AGG + chr3_3:88473763-88473782 Msa0482040:intron 25.0%
!!! TTAAAAGTTTTGGTGAATCA+TGG + chr3_3:88473947-88473966 Msa0482040:CDS 25.0%
!! TTTAGTAATTTTATGGTGCT+TGG + chr3_3:88474705-88474724 Msa0482040:intron 25.0%
!! TTAGTAATTTTATGGTGCTT+GGG + chr3_3:88474706-88474725 Msa0482040:intron 25.0%
! TAATCAAGTAAAAATGGGTA+CGG - chr3_3:88474770-88474789 None:intergenic 25.0%
! CTGGATTAATCAAGTAAAAA+TGG - chr3_3:88474776-88474795 None:intergenic 25.0%
!! CATTTTTACTTGATTAATCC+AGG + chr3_3:88474774-88474793 Msa0482040:intron 25.0%
!! ATTTAGAAAAATGAAGGTAC+GGG - chr3_3:88475115-88475134 None:intergenic 25.0%
!! TATAATGAATATTGCTGGTT+AGG + chr3_3:88475604-88475623 Msa0482040:intron 25.0%
! GTAATAATATATCACCTCTA+AGG + chr3_3:88475803-88475822 Msa0482040:intron 25.0%
!! CTATTGGTAATAAATAGGAA+AGG - chr3_3:88476314-88476333 None:intergenic 25.0%
! AAGAATTAAGATACACTGAA+GGG - chr3_3:88476474-88476493 None:intergenic 25.0%
!! ATTTTCACAACGAAATTTCA+CGG + chr3_3:88476733-88476752 Msa0482040:intron 25.0%
! TTTGTATCAAAACAATTGAG+CGG - chr3_3:88476876-88476895 None:intergenic 25.0%
!! TTTTGATACAAACCTCTTAT+TGG + chr3_3:88476884-88476903 Msa0482040:intron 25.0%
! AGAGAATTAATTCCAATAAG+AGG - chr3_3:88476899-88476918 None:intergenic 25.0%
!! ACTTTGTTTCTTCTAACTAT+CGG + chr3_3:88477002-88477021 Msa0482040:intron 25.0%
!! TTCTTTTTCCTGTTAAATTG+TGG - chr3_3:88477144-88477163 None:intergenic 25.0%
!!! AGGTTTGTTTTGTTTTGTTT+GGG + chr3_3:88477314-88477333 Msa0482040:intron 25.0%
! CAAAACAGAAATAGTTAAAG+AGG - chr3_3:88477467-88477486 None:intergenic 25.0%
!!! CTCTTTAACTATTTCTGTTT+TGG + chr3_3:88477465-88477484 Msa0482040:intron 25.0%
! TAAGCTCATATAATTATAGC+AGG - chr3_3:88478072-88478091 None:intergenic 25.0%
!! TTCTGGAAAGTATTATTTCG+CGG - chr3_3:88471934-88471953 None:intergenic 30.0%
! AAAGAGTTCATTGTTTTCGT+AGG + chr3_3:88472095-88472114 Msa0482040:CDS 30.0%
AAATGCAACCTAAAGGTAAA+AGG - chr3_3:88472783-88472802 None:intergenic 30.0%
GTCTTATAAATGCAACCTAA+AGG - chr3_3:88472790-88472809 None:intergenic 30.0%
! TTAGGTTGCATTTATAAGAC+TGG + chr3_3:88472790-88472809 Msa0482040:intron 30.0%
!!! ACAAATGTCCTTTTTTCAAG+TGG - chr3_3:88472871-88472890 None:intergenic 30.0%
! CTTTGTCCTACAATTTTGAA+TGG + chr3_3:88472987-88473006 Msa0482040:intron 30.0%
!!! CTTTGTTTTCCATTTAGTCA+TGG + chr3_3:88473353-88473372 Msa0482040:intron 30.0%
GACAATAATCCATGACTAAA+TGG - chr3_3:88473365-88473384 None:intergenic 30.0%
! TTAGTTTGGTAAGAATGACA+TGG + chr3_3:88473585-88473604 Msa0482040:intron 30.0%
TCAATAACACTGTGCTAATT+GGG - chr3_3:88473616-88473635 None:intergenic 30.0%
TGATATATTACATACGGACA+TGG - chr3_3:88473665-88473684 None:intergenic 30.0%
GTCCGTATGTAATATATCAT+TGG + chr3_3:88473666-88473685 Msa0482040:intron 30.0%
! AATATATCATTGGTTGGAGT+TGG + chr3_3:88473676-88473695 Msa0482040:intron 30.0%
CGACATATAAAGACAAATAG+AGG - chr3_3:88473762-88473781 None:intergenic 30.0%
CTTTAAATTCCCGTATGTTT+GGG + chr3_3:88473808-88473827 Msa0482040:intron 30.0%
! TCTGATGCATGCTATTTAAT+TGG + chr3_3:88473873-88473892 Msa0482040:intron 30.0%
AATAAAATATGATGTCCTGC+AGG + chr3_3:88473909-88473928 Msa0482040:intron 30.0%
TAAATGCCTCTGCATTATAT+TGG + chr3_3:88474041-88474060 Msa0482040:CDS 30.0%
GATTTGACAGGAACATAAAA+TGG - chr3_3:88474185-88474204 None:intergenic 30.0%
TTTAGAAGACAAAAGATGCA+GGG - chr3_3:88474328-88474347 None:intergenic 30.0%
ATTTAGAAGACAAAAGATGC+AGG - chr3_3:88474329-88474348 None:intergenic 30.0%
ATGTACTGTGTACATATACT+TGG + chr3_3:88474653-88474672 Msa0482040:intron 30.0%
! AAGCATGAGTACTTCTAAAA+TGG + chr3_3:88474740-88474759 Msa0482040:intron 30.0%
! CCATTGTTGTTGTAAAAACA+TGG - chr3_3:88475044-88475063 None:intergenic 30.0%
!! CCATGTTTTTACAACAACAA+TGG + chr3_3:88475041-88475060 Msa0482040:intron 30.0%
TAGTGTTTGTCAACATATGA+TGG + chr3_3:88475278-88475297 Msa0482040:intron 30.0%
! ATGTTTTATAACTTCGCCTA+TGG + chr3_3:88475421-88475440 Msa0482040:intron 30.0%
AATGTACACATATGCATTCA+CGG - chr3_3:88475460-88475479 None:intergenic 30.0%
! GTTTTCTGTTACTAAAGCTT+TGG + chr3_3:88475510-88475529 Msa0482040:intron 30.0%
GCATGTATAATGAATATTGC+TGG + chr3_3:88475599-88475618 Msa0482040:intron 30.0%
!! GCTTTTATTTAAGTGATCAC+AGG + chr3_3:88475638-88475657 Msa0482040:intron 30.0%
!!! TCATTTTTTGGCTTGTAACT+TGG - chr3_3:88476030-88476049 None:intergenic 30.0%
!!! ATGGTGTTCTTCTCATTTTT+TGG - chr3_3:88476042-88476061 None:intergenic 30.0%
AAAAGATAGATCCAAGTTAC+AGG + chr3_3:88476139-88476158 Msa0482040:intron 30.0%
AAAATTGGAGGGATAGTTAA+GGG - chr3_3:88476217-88476236 None:intergenic 30.0%
TTATCATGTACACGGAAAAT+TGG - chr3_3:88476232-88476251 None:intergenic 30.0%
ATGATAATTCCACTCCTAAA+AGG + chr3_3:88476245-88476264 Msa0482040:intron 30.0%
! GGAGTCTATTGGTAATAAAT+AGG - chr3_3:88476319-88476338 None:intergenic 30.0%
! TGCATTTCAAGATACTTTTC+AGG - chr3_3:88476364-88476383 None:intergenic 30.0%
AGAATTAAGATACACTGAAG+GGG - chr3_3:88476473-88476492 None:intergenic 30.0%
GAAGAATTAAGATACACTGA+AGG - chr3_3:88476475-88476494 None:intergenic 30.0%
!!! ATTGCCTTTTTGGTTATACA+AGG + chr3_3:88476614-88476633 Msa0482040:intron 30.0%
ACAACCTTGTATAACCAAAA+AGG - chr3_3:88476621-88476640 None:intergenic 30.0%
! ATGAAAAATGCTATTTGGGA+CGG + chr3_3:88476708-88476727 Msa0482040:intron 30.0%
ATTCGATACATGATTCACAA+AGG - chr3_3:88476969-88476988 None:intergenic 30.0%
AGAAGAAACAAAGTTATGTG+AGG - chr3_3:88476996-88477015 None:intergenic 30.0%
!!! CACAGCTCTGTTTTTTTAAT+TGG - chr3_3:88477072-88477091 None:intergenic 30.0%
! TTTTTCCTGTTAAATTGTGG+AGG - chr3_3:88477141-88477160 None:intergenic 30.0%
!! GAAATTTGTTACTGTGTTTG+TGG + chr3_3:88477227-88477246 Msa0482040:CDS 30.0%
TACACAAATCTGTTAAAGGA+AGG + chr3_3:88477265-88477284 Msa0482040:CDS 30.0%
! TCTGTTAAAGGAAGGAATTT+TGG + chr3_3:88477273-88477292 Msa0482040:CDS 30.0%
! CTGTTAAAGGAAGGAATTTT+GGG + chr3_3:88477274-88477293 Msa0482040:CDS 30.0%
!!! CAGGTTTGTTTTGTTTTGTT+TGG + chr3_3:88477313-88477332 Msa0482040:intron 30.0%
TCTTGAAATACAACCAACTA+TGG - chr3_3:88477578-88477597 None:intergenic 30.0%
! AGCTGACAGTAATATGATTT+TGG + chr3_3:88477652-88477671 Msa0482040:intron 30.0%
CTTACAATATTGTACAACAC+TGG - chr3_3:88477718-88477737 None:intergenic 30.0%
!! AGAATGTTAATTTGCCAACA+TGG - chr3_3:88477922-88477941 None:intergenic 30.0%
ATATTTCAAAAGTTGACACG+AGG - chr3_3:88478121-88478140 None:intergenic 30.0%
! GGTAGTATTTTACTTGCATC+TGG - chr3_3:88471741-88471760 None:intergenic 35.0%
! TTCTTTCGGTTTTCTCTTTC+TGG - chr3_3:88471951-88471970 None:intergenic 35.0%
AACAATGAACTCTTTAACGC+TGG - chr3_3:88472090-88472109 None:intergenic 35.0%
TCCTTCAATTTCCATATCTC+AGG + chr3_3:88472195-88472214 Msa0482040:intron 35.0%
CCTTCAATTTCCATATCTCA+GGG + chr3_3:88472196-88472215 Msa0482040:intron 35.0%
TAATTCGAAACCCTGAGATA+TGG - chr3_3:88472209-88472228 None:intergenic 35.0%
ATCTCAGGGTTTCGAATTAT+TGG + chr3_3:88472210-88472229 Msa0482040:intron 35.0%
!! TTGTTTTGCGTTGATCTATC+TGG + chr3_3:88472272-88472291 Msa0482040:intron 35.0%
!!! GTAATTACCTGTTTTGGTGT+CGG + chr3_3:88472462-88472481 Msa0482040:intron 35.0%
!!! TGCTGTTTCCTTTTACCTTT+AGG + chr3_3:88472772-88472791 Msa0482040:intron 35.0%
!!! CCTTTTTTCAAGTGGAACAT+GGG - chr3_3:88472863-88472882 None:intergenic 35.0%
!!! TCCTTTTTTCAAGTGGAACA+TGG - chr3_3:88472864-88472883 None:intergenic 35.0%
AAACATGAAATGCCTCTAAC+TGG - chr3_3:88473019-88473038 None:intergenic 35.0%
!! GTTAGAGGCATTTCATGTTT+AGG + chr3_3:88473019-88473038 Msa0482040:intron 35.0%
AAATACTCCGTAGTGAGATA+TGG + chr3_3:88473122-88473141 Msa0482040:intron 35.0%
! TCCAAGTCCAACATGATTTT+TGG + chr3_3:88473257-88473276 Msa0482040:intron 35.0%
TCCAAAAATCATGTTGGACT+TGG - chr3_3:88473261-88473280 None:intergenic 35.0%
TCGGTATCCAAAAATCATGT+TGG - chr3_3:88473267-88473286 None:intergenic 35.0%
GTCAATAACACTGTGCTAAT+TGG - chr3_3:88473617-88473636 None:intergenic 35.0%
TATATTACATACGGACATGG+TGG - chr3_3:88473662-88473681 None:intergenic 35.0%
AATAGAGGAAAGCAGATGTT+CGG - chr3_3:88473747-88473766 None:intergenic 35.0%
! GCTTTAAATTCCCGTATGTT+TGG + chr3_3:88473807-88473826 Msa0482040:intron 35.0%
TAGATGCCAGTTATATCAGA+TGG + chr3_3:88473844-88473863 Msa0482040:intron 35.0%
TGCATTCCATCTGATATAAC+TGG - chr3_3:88473853-88473872 None:intergenic 35.0%
GTGAGAGCTTCATTCAAATA+GGG - chr3_3:88474006-88474025 None:intergenic 35.0%
CTAAAGCCAATATAATGCAG+AGG - chr3_3:88474050-88474069 None:intergenic 35.0%
GTGAAAAGTCATCATGTGAA+AGG - chr3_3:88474153-88474172 None:intergenic 35.0%
TGACAGGAACATAAAATGGA+GGG - chr3_3:88474181-88474200 None:intergenic 35.0%
TTGACAGGAACATAAAATGG+AGG - chr3_3:88474182-88474201 None:intergenic 35.0%
ATAAGTTGCTGAAAATCCAG+AGG + chr3_3:88474226-88474245 Msa0482040:CDS 35.0%
TAAGTTGCTGAAAATCCAGA+GGG + chr3_3:88474227-88474246 Msa0482040:CDS 35.0%
ATGCATGCTAAACACTTACA+AGG - chr3_3:88474275-88474294 None:intergenic 35.0%
TTGTAAGTGTTTAGCATGCA+TGG + chr3_3:88474274-88474293 Msa0482040:intron 35.0%
CAACTGAATGATTGCTAATC+AGG - chr3_3:88474568-88474587 None:intergenic 35.0%
!! TTAGAAGTACTCATGCTTCA+GGG - chr3_3:88474738-88474757 None:intergenic 35.0%
!! TTTAGAAGTACTCATGCTTC+AGG - chr3_3:88474739-88474758 None:intergenic 35.0%
TTTACTTGATTAATCCAGGG+TGG + chr3_3:88474778-88474797 Msa0482040:intron 35.0%
ATTCTCTCTCTTGCTTATGA+TGG + chr3_3:88474873-88474892 Msa0482040:intron 35.0%
! CTTGCTTATGATGGAAATAG+TGG + chr3_3:88474882-88474901 Msa0482040:intron 35.0%
! TATGATGGAAATAGTGGAAG+CGG + chr3_3:88474888-88474907 Msa0482040:intron 35.0%
! GCATGATGATGATAGAAGTA+TGG + chr3_3:88474936-88474955 Msa0482040:intron 35.0%
! AGAAAAGCCTTATGAAGCAT+AGG - chr3_3:88475170-88475189 None:intergenic 35.0%
GAATGCATATGTGTACATTC+AGG + chr3_3:88475461-88475480 Msa0482040:intron 35.0%
! TACTAAAGCTTTGGTGTATG+TGG + chr3_3:88475519-88475538 Msa0482040:intron 35.0%
! ACTAAAGCTTTGGTGTATGT+GGG + chr3_3:88475520-88475539 Msa0482040:intron 35.0%
GTTATGGCATTCATTAAGCA+TGG + chr3_3:88475545-88475564 Msa0482040:intron 35.0%
! AATATTGCTGGTTAGGTTCT+TGG + chr3_3:88475611-88475630 Msa0482040:intron 35.0%
! TATATCACCTCTAAGGATAC+AGG + chr3_3:88475810-88475829 Msa0482040:intron 35.0%
! ATATCACCTCTAAGGATACA+GGG + chr3_3:88475811-88475830 Msa0482040:intron 35.0%
TTAAAACCCTGTATCCTTAG+AGG - chr3_3:88475820-88475839 None:intergenic 35.0%
CGTATGATGAATACACTGAT+AGG + chr3_3:88475897-88475916 Msa0482040:intron 35.0%
CAAATTGGAGGGATAGTTAA+GGG - chr3_3:88476094-88476113 None:intergenic 35.0%
TTACCATGTGCATAGCAAAT+TGG - chr3_3:88476109-88476128 None:intergenic 35.0%
GAAAATTGGAGGGATAGTTA+AGG - chr3_3:88476218-88476237 None:intergenic 35.0%
GAGTGGAATTATCATGTACA+CGG - chr3_3:88476240-88476259 None:intergenic 35.0%
!! TTTCAAGATACTTTTCAGGC+AGG - chr3_3:88476360-88476379 None:intergenic 35.0%
! TGTCACCAACATTGATTATC+AGG + chr3_3:88476405-88476424 Msa0482040:CDS 35.0%
AGCTACCTGATAATCAATGT+TGG - chr3_3:88476413-88476432 None:intergenic 35.0%
CCAAAAAGGCAATAAAAGCA+AGG - chr3_3:88476607-88476626 None:intergenic 35.0%
!! CCTTGCTTTTATTGCCTTTT+TGG + chr3_3:88476604-88476623 Msa0482040:intron 35.0%
GAAACAAAGTTATGTGAGGA+TGG - chr3_3:88476992-88477011 None:intergenic 35.0%
!!! TTTTAATTGGAGTTTTGGGG+TGG - chr3_3:88477059-88477078 None:intergenic 35.0%
! AGTTTGCTTGTTGCTTATTG+TGG - chr3_3:88477117-88477136 None:intergenic 35.0%
CCTTTAACAGATTTGTGTAG+AGG - chr3_3:88477264-88477283 None:intergenic 35.0%
CCTCTACACAAATCTGTTAA+AGG + chr3_3:88477261-88477280 Msa0482040:CDS 35.0%
!!! AATTTTGGGTTTCTGAGAGA+AGG + chr3_3:88477288-88477307 Msa0482040:CDS 35.0%
! AATTTTACGGACACGTGAAT+AGG - chr3_3:88477412-88477431 None:intergenic 35.0%
AGTTAAAGAGGACTGCTATT+TGG - chr3_3:88477455-88477474 None:intergenic 35.0%
GTTGGTTGTATTTCAAGAAG+AGG + chr3_3:88477580-88477599 Msa0482040:intron 35.0%
TGAACAGATGTTCTACAAAC+AGG + chr3_3:88477679-88477698 Msa0482040:intron 35.0%
CAATATTGTACAACACTGGT+TGG - chr3_3:88477714-88477733 None:intergenic 35.0%
AGCATCTCAAACAAGGTTAA+AGG - chr3_3:88477945-88477964 None:intergenic 35.0%
CATAGTAAGCATCTCAAACA+AGG - chr3_3:88477952-88477971 None:intergenic 35.0%
TATATGAGCTTACTTGGAAG+TGG + chr3_3:88478080-88478099 Msa0482040:three_prime_UTR 35.0%
! TTTTGTCAATGTGGGGGAAA+AGG - chr3_3:88471718-88471737 None:intergenic 40.0%
!!! ATCTGGTTTTGTCAATGTGG+GGG - chr3_3:88471724-88471743 None:intergenic 40.0%
!!! CATCTGGTTTTGTCAATGTG+GGG - chr3_3:88471725-88471744 None:intergenic 40.0%
!!! GCATCTGGTTTTGTCAATGT+GGG - chr3_3:88471726-88471745 None:intergenic 40.0%
!!! TGCATCTGGTTTTGTCAATG+TGG - chr3_3:88471727-88471746 None:intergenic 40.0%
GTGTTAAGGAAAGGACTGAA+TGG - chr3_3:88471864-88471883 None:intergenic 40.0%
CCCTGAGATATGGAAATTGA+AGG - chr3_3:88472199-88472218 None:intergenic 40.0%
! TTGCGTTGATCTATCTGGAT+CGG + chr3_3:88472277-88472296 Msa0482040:intron 40.0%
ACATCAACACTTCTGATCGA+AGG - chr3_3:88472501-88472520 None:intergenic 40.0%
!! TTCGATCAGAAGTGTTGATG+TGG + chr3_3:88472500-88472519 Msa0482040:intron 40.0%
GTGCATGCTTACAACAGAAA+TGG + chr3_3:88472586-88472605 Msa0482040:CDS 40.0%
! AGAAATGGACTTTGTGCAGT+GGG + chr3_3:88472601-88472620 Msa0482040:CDS 40.0%
ACTTTGTGCAGTGGGATTTA+TGG + chr3_3:88472609-88472628 Msa0482040:CDS 40.0%
! TGCGTTTTCTCTTCTCAATC+AGG + chr3_3:88472654-88472673 Msa0482040:CDS 40.0%
AGAGTGAGAGCAATGTGTAT+TGG + chr3_3:88472679-88472698 Msa0482040:intron 40.0%
CCCATGTTCCACTTGAAAAA+AGG + chr3_3:88472860-88472879 Msa0482040:intron 40.0%
TTGTAGGACAAAGCAAGCAA+TGG - chr3_3:88472980-88472999 None:intergenic 40.0%
! GAATGGATTTGTCCAGTTAG+AGG + chr3_3:88473004-88473023 Msa0482040:intron 40.0%
ACAAAGTACACCATGGTGAT+TGG - chr3_3:88473076-88473095 None:intergenic 40.0%
TGGTACAACAAAGTACACCA+TGG - chr3_3:88473083-88473102 None:intergenic 40.0%
! TAACTGTGCATTGACGCTTT+AGG + chr3_3:88473203-88473222 Msa0482040:intron 40.0%
CGAGGAAGTTAGACAAGATT+GGG - chr3_3:88473403-88473422 None:intergenic 40.0%
ACGAGGAAGTTAGACAAGAT+TGG - chr3_3:88473404-88473423 None:intergenic 40.0%
!! ATTGGTCATCGTTGATTCGA+CGG - chr3_3:88473447-88473466 None:intergenic 40.0%
!!! GATTTTAACTGTTGGGGTCA+AGG + chr3_3:88473472-88473491 Msa0482040:intron 40.0%
! ATACGGGAATTTAAAGCTGC+AGG - chr3_3:88473804-88473823 None:intergenic 40.0%
TAAATTCCCGTATGTTTGGG+TGG + chr3_3:88473811-88473830 Msa0482040:intron 40.0%
!! TGAATCATGGAGAAGCATTC+AGG + chr3_3:88473960-88473979 Msa0482040:CDS 40.0%
CGTGAGAGCTTCATTCAAAT+AGG - chr3_3:88474007-88474026 None:intergenic 40.0%
TATGTTCCTGTCAAATCTCC+AGG + chr3_3:88474188-88474207 Msa0482040:intron 40.0%
TTGTATTGCAACGCAGCATA+TGG + chr3_3:88474299-88474318 Msa0482040:intron 40.0%
TGTATTGCAACGCAGCATAT+GGG + chr3_3:88474300-88474319 Msa0482040:intron 40.0%
! GTTTGTTTGAGATTCGGCAT+TGG + chr3_3:88474399-88474418 Msa0482040:intron 40.0%
CACATCACGATGCTATGAAA+TGG - chr3_3:88474517-88474536 None:intergenic 40.0%
!! TAGAAGTACTCATGCTTCAG+GGG - chr3_3:88474737-88474756 None:intergenic 40.0%
CAACAAAAACGTACAAGCGA+TGG + chr3_3:88474810-88474829 Msa0482040:intron 40.0%
ACCTGTACCTATGCTTCATA+AGG + chr3_3:88475160-88475179 Msa0482040:intron 40.0%
CAAAACAAGCCAATAGAGTG+AGG - chr3_3:88475201-88475220 None:intergenic 40.0%
!!! CTCACTCTATTGGCTTGTTT+TGG + chr3_3:88475199-88475218 Msa0482040:intron 40.0%
CACTACATTTGTGTGTGATG+TGG - chr3_3:88475263-88475282 None:intergenic 40.0%
ATATGCATTCACGGAATCAC+GGG - chr3_3:88475451-88475470 None:intergenic 40.0%
CATATGCATTCACGGAATCA+CGG - chr3_3:88475452-88475471 None:intergenic 40.0%
!! AAGCATGGCTTTAGTGTATG+TGG + chr3_3:88475560-88475579 Msa0482040:intron 40.0%
! GGCTTTAGTGTATGTGGTTA+TGG + chr3_3:88475566-88475585 Msa0482040:intron 40.0%
AGAACATGCAGCATGCAAAT+AGG + chr3_3:88475676-88475695 Msa0482040:intron 40.0%
GAATGTGCTCTCATATAAGC+TGG + chr3_3:88475781-88475800 Msa0482040:intron 40.0%
!!! CAGGGTTTTAAATGTTGCCT+AGG + chr3_3:88475829-88475848 Msa0482040:intron 40.0%
TCTTAAGTCTCTTGACTCCT+AGG - chr3_3:88475849-88475868 None:intergenic 40.0%
GGCTTGTAACTTGGATCTAT+AGG - chr3_3:88476021-88476040 None:intergenic 40.0%
GCAAATTGGAGGGATAGTTA+AGG - chr3_3:88476095-88476114 None:intergenic 40.0%
CATGTGCATAGCAAATTGGA+GGG - chr3_3:88476105-88476124 None:intergenic 40.0%
TCATTATTGGGCCTGTAACT+TGG - chr3_3:88476153-88476172 None:intergenic 40.0%
GTGGCGTTCTTCTCATTATT+GGG - chr3_3:88476165-88476184 None:intergenic 40.0%
CATGTACACGGAAAATTGGA+GGG - chr3_3:88476228-88476247 None:intergenic 40.0%
TCATGTACACGGAAAATTGG+AGG - chr3_3:88476229-88476248 None:intergenic 40.0%
!! TCAATGCTACCTTTTAGGAG+TGG - chr3_3:88476257-88476276 None:intergenic 40.0%
! GTGGATCAATGCTACCTTTT+AGG - chr3_3:88476262-88476281 None:intergenic 40.0%
!! GATAGGTTTCTGGAGTCTAT+TGG - chr3_3:88476330-88476349 None:intergenic 40.0%
!! AGGTGGTATTGATAGGTTTC+TGG - chr3_3:88476340-88476359 None:intergenic 40.0%
TCTTGAAATGCAGTGCTTCA+AGG + chr3_3:88476372-88476391 Msa0482040:CDS 40.0%
CTTGAAATGCAGTGCTTCAA+GGG + chr3_3:88476373-88476392 Msa0482040:CDS 40.0%
TGAATACATCTGTTTCCACG+CGG + chr3_3:88476761-88476780 Msa0482040:intron 40.0%
ATATCAAAAAGTTCACCGCG+TGG - chr3_3:88476779-88476798 None:intergenic 40.0%
GTATCAAAACAATTGAGCGG+TGG - chr3_3:88476873-88476892 None:intergenic 40.0%
AACTGCCTCCACAATTTAAC+AGG + chr3_3:88477133-88477152 Msa0482040:intron 40.0%
! AAGAGGACTGCTATTTGGTA+CGG - chr3_3:88477450-88477469 None:intergenic 40.0%
AACATCATCAATGTCGGAAC+AGG - chr3_3:88477779-88477798 None:intergenic 40.0%
!! TGTTCCGACATTGATGATGT+TGG + chr3_3:88477778-88477797 Msa0482040:CDS 40.0%
CCATCCAACATCATCAATGT+CGG - chr3_3:88477785-88477804 None:intergenic 40.0%
!! CGACATTGATGATGTTGGAT+GGG + chr3_3:88477783-88477802 Msa0482040:CDS 40.0%
!! GACATTGATGATGTTGGATG+GGG + chr3_3:88477784-88477803 Msa0482040:CDS 40.0%
CCGTCTGCAATACATATATC+GGG - chr3_3:88477873-88477892 None:intergenic 40.0%
CCCGATATATGTATTGCAGA+CGG + chr3_3:88477870-88477889 Msa0482040:three_prime_UTR 40.0%
CCCGTCTGCAATACATATAT+CGG - chr3_3:88477874-88477893 None:intergenic 40.0%
CCGATATATGTATTGCAGAC+GGG + chr3_3:88477871-88477890 Msa0482040:three_prime_UTR 40.0%
GGGAACGAAATATTAGCCAA+AGG + chr3_3:88477891-88477910 Msa0482040:three_prime_UTR 40.0%
GTGCTGGAAAGATGAAACTG+CGG - chr3_3:88471802-88471821 None:intergenic 45.0%
GGTGTGTGTGTGTTAAGGAA+AGG - chr3_3:88471873-88471892 None:intergenic 45.0%
AATGAAGATCACGGCTCTGT+TGG + chr3_3:88471980-88471999 Msa0482040:exon 45.0%
!! CTGTTGGTGCTAAAATCCAC+CGG + chr3_3:88471996-88472015 Msa0482040:CDS 45.0%
GTAACCGAAGTGACTCACAT+CGG - chr3_3:88472057-88472076 None:intergenic 45.0%
! CTGAGGAGTACGATTAGCTA+CGG - chr3_3:88472126-88472145 None:intergenic 45.0%
GTAGCTAATCGTACTCCTCA+GGG + chr3_3:88472125-88472144 Msa0482040:CDS 45.0%
! TGCGTTGATCTATCTGGATC+GGG + chr3_3:88472278-88472297 Msa0482040:intron 45.0%
! CAGAAATGGACTTTGTGCAG+TGG + chr3_3:88472600-88472619 Msa0482040:CDS 45.0%
AGAGAAAACGCACTACGAAC+TGG - chr3_3:88472646-88472665 None:intergenic 45.0%
TTATGTTTCGAGCAACCTCG+TGG + chr3_3:88472732-88472751 Msa0482040:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3_3:88472938-88472957 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr3_3:88472939-88472958 None:intergenic 45.0%
AGTTACCTTGCCAATCACCA+TGG + chr3_3:88473063-88473082 Msa0482040:intron 45.0%
CGTCTGACCATATCTCACTA+CGG - chr3_3:88473132-88473151 None:intergenic 45.0%
TTATGTCCCTGGTATTGCTG+AGG + chr3_3:88473174-88473193 Msa0482040:intron 45.0%
AAGTGTCCTCAGCAATACCA+GGG - chr3_3:88473183-88473202 None:intergenic 45.0%
! AAAGTGTCCTCAGCAATACC+AGG - chr3_3:88473184-88473203 None:intergenic 45.0%
! TGTGCATTGACGCTTTAGGT+TGG + chr3_3:88473207-88473226 Msa0482040:intron 45.0%
ACTTATTCAAGCCGAGCAGA+GGG - chr3_3:88473234-88473253 None:intergenic 45.0%
AACTTATTCAAGCCGAGCAG+AGG - chr3_3:88473235-88473254 None:intergenic 45.0%
! TCTGCTCGGCTTGAATAAGT+TGG + chr3_3:88473234-88473253 Msa0482040:intron 45.0%
TTATCCGCCACCCAAACATA+CGG - chr3_3:88473821-88473840 None:intergenic 45.0%
TATATTCATCCAGCACCTGC+AGG - chr3_3:88473927-88473946 None:intergenic 45.0%
GCTTCATTCAAATAGGGCCA+TGG - chr3_3:88474000-88474019 None:intergenic 45.0%
TGAAGCTCTCACGAAATTCC+AGG + chr3_3:88474014-88474033 Msa0482040:CDS 45.0%
! ATGCTTGGGTTGCATGATAC+TGG - chr3_3:88474455-88474474 None:intergenic 45.0%
TGTTGTACTATCAACCACCC+TGG - chr3_3:88474795-88474814 None:intergenic 45.0%
GCCTTATGAAGCATAGGTAC+AGG - chr3_3:88475164-88475183 None:intergenic 45.0%
TCATTCCCTCCTCACTCTAT+TGG + chr3_3:88475189-88475208 Msa0482040:intron 45.0%
ACAAGCCAATAGAGTGAGGA+GGG - chr3_3:88475197-88475216 None:intergenic 45.0%
AACAAGCCAATAGAGTGAGG+AGG - chr3_3:88475198-88475217 None:intergenic 45.0%
TCGTGCAAGCACACTATCAA+TGG - chr3_3:88475328-88475347 None:intergenic 45.0%
!! ATTGATAGTGTGCTTGCACG+AGG + chr3_3:88475327-88475346 Msa0482040:CDS 45.0%
! AAAGCTTTGGTGTATGTGGG+TGG + chr3_3:88475523-88475542 Msa0482040:intron 45.0%
TTGGTGTATGTGGGTGGTTA+TGG + chr3_3:88475529-88475548 Msa0482040:intron 45.0%
GGATCTATAGGTGTTCACCT+TGG - chr3_3:88476009-88476028 None:intergenic 45.0%
! CAGATCTGAAGTCAGAGAGA+TGG - chr3_3:88476061-88476080 None:intergenic 45.0%
CCATGTGCATAGCAAATTGG+AGG - chr3_3:88476106-88476125 None:intergenic 45.0%
!! CCTCCAATTTGCTATGCACA+TGG + chr3_3:88476103-88476122 Msa0482040:intron 45.0%
GGTGGCGTTCTTCTCATTAT+TGG - chr3_3:88476166-88476185 None:intergenic 45.0%
! CAACAGATCTGAAGTCAGAG+AGG - chr3_3:88476064-88476083 None:intergenic 45.0%
ACTCTAATGCTCGGGTTATG+TGG - chr3_3:88476281-88476300 None:intergenic 45.0%
CCAACAAGACTCTAATGCTC+GGG - chr3_3:88476289-88476308 None:intergenic 45.0%
CCCAACAAGACTCTAATGCT+CGG - chr3_3:88476290-88476309 None:intergenic 45.0%
!! CCGAGCATTAGAGTCTTGTT+GGG + chr3_3:88476287-88476306 Msa0482040:intron 45.0%
!! TTCAGGCAGGTGGTATTGAT+AGG - chr3_3:88476347-88476366 None:intergenic 45.0%
!! CAAGATACTTTTCAGGCAGG+TGG - chr3_3:88476357-88476376 None:intergenic 45.0%
AGATACACTGAAGGGGCAAT+TGG - chr3_3:88476466-88476485 None:intergenic 45.0%
AGACTAGACGCTTCTGTGTT+TGG - chr3_3:88476542-88476561 None:intergenic 45.0%
!! GGTGGTAGTGGTGAACTTAA+GGG - chr3_3:88476855-88476874 None:intergenic 45.0%
AAACAATTGAGCGGTGGTAG+TGG - chr3_3:88476867-88476886 None:intergenic 45.0%
GTCAGCTCAGCAAAGTAAGT+GGG - chr3_3:88477639-88477658 None:intergenic 45.0%
TGTCAGCTCAGCAAAGTAAG+TGG - chr3_3:88477640-88477659 None:intergenic 45.0%
ACGAGCTCGCATAATACTGA+TGG - chr3_3:88477750-88477769 None:intergenic 45.0%
!! CCGACATTGATGATGTTGGA+TGG + chr3_3:88477782-88477801 Msa0482040:CDS 45.0%
AGCCAAAGGTCTTACCATGT+TGG + chr3_3:88477905-88477924 Msa0482040:three_prime_UTR 45.0%
TGCCAACATGGTAAGACCTT+TGG - chr3_3:88477910-88477929 None:intergenic 45.0%
!! AATAAAAACAATAAAAAAAA+CGG - chr3_3:88472334-88472353 None:intergenic 5.0%
AATGTGGGGGAAAAGGTGAC+GGG - chr3_3:88471711-88471730 None:intergenic 50.0%
CAATGTGGGGGAAAAGGTGA+CGG - chr3_3:88471712-88471731 None:intergenic 50.0%
ACTACCCTCACCATAAAGCG+AGG + chr3_3:88471755-88471774 Msa0482040:five_prime_UTR 50.0%
CAGTCGGTGTGTGTGTGTTA+AGG - chr3_3:88471878-88471897 None:intergenic 50.0%
TGTTGTGATTCGCACGCAGT+CGG - chr3_3:88471894-88471913 None:intergenic 50.0%
GCTTCCGATGTGAGTCACTT+CGG + chr3_3:88472050-88472069 Msa0482040:CDS 50.0%
CGTAGCTAATCGTACTCCTC+AGG + chr3_3:88472124-88472143 Msa0482040:CDS 50.0%
CGTCAATCTGTTCAGCACGA+AGG + chr3_3:88472152-88472171 Msa0482040:CDS 50.0%
!! TGATCGAAGGAGTGTCCATG+TGG - chr3_3:88472488-88472507 None:intergenic 50.0%
!! CAACCTCGTGGTAGCTTGTT+AGG + chr3_3:88472744-88472763 Msa0482040:intron 50.0%
ACACCTAACAAGCTACCACG+AGG - chr3_3:88472750-88472769 None:intergenic 50.0%
AAGTGGGGTCGGCTAAGTAA+CGG - chr3_3:88472923-88472942 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr3_3:88472934-88472953 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr3_3:88472940-88472959 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr3_3:88472937-88472956 Msa0482040:intron 50.0%
GTACACCATGGTGATTGGCA+AGG - chr3_3:88473071-88473090 None:intergenic 50.0%
CTTATTCAAGCCGAGCAGAG+GGG - chr3_3:88473233-88473252 None:intergenic 50.0%
CCTTTGTGAGCATGTTCACG+AGG - chr3_3:88473421-88473440 None:intergenic 50.0%
CCTCGTGAACATGCTCACAA+AGG + chr3_3:88473418-88473437 Msa0482040:intron 50.0%
! CGGGAATTTAAAGCTGCAGG+CGG - chr3_3:88473801-88473820 None:intergenic 50.0%
ATTCCCGTATGTTTGGGTGG+CGG + chr3_3:88473814-88473833 Msa0482040:intron 50.0%
TATCCGCCACCCAAACATAC+GGG - chr3_3:88473820-88473839 None:intergenic 50.0%
ATATGATGTCCTGCAGGTGC+TGG + chr3_3:88473915-88473934 Msa0482040:intron 50.0%
! AGGCAGACAGTACTGAACCA+TGG + chr3_3:88473980-88473999 Msa0482040:CDS 50.0%
!! TGCAGAGGCATTTACATGCC+TGG - chr3_3:88474035-88474054 None:intergenic 50.0%
GCAACTTATCAGCCTCTGCA+GGG - chr3_3:88474215-88474234 None:intergenic 50.0%
AGCAACTTATCAGCCTCTGC+AGG - chr3_3:88474216-88474235 None:intergenic 50.0%
GCTGAAAATCCAGAGGGAGT+TGG + chr3_3:88474233-88474252 Msa0482040:CDS 50.0%
TTGTTTCGTCCAACTCCCTC+TGG - chr3_3:88474245-88474264 None:intergenic 50.0%
TTTGCTCTGCAGCGATGCTT+GGG - chr3_3:88474469-88474488 None:intergenic 50.0%
! TTTTGCTCTGCAGCGATGCT+TGG - chr3_3:88474470-88474489 None:intergenic 50.0%
! GATGGAAATAGTGGAAGCGG+TGG + chr3_3:88474891-88474910 Msa0482040:intron 50.0%
TGATTTGAGTGCAGCATCGC+AGG + chr3_3:88475383-88475402 Msa0482040:CDS 50.0%
AGAGCAAATGCTTCCAGCCA+AGG + chr3_3:88475989-88476008 Msa0482040:intron 50.0%
CTATAGGTGTTCACCTTGGC+TGG - chr3_3:88476005-88476024 None:intergenic 50.0%
GAGGGATAGTTAAGGGACAC+AGG - chr3_3:88476087-88476106 None:intergenic 50.0%
! CAGATCTGAAGTCAGAGAGG+TGG - chr3_3:88476184-88476203 None:intergenic 50.0%
GAGGGATAGTTAAGGGACAC+AGG - chr3_3:88476087-88476106 None:intergenic 50.0%
! CCCGAGCATTAGAGTCTTGT+TGG + chr3_3:88476286-88476305 Msa0482040:intron 50.0%
ATGCAGTGCTTCAAGGGACT+TGG + chr3_3:88476379-88476398 Msa0482040:CDS 50.0%
TAGACGCTTCTGTGTTTGGC+TGG - chr3_3:88476538-88476557 None:intergenic 50.0%
!! CGGTGGTAGTGGTGAACTTA+AGG - chr3_3:88476856-88476875 None:intergenic 50.0%
! GGGTTTCTGAGAGAAGGAAC+AGG + chr3_3:88477294-88477313 Msa0482040:CDS 50.0%
GCTGCCTCGCTTTATGGTGA+GGG - chr3_3:88471762-88471781 None:intergenic 55.0%
ATGCTCGCTGCCTCGCTTTA+TGG - chr3_3:88471768-88471787 None:intergenic 55.0%
TAAAGCGAGGCAGCGAGCAT+TGG + chr3_3:88471768-88471787 Msa0482040:five_prime_UTR 55.0%
GTGCTAAAATCCACCGGCGA+TGG + chr3_3:88472002-88472021 Msa0482040:CDS 55.0%
CACCGGCGATGGTTCAGAAT+CGG + chr3_3:88472013-88472032 Msa0482040:CDS 55.0%
!! CACCGATTCTGAACCATCGC+CGG - chr3_3:88472018-88472037 None:intergenic 55.0%
ACAGATTGACGCTGACCCTG+AGG - chr3_3:88472143-88472162 None:intergenic 55.0%
CATGTGGCCGACACCAAAAC+AGG - chr3_3:88472472-88472491 None:intergenic 55.0%
!!! CTGTTTTGGTGTCGGCCACA+TGG + chr3_3:88472470-88472489 Msa0482040:intron 55.0%
ACTTAGCCGACCCCACTTAG+TGG + chr3_3:88472925-88472944 Msa0482040:intron 55.0%
CTTAGCCGACCCCACTTAGT+GGG + chr3_3:88472926-88472945 Msa0482040:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr3_3:88472932-88472951 Msa0482040:intron 55.0%
!! TTTAGGTTGGCCCCTCTGCT+CGG + chr3_3:88473220-88473239 Msa0482040:intron 55.0%
GACATGGTGGCAAGACACAG+GGG - chr3_3:88473649-88473668 None:intergenic 55.0%
GGACATGGTGGCAAGACACA+GGG - chr3_3:88473650-88473669 None:intergenic 55.0%
CAGGGTCCTGGAGATTTGAC+AGG - chr3_3:88474197-88474216 None:intergenic 55.0%
AAATCTCCAGGACCCTGCAG+AGG + chr3_3:88474200-88474219 Msa0482040:intron 55.0%
CGGAATCACGGGCAATCCAT+AGG - chr3_3:88475440-88475459 None:intergenic 55.0%
! AGATCAGAAAGTGCAGCGCG+TGG + chr3_3:88477378-88477397 Msa0482040:intron 55.0%
CGCTGCCTCGCTTTATGGTG+AGG - chr3_3:88471763-88471782 None:intergenic 60.0%
! TGATGCGGAAGCGTGTGTGC+TGG - chr3_3:88471818-88471837 None:intergenic 60.0%
CGATTCTGAACCATCGCCGG+TGG - chr3_3:88472015-88472034 None:intergenic 60.0%
CGGACATGGTGGCAAGACAC+AGG - chr3_3:88473651-88473670 None:intergenic 60.0%
TATCAGCCTCTGCAGGGTCC+TGG - chr3_3:88474209-88474228 None:intergenic 60.0%
GCTTGCACGAGGAGAGAAGC+TGG + chr3_3:88475338-88475357 Msa0482040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 88471673 88478161 88471673 ID=Msa0482040;Name=Msa0482040
chr3_3 mRNA 88471673 88478161 88471673 ID=Msa0482040-mRNA-1;Parent=Msa0482040;Name=Msa0482040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=308|0.42|0.62|0.75|0.85|0.87|8|306|316
chr3_3 exon 88471673 88472173 88471673 ID=Msa0482040-mRNA-1:exon:25795;Parent=Msa0482040-mRNA-1
chr3_3 exon 88472578 88472675 88472578 ID=Msa0482040-mRNA-1:exon:25796;Parent=Msa0482040-mRNA-1
chr3_3 exon 88473931 88474080 88473931 ID=Msa0482040-mRNA-1:exon:25797;Parent=Msa0482040-mRNA-1
chr3_3 exon 88474210 88474275 88474210 ID=Msa0482040-mRNA-1:exon:25798;Parent=Msa0482040-mRNA-1
chr3_3 exon 88475318 88475404 88475318 ID=Msa0482040-mRNA-1:exon:25799;Parent=Msa0482040-mRNA-1
chr3_3 exon 88476334 88476426 88476334 ID=Msa0482040-mRNA-1:exon:25800;Parent=Msa0482040-mRNA-1
chr3_3 exon 88477222 88477315 88477222 ID=Msa0482040-mRNA-1:exon:25801;Parent=Msa0482040-mRNA-1
chr3_3 exon 88477686 88478161 88477686 ID=Msa0482040-mRNA-1:exon:25802;Parent=Msa0482040-mRNA-1
chr3_3 five_prime_UTR 88471673 88471980 88471673 ID=Msa0482040-mRNA-1:five_prime_utr;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88471981 88472173 88471981 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88472578 88472675 88472578 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88473931 88474080 88473931 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88474210 88474275 88474210 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88475318 88475404 88475318 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88476334 88476426 88476334 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88477222 88477315 88477222 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 CDS 88477686 88477855 88477686 ID=Msa0482040-mRNA-1:cds;Parent=Msa0482040-mRNA-1
chr3_3 three_prime_UTR 88477856 88478161 88477856 ID=Msa0482040-mRNA-1:three_prime_utr;Parent=Msa0482040-mRNA-1
Gene Sequence

>Msa0482040

ATGAAGATCACGGCTCTGTTGGTGCTAAAATCCACCGGCGATGGTTCAGAATCGGTGTTTCTCGCAAACGCTTCCGATGTGAGTCACTTCGGTTACTTTCAACGATCCAGCGTTAAAGAGTTCATTGTTTTCGTAGGTCGTACCGTAGCTAATCGTACTCCTCAGGGTCAGCGTCAATCTGTTCAGCACGAAGAGTACAAGGTGCATGCTTACAACAGAAATGGACTTTGTGCAGTGGGATTTATGGATGATCACTATCCAGTTCGTAGTGCGTTTTCTCTTCTCAATCAGGTGCTGGATGAATATATTAAAAGTTTTGGTGAATCATGGAGAAGCATTCAGGCAGACAGTACTGAACCATGGCCCTATTTGAATGAAGCTCTCACGAAATTCCAGGCATGTAAATGCCTCTGCATTATATTGGCTTTAGCTAGAATAATAGACCCTGCAGAGGCTGATAAGTTGCTGAAAATCCAGAGGGAGTTGGACGAAACAAAAATCATCCTTCACAAGACCATTGATAGTGTGCTTGCACGAGGAGAGAAGCTGGACAGTTTAGTTGAGAAGAGTTCTGATTTGAGTGCAGCATCGCAGACTCCAGAAACCTATCAATACCACCTGCCTGAAAAGTATCTTGAAATGCAGTGCTTCAAGGGACTTGGCAATGTCACCAACATTGATTATCAGGTTGGGAAATTTGTTACTGTGTTTGTGGTATTCGTTGTTCCTCTACACAAATCTGTTAAAGGAAGGAATTTTGGGTTTCTGAGAGAAGGAACAGATGTTCTACAAACAGGCGAAAAAAACCAACCAGTGTTGTACAATATTGTAAGCTTTCAAGACCATCAGTATTATGCGAGCTCGTCTGAATCCTGTTCCGACATTGATGATGTTGGATGGGGCGAAAATAGCTTCATATGTCTATATCACTCTACATTGTTTGTTTTGTGA
Protein sequence

>Msa0482040

MKITALLVLKSTGDGSESVFLANASDVSHFGYFQRSSVKEFIVFVGRTVANRTPQGQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYIKSFGESWRSIQADSTEPWPYLNEALTKFQACKCLCIILALARIIDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQTPETYQYHLPEKYLEMQCFKGLGNVTNIDYQVGKFVTVFVVFVVPLHKSVKGRNFGFLREGTDVLQTGEKNQPVLYNIVSFQDHQYYASSSESCSDIDDVGWGENSFICLYHSTLFVL*