Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081310 | sp|Q09893|YAI5_SCHPO | 33.480 | 227 | 136 | 9 | 9 | 226 | 3 | 223 | 9.26e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081310 | I3SRG9 | 97.189 | 249 | 7 | 0 | 1 | 249 | 9 | 257 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024890 | Msa0081310 | 0.821342 | 4.248299e-53 | -8.615850e-47 |
| Msa0034310 | Msa0081310 | 0.993254 | 1.757193e-198 | -8.615850e-47 |
| Msa0081310 | Msa0128320 | 0.800809 | 1.210605e-48 | -8.615850e-47 |
| Msa0081310 | Msa0139720 | 0.809642 | 1.710525e-50 | -8.615850e-47 |
| Msa0081310 | Msa0173620 | 0.997045 | 4.852974e-236 | -8.615850e-47 |
| Msa0081310 | Msa0242700 | 0.864916 | 8.615040e-65 | -8.615850e-47 |
| Msa0081310 | Msa0280950 | 0.810928 | 9.029443e-51 | -8.615850e-47 |
| Msa0081310 | Msa0304990 | -0.805729 | 1.159928e-49 | -8.615850e-47 |
| Msa0081310 | Msa0465970 | -0.810403 | 1.172991e-50 | -8.615850e-47 |
| Msa0081310 | Msa0722930 | -0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa0081310 | Msa0723140 | -0.812807 | 3.520644e-51 | -8.615850e-47 |
| Msa0081310 | Msa0745460 | 0.815045 | 1.130379e-51 | -8.615850e-47 |
| Msa0081310 | Msa0796430 | 0.815669 | 8.211060e-52 | -8.615850e-47 |
| Msa0081310 | Msa0834270 | 0.836036 | 1.183655e-56 | -8.615850e-47 |
| Msa0081310 | Msa0921080 | -0.815846 | 7.499634e-52 | -8.615850e-47 |
| Msa0081310 | Msa0951720 | -0.817264 | 3.609296e-52 | -8.615850e-47 |
| Msa0081310 | Msa1002990 | 0.998117 | 1.455115e-256 | -8.615850e-47 |
| Msa0081310 | Msa1080790 | -0.824428 | 8.115719e-54 | -8.615850e-47 |
| Msa0081310 | Msa1118930 | -0.819148 | 1.352011e-52 | -8.615850e-47 |
| Msa0081310 | Msa1132560 | 0.812907 | 3.347319e-51 | -8.615850e-47 |
| Msa0081310 | Msa1132950 | -0.800147 | 1.651914e-48 | -8.615850e-47 |
| Msa0081310 | Msa1194940 | -0.809277 | 2.048782e-50 | -8.615850e-47 |
| Msa0081310 | Msa1287160 | -0.813977 | 1.947992e-51 | -8.615850e-47 |
| Msa0081310 | Msa1327320 | -0.803105 | 4.084797e-49 | -8.615850e-47 |
| Msa0081310 | Msa1370630 | -0.803152 | 3.995434e-49 | -8.615850e-47 |
| Msa0081310 | Msa1412760 | 0.984108 | 1.302625e-159 | -8.615850e-47 |
| Msa0081310 | Msa1416470 | 0.998548 | 2.124677e-268 | -8.615850e-47 |
| Msa0081310 | Msa1449670 | 0.993777 | 3.791833e-202 | -8.615850e-47 |
| Msa0081310 | Msa1457070 | -0.822037 | 2.934270e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081310 | MtrunA17_Chr1g0193721 | 97.189 | 249 | 7 | 0 | 1 | 249 | 1 | 249 | 0.0 | 506 |
| Msa0081310 | MtrunA17_Chr7g0238911 | 51.042 | 288 | 93 | 2 | 10 | 249 | 14 | 301 | 2.71e-101 | 296 |
| Msa0081310 | MtrunA17_Chr2g0328451 | 49.129 | 287 | 107 | 3 | 2 | 249 | 5 | 291 | 2.26e-96 | 284 |
| Msa0081310 | MtrunA17_Chr4g0031841 | 50.545 | 275 | 106 | 3 | 4 | 249 | 8 | 281 | 5.05e-96 | 282 |
| Msa0081310 | MtrunA17_Chr4g0009921 | 51.111 | 270 | 87 | 2 | 4 | 228 | 9 | 278 | 1.81e-94 | 279 |
| Msa0081310 | MtrunA17_Chr4g0009961 | 47.751 | 289 | 102 | 1 | 10 | 249 | 12 | 300 | 1.16e-91 | 272 |
| Msa0081310 | MtrunA17_Chr1g0205581 | 48.511 | 235 | 111 | 4 | 11 | 235 | 10 | 244 | 2.17e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081310 | AT3G62040.1 | 71.698 | 212 | 57 | 3 | 41 | 249 | 1 | 212 | 1.64e-107 | 309 |
| Msa0081310 | AT5G59480.4 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0081310 | AT5G59480.5 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0081310 | AT5G59480.3 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0081310 | AT5G59480.1 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0081310 | AT5G59480.2 | 50.549 | 273 | 103 | 3 | 4 | 245 | 8 | 279 | 4.86e-96 | 283 |
| Msa0081310 | AT5G02230.2 | 52.060 | 267 | 101 | 3 | 10 | 249 | 14 | 280 | 1.64e-88 | 264 |
| Msa0081310 | AT5G02230.1 | 52.060 | 267 | 101 | 3 | 10 | 249 | 14 | 280 | 1.64e-88 | 264 |
| Msa0081310 | AT5G59490.1 | 52.918 | 257 | 104 | 3 | 10 | 249 | 10 | 266 | 7.43e-88 | 261 |
| Msa0081310 | AT5G02230.3 | 52.060 | 267 | 101 | 3 | 10 | 249 | 51 | 317 | 8.78e-88 | 263 |
| Msa0081310 | AT2G32150.1 | 48.649 | 222 | 107 | 2 | 13 | 227 | 8 | 229 | 4.30e-78 | 236 |
| Msa0081310 | AT5G59490.2 | 57.635 | 203 | 74 | 2 | 10 | 200 | 10 | 212 | 4.04e-72 | 219 |
| Msa0081310 | AT2G32150.2 | 49.490 | 196 | 92 | 2 | 12 | 200 | 7 | 202 | 4.01e-67 | 207 |
| Msa0081310 | AT2G32150.3 | 50.286 | 175 | 80 | 2 | 13 | 180 | 8 | 182 | 3.81e-59 | 186 |
Find 79 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACCTCCCATATTTC+AGG | 0.199588 | 1_2:+59796764 | None:intergenic |
| CAATTAAACACCATAGTTTA+AGG | 0.205482 | 1_2:-59798658 | Msa0081310:five_prime_UTR |
| GAGAAGCATTACCTGAAATA+TGG | 0.252058 | 1_2:-59796775 | Msa0081310:CDS |
| ATTGAGCTTAGGGATCAATT+TGG | 0.335151 | 1_2:-59797970 | Msa0081310:CDS |
| AATACCTGGACCTTAAACTA+TGG | 0.336568 | 1_2:+59798648 | None:intergenic |
| ATTCGTTGGTAGGAGTTGAT+AGG | 0.339282 | 1_2:+59797244 | None:intergenic |
| TTGCAATTGGCATCACAAAA+TGG | 0.340643 | 1_2:-59796546 | Msa0081310:three_prime_UTR |
| AGGTTCCTTAACACGAAATC+TGG | 0.347342 | 1_2:+59797473 | None:intergenic |
| AATATACCGAACGAAATTAC+TGG | 0.354237 | 1_2:-59796478 | Msa0081310:three_prime_UTR |
| GGCTTGGAAGATTGCTTTGA+GGG | 0.359868 | 1_2:-59797292 | Msa0081310:CDS |
| ATGGATACTCAAAGGATTGC+TGG | 0.374412 | 1_2:-59798165 | Msa0081310:CDS |
| TGAACTTTGCATTTAATAGT+TGG | 0.387686 | 1_2:+59796520 | None:intergenic |
| ACCATCTGTGGAAGCCTTTG+AGG | 0.394435 | 1_2:-59797212 | Msa0081310:CDS |
| CTCTCTACCCATTGAGCTTA+GGG | 0.404141 | 1_2:-59797980 | Msa0081310:CDS |
| TCTGGCTTCAGTTTCTCATA+TGG | 0.405723 | 1_2:+59797491 | None:intergenic |
| ATATACTCGTAACAGTGATC+TGG | 0.410966 | 1_2:+59796355 | None:intergenic |
| TACAAATCCAGACACATCTT+TGG | 0.424509 | 1_2:+59797727 | None:intergenic |
| AAATGTATGAATCTTGCAAT+TGG | 0.426552 | 1_2:-59796559 | Msa0081310:three_prime_UTR |
| ACTCTCTACCCATTGAGCTT+AGG | 0.439304 | 1_2:-59797981 | Msa0081310:CDS |
| TGAAGCCAGATTTCGTGTTA+AGG | 0.440016 | 1_2:-59797478 | Msa0081310:CDS |
| TTAATTTCCTGTCAGGCCCT+TGG | 0.440659 | 1_2:-59797563 | Msa0081310:intron |
| TGGCTTCGACTGCAAGAGAT+TGG | 0.449210 | 1_2:+59796720 | None:intergenic |
| TGGCTTGGAAGATTGCTTTG+AGG | 0.450052 | 1_2:-59797293 | Msa0081310:CDS |
| TCTAGAACATGGAACAACTA+TGG | 0.451217 | 1_2:-59797704 | Msa0081310:CDS |
| TTCGTTGGTAGGAGTTGATA+GGG | 0.461128 | 1_2:+59797245 | None:intergenic |
| TATAGTACCAAAGATGTGTC+TGG | 0.470960 | 1_2:-59797734 | Msa0081310:CDS |
| AAATTGATCCCTAAGCTCAA+TGG | 0.472577 | 1_2:+59797972 | None:intergenic |
| AGTTCTCAGCAGGCTTGGCT+TGG | 0.483634 | 1_2:-59797308 | Msa0081310:CDS |
| GGTCGATCGGATTTAGTGCC+TGG | 0.483986 | 1_2:-59796833 | Msa0081310:CDS |
| GCCTCAAAGGCTTCCACAGA+TGG | 0.484285 | 1_2:+59797211 | None:intergenic |
| GTTGAAGTTCTCAGCAGGCT+TGG | 0.485005 | 1_2:-59797313 | Msa0081310:CDS |
| AATTGATCCCTAAGCTCAAT+GGG | 0.491033 | 1_2:+59797973 | None:intergenic |
| AACACCATAGTTTAAGGTCC+AGG | 0.491638 | 1_2:-59798652 | Msa0081310:intron |
| GTTGCAAGCGGAAAAGTAGC+TGG | 0.495148 | 1_2:-59796989 | Msa0081310:CDS |
| TAGTATACCTTGCACAAACT+AGG | 0.495714 | 1_2:+59796408 | None:intergenic |
| CTATCAACCACGCCGTCTCC+AGG | 0.500226 | 1_2:-59796388 | Msa0081310:three_prime_UTR |
| AGAAGCATTACCTGAAATAT+GGG | 0.503577 | 1_2:-59796774 | Msa0081310:CDS |
| GAGATTGGATCATTTGTTGT+TGG | 0.507343 | 1_2:+59796735 | None:intergenic |
| GATTCAAAGCTCTTTCAAGA+TGG | 0.508100 | 1_2:-59798184 | Msa0081310:exon |
| GCTTTCTTTAAGACGTTTCG+CGG | 0.509643 | 1_2:-59796437 | Msa0081310:three_prime_UTR |
| CTTGTTTACAGAGCATATGT+TGG | 0.516527 | 1_2:-59797779 | Msa0081310:intron |
| AACAACTATGGCAGGAATGA+AGG | 0.518265 | 1_2:-59797692 | Msa0081310:intron |
| ATGCGGTTGAAGTTCTCAGC+AGG | 0.526884 | 1_2:-59797318 | Msa0081310:CDS |
| TTTGCAGAGGATTCGTTGGT+AGG | 0.536737 | 1_2:+59797234 | None:intergenic |
| GAACATGGAACAACTATGGC+AGG | 0.541348 | 1_2:-59797700 | Msa0081310:CDS |
| ACTCACCCAGTAATTTCGTT+CGG | 0.548375 | 1_2:+59796472 | None:intergenic |
| AATCCTCTGCAAACCATCTG+TGG | 0.549541 | 1_2:-59797224 | Msa0081310:CDS |
| CATTGTCAAATTCGTAGCCA+AGG | 0.549744 | 1_2:+59797546 | None:intergenic |
| TTCAGAGCATGGTCAGCACC+AGG | 0.555322 | 1_2:+59796815 | None:intergenic |
| ATCGAAGCAAAACTTATGCA+TGG | 0.557183 | 1_2:+59796693 | None:intergenic |
| ATCTCTTGCAGTCGAAGCCA+CGG | 0.558687 | 1_2:-59796717 | Msa0081310:CDS |
| ATGGTTTGCAGAGGATTCGT+TGG | 0.560194 | 1_2:+59797230 | None:intergenic |
| AGTATACCTTGCACAAACTA+GGG | 0.562541 | 1_2:+59796409 | None:intergenic |
| TATACTCGTAACAGTGATCT+GGG | 0.563092 | 1_2:+59796356 | None:intergenic |
| GAGTTTCATGCTTATGTGCA+TGG | 0.564136 | 1_2:-59797521 | Msa0081310:CDS |
| TTACTGGGTGAGTCACGACC+AGG | 0.566531 | 1_2:-59796462 | Msa0081310:three_prime_UTR |
| CTGGATTTGTATCTAGAACA+TGG | 0.570926 | 1_2:-59797715 | Msa0081310:CDS |
| TTGATGACAGGTGGGTCGAT+CGG | 0.573116 | 1_2:-59796846 | Msa0081310:intron |
| TATGAATGCTGTTCAGAGCA+TGG | 0.576032 | 1_2:+59796804 | None:intergenic |
| CTTTCAAGATGGATACTCAA+AGG | 0.580368 | 1_2:-59798173 | Msa0081310:exon |
| CGCATGTGCGTGATCTGCGT+TGG | 0.594208 | 1_2:+59797336 | None:intergenic |
| CTTCCACAGATGGTTTGCAG+AGG | 0.599046 | 1_2:+59797221 | None:intergenic |
| AATTCTAATAGCAGCCTCAA+AGG | 0.600461 | 1_2:+59797198 | None:intergenic |
| ATATACCGAACGAAATTACT+GGG | 0.604916 | 1_2:-59796477 | Msa0081310:three_prime_UTR |
| ATTTAAGCACCACCATGCCA+TGG | 0.607196 | 1_2:+59796578 | None:intergenic |
| TTGTAATGGCCTCCATGGCA+TGG | 0.611695 | 1_2:-59796590 | Msa0081310:three_prime_UTR |
| GCATGTCGCAAGAACATACA+AGG | 0.614967 | 1_2:-59797948 | Msa0081310:intron |
| ATTGTCAAATTCGTAGCCAA+GGG | 0.618916 | 1_2:+59797547 | None:intergenic |
| AGTGTTAGAAATGTTGCAAG+CGG | 0.624326 | 1_2:-59797001 | Msa0081310:CDS |
| GCTGAGGCATGGAAAGCAGA+AGG | 0.639829 | 1_2:+59797453 | None:intergenic |
| AGATAGACAAAACTCTGCTG+AGG | 0.650985 | 1_2:+59796628 | None:intergenic |
| CAACGCAGATCACGCACATG+CGG | 0.653925 | 1_2:-59797335 | Msa0081310:CDS |
| GCACTACCCTAGTTTGTGCA+AGG | 0.661073 | 1_2:-59796415 | Msa0081310:three_prime_UTR |
| ACGTCTTAAAGAAAGCGACC+TGG | 0.675817 | 1_2:+59796444 | None:intergenic |
| AGCATTACCTGAAATATGGG+AGG | 0.676770 | 1_2:-59796771 | Msa0081310:CDS |
| TAATGGCCTCCATGGCATGG+TGG | 0.680313 | 1_2:-59796587 | Msa0081310:three_prime_UTR |
| TAAGCACCACCATGCCATGG+AGG | 0.695428 | 1_2:+59796581 | None:intergenic |
| CAAAACTTATGCATGGACCG+TGG | 0.699924 | 1_2:+59796700 | None:intergenic |
| TATATCTTACAATAACAGTG+TGG | 0.713748 | 1_2:+59796963 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATGTATTATTTTATTATA+TGG | - | chr1_2:59796477-59796496 | Msa0081310:three_prime_UTR | 10.0% |
| !!! | TTAAAAGTAAATATTGATTA+TGG | - | chr1_2:59796993-59797012 | Msa0081310:CDS | 10.0% |
| !!! | TGATGTATTATTTTATTATA+TGG | - | chr1_2:59796477-59796496 | Msa0081310:three_prime_UTR | 10.0% |
| !!! | TTAAAAGTAAATATTGATTA+TGG | - | chr1_2:59796993-59797012 | Msa0081310:CDS | 10.0% |
| !!! | GAAAAGTATATAAAAACTAA+AGG | + | chr1_2:59796412-59796431 | None:intergenic | 15.0% |
| !!! | AAAGAATATTTTGAGTATTA+CGG | + | chr1_2:59797663-59797682 | None:intergenic | 15.0% |
| !!! | AATCTACAATAATTTTGTAA+TGG | - | chr1_2:59798426-59798445 | Msa0081310:intron | 15.0% |
| !!! | GAAAAGTATATAAAAACTAA+AGG | + | chr1_2:59796412-59796431 | None:intergenic | 15.0% |
| !!! | AAAGAATATTTTGAGTATTA+CGG | + | chr1_2:59797663-59797682 | None:intergenic | 15.0% |
| !!! | AATCTACAATAATTTTGTAA+TGG | - | chr1_2:59798426-59798445 | Msa0081310:intron | 15.0% |
| !! | TAATAATCTTGCATGAATAT+TGG | - | chr1_2:59796925-59796944 | Msa0081310:intron | 20.0% |
| !! | TTCTATATGAAAATTTGAAG+AGG | + | chr1_2:59796968-59796987 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTTCATATAGA+AGG | - | chr1_2:59796967-59796986 | Msa0081310:intron | 20.0% |
| !! | TAATAATCTTGCATGAATAT+TGG | - | chr1_2:59796925-59796944 | Msa0081310:intron | 20.0% |
| !! | TTCTATATGAAAATTTGAAG+AGG | + | chr1_2:59796968-59796987 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTTCATATAGA+AGG | - | chr1_2:59796967-59796986 | Msa0081310:intron | 20.0% |
| ! | CAATTAAACACCATAGTTTA+AGG | - | chr1_2:59796372-59796391 | Msa0081310:three_prime_UTR | 25.0% |
| ! | AATATCAAGACCTTAATGAA+AGG | + | chr1_2:59796442-59796461 | None:intergenic | 25.0% |
| ! | TATTATATGGTCCATAATGA+TGG | - | chr1_2:59796490-59796509 | Msa0081310:three_prime_UTR | 25.0% |
| ! | TTGATCATCAATCATTTCAT+GGG | + | chr1_2:59796551-59796570 | None:intergenic | 25.0% |
| ! | TTTGATCATCAATCATTTCA+TGG | + | chr1_2:59796552-59796571 | None:intergenic | 25.0% |
| !! | CTTTTCTATTTCAGACTTTT+CGG | - | chr1_2:59796702-59796721 | Msa0081310:exon | 25.0% |
| ! | ATATGAAATAATCTGAACAC+TGG | + | chr1_2:59797146-59797165 | None:intergenic | 25.0% |
| ! | AAACAAGATTGATCAACTAT+AGG | + | chr1_2:59797238-59797257 | None:intergenic | 25.0% |
| ! | AGTAAGTCAATAAAAAACTG+TGG | + | chr1_2:59797383-59797402 | None:intergenic | 25.0% |
| !! | ATCAATCTTACTGTTTTCTT+TGG | + | chr1_2:59797870-59797889 | None:intergenic | 25.0% |
| ! | TATATCTTACAATAACAGTG+TGG | + | chr1_2:59798070-59798089 | None:intergenic | 25.0% |
| ! | AAATGTATGAATCTTGCAAT+TGG | - | chr1_2:59798471-59798490 | Msa0081310:intron | 25.0% |
| ! | TGAACTTTGCATTTAATAGT+TGG | + | chr1_2:59798513-59798532 | None:intergenic | 25.0% |
| ! | CAATTAAACACCATAGTTTA+AGG | - | chr1_2:59796372-59796391 | Msa0081310:three_prime_UTR | 25.0% |
| ! | AATATCAAGACCTTAATGAA+AGG | + | chr1_2:59796442-59796461 | None:intergenic | 25.0% |
| ! | TATTATATGGTCCATAATGA+TGG | - | chr1_2:59796490-59796509 | Msa0081310:three_prime_UTR | 25.0% |
| ! | TTGATCATCAATCATTTCAT+GGG | + | chr1_2:59796551-59796570 | None:intergenic | 25.0% |
| ! | TTTGATCATCAATCATTTCA+TGG | + | chr1_2:59796552-59796571 | None:intergenic | 25.0% |
| !! | CTTTTCTATTTCAGACTTTT+CGG | - | chr1_2:59796702-59796721 | Msa0081310:exon | 25.0% |
| ! | ATATGAAATAATCTGAACAC+TGG | + | chr1_2:59797146-59797165 | None:intergenic | 25.0% |
| ! | AAACAAGATTGATCAACTAT+AGG | + | chr1_2:59797238-59797257 | None:intergenic | 25.0% |
| ! | AGTAAGTCAATAAAAAACTG+TGG | + | chr1_2:59797383-59797402 | None:intergenic | 25.0% |
| !! | ATCAATCTTACTGTTTTCTT+TGG | + | chr1_2:59797870-59797889 | None:intergenic | 25.0% |
| ! | TATATCTTACAATAACAGTG+TGG | + | chr1_2:59798070-59798089 | None:intergenic | 25.0% |
| ! | AAATGTATGAATCTTGCAAT+TGG | - | chr1_2:59798471-59798490 | Msa0081310:intron | 25.0% |
| ! | TGAACTTTGCATTTAATAGT+TGG | + | chr1_2:59798513-59798532 | None:intergenic | 25.0% |
| AAACTAAAGGAAACAATACC+TGG | + | chr1_2:59796399-59796418 | None:intergenic | 30.0% | |
| TGATCACAGAATTAAATGCT+AGG | + | chr1_2:59796578-59796597 | None:intergenic | 30.0% | |
| CAACAAGTATGTCTTTCTTA+TGG | - | chr1_2:59796596-59796615 | Msa0081310:three_prime_UTR | 30.0% | |
| GTCTTTCTTATGGTCAAATT+TGG | - | chr1_2:59796606-59796625 | Msa0081310:three_prime_UTR | 30.0% | |
| !! | TCTTTGAAACGTACTTTGTT+AGG | - | chr1_2:59796660-59796679 | Msa0081310:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGTTCTTTCTCCA+AGG | + | chr1_2:59796795-59796814 | None:intergenic | 30.0% |
| !!! | GCACTCATAGTTTATTTTAG+AGG | - | chr1_2:59797110-59797129 | Msa0081310:intron | 30.0% |
| TTAAGTCTTAATTTCCTGTC+AGG | - | chr1_2:59797460-59797479 | Msa0081310:CDS | 30.0% | |
| ATGCTCTTTAATGAACAAAC+TGG | + | chr1_2:59797640-59797659 | None:intergenic | 30.0% | |
| TACTTACCTAAAAAGTGACA+TGG | - | chr1_2:59797890-59797909 | Msa0081310:intron | 30.0% | |
| ! | GAGAGATTACTTCTTTTATG+TGG | - | chr1_2:59797912-59797931 | Msa0081310:intron | 30.0% |
| !!! | CTATAGATTTTTTTACCCCT+AGG | - | chr1_2:59797941-59797960 | Msa0081310:intron | 30.0% |
| TTCTATCTATGCATCATATG+TGG | - | chr1_2:59798093-59798112 | Msa0081310:intron | 30.0% | |
| ! | AGTAACAACATATTGATGAC+AGG | - | chr1_2:59798172-59798191 | Msa0081310:exon | 30.0% |
| !! | AGAAGCATTACCTGAAATAT+GGG | - | chr1_2:59798256-59798275 | Msa0081310:intron | 30.0% |
| AATATACCGAACGAAATTAC+TGG | - | chr1_2:59798552-59798571 | Msa0081310:intron | 30.0% | |
| ATATACCGAACGAAATTACT+GGG | - | chr1_2:59798553-59798572 | Msa0081310:intron | 30.0% | |
| AAACTAAAGGAAACAATACC+TGG | + | chr1_2:59796399-59796418 | None:intergenic | 30.0% | |
| TGATCACAGAATTAAATGCT+AGG | + | chr1_2:59796578-59796597 | None:intergenic | 30.0% | |
| CAACAAGTATGTCTTTCTTA+TGG | - | chr1_2:59796596-59796615 | Msa0081310:three_prime_UTR | 30.0% | |
| GTCTTTCTTATGGTCAAATT+TGG | - | chr1_2:59796606-59796625 | Msa0081310:three_prime_UTR | 30.0% | |
| !! | TCTTTGAAACGTACTTTGTT+AGG | - | chr1_2:59796660-59796679 | Msa0081310:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGTTCTTTCTCCA+AGG | + | chr1_2:59796795-59796814 | None:intergenic | 30.0% |
| !!! | GCACTCATAGTTTATTTTAG+AGG | - | chr1_2:59797110-59797129 | Msa0081310:intron | 30.0% |
| TTAAGTCTTAATTTCCTGTC+AGG | - | chr1_2:59797460-59797479 | Msa0081310:CDS | 30.0% | |
| ATGCTCTTTAATGAACAAAC+TGG | + | chr1_2:59797640-59797659 | None:intergenic | 30.0% | |
| TACTTACCTAAAAAGTGACA+TGG | - | chr1_2:59797890-59797909 | Msa0081310:intron | 30.0% | |
| ! | GAGAGATTACTTCTTTTATG+TGG | - | chr1_2:59797912-59797931 | Msa0081310:intron | 30.0% |
| !!! | CTATAGATTTTTTTACCCCT+AGG | - | chr1_2:59797941-59797960 | Msa0081310:intron | 30.0% |
| TTCTATCTATGCATCATATG+TGG | - | chr1_2:59798093-59798112 | Msa0081310:intron | 30.0% | |
| ! | AGTAACAACATATTGATGAC+AGG | - | chr1_2:59798172-59798191 | Msa0081310:exon | 30.0% |
| !! | AGAAGCATTACCTGAAATAT+GGG | - | chr1_2:59798256-59798275 | Msa0081310:intron | 30.0% |
| AATATACCGAACGAAATTAC+TGG | - | chr1_2:59798552-59798571 | Msa0081310:intron | 30.0% | |
| ATATACCGAACGAAATTACT+GGG | - | chr1_2:59798553-59798572 | Msa0081310:intron | 30.0% | |
| AATACCTGGACCTTAAACTA+TGG | + | chr1_2:59796385-59796404 | None:intergenic | 35.0% | |
| TTCCATTCCACCTTTCATTA+AGG | - | chr1_2:59796429-59796448 | Msa0081310:three_prime_UTR | 35.0% | |
| ATCAAGACCTTAATGAAAGG+TGG | + | chr1_2:59796439-59796458 | None:intergenic | 35.0% | |
| AGTAACGTTGTCCATCATTA+TGG | + | chr1_2:59796504-59796523 | None:intergenic | 35.0% | |
| !! | GTGTTGATCGCTTAGATTTT+TGG | - | chr1_2:59796630-59796649 | Msa0081310:three_prime_UTR | 35.0% |
| TAAGATCTCAAAACTTGCCT+TGG | - | chr1_2:59796775-59796794 | Msa0081310:CDS | 35.0% | |
| GATTCAAAGCTCTTTCAAGA+TGG | - | chr1_2:59796846-59796865 | Msa0081310:intron | 35.0% | |
| CTTTCAAGATGGATACTCAA+AGG | - | chr1_2:59796857-59796876 | Msa0081310:intron | 35.0% | |
| !! | AAATACGAGTGCTTGCTTTT+TGG | - | chr1_2:59796892-59796911 | Msa0081310:intron | 35.0% |
| !!! | TGCTTGCTTTTTGGTATGAA+TGG | - | chr1_2:59796901-59796920 | Msa0081310:intron | 35.0% |
| TTGATTATGGTTCCACATGT+TGG | - | chr1_2:59797006-59797025 | Msa0081310:CDS | 35.0% | |
| TATCTGTTGTTACCAACATG+TGG | + | chr1_2:59797021-59797040 | None:intergenic | 35.0% | |
| !! | CATGTTGGTAACAACAGATA+TGG | - | chr1_2:59797021-59797040 | Msa0081310:intron | 35.0% |
| AATTGATCCCTAAGCTCAAT+GGG | + | chr1_2:59797060-59797079 | None:intergenic | 35.0% | |
| AAATTGATCCCTAAGCTCAA+TGG | + | chr1_2:59797061-59797080 | None:intergenic | 35.0% | |
| ATTGAGCTTAGGGATCAATT+TGG | - | chr1_2:59797060-59797079 | Msa0081310:intron | 35.0% | |
| CTTGTTTACAGAGCATATGT+TGG | - | chr1_2:59797251-59797270 | Msa0081310:CDS | 35.0% | |
| TATAGTACCAAAGATGTGTC+TGG | - | chr1_2:59797296-59797315 | Msa0081310:CDS | 35.0% | |
| TACAAATCCAGACACATCTT+TGG | + | chr1_2:59797306-59797325 | None:intergenic | 35.0% | |
| ! | CTGGATTTGTATCTAGAACA+TGG | - | chr1_2:59797315-59797334 | Msa0081310:CDS | 35.0% |
| ! | TCTAGAACATGGAACAACTA+TGG | - | chr1_2:59797326-59797345 | Msa0081310:CDS | 35.0% |
| ATTGTCAAATTCGTAGCCAA+GGG | + | chr1_2:59797486-59797505 | None:intergenic | 35.0% | |
| GTAAAATCGTACGTGGAAAA+AGG | - | chr1_2:59797600-59797619 | Msa0081310:intron | 35.0% | |
| AATTCTAATAGCAGCCTCAA+AGG | + | chr1_2:59797835-59797854 | None:intergenic | 35.0% | |
| !!! | ATCTCTCCATGTCACTTTTT+AGG | + | chr1_2:59797899-59797918 | None:intergenic | 35.0% |
| TTCCAAGAGTTTCAAACCTA+GGG | + | chr1_2:59797960-59797979 | None:intergenic | 35.0% | |
| ATTCCAAGAGTTTCAAACCT+AGG | + | chr1_2:59797961-59797980 | None:intergenic | 35.0% | |
| AGTGTTAGAAATGTTGCAAG+CGG | - | chr1_2:59798029-59798048 | Msa0081310:intron | 35.0% | |
| ! | AACAACATATTGATGACAGG+TGG | - | chr1_2:59798175-59798194 | Msa0081310:exon | 35.0% |
| ! | ACAACATATTGATGACAGGT+GGG | - | chr1_2:59798176-59798195 | Msa0081310:exon | 35.0% |
| !! | GAGAAGCATTACCTGAAATA+TGG | - | chr1_2:59798255-59798274 | Msa0081310:intron | 35.0% |
| !! | GAGATTGGATCATTTGTTGT+TGG | + | chr1_2:59798298-59798317 | None:intergenic | 35.0% |
| ATCGAAGCAAAACTTATGCA+TGG | + | chr1_2:59798340-59798359 | None:intergenic | 35.0% | |
| ! | TAATTTTGTAATGGCCTCCA+TGG | - | chr1_2:59798435-59798454 | Msa0081310:intron | 35.0% |
| TTGCAATTGGCATCACAAAA+TGG | - | chr1_2:59798484-59798503 | Msa0081310:intron | 35.0% | |
| AGTATACCTTGCACAAACTA+GGG | + | chr1_2:59798624-59798643 | None:intergenic | 35.0% | |
| TAGTATACCTTGCACAAACT+AGG | + | chr1_2:59798625-59798644 | None:intergenic | 35.0% | |
| AATACCTGGACCTTAAACTA+TGG | + | chr1_2:59796385-59796404 | None:intergenic | 35.0% | |
| TTCCATTCCACCTTTCATTA+AGG | - | chr1_2:59796429-59796448 | Msa0081310:three_prime_UTR | 35.0% | |
| ATCAAGACCTTAATGAAAGG+TGG | + | chr1_2:59796439-59796458 | None:intergenic | 35.0% | |
| AGTAACGTTGTCCATCATTA+TGG | + | chr1_2:59796504-59796523 | None:intergenic | 35.0% | |
| !! | GTGTTGATCGCTTAGATTTT+TGG | - | chr1_2:59796630-59796649 | Msa0081310:three_prime_UTR | 35.0% |
| TAAGATCTCAAAACTTGCCT+TGG | - | chr1_2:59796775-59796794 | Msa0081310:CDS | 35.0% | |
| GATTCAAAGCTCTTTCAAGA+TGG | - | chr1_2:59796846-59796865 | Msa0081310:intron | 35.0% | |
| CTTTCAAGATGGATACTCAA+AGG | - | chr1_2:59796857-59796876 | Msa0081310:intron | 35.0% | |
| !! | AAATACGAGTGCTTGCTTTT+TGG | - | chr1_2:59796892-59796911 | Msa0081310:intron | 35.0% |
| !!! | TGCTTGCTTTTTGGTATGAA+TGG | - | chr1_2:59796901-59796920 | Msa0081310:intron | 35.0% |
| TTGATTATGGTTCCACATGT+TGG | - | chr1_2:59797006-59797025 | Msa0081310:CDS | 35.0% | |
| TATCTGTTGTTACCAACATG+TGG | + | chr1_2:59797021-59797040 | None:intergenic | 35.0% | |
| !! | CATGTTGGTAACAACAGATA+TGG | - | chr1_2:59797021-59797040 | Msa0081310:intron | 35.0% |
| AATTGATCCCTAAGCTCAAT+GGG | + | chr1_2:59797060-59797079 | None:intergenic | 35.0% | |
| AAATTGATCCCTAAGCTCAA+TGG | + | chr1_2:59797061-59797080 | None:intergenic | 35.0% | |
| ATTGAGCTTAGGGATCAATT+TGG | - | chr1_2:59797060-59797079 | Msa0081310:intron | 35.0% | |
| CTTGTTTACAGAGCATATGT+TGG | - | chr1_2:59797251-59797270 | Msa0081310:CDS | 35.0% | |
| TATAGTACCAAAGATGTGTC+TGG | - | chr1_2:59797296-59797315 | Msa0081310:CDS | 35.0% | |
| TACAAATCCAGACACATCTT+TGG | + | chr1_2:59797306-59797325 | None:intergenic | 35.0% | |
| ! | CTGGATTTGTATCTAGAACA+TGG | - | chr1_2:59797315-59797334 | Msa0081310:CDS | 35.0% |
| ! | TCTAGAACATGGAACAACTA+TGG | - | chr1_2:59797326-59797345 | Msa0081310:CDS | 35.0% |
| ATTGTCAAATTCGTAGCCAA+GGG | + | chr1_2:59797486-59797505 | None:intergenic | 35.0% | |
| GTAAAATCGTACGTGGAAAA+AGG | - | chr1_2:59797600-59797619 | Msa0081310:intron | 35.0% | |
| AATTCTAATAGCAGCCTCAA+AGG | + | chr1_2:59797835-59797854 | None:intergenic | 35.0% | |
| !!! | ATCTCTCCATGTCACTTTTT+AGG | + | chr1_2:59797899-59797918 | None:intergenic | 35.0% |
| TTCCAAGAGTTTCAAACCTA+GGG | + | chr1_2:59797960-59797979 | None:intergenic | 35.0% | |
| ATTCCAAGAGTTTCAAACCT+AGG | + | chr1_2:59797961-59797980 | None:intergenic | 35.0% | |
| AGTGTTAGAAATGTTGCAAG+CGG | - | chr1_2:59798029-59798048 | Msa0081310:intron | 35.0% | |
| ! | AACAACATATTGATGACAGG+TGG | - | chr1_2:59798175-59798194 | Msa0081310:exon | 35.0% |
| ! | ACAACATATTGATGACAGGT+GGG | - | chr1_2:59798176-59798195 | Msa0081310:exon | 35.0% |
| !! | GAGAAGCATTACCTGAAATA+TGG | - | chr1_2:59798255-59798274 | Msa0081310:intron | 35.0% |
| !! | GAGATTGGATCATTTGTTGT+TGG | + | chr1_2:59798298-59798317 | None:intergenic | 35.0% |
| ATCGAAGCAAAACTTATGCA+TGG | + | chr1_2:59798340-59798359 | None:intergenic | 35.0% | |
| ! | TAATTTTGTAATGGCCTCCA+TGG | - | chr1_2:59798435-59798454 | Msa0081310:intron | 35.0% |
| TTGCAATTGGCATCACAAAA+TGG | - | chr1_2:59798484-59798503 | Msa0081310:intron | 35.0% | |
| AGTATACCTTGCACAAACTA+GGG | + | chr1_2:59798624-59798643 | None:intergenic | 35.0% | |
| TAGTATACCTTGCACAAACT+AGG | + | chr1_2:59798625-59798644 | None:intergenic | 35.0% | |
| ! | AACACCATAGTTTAAGGTCC+AGG | - | chr1_2:59796378-59796397 | Msa0081310:three_prime_UTR | 40.0% |
| GACCTTAATGAAAGGTGGAA+TGG | + | chr1_2:59796434-59796453 | None:intergenic | 40.0% | |
| ATGGATACTCAAAGGATTGC+TGG | - | chr1_2:59796865-59796884 | Msa0081310:intron | 40.0% | |
| AACAACTATGGCAGGAATGA+AGG | - | chr1_2:59797338-59797357 | Msa0081310:CDS | 40.0% | |
| ! | GGAATGAAGGTATGCAGATT+TGG | - | chr1_2:59797351-59797370 | Msa0081310:intron | 40.0% |
| CATTGTCAAATTCGTAGCCA+AGG | + | chr1_2:59797487-59797506 | None:intergenic | 40.0% | |
| GAGTTTCATGCTTATGTGCA+TGG | - | chr1_2:59797509-59797528 | Msa0081310:CDS | 40.0% | |
| ! | TCTGGCTTCAGTTTCTCATA+TGG | + | chr1_2:59797542-59797561 | None:intergenic | 40.0% |
| TGAAGCCAGATTTCGTGTTA+AGG | - | chr1_2:59797552-59797571 | Msa0081310:intron | 40.0% | |
| AGGTTCCTTAACACGAAATC+TGG | + | chr1_2:59797560-59797579 | None:intergenic | 40.0% | |
| !! | TTCGTTGGTAGGAGTTGATA+GGG | + | chr1_2:59797788-59797807 | None:intergenic | 40.0% |
| ! | ATTCGTTGGTAGGAGTTGAT+AGG | + | chr1_2:59797789-59797808 | None:intergenic | 40.0% |
| TCCAAGAGTTTCAAACCTAG+GGG | + | chr1_2:59797959-59797978 | None:intergenic | 40.0% | |
| TATGAATGCTGTTCAGAGCA+TGG | + | chr1_2:59798229-59798248 | None:intergenic | 40.0% | |
| AGCATTACCTGAAATATGGG+AGG | - | chr1_2:59798259-59798278 | Msa0081310:intron | 40.0% | |
| TCTTCAACCTCCCATATTTC+AGG | + | chr1_2:59798269-59798288 | None:intergenic | 40.0% | |
| AGATAGACAAAACTCTGCTG+AGG | + | chr1_2:59798405-59798424 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr1_2:59798561-59798580 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr1_2:59798593-59798612 | Msa0081310:intron | 40.0% |
| ! | AACACCATAGTTTAAGGTCC+AGG | - | chr1_2:59796378-59796397 | Msa0081310:three_prime_UTR | 40.0% |
| GACCTTAATGAAAGGTGGAA+TGG | + | chr1_2:59796434-59796453 | None:intergenic | 40.0% | |
| ATGGATACTCAAAGGATTGC+TGG | - | chr1_2:59796865-59796884 | Msa0081310:intron | 40.0% | |
| AACAACTATGGCAGGAATGA+AGG | - | chr1_2:59797338-59797357 | Msa0081310:CDS | 40.0% | |
| ! | GGAATGAAGGTATGCAGATT+TGG | - | chr1_2:59797351-59797370 | Msa0081310:intron | 40.0% |
| CATTGTCAAATTCGTAGCCA+AGG | + | chr1_2:59797487-59797506 | None:intergenic | 40.0% | |
| GAGTTTCATGCTTATGTGCA+TGG | - | chr1_2:59797509-59797528 | Msa0081310:CDS | 40.0% | |
| ! | TCTGGCTTCAGTTTCTCATA+TGG | + | chr1_2:59797542-59797561 | None:intergenic | 40.0% |
| TGAAGCCAGATTTCGTGTTA+AGG | - | chr1_2:59797552-59797571 | Msa0081310:intron | 40.0% | |
| AGGTTCCTTAACACGAAATC+TGG | + | chr1_2:59797560-59797579 | None:intergenic | 40.0% | |
| !! | TTCGTTGGTAGGAGTTGATA+GGG | + | chr1_2:59797788-59797807 | None:intergenic | 40.0% |
| ! | ATTCGTTGGTAGGAGTTGAT+AGG | + | chr1_2:59797789-59797808 | None:intergenic | 40.0% |
| TCCAAGAGTTTCAAACCTAG+GGG | + | chr1_2:59797959-59797978 | None:intergenic | 40.0% | |
| TATGAATGCTGTTCAGAGCA+TGG | + | chr1_2:59798229-59798248 | None:intergenic | 40.0% | |
| AGCATTACCTGAAATATGGG+AGG | - | chr1_2:59798259-59798278 | Msa0081310:intron | 40.0% | |
| TCTTCAACCTCCCATATTTC+AGG | + | chr1_2:59798269-59798288 | None:intergenic | 40.0% | |
| AGATAGACAAAACTCTGCTG+AGG | + | chr1_2:59798405-59798424 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr1_2:59798561-59798580 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr1_2:59798593-59798612 | Msa0081310:intron | 40.0% |
| ACTCTCTACCCATTGAGCTT+AGG | - | chr1_2:59797049-59797068 | Msa0081310:intron | 45.0% | |
| CTCTCTACCCATTGAGCTTA+GGG | - | chr1_2:59797050-59797069 | Msa0081310:intron | 45.0% | |
| GCATGTCGCAAGAACATACA+AGG | - | chr1_2:59797082-59797101 | Msa0081310:intron | 45.0% | |
| GAACATGGAACAACTATGGC+AGG | - | chr1_2:59797330-59797349 | Msa0081310:CDS | 45.0% | |
| TTAATTTCCTGTCAGGCCCT+TGG | - | chr1_2:59797467-59797486 | Msa0081310:CDS | 45.0% | |
| ! | TACGATTTTACGCTGAGGCA+TGG | + | chr1_2:59797591-59797610 | None:intergenic | 45.0% |
| ! | TGGCTTGGAAGATTGCTTTG+AGG | - | chr1_2:59797737-59797756 | Msa0081310:CDS | 45.0% |
| GGCTTGGAAGATTGCTTTGA+GGG | - | chr1_2:59797738-59797757 | Msa0081310:CDS | 45.0% | |
| TTTGCAGAGGATTCGTTGGT+AGG | + | chr1_2:59797799-59797818 | None:intergenic | 45.0% | |
| ! | ATGGTTTGCAGAGGATTCGT+TGG | + | chr1_2:59797803-59797822 | None:intergenic | 45.0% |
| AATCCTCTGCAAACCATCTG+TGG | - | chr1_2:59797806-59797825 | Msa0081310:intron | 45.0% | |
| ! | ACCCCTAGGTTTGAAACTCT+TGG | - | chr1_2:59797955-59797974 | Msa0081310:CDS | 45.0% |
| CAAAACTTATGCATGGACCG+TGG | + | chr1_2:59798333-59798352 | None:intergenic | 45.0% | |
| ATTTAAGCACCACCATGCCA+TGG | + | chr1_2:59798455-59798474 | None:intergenic | 45.0% | |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr1_2:59798589-59798608 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr1_2:59798663-59798682 | None:intergenic | 45.0% |
| ACTCTCTACCCATTGAGCTT+AGG | - | chr1_2:59797049-59797068 | Msa0081310:intron | 45.0% | |
| CTCTCTACCCATTGAGCTTA+GGG | - | chr1_2:59797050-59797069 | Msa0081310:intron | 45.0% | |
| GCATGTCGCAAGAACATACA+AGG | - | chr1_2:59797082-59797101 | Msa0081310:intron | 45.0% | |
| GAACATGGAACAACTATGGC+AGG | - | chr1_2:59797330-59797349 | Msa0081310:CDS | 45.0% | |
| TTAATTTCCTGTCAGGCCCT+TGG | - | chr1_2:59797467-59797486 | Msa0081310:CDS | 45.0% | |
| ! | TACGATTTTACGCTGAGGCA+TGG | + | chr1_2:59797591-59797610 | None:intergenic | 45.0% |
| ! | TGGCTTGGAAGATTGCTTTG+AGG | - | chr1_2:59797737-59797756 | Msa0081310:CDS | 45.0% |
| GGCTTGGAAGATTGCTTTGA+GGG | - | chr1_2:59797738-59797757 | Msa0081310:CDS | 45.0% | |
| TTTGCAGAGGATTCGTTGGT+AGG | + | chr1_2:59797799-59797818 | None:intergenic | 45.0% | |
| ! | ATGGTTTGCAGAGGATTCGT+TGG | + | chr1_2:59797803-59797822 | None:intergenic | 45.0% |
| AATCCTCTGCAAACCATCTG+TGG | - | chr1_2:59797806-59797825 | Msa0081310:intron | 45.0% | |
| ! | ACCCCTAGGTTTGAAACTCT+TGG | - | chr1_2:59797955-59797974 | Msa0081310:CDS | 45.0% |
| CAAAACTTATGCATGGACCG+TGG | + | chr1_2:59798333-59798352 | None:intergenic | 45.0% | |
| ATTTAAGCACCACCATGCCA+TGG | + | chr1_2:59798455-59798474 | None:intergenic | 45.0% | |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr1_2:59798589-59798608 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr1_2:59798663-59798682 | None:intergenic | 45.0% |
| ! | CCACGTACGATTTTACGCTG+AGG | + | chr1_2:59797596-59797615 | None:intergenic | 50.0% |
| CCTCAGCGTAAAATCGTACG+TGG | - | chr1_2:59797593-59797612 | Msa0081310:intron | 50.0% | |
| ATGCGGTTGAAGTTCTCAGC+AGG | - | chr1_2:59797712-59797731 | Msa0081310:CDS | 50.0% | |
| GTTGAAGTTCTCAGCAGGCT+TGG | - | chr1_2:59797717-59797736 | Msa0081310:CDS | 50.0% | |
| ! | CTTCCACAGATGGTTTGCAG+AGG | + | chr1_2:59797812-59797831 | None:intergenic | 50.0% |
| ACCATCTGTGGAAGCCTTTG+AGG | - | chr1_2:59797818-59797837 | Msa0081310:intron | 50.0% | |
| GTTGCAAGCGGAAAAGTAGC+TGG | - | chr1_2:59798041-59798060 | Msa0081310:intron | 50.0% | |
| ! | TTGATGACAGGTGGGTCGAT+CGG | - | chr1_2:59798184-59798203 | Msa0081310:exon | 50.0% |
| TGGCTTCGACTGCAAGAGAT+TGG | + | chr1_2:59798313-59798332 | None:intergenic | 50.0% | |
| ATCTCTTGCAGTCGAAGCCA+CGG | - | chr1_2:59798313-59798332 | Msa0081310:intron | 50.0% | |
| TTGTAATGGCCTCCATGGCA+TGG | - | chr1_2:59798440-59798459 | Msa0081310:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr1_2:59798615-59798634 | Msa0081310:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr1_2:59798657-59798676 | None:intergenic | 50.0% |
| ! | CCACGTACGATTTTACGCTG+AGG | + | chr1_2:59797596-59797615 | None:intergenic | 50.0% |
| CCTCAGCGTAAAATCGTACG+TGG | - | chr1_2:59797593-59797612 | Msa0081310:intron | 50.0% | |
| ATGCGGTTGAAGTTCTCAGC+AGG | - | chr1_2:59797712-59797731 | Msa0081310:CDS | 50.0% | |
| GTTGAAGTTCTCAGCAGGCT+TGG | - | chr1_2:59797717-59797736 | Msa0081310:CDS | 50.0% | |
| ! | CTTCCACAGATGGTTTGCAG+AGG | + | chr1_2:59797812-59797831 | None:intergenic | 50.0% |
| ACCATCTGTGGAAGCCTTTG+AGG | - | chr1_2:59797818-59797837 | Msa0081310:intron | 50.0% | |
| GTTGCAAGCGGAAAAGTAGC+TGG | - | chr1_2:59798041-59798060 | Msa0081310:intron | 50.0% | |
| ! | TTGATGACAGGTGGGTCGAT+CGG | - | chr1_2:59798184-59798203 | Msa0081310:exon | 50.0% |
| TGGCTTCGACTGCAAGAGAT+TGG | + | chr1_2:59798313-59798332 | None:intergenic | 50.0% | |
| ATCTCTTGCAGTCGAAGCCA+CGG | - | chr1_2:59798313-59798332 | Msa0081310:intron | 50.0% | |
| TTGTAATGGCCTCCATGGCA+TGG | - | chr1_2:59798440-59798459 | Msa0081310:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr1_2:59798615-59798634 | Msa0081310:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr1_2:59798657-59798676 | None:intergenic | 50.0% |
| GCTGAGGCATGGAAAGCAGA+AGG | + | chr1_2:59797580-59797599 | None:intergenic | 55.0% | |
| CAACGCAGATCACGCACATG+CGG | - | chr1_2:59797695-59797714 | Msa0081310:CDS | 55.0% | |
| AGTTCTCAGCAGGCTTGGCT+TGG | - | chr1_2:59797722-59797741 | Msa0081310:CDS | 55.0% | |
| GCCTCAAAGGCTTCCACAGA+TGG | + | chr1_2:59797822-59797841 | None:intergenic | 55.0% | |
| GGTCGATCGGATTTAGTGCC+TGG | - | chr1_2:59798197-59798216 | Msa0081310:intron | 55.0% | |
| TTCAGAGCATGGTCAGCACC+AGG | + | chr1_2:59798218-59798237 | None:intergenic | 55.0% | |
| TAATGGCCTCCATGGCATGG+TGG | - | chr1_2:59798443-59798462 | Msa0081310:intron | 55.0% | |
| TAAGCACCACCATGCCATGG+AGG | + | chr1_2:59798452-59798471 | None:intergenic | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr1_2:59798568-59798587 | Msa0081310:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr1_2:59798652-59798671 | None:intergenic | 55.0% |
| GCTGAGGCATGGAAAGCAGA+AGG | + | chr1_2:59797580-59797599 | None:intergenic | 55.0% | |
| CAACGCAGATCACGCACATG+CGG | - | chr1_2:59797695-59797714 | Msa0081310:CDS | 55.0% | |
| AGTTCTCAGCAGGCTTGGCT+TGG | - | chr1_2:59797722-59797741 | Msa0081310:CDS | 55.0% | |
| GCCTCAAAGGCTTCCACAGA+TGG | + | chr1_2:59797822-59797841 | None:intergenic | 55.0% | |
| GGTCGATCGGATTTAGTGCC+TGG | - | chr1_2:59798197-59798216 | Msa0081310:intron | 55.0% | |
| TTCAGAGCATGGTCAGCACC+AGG | + | chr1_2:59798218-59798237 | None:intergenic | 55.0% | |
| TAATGGCCTCCATGGCATGG+TGG | - | chr1_2:59798443-59798462 | Msa0081310:intron | 55.0% | |
| TAAGCACCACCATGCCATGG+AGG | + | chr1_2:59798452-59798471 | None:intergenic | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr1_2:59798568-59798587 | Msa0081310:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr1_2:59798652-59798671 | None:intergenic | 55.0% |
| TTCGTAGCCAAGGGCCTGAC+AGG | + | chr1_2:59797477-59797496 | None:intergenic | 60.0% | |
| CGCATGTGCGTGATCTGCGT+TGG | + | chr1_2:59797697-59797716 | None:intergenic | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr1_2:59798642-59798661 | Msa0081310:intron | 60.0% | |
| TTCGTAGCCAAGGGCCTGAC+AGG | + | chr1_2:59797477-59797496 | None:intergenic | 60.0% | |
| CGCATGTGCGTGATCTGCGT+TGG | + | chr1_2:59797697-59797716 | None:intergenic | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr1_2:59798642-59798661 | Msa0081310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59796361 | 59798691 | 59796361 | ID=Msa0081310;Name=Msa0081310 |
| chr1_2 | mRNA | 59796361 | 59798691 | 59796361 | ID=Msa0081310-mRNA-1;Parent=Msa0081310;Name=Msa0081310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=57|1|1|1|0.71|0.62|8|345|249 |
| chr1_2 | exon | 59796361 | 59796858 | 59796361 | ID=Msa0081310-mRNA-1:exon:19468;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59796973 | 59797038 | 59796973 | ID=Msa0081310-mRNA-1:exon:19467;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59797174 | 59797365 | 59797174 | ID=Msa0081310-mRNA-1:exon:19466;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59797445 | 59797570 | 59797445 | ID=Msa0081310-mRNA-1:exon:19465;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59797693 | 59797790 | 59797693 | ID=Msa0081310-mRNA-1:exon:19464;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59797949 | 59798014 | 59797949 | ID=Msa0081310-mRNA-1:exon:19463;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59798139 | 59798205 | 59798139 | ID=Msa0081310-mRNA-1:exon:19462;Parent=Msa0081310-mRNA-1 |
| chr1_2 | exon | 59798653 | 59798691 | 59798653 | ID=Msa0081310-mRNA-1:exon:19461;Parent=Msa0081310-mRNA-1 |
| chr1_2 | five_prime_UTR | 59798653 | 59798691 | 59798653 | ID=Msa0081310-mRNA-1:five_prime_utr;Parent=Msa0081310-mRNA-1 |
| chr1_2 | five_prime_UTR | 59798188 | 59798205 | 59798188 | ID=Msa0081310-mRNA-1:five_prime_utr;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59798139 | 59798187 | 59798139 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59797949 | 59798014 | 59797949 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59797693 | 59797790 | 59797693 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59797445 | 59797570 | 59797445 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59797174 | 59797365 | 59797174 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59796973 | 59797038 | 59796973 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | CDS | 59796706 | 59796858 | 59796706 | ID=Msa0081310-mRNA-1:cds;Parent=Msa0081310-mRNA-1 |
| chr1_2 | three_prime_UTR | 59796361 | 59796705 | 59796361 | ID=Msa0081310-mRNA-1:three_prime_utr;Parent=Msa0081310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
