Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173620 | sp|Q09893|YAI5_SCHPO | 33.480 | 227 | 136 | 9 | 9 | 226 | 3 | 223 | 9.26e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173620 | I3SRG9 | 97.189 | 249 | 7 | 0 | 1 | 249 | 9 | 257 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024890 | Msa0173620 | 0.824136 | 9.506108e-54 | -8.615850e-47 |
| Msa0034310 | Msa0173620 | 0.991753 | 2.367350e-189 | -8.615850e-47 |
| Msa0081310 | Msa0173620 | 0.997045 | 4.852974e-236 | -8.615850e-47 |
| Msa0106120 | Msa0173620 | 0.802240 | 6.163228e-49 | -8.615850e-47 |
| Msa0139720 | Msa0173620 | 0.814778 | 1.295481e-51 | -8.615850e-47 |
| Msa0173620 | Msa0242700 | 0.861945 | 7.179869e-64 | -8.615850e-47 |
| Msa0173620 | Msa0280950 | 0.806697 | 7.251934e-50 | -8.615850e-47 |
| Msa0173620 | Msa0304990 | -0.809209 | 2.119097e-50 | -8.615850e-47 |
| Msa0173620 | Msa0465970 | -0.817914 | 2.574724e-52 | -8.615850e-47 |
| Msa0173620 | Msa0722930 | -0.819549 | 1.095750e-52 | -8.615850e-47 |
| Msa0173620 | Msa0723140 | -0.813359 | 2.664560e-51 | -8.615850e-47 |
| Msa0173620 | Msa0745460 | 0.812685 | 3.744242e-51 | -8.615850e-47 |
| Msa0173620 | Msa0796430 | 0.820951 | 5.229449e-53 | -8.615850e-47 |
| Msa0173620 | Msa0811000 | -0.805098 | 1.572643e-49 | -8.615850e-47 |
| Msa0173620 | Msa0826650 | -0.800267 | 1.561378e-48 | -8.615850e-47 |
| Msa0173620 | Msa0834270 | 0.841815 | 3.780618e-58 | -8.615850e-47 |
| Msa0173620 | Msa0921080 | -0.814567 | 1.442706e-51 | -8.615850e-47 |
| Msa0173620 | Msa0951720 | -0.818600 | 1.801054e-52 | -8.615850e-47 |
| Msa0173620 | Msa1002990 | 0.999047 | 1.417250e-287 | -8.615850e-47 |
| Msa0173620 | Msa1080790 | -0.819787 | 9.668505e-53 | -8.615850e-47 |
| Msa0173620 | Msa1118930 | -0.813880 | 2.045922e-51 | -8.615850e-47 |
| Msa0173620 | Msa1132560 | 0.818100 | 2.337156e-52 | -8.615850e-47 |
| Msa0173620 | Msa1194940 | -0.800448 | 1.434543e-48 | -8.615850e-47 |
| Msa0173620 | Msa1287160 | -0.817350 | 3.452118e-52 | -8.615850e-47 |
| Msa0173620 | Msa1412760 | 0.978121 | 3.629542e-145 | -8.615850e-47 |
| Msa0173620 | Msa1416470 | 0.998098 | 4.146947e-256 | -8.615850e-47 |
| Msa0173620 | Msa1449670 | 0.989276 | 1.979531e-177 | -8.615850e-47 |
| Msa0173620 | Msa1457070 | -0.825471 | 4.602926e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173620 | MtrunA17_Chr1g0193721 | 97.189 | 249 | 7 | 0 | 1 | 249 | 1 | 249 | 0.0 | 506 |
| Msa0173620 | MtrunA17_Chr7g0238911 | 51.042 | 288 | 93 | 2 | 10 | 249 | 14 | 301 | 2.71e-101 | 296 |
| Msa0173620 | MtrunA17_Chr2g0328451 | 49.129 | 287 | 107 | 3 | 2 | 249 | 5 | 291 | 2.26e-96 | 284 |
| Msa0173620 | MtrunA17_Chr4g0031841 | 50.545 | 275 | 106 | 3 | 4 | 249 | 8 | 281 | 5.05e-96 | 282 |
| Msa0173620 | MtrunA17_Chr4g0009921 | 51.111 | 270 | 87 | 2 | 4 | 228 | 9 | 278 | 1.81e-94 | 279 |
| Msa0173620 | MtrunA17_Chr4g0009961 | 47.751 | 289 | 102 | 1 | 10 | 249 | 12 | 300 | 1.16e-91 | 272 |
| Msa0173620 | MtrunA17_Chr1g0205581 | 48.511 | 235 | 111 | 4 | 11 | 235 | 10 | 244 | 2.17e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173620 | AT3G62040.1 | 71.698 | 212 | 57 | 3 | 41 | 249 | 1 | 212 | 1.64e-107 | 309 |
| Msa0173620 | AT5G59480.4 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0173620 | AT5G59480.5 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0173620 | AT5G59480.3 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0173620 | AT5G59480.1 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa0173620 | AT5G59480.2 | 50.549 | 273 | 103 | 3 | 4 | 245 | 8 | 279 | 4.86e-96 | 283 |
| Msa0173620 | AT5G02230.2 | 52.060 | 267 | 101 | 3 | 10 | 249 | 14 | 280 | 1.64e-88 | 264 |
| Msa0173620 | AT5G02230.1 | 52.060 | 267 | 101 | 3 | 10 | 249 | 14 | 280 | 1.64e-88 | 264 |
| Msa0173620 | AT5G59490.1 | 52.918 | 257 | 104 | 3 | 10 | 249 | 10 | 266 | 7.43e-88 | 261 |
| Msa0173620 | AT5G02230.3 | 52.060 | 267 | 101 | 3 | 10 | 249 | 51 | 317 | 8.78e-88 | 263 |
| Msa0173620 | AT2G32150.1 | 48.649 | 222 | 107 | 2 | 13 | 227 | 8 | 229 | 4.30e-78 | 236 |
| Msa0173620 | AT5G59490.2 | 57.635 | 203 | 74 | 2 | 10 | 200 | 10 | 212 | 4.04e-72 | 219 |
| Msa0173620 | AT2G32150.2 | 49.490 | 196 | 92 | 2 | 12 | 200 | 7 | 202 | 4.01e-67 | 207 |
| Msa0173620 | AT2G32150.3 | 50.286 | 175 | 80 | 2 | 13 | 180 | 8 | 182 | 3.81e-59 | 186 |
Find 79 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACCTCCCATATTTC+AGG | 0.199588 | 1_4:+58943570 | None:intergenic |
| CAATTAAACACCATAGTTTA+AGG | 0.205482 | 1_4:-58945418 | Msa0173620:five_prime_UTR |
| GAGAAGCATTACCTGAAATA+TGG | 0.252058 | 1_4:-58943581 | Msa0173620:CDS |
| ATTGAGCTTAGGGATCAATT+TGG | 0.335151 | 1_4:-58944730 | Msa0173620:CDS |
| AATACCTGGACCTTAAACTA+TGG | 0.336568 | 1_4:+58945408 | None:intergenic |
| ATTCGTTGGTAGGAGTTGAT+AGG | 0.339282 | 1_4:+58944050 | None:intergenic |
| TTGCAATTGGCATCACAAAA+TGG | 0.340643 | 1_4:-58943352 | Msa0173620:three_prime_UTR |
| AGGTTCCTTAACACGAAATC+TGG | 0.347342 | 1_4:+58944279 | None:intergenic |
| AATATACCGAACGAAATTAC+TGG | 0.354237 | 1_4:-58943284 | Msa0173620:three_prime_UTR |
| GGCTTGGAAGATTGCTTTGA+GGG | 0.359868 | 1_4:-58944098 | Msa0173620:CDS |
| ATGGATACTCAAAGGATTGC+TGG | 0.374412 | 1_4:-58944925 | Msa0173620:CDS |
| TGAACTTTGCATTTAATAGT+TGG | 0.387686 | 1_4:+58943326 | None:intergenic |
| ACCATCTGTGGAAGCCTTTG+AGG | 0.394435 | 1_4:-58944018 | Msa0173620:CDS |
| CTCTCTACCCATTGAGCTTA+GGG | 0.404141 | 1_4:-58944740 | Msa0173620:CDS |
| TCTGGCTTCAGTTTCTCATA+TGG | 0.405723 | 1_4:+58944297 | None:intergenic |
| ATATACTCGTAACAGTGATC+TGG | 0.410966 | 1_4:+58943161 | None:intergenic |
| TACAAATCCAGACACATCTT+TGG | 0.424509 | 1_4:+58944529 | None:intergenic |
| AAATGTATGAATCTTGCAAT+TGG | 0.426552 | 1_4:-58943365 | Msa0173620:three_prime_UTR |
| ACTCTCTACCCATTGAGCTT+AGG | 0.439304 | 1_4:-58944741 | Msa0173620:CDS |
| TGAAGCCAGATTTCGTGTTA+AGG | 0.440016 | 1_4:-58944284 | Msa0173620:CDS |
| TTAATTTCCTGTCAGGCCCT+TGG | 0.440659 | 1_4:-58944369 | Msa0173620:intron |
| TGGCTTCGACTGCAAGAGAT+TGG | 0.449210 | 1_4:+58943526 | None:intergenic |
| TGGCTTGGAAGATTGCTTTG+AGG | 0.450052 | 1_4:-58944099 | Msa0173620:CDS |
| TCTAGAACATGGAACAACTA+TGG | 0.451217 | 1_4:-58944506 | Msa0173620:CDS |
| TTCGTTGGTAGGAGTTGATA+GGG | 0.461128 | 1_4:+58944051 | None:intergenic |
| TATAGTACCAAAGATGTGTC+TGG | 0.470960 | 1_4:-58944536 | Msa0173620:CDS |
| AAATTGATCCCTAAGCTCAA+TGG | 0.472577 | 1_4:+58944732 | None:intergenic |
| AGTTCTCAGCAGGCTTGGCT+TGG | 0.483634 | 1_4:-58944114 | Msa0173620:CDS |
| GGTCGATCGGATTTAGTGCC+TGG | 0.483986 | 1_4:-58943639 | Msa0173620:CDS |
| GCCTCAAAGGCTTCCACAGA+TGG | 0.484285 | 1_4:+58944017 | None:intergenic |
| GTTGAAGTTCTCAGCAGGCT+TGG | 0.485005 | 1_4:-58944119 | Msa0173620:CDS |
| AATTGATCCCTAAGCTCAAT+GGG | 0.491033 | 1_4:+58944733 | None:intergenic |
| AACACCATAGTTTAAGGTCC+AGG | 0.491638 | 1_4:-58945412 | Msa0173620:intron |
| GTTGCAAGCGGAAAAGTAGC+TGG | 0.495148 | 1_4:-58943795 | Msa0173620:CDS |
| TAGTCTACCTTGCACAAACT+AGG | 0.497605 | 1_4:+58943214 | None:intergenic |
| AGAAGCATTACCTGAAATAT+GGG | 0.503577 | 1_4:-58943580 | Msa0173620:CDS |
| CTATCAACCACGCCGTCTCC+AGG | 0.503877 | 1_4:-58943194 | Msa0173620:three_prime_UTR |
| GAGATTGGATCATTTGTTGT+TGG | 0.507343 | 1_4:+58943541 | None:intergenic |
| GATTCAAAGCTCTTTCAAGA+TGG | 0.508100 | 1_4:-58944944 | Msa0173620:exon |
| GCTTTCTTTAAGACGTTTCG+CGG | 0.509643 | 1_4:-58943243 | Msa0173620:three_prime_UTR |
| CTTGTTTACAGAGCATATGT+TGG | 0.516527 | 1_4:-58944581 | Msa0173620:intron |
| AACAACTATGGCAGGAATGA+AGG | 0.518265 | 1_4:-58944494 | Msa0173620:intron |
| ATGCGGTTGAAGTTCTCAGC+AGG | 0.526884 | 1_4:-58944124 | Msa0173620:CDS |
| TTTGCAGAGGATTCGTTGGT+AGG | 0.536737 | 1_4:+58944040 | None:intergenic |
| GAACATGGAACAACTATGGC+AGG | 0.541348 | 1_4:-58944502 | Msa0173620:CDS |
| ACTCACCCAGTAATTTCGTT+CGG | 0.548375 | 1_4:+58943278 | None:intergenic |
| AATCCTCTGCAAACCATCTG+TGG | 0.549541 | 1_4:-58944030 | Msa0173620:CDS |
| CATTGTCAAATTCGTAGCCA+AGG | 0.549744 | 1_4:+58944352 | None:intergenic |
| TTCAGAGCATGGTCAGCACC+AGG | 0.555322 | 1_4:+58943621 | None:intergenic |
| ATCGAAGCAAAACTTATGCA+TGG | 0.557183 | 1_4:+58943499 | None:intergenic |
| ATCTCTTGCAGTCGAAGCCA+CGG | 0.558687 | 1_4:-58943523 | Msa0173620:CDS |
| ATGGTTTGCAGAGGATTCGT+TGG | 0.560194 | 1_4:+58944036 | None:intergenic |
| TATACTCGTAACAGTGATCT+GGG | 0.563092 | 1_4:+58943162 | None:intergenic |
| GAGTTTCATGCTTATGTGCA+TGG | 0.564136 | 1_4:-58944327 | Msa0173620:CDS |
| TTACTGGGTGAGTCACGACC+AGG | 0.566531 | 1_4:-58943268 | Msa0173620:three_prime_UTR |
| CTGGATTTGTATCTAGAACA+TGG | 0.570926 | 1_4:-58944517 | Msa0173620:CDS |
| TTGATGACAGGTGGGTCGAT+CGG | 0.573116 | 1_4:-58943652 | Msa0173620:intron |
| AGTCTACCTTGCACAAACTA+GGG | 0.574113 | 1_4:+58943215 | None:intergenic |
| TATGAATGCTGTTCAGAGCA+TGG | 0.576032 | 1_4:+58943610 | None:intergenic |
| CTTTCAAGATGGATACTCAA+AGG | 0.580368 | 1_4:-58944933 | Msa0173620:exon |
| CGCATGTGCGTGATCTGCGT+TGG | 0.594208 | 1_4:+58944142 | None:intergenic |
| CTTCCACAGATGGTTTGCAG+AGG | 0.599046 | 1_4:+58944027 | None:intergenic |
| AATTCTAATAGCAGCCTCAA+AGG | 0.600461 | 1_4:+58944004 | None:intergenic |
| ATATACCGAACGAAATTACT+GGG | 0.604916 | 1_4:-58943283 | Msa0173620:three_prime_UTR |
| ATTTAAGCACCACCATGCCA+TGG | 0.607196 | 1_4:+58943384 | None:intergenic |
| TTGTAATGGCCTCCATGGCA+TGG | 0.611695 | 1_4:-58943396 | Msa0173620:three_prime_UTR |
| GCATGTCGCAAGAACATACA+AGG | 0.614967 | 1_4:-58944708 | Msa0173620:intron |
| ATTGTCAAATTCGTAGCCAA+GGG | 0.618916 | 1_4:+58944353 | None:intergenic |
| AGTGTTAGAAATGTTGCAAG+CGG | 0.624326 | 1_4:-58943807 | Msa0173620:CDS |
| GCTGAGGCATGGAAAGCAGA+AGG | 0.639829 | 1_4:+58944259 | None:intergenic |
| AGATAGACAAAACTCTGCTG+AGG | 0.650985 | 1_4:+58943434 | None:intergenic |
| CAACGCAGATCACGCACATG+CGG | 0.653925 | 1_4:-58944141 | Msa0173620:CDS |
| GCACTACCCTAGTTTGTGCA+AGG | 0.661073 | 1_4:-58943221 | Msa0173620:three_prime_UTR |
| ACGTCTTAAAGAAAGCGACC+TGG | 0.675817 | 1_4:+58943250 | None:intergenic |
| AGCATTACCTGAAATATGGG+AGG | 0.676770 | 1_4:-58943577 | Msa0173620:CDS |
| TAATGGCCTCCATGGCATGG+TGG | 0.680313 | 1_4:-58943393 | Msa0173620:three_prime_UTR |
| TAAGCACCACCATGCCATGG+AGG | 0.695428 | 1_4:+58943387 | None:intergenic |
| CAAAACTTATGCATGGACCG+TGG | 0.699924 | 1_4:+58943506 | None:intergenic |
| TATATCTTACAATAACAGTG+TGG | 0.713748 | 1_4:+58943769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATGTATTATTTTATTATA+TGG | - | chr1_4:58943283-58943302 | Msa0173620:three_prime_UTR | 10.0% |
| !!! | TTAAAAGTAAATATTGATTA+TGG | - | chr1_4:58943799-58943818 | Msa0173620:CDS | 10.0% |
| !!! | TGATGTATTATTTTATTATA+TGG | - | chr1_4:58943283-58943302 | Msa0173620:three_prime_UTR | 10.0% |
| !!! | TTAAAAGTAAATATTGATTA+TGG | - | chr1_4:58943799-58943818 | Msa0173620:CDS | 10.0% |
| !!! | GAAAAGTATATAAAAACTAA+AGG | + | chr1_4:58943218-58943237 | None:intergenic | 15.0% |
| !!! | AAAGAATATTTTGAGTATTA+CGG | + | chr1_4:58944423-58944442 | None:intergenic | 15.0% |
| !!! | AATCTACAATAATTTTGTAA+TGG | - | chr1_4:58945186-58945205 | Msa0173620:intron | 15.0% |
| !!! | GAAAAGTATATAAAAACTAA+AGG | + | chr1_4:58943218-58943237 | None:intergenic | 15.0% |
| !!! | AAAGAATATTTTGAGTATTA+CGG | + | chr1_4:58944423-58944442 | None:intergenic | 15.0% |
| !!! | AATCTACAATAATTTTGTAA+TGG | - | chr1_4:58945186-58945205 | Msa0173620:intron | 15.0% |
| !! | TAATAATCTTGCATGAATAT+TGG | - | chr1_4:58943731-58943750 | Msa0173620:intron | 20.0% |
| !! | TTCTATATGAAAATTTGAAG+AGG | + | chr1_4:58943774-58943793 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTTCATATAGA+AGG | - | chr1_4:58943773-58943792 | Msa0173620:intron | 20.0% |
| !! | TAATAATCTTGCATGAATAT+TGG | - | chr1_4:58943731-58943750 | Msa0173620:intron | 20.0% |
| !! | TTCTATATGAAAATTTGAAG+AGG | + | chr1_4:58943774-58943793 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTTCATATAGA+AGG | - | chr1_4:58943773-58943792 | Msa0173620:intron | 20.0% |
| ! | CAATTAAACACCATAGTTTA+AGG | - | chr1_4:58943178-58943197 | Msa0173620:three_prime_UTR | 25.0% |
| ! | AATATCAAGACCTTAATGAA+AGG | + | chr1_4:58943248-58943267 | None:intergenic | 25.0% |
| ! | TATTATATGGTCCATAATGA+TGG | - | chr1_4:58943296-58943315 | Msa0173620:three_prime_UTR | 25.0% |
| ! | TTGATCATCAATCATTTCAT+GGG | + | chr1_4:58943357-58943376 | None:intergenic | 25.0% |
| ! | TTTGATCATCAATCATTTCA+TGG | + | chr1_4:58943358-58943377 | None:intergenic | 25.0% |
| !! | CTTTTCTATTTCAGACTTTT+CGG | - | chr1_4:58943508-58943527 | Msa0173620:exon | 25.0% |
| ! | ATATGAAATAATCTGAACAC+TGG | + | chr1_4:58943952-58943971 | None:intergenic | 25.0% |
| ! | AAACAAGATTGATCAACTAT+AGG | + | chr1_4:58944002-58944021 | None:intergenic | 25.0% |
| ! | AGTAAGTCAATAAAAAACTG+TGG | + | chr1_4:58944147-58944166 | None:intergenic | 25.0% |
| !! | ATCAATCTTACTGTTTTCTT+TGG | + | chr1_4:58944630-58944649 | None:intergenic | 25.0% |
| ! | TATATCTTACAATAACAGTG+TGG | + | chr1_4:58944830-58944849 | None:intergenic | 25.0% |
| ! | AAATGTATGAATCTTGCAAT+TGG | - | chr1_4:58945231-58945250 | Msa0173620:intron | 25.0% |
| ! | TGAACTTTGCATTTAATAGT+TGG | + | chr1_4:58945273-58945292 | None:intergenic | 25.0% |
| ! | CAATTAAACACCATAGTTTA+AGG | - | chr1_4:58943178-58943197 | Msa0173620:three_prime_UTR | 25.0% |
| ! | AATATCAAGACCTTAATGAA+AGG | + | chr1_4:58943248-58943267 | None:intergenic | 25.0% |
| ! | TATTATATGGTCCATAATGA+TGG | - | chr1_4:58943296-58943315 | Msa0173620:three_prime_UTR | 25.0% |
| ! | TTGATCATCAATCATTTCAT+GGG | + | chr1_4:58943357-58943376 | None:intergenic | 25.0% |
| ! | TTTGATCATCAATCATTTCA+TGG | + | chr1_4:58943358-58943377 | None:intergenic | 25.0% |
| !! | CTTTTCTATTTCAGACTTTT+CGG | - | chr1_4:58943508-58943527 | Msa0173620:exon | 25.0% |
| ! | ATATGAAATAATCTGAACAC+TGG | + | chr1_4:58943952-58943971 | None:intergenic | 25.0% |
| ! | AAACAAGATTGATCAACTAT+AGG | + | chr1_4:58944002-58944021 | None:intergenic | 25.0% |
| ! | AGTAAGTCAATAAAAAACTG+TGG | + | chr1_4:58944147-58944166 | None:intergenic | 25.0% |
| !! | ATCAATCTTACTGTTTTCTT+TGG | + | chr1_4:58944630-58944649 | None:intergenic | 25.0% |
| ! | TATATCTTACAATAACAGTG+TGG | + | chr1_4:58944830-58944849 | None:intergenic | 25.0% |
| ! | AAATGTATGAATCTTGCAAT+TGG | - | chr1_4:58945231-58945250 | Msa0173620:intron | 25.0% |
| ! | TGAACTTTGCATTTAATAGT+TGG | + | chr1_4:58945273-58945292 | None:intergenic | 25.0% |
| AAACTAAAGGAAACAATACC+TGG | + | chr1_4:58943205-58943224 | None:intergenic | 30.0% | |
| TGATCACAGAATTAAATGCT+AGG | + | chr1_4:58943384-58943403 | None:intergenic | 30.0% | |
| CAACAAGTATGTCTTTCTTA+TGG | - | chr1_4:58943402-58943421 | Msa0173620:three_prime_UTR | 30.0% | |
| GTCTTTCTTATGGTCAAATT+TGG | - | chr1_4:58943412-58943431 | Msa0173620:three_prime_UTR | 30.0% | |
| !! | TCTTTGAAACGTACTTTGTT+AGG | - | chr1_4:58943466-58943485 | Msa0173620:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGTTCTTTCTCCA+AGG | + | chr1_4:58943601-58943620 | None:intergenic | 30.0% |
| !!! | GCACTCATAGTTTATTTTAG+AGG | - | chr1_4:58943916-58943935 | Msa0173620:intron | 30.0% |
| TTAAGTCTTAATTTCCTGTC+AGG | - | chr1_4:58944220-58944239 | Msa0173620:intron | 30.0% | |
| ATGCTCTTTAATGAACAAAC+TGG | + | chr1_4:58944400-58944419 | None:intergenic | 30.0% | |
| TACTTACCTAAAAAGTGACA+TGG | - | chr1_4:58944650-58944669 | Msa0173620:intron | 30.0% | |
| ! | GAGAGATTACTTCTTTTATG+TGG | - | chr1_4:58944672-58944691 | Msa0173620:intron | 30.0% |
| !!! | CTATAGATTTTTTTACCCCT+AGG | - | chr1_4:58944701-58944720 | Msa0173620:intron | 30.0% |
| TTCTATCTATGCATCATATG+TGG | - | chr1_4:58944853-58944872 | Msa0173620:intron | 30.0% | |
| ! | AGTAACAACATATTGATGAC+AGG | - | chr1_4:58944932-58944951 | Msa0173620:exon | 30.0% |
| !! | AGAAGCATTACCTGAAATAT+GGG | - | chr1_4:58945016-58945035 | Msa0173620:intron | 30.0% |
| AATATACCGAACGAAATTAC+TGG | - | chr1_4:58945312-58945331 | Msa0173620:intron | 30.0% | |
| ATATACCGAACGAAATTACT+GGG | - | chr1_4:58945313-58945332 | Msa0173620:intron | 30.0% | |
| AAACTAAAGGAAACAATACC+TGG | + | chr1_4:58943205-58943224 | None:intergenic | 30.0% | |
| TGATCACAGAATTAAATGCT+AGG | + | chr1_4:58943384-58943403 | None:intergenic | 30.0% | |
| CAACAAGTATGTCTTTCTTA+TGG | - | chr1_4:58943402-58943421 | Msa0173620:three_prime_UTR | 30.0% | |
| GTCTTTCTTATGGTCAAATT+TGG | - | chr1_4:58943412-58943431 | Msa0173620:three_prime_UTR | 30.0% | |
| !! | TCTTTGAAACGTACTTTGTT+AGG | - | chr1_4:58943466-58943485 | Msa0173620:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGTTCTTTCTCCA+AGG | + | chr1_4:58943601-58943620 | None:intergenic | 30.0% |
| !!! | GCACTCATAGTTTATTTTAG+AGG | - | chr1_4:58943916-58943935 | Msa0173620:intron | 30.0% |
| TTAAGTCTTAATTTCCTGTC+AGG | - | chr1_4:58944220-58944239 | Msa0173620:intron | 30.0% | |
| ATGCTCTTTAATGAACAAAC+TGG | + | chr1_4:58944400-58944419 | None:intergenic | 30.0% | |
| TACTTACCTAAAAAGTGACA+TGG | - | chr1_4:58944650-58944669 | Msa0173620:intron | 30.0% | |
| ! | GAGAGATTACTTCTTTTATG+TGG | - | chr1_4:58944672-58944691 | Msa0173620:intron | 30.0% |
| !!! | CTATAGATTTTTTTACCCCT+AGG | - | chr1_4:58944701-58944720 | Msa0173620:intron | 30.0% |
| TTCTATCTATGCATCATATG+TGG | - | chr1_4:58944853-58944872 | Msa0173620:intron | 30.0% | |
| ! | AGTAACAACATATTGATGAC+AGG | - | chr1_4:58944932-58944951 | Msa0173620:exon | 30.0% |
| !! | AGAAGCATTACCTGAAATAT+GGG | - | chr1_4:58945016-58945035 | Msa0173620:intron | 30.0% |
| AATATACCGAACGAAATTAC+TGG | - | chr1_4:58945312-58945331 | Msa0173620:intron | 30.0% | |
| ATATACCGAACGAAATTACT+GGG | - | chr1_4:58945313-58945332 | Msa0173620:intron | 30.0% | |
| AATACCTGGACCTTAAACTA+TGG | + | chr1_4:58943191-58943210 | None:intergenic | 35.0% | |
| TTCCATTCCACCTTTCATTA+AGG | - | chr1_4:58943235-58943254 | Msa0173620:three_prime_UTR | 35.0% | |
| ATCAAGACCTTAATGAAAGG+TGG | + | chr1_4:58943245-58943264 | None:intergenic | 35.0% | |
| AGTAACGTTGTCCATCATTA+TGG | + | chr1_4:58943310-58943329 | None:intergenic | 35.0% | |
| !! | GTGTTGATCGCTTAGATTTT+TGG | - | chr1_4:58943436-58943455 | Msa0173620:three_prime_UTR | 35.0% |
| TAAGATCTCAAAACTTGCCT+TGG | - | chr1_4:58943581-58943600 | Msa0173620:CDS | 35.0% | |
| GATTCAAAGCTCTTTCAAGA+TGG | - | chr1_4:58943652-58943671 | Msa0173620:intron | 35.0% | |
| CTTTCAAGATGGATACTCAA+AGG | - | chr1_4:58943663-58943682 | Msa0173620:intron | 35.0% | |
| !! | AAATACGAGTGCTTGCTTTT+TGG | - | chr1_4:58943698-58943717 | Msa0173620:intron | 35.0% |
| !!! | TGCTTGCTTTTTGGTATGAA+TGG | - | chr1_4:58943707-58943726 | Msa0173620:intron | 35.0% |
| TTGATTATGGTTCCACATGT+TGG | - | chr1_4:58943812-58943831 | Msa0173620:CDS | 35.0% | |
| TATCTGTTGTTACCAACATG+TGG | + | chr1_4:58943827-58943846 | None:intergenic | 35.0% | |
| !! | CATGTTGGTAACAACAGATA+TGG | - | chr1_4:58943827-58943846 | Msa0173620:intron | 35.0% |
| AATTGATCCCTAAGCTCAAT+GGG | + | chr1_4:58943866-58943885 | None:intergenic | 35.0% | |
| AAATTGATCCCTAAGCTCAA+TGG | + | chr1_4:58943867-58943886 | None:intergenic | 35.0% | |
| ATTGAGCTTAGGGATCAATT+TGG | - | chr1_4:58943866-58943885 | Msa0173620:intron | 35.0% | |
| CTTGTTTACAGAGCATATGT+TGG | - | chr1_4:58944015-58944034 | Msa0173620:CDS | 35.0% | |
| TATAGTACCAAAGATGTGTC+TGG | - | chr1_4:58944060-58944079 | Msa0173620:CDS | 35.0% | |
| TACAAATCCAGACACATCTT+TGG | + | chr1_4:58944070-58944089 | None:intergenic | 35.0% | |
| ! | CTGGATTTGTATCTAGAACA+TGG | - | chr1_4:58944079-58944098 | Msa0173620:CDS | 35.0% |
| ! | TCTAGAACATGGAACAACTA+TGG | - | chr1_4:58944090-58944109 | Msa0173620:CDS | 35.0% |
| ATTGTCAAATTCGTAGCCAA+GGG | + | chr1_4:58944246-58944265 | None:intergenic | 35.0% | |
| GTAAAATCGTACGTGGAAAA+AGG | - | chr1_4:58944360-58944379 | Msa0173620:intron | 35.0% | |
| AATTCTAATAGCAGCCTCAA+AGG | + | chr1_4:58944595-58944614 | None:intergenic | 35.0% | |
| !!! | ATCTCTCCATGTCACTTTTT+AGG | + | chr1_4:58944659-58944678 | None:intergenic | 35.0% |
| TTCCAAGAGTTTCAAACCTA+GGG | + | chr1_4:58944720-58944739 | None:intergenic | 35.0% | |
| ATTCCAAGAGTTTCAAACCT+AGG | + | chr1_4:58944721-58944740 | None:intergenic | 35.0% | |
| AGTGTTAGAAATGTTGCAAG+CGG | - | chr1_4:58944789-58944808 | Msa0173620:intron | 35.0% | |
| ! | AACAACATATTGATGACAGG+TGG | - | chr1_4:58944935-58944954 | Msa0173620:exon | 35.0% |
| ! | ACAACATATTGATGACAGGT+GGG | - | chr1_4:58944936-58944955 | Msa0173620:exon | 35.0% |
| !! | GAGAAGCATTACCTGAAATA+TGG | - | chr1_4:58945015-58945034 | Msa0173620:intron | 35.0% |
| !! | GAGATTGGATCATTTGTTGT+TGG | + | chr1_4:58945058-58945077 | None:intergenic | 35.0% |
| ATCGAAGCAAAACTTATGCA+TGG | + | chr1_4:58945100-58945119 | None:intergenic | 35.0% | |
| ! | TAATTTTGTAATGGCCTCCA+TGG | - | chr1_4:58945195-58945214 | Msa0173620:intron | 35.0% |
| TTGCAATTGGCATCACAAAA+TGG | - | chr1_4:58945244-58945263 | Msa0173620:intron | 35.0% | |
| AATACCTGGACCTTAAACTA+TGG | + | chr1_4:58943191-58943210 | None:intergenic | 35.0% | |
| TTCCATTCCACCTTTCATTA+AGG | - | chr1_4:58943235-58943254 | Msa0173620:three_prime_UTR | 35.0% | |
| ATCAAGACCTTAATGAAAGG+TGG | + | chr1_4:58943245-58943264 | None:intergenic | 35.0% | |
| AGTAACGTTGTCCATCATTA+TGG | + | chr1_4:58943310-58943329 | None:intergenic | 35.0% | |
| !! | GTGTTGATCGCTTAGATTTT+TGG | - | chr1_4:58943436-58943455 | Msa0173620:three_prime_UTR | 35.0% |
| TAAGATCTCAAAACTTGCCT+TGG | - | chr1_4:58943581-58943600 | Msa0173620:CDS | 35.0% | |
| GATTCAAAGCTCTTTCAAGA+TGG | - | chr1_4:58943652-58943671 | Msa0173620:intron | 35.0% | |
| CTTTCAAGATGGATACTCAA+AGG | - | chr1_4:58943663-58943682 | Msa0173620:intron | 35.0% | |
| !! | AAATACGAGTGCTTGCTTTT+TGG | - | chr1_4:58943698-58943717 | Msa0173620:intron | 35.0% |
| !!! | TGCTTGCTTTTTGGTATGAA+TGG | - | chr1_4:58943707-58943726 | Msa0173620:intron | 35.0% |
| TTGATTATGGTTCCACATGT+TGG | - | chr1_4:58943812-58943831 | Msa0173620:CDS | 35.0% | |
| TATCTGTTGTTACCAACATG+TGG | + | chr1_4:58943827-58943846 | None:intergenic | 35.0% | |
| !! | CATGTTGGTAACAACAGATA+TGG | - | chr1_4:58943827-58943846 | Msa0173620:intron | 35.0% |
| AATTGATCCCTAAGCTCAAT+GGG | + | chr1_4:58943866-58943885 | None:intergenic | 35.0% | |
| AAATTGATCCCTAAGCTCAA+TGG | + | chr1_4:58943867-58943886 | None:intergenic | 35.0% | |
| ATTGAGCTTAGGGATCAATT+TGG | - | chr1_4:58943866-58943885 | Msa0173620:intron | 35.0% | |
| CTTGTTTACAGAGCATATGT+TGG | - | chr1_4:58944015-58944034 | Msa0173620:CDS | 35.0% | |
| TATAGTACCAAAGATGTGTC+TGG | - | chr1_4:58944060-58944079 | Msa0173620:CDS | 35.0% | |
| TACAAATCCAGACACATCTT+TGG | + | chr1_4:58944070-58944089 | None:intergenic | 35.0% | |
| ! | CTGGATTTGTATCTAGAACA+TGG | - | chr1_4:58944079-58944098 | Msa0173620:CDS | 35.0% |
| ! | TCTAGAACATGGAACAACTA+TGG | - | chr1_4:58944090-58944109 | Msa0173620:CDS | 35.0% |
| ATTGTCAAATTCGTAGCCAA+GGG | + | chr1_4:58944246-58944265 | None:intergenic | 35.0% | |
| GTAAAATCGTACGTGGAAAA+AGG | - | chr1_4:58944360-58944379 | Msa0173620:intron | 35.0% | |
| AATTCTAATAGCAGCCTCAA+AGG | + | chr1_4:58944595-58944614 | None:intergenic | 35.0% | |
| !!! | ATCTCTCCATGTCACTTTTT+AGG | + | chr1_4:58944659-58944678 | None:intergenic | 35.0% |
| TTCCAAGAGTTTCAAACCTA+GGG | + | chr1_4:58944720-58944739 | None:intergenic | 35.0% | |
| ATTCCAAGAGTTTCAAACCT+AGG | + | chr1_4:58944721-58944740 | None:intergenic | 35.0% | |
| AGTGTTAGAAATGTTGCAAG+CGG | - | chr1_4:58944789-58944808 | Msa0173620:intron | 35.0% | |
| ! | AACAACATATTGATGACAGG+TGG | - | chr1_4:58944935-58944954 | Msa0173620:exon | 35.0% |
| ! | ACAACATATTGATGACAGGT+GGG | - | chr1_4:58944936-58944955 | Msa0173620:exon | 35.0% |
| !! | GAGAAGCATTACCTGAAATA+TGG | - | chr1_4:58945015-58945034 | Msa0173620:intron | 35.0% |
| !! | GAGATTGGATCATTTGTTGT+TGG | + | chr1_4:58945058-58945077 | None:intergenic | 35.0% |
| ATCGAAGCAAAACTTATGCA+TGG | + | chr1_4:58945100-58945119 | None:intergenic | 35.0% | |
| ! | TAATTTTGTAATGGCCTCCA+TGG | - | chr1_4:58945195-58945214 | Msa0173620:intron | 35.0% |
| TTGCAATTGGCATCACAAAA+TGG | - | chr1_4:58945244-58945263 | Msa0173620:intron | 35.0% | |
| ! | AACACCATAGTTTAAGGTCC+AGG | - | chr1_4:58943184-58943203 | Msa0173620:three_prime_UTR | 40.0% |
| GACCTTAATGAAAGGTGGAA+TGG | + | chr1_4:58943240-58943259 | None:intergenic | 40.0% | |
| ATGGATACTCAAAGGATTGC+TGG | - | chr1_4:58943671-58943690 | Msa0173620:intron | 40.0% | |
| AACAACTATGGCAGGAATGA+AGG | - | chr1_4:58944102-58944121 | Msa0173620:CDS | 40.0% | |
| ! | GGAATGAAGGTATGCAGATT+TGG | - | chr1_4:58944115-58944134 | Msa0173620:CDS | 40.0% |
| CATTGTCAAATTCGTAGCCA+AGG | + | chr1_4:58944247-58944266 | None:intergenic | 40.0% | |
| GAGTTTCATGCTTATGTGCA+TGG | - | chr1_4:58944269-58944288 | Msa0173620:CDS | 40.0% | |
| ! | TCTGGCTTCAGTTTCTCATA+TGG | + | chr1_4:58944302-58944321 | None:intergenic | 40.0% |
| TGAAGCCAGATTTCGTGTTA+AGG | - | chr1_4:58944312-58944331 | Msa0173620:CDS | 40.0% | |
| AGGTTCCTTAACACGAAATC+TGG | + | chr1_4:58944320-58944339 | None:intergenic | 40.0% | |
| !! | TTCGTTGGTAGGAGTTGATA+GGG | + | chr1_4:58944548-58944567 | None:intergenic | 40.0% |
| ! | ATTCGTTGGTAGGAGTTGAT+AGG | + | chr1_4:58944549-58944568 | None:intergenic | 40.0% |
| TCCAAGAGTTTCAAACCTAG+GGG | + | chr1_4:58944719-58944738 | None:intergenic | 40.0% | |
| TATGAATGCTGTTCAGAGCA+TGG | + | chr1_4:58944989-58945008 | None:intergenic | 40.0% | |
| AGCATTACCTGAAATATGGG+AGG | - | chr1_4:58945019-58945038 | Msa0173620:intron | 40.0% | |
| TCTTCAACCTCCCATATTTC+AGG | + | chr1_4:58945029-58945048 | None:intergenic | 40.0% | |
| AGATAGACAAAACTCTGCTG+AGG | + | chr1_4:58945165-58945184 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr1_4:58945321-58945340 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr1_4:58945353-58945372 | Msa0173620:intron | 40.0% |
| AGTCTACCTTGCACAAACTA+GGG | + | chr1_4:58945384-58945403 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAAACT+AGG | + | chr1_4:58945385-58945404 | None:intergenic | 40.0% | |
| ! | AACACCATAGTTTAAGGTCC+AGG | - | chr1_4:58943184-58943203 | Msa0173620:three_prime_UTR | 40.0% |
| GACCTTAATGAAAGGTGGAA+TGG | + | chr1_4:58943240-58943259 | None:intergenic | 40.0% | |
| ATGGATACTCAAAGGATTGC+TGG | - | chr1_4:58943671-58943690 | Msa0173620:intron | 40.0% | |
| AACAACTATGGCAGGAATGA+AGG | - | chr1_4:58944102-58944121 | Msa0173620:CDS | 40.0% | |
| ! | GGAATGAAGGTATGCAGATT+TGG | - | chr1_4:58944115-58944134 | Msa0173620:CDS | 40.0% |
| CATTGTCAAATTCGTAGCCA+AGG | + | chr1_4:58944247-58944266 | None:intergenic | 40.0% | |
| GAGTTTCATGCTTATGTGCA+TGG | - | chr1_4:58944269-58944288 | Msa0173620:CDS | 40.0% | |
| ! | TCTGGCTTCAGTTTCTCATA+TGG | + | chr1_4:58944302-58944321 | None:intergenic | 40.0% |
| TGAAGCCAGATTTCGTGTTA+AGG | - | chr1_4:58944312-58944331 | Msa0173620:CDS | 40.0% | |
| AGGTTCCTTAACACGAAATC+TGG | + | chr1_4:58944320-58944339 | None:intergenic | 40.0% | |
| !! | TTCGTTGGTAGGAGTTGATA+GGG | + | chr1_4:58944548-58944567 | None:intergenic | 40.0% |
| ! | ATTCGTTGGTAGGAGTTGAT+AGG | + | chr1_4:58944549-58944568 | None:intergenic | 40.0% |
| TCCAAGAGTTTCAAACCTAG+GGG | + | chr1_4:58944719-58944738 | None:intergenic | 40.0% | |
| TATGAATGCTGTTCAGAGCA+TGG | + | chr1_4:58944989-58945008 | None:intergenic | 40.0% | |
| AGCATTACCTGAAATATGGG+AGG | - | chr1_4:58945019-58945038 | Msa0173620:intron | 40.0% | |
| TCTTCAACCTCCCATATTTC+AGG | + | chr1_4:58945029-58945048 | None:intergenic | 40.0% | |
| AGATAGACAAAACTCTGCTG+AGG | + | chr1_4:58945165-58945184 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr1_4:58945321-58945340 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr1_4:58945353-58945372 | Msa0173620:intron | 40.0% |
| AGTCTACCTTGCACAAACTA+GGG | + | chr1_4:58945384-58945403 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAAACT+AGG | + | chr1_4:58945385-58945404 | None:intergenic | 40.0% | |
| ACTCTCTACCCATTGAGCTT+AGG | - | chr1_4:58943855-58943874 | Msa0173620:intron | 45.0% | |
| CTCTCTACCCATTGAGCTTA+GGG | - | chr1_4:58943856-58943875 | Msa0173620:intron | 45.0% | |
| GCATGTCGCAAGAACATACA+AGG | - | chr1_4:58943888-58943907 | Msa0173620:intron | 45.0% | |
| GAACATGGAACAACTATGGC+AGG | - | chr1_4:58944094-58944113 | Msa0173620:CDS | 45.0% | |
| TTAATTTCCTGTCAGGCCCT+TGG | - | chr1_4:58944227-58944246 | Msa0173620:intron | 45.0% | |
| ! | TACGATTTTACGCTGAGGCA+TGG | + | chr1_4:58944351-58944370 | None:intergenic | 45.0% |
| ! | TGGCTTGGAAGATTGCTTTG+AGG | - | chr1_4:58944497-58944516 | Msa0173620:CDS | 45.0% |
| GGCTTGGAAGATTGCTTTGA+GGG | - | chr1_4:58944498-58944517 | Msa0173620:CDS | 45.0% | |
| TTTGCAGAGGATTCGTTGGT+AGG | + | chr1_4:58944559-58944578 | None:intergenic | 45.0% | |
| ! | ATGGTTTGCAGAGGATTCGT+TGG | + | chr1_4:58944563-58944582 | None:intergenic | 45.0% |
| AATCCTCTGCAAACCATCTG+TGG | - | chr1_4:58944566-58944585 | Msa0173620:CDS | 45.0% | |
| ! | ACCCCTAGGTTTGAAACTCT+TGG | - | chr1_4:58944715-58944734 | Msa0173620:CDS | 45.0% |
| CAAAACTTATGCATGGACCG+TGG | + | chr1_4:58945093-58945112 | None:intergenic | 45.0% | |
| ATTTAAGCACCACCATGCCA+TGG | + | chr1_4:58945215-58945234 | None:intergenic | 45.0% | |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr1_4:58945349-58945368 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr1_4:58945423-58945442 | None:intergenic | 45.0% |
| ACTCTCTACCCATTGAGCTT+AGG | - | chr1_4:58943855-58943874 | Msa0173620:intron | 45.0% | |
| CTCTCTACCCATTGAGCTTA+GGG | - | chr1_4:58943856-58943875 | Msa0173620:intron | 45.0% | |
| GCATGTCGCAAGAACATACA+AGG | - | chr1_4:58943888-58943907 | Msa0173620:intron | 45.0% | |
| GAACATGGAACAACTATGGC+AGG | - | chr1_4:58944094-58944113 | Msa0173620:CDS | 45.0% | |
| TTAATTTCCTGTCAGGCCCT+TGG | - | chr1_4:58944227-58944246 | Msa0173620:intron | 45.0% | |
| ! | TACGATTTTACGCTGAGGCA+TGG | + | chr1_4:58944351-58944370 | None:intergenic | 45.0% |
| ! | TGGCTTGGAAGATTGCTTTG+AGG | - | chr1_4:58944497-58944516 | Msa0173620:CDS | 45.0% |
| GGCTTGGAAGATTGCTTTGA+GGG | - | chr1_4:58944498-58944517 | Msa0173620:CDS | 45.0% | |
| TTTGCAGAGGATTCGTTGGT+AGG | + | chr1_4:58944559-58944578 | None:intergenic | 45.0% | |
| ! | ATGGTTTGCAGAGGATTCGT+TGG | + | chr1_4:58944563-58944582 | None:intergenic | 45.0% |
| AATCCTCTGCAAACCATCTG+TGG | - | chr1_4:58944566-58944585 | Msa0173620:CDS | 45.0% | |
| ! | ACCCCTAGGTTTGAAACTCT+TGG | - | chr1_4:58944715-58944734 | Msa0173620:CDS | 45.0% |
| CAAAACTTATGCATGGACCG+TGG | + | chr1_4:58945093-58945112 | None:intergenic | 45.0% | |
| ATTTAAGCACCACCATGCCA+TGG | + | chr1_4:58945215-58945234 | None:intergenic | 45.0% | |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr1_4:58945349-58945368 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr1_4:58945423-58945442 | None:intergenic | 45.0% |
| ! | CCACGTACGATTTTACGCTG+AGG | + | chr1_4:58944356-58944375 | None:intergenic | 50.0% |
| CCTCAGCGTAAAATCGTACG+TGG | - | chr1_4:58944353-58944372 | Msa0173620:CDS | 50.0% | |
| ATGCGGTTGAAGTTCTCAGC+AGG | - | chr1_4:58944472-58944491 | Msa0173620:intron | 50.0% | |
| GTTGAAGTTCTCAGCAGGCT+TGG | - | chr1_4:58944477-58944496 | Msa0173620:intron | 50.0% | |
| ! | CTTCCACAGATGGTTTGCAG+AGG | + | chr1_4:58944572-58944591 | None:intergenic | 50.0% |
| ACCATCTGTGGAAGCCTTTG+AGG | - | chr1_4:58944578-58944597 | Msa0173620:intron | 50.0% | |
| GTTGCAAGCGGAAAAGTAGC+TGG | - | chr1_4:58944801-58944820 | Msa0173620:intron | 50.0% | |
| ! | TTGATGACAGGTGGGTCGAT+CGG | - | chr1_4:58944944-58944963 | Msa0173620:exon | 50.0% |
| TGGCTTCGACTGCAAGAGAT+TGG | + | chr1_4:58945073-58945092 | None:intergenic | 50.0% | |
| ATCTCTTGCAGTCGAAGCCA+CGG | - | chr1_4:58945073-58945092 | Msa0173620:intron | 50.0% | |
| TTGTAATGGCCTCCATGGCA+TGG | - | chr1_4:58945200-58945219 | Msa0173620:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr1_4:58945375-58945394 | Msa0173620:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr1_4:58945417-58945436 | None:intergenic | 50.0% |
| ! | CCACGTACGATTTTACGCTG+AGG | + | chr1_4:58944356-58944375 | None:intergenic | 50.0% |
| CCTCAGCGTAAAATCGTACG+TGG | - | chr1_4:58944353-58944372 | Msa0173620:CDS | 50.0% | |
| ATGCGGTTGAAGTTCTCAGC+AGG | - | chr1_4:58944472-58944491 | Msa0173620:intron | 50.0% | |
| GTTGAAGTTCTCAGCAGGCT+TGG | - | chr1_4:58944477-58944496 | Msa0173620:intron | 50.0% | |
| ! | CTTCCACAGATGGTTTGCAG+AGG | + | chr1_4:58944572-58944591 | None:intergenic | 50.0% |
| ACCATCTGTGGAAGCCTTTG+AGG | - | chr1_4:58944578-58944597 | Msa0173620:intron | 50.0% | |
| GTTGCAAGCGGAAAAGTAGC+TGG | - | chr1_4:58944801-58944820 | Msa0173620:intron | 50.0% | |
| ! | TTGATGACAGGTGGGTCGAT+CGG | - | chr1_4:58944944-58944963 | Msa0173620:exon | 50.0% |
| TGGCTTCGACTGCAAGAGAT+TGG | + | chr1_4:58945073-58945092 | None:intergenic | 50.0% | |
| ATCTCTTGCAGTCGAAGCCA+CGG | - | chr1_4:58945073-58945092 | Msa0173620:intron | 50.0% | |
| TTGTAATGGCCTCCATGGCA+TGG | - | chr1_4:58945200-58945219 | Msa0173620:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr1_4:58945375-58945394 | Msa0173620:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr1_4:58945417-58945436 | None:intergenic | 50.0% |
| GCTGAGGCATGGAAAGCAGA+AGG | + | chr1_4:58944340-58944359 | None:intergenic | 55.0% | |
| CAACGCAGATCACGCACATG+CGG | - | chr1_4:58944455-58944474 | Msa0173620:intron | 55.0% | |
| AGTTCTCAGCAGGCTTGGCT+TGG | - | chr1_4:58944482-58944501 | Msa0173620:intron | 55.0% | |
| GCCTCAAAGGCTTCCACAGA+TGG | + | chr1_4:58944582-58944601 | None:intergenic | 55.0% | |
| GGTCGATCGGATTTAGTGCC+TGG | - | chr1_4:58944957-58944976 | Msa0173620:intron | 55.0% | |
| TTCAGAGCATGGTCAGCACC+AGG | + | chr1_4:58944978-58944997 | None:intergenic | 55.0% | |
| TAATGGCCTCCATGGCATGG+TGG | - | chr1_4:58945203-58945222 | Msa0173620:intron | 55.0% | |
| TAAGCACCACCATGCCATGG+AGG | + | chr1_4:58945212-58945231 | None:intergenic | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr1_4:58945328-58945347 | Msa0173620:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr1_4:58945412-58945431 | None:intergenic | 55.0% |
| GCTGAGGCATGGAAAGCAGA+AGG | + | chr1_4:58944340-58944359 | None:intergenic | 55.0% | |
| CAACGCAGATCACGCACATG+CGG | - | chr1_4:58944455-58944474 | Msa0173620:intron | 55.0% | |
| AGTTCTCAGCAGGCTTGGCT+TGG | - | chr1_4:58944482-58944501 | Msa0173620:intron | 55.0% | |
| GCCTCAAAGGCTTCCACAGA+TGG | + | chr1_4:58944582-58944601 | None:intergenic | 55.0% | |
| GGTCGATCGGATTTAGTGCC+TGG | - | chr1_4:58944957-58944976 | Msa0173620:intron | 55.0% | |
| TTCAGAGCATGGTCAGCACC+AGG | + | chr1_4:58944978-58944997 | None:intergenic | 55.0% | |
| TAATGGCCTCCATGGCATGG+TGG | - | chr1_4:58945203-58945222 | Msa0173620:intron | 55.0% | |
| TAAGCACCACCATGCCATGG+AGG | + | chr1_4:58945212-58945231 | None:intergenic | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr1_4:58945328-58945347 | Msa0173620:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr1_4:58945412-58945431 | None:intergenic | 55.0% |
| TTCGTAGCCAAGGGCCTGAC+AGG | + | chr1_4:58944237-58944256 | None:intergenic | 60.0% | |
| CGCATGTGCGTGATCTGCGT+TGG | + | chr1_4:58944457-58944476 | None:intergenic | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr1_4:58945402-58945421 | Msa0173620:intron | 60.0% | |
| TTCGTAGCCAAGGGCCTGAC+AGG | + | chr1_4:58944237-58944256 | None:intergenic | 60.0% | |
| CGCATGTGCGTGATCTGCGT+TGG | + | chr1_4:58944457-58944476 | None:intergenic | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr1_4:58945402-58945421 | Msa0173620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58943167 | 58945451 | 58943167 | ID=Msa0173620;Name=Msa0173620 |
| chr1_4 | mRNA | 58943167 | 58945451 | 58943167 | ID=Msa0173620-mRNA-1;Parent=Msa0173620;Name=Msa0173620-mRNA-1;_AED=0.14;_eAED=0.14;_QI=57|1|1|1|0.85|0.75|8|345|249 |
| chr1_4 | exon | 58943167 | 58943664 | 58943167 | ID=Msa0173620-mRNA-1:exon:18435;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58943779 | 58943844 | 58943779 | ID=Msa0173620-mRNA-1:exon:18434;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58943980 | 58944171 | 58943980 | ID=Msa0173620-mRNA-1:exon:18433;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58944251 | 58944376 | 58944251 | ID=Msa0173620-mRNA-1:exon:18432;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58944495 | 58944592 | 58944495 | ID=Msa0173620-mRNA-1:exon:18431;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58944709 | 58944774 | 58944709 | ID=Msa0173620-mRNA-1:exon:18430;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58944899 | 58944965 | 58944899 | ID=Msa0173620-mRNA-1:exon:18429;Parent=Msa0173620-mRNA-1 |
| chr1_4 | exon | 58945413 | 58945451 | 58945413 | ID=Msa0173620-mRNA-1:exon:18428;Parent=Msa0173620-mRNA-1 |
| chr1_4 | five_prime_UTR | 58945413 | 58945451 | 58945413 | ID=Msa0173620-mRNA-1:five_prime_utr;Parent=Msa0173620-mRNA-1 |
| chr1_4 | five_prime_UTR | 58944948 | 58944965 | 58944948 | ID=Msa0173620-mRNA-1:five_prime_utr;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58944899 | 58944947 | 58944899 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58944709 | 58944774 | 58944709 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58944495 | 58944592 | 58944495 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58944251 | 58944376 | 58944251 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58943980 | 58944171 | 58943980 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58943779 | 58943844 | 58943779 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | CDS | 58943512 | 58943664 | 58943512 | ID=Msa0173620-mRNA-1:cds;Parent=Msa0173620-mRNA-1 |
| chr1_4 | three_prime_UTR | 58943167 | 58943511 | 58943167 | ID=Msa0173620-mRNA-1:three_prime_utr;Parent=Msa0173620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
