Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002990 | XP_013469126.1 | 97.189 | 249 | 7 | 0 | 1 | 249 | 9 | 257 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002990 | sp|Q09893|YAI5_SCHPO | 33.480 | 227 | 136 | 9 | 9 | 226 | 3 | 223 | 9.26e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002990 | I3SRG9 | 97.189 | 249 | 7 | 0 | 1 | 249 | 9 | 257 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024890 | Msa1002990 | 0.823571 | 1.289018e-53 | -8.615850e-47 |
| Msa0034310 | Msa1002990 | 0.992786 | 1.978604e-195 | -8.615850e-47 |
| Msa0081310 | Msa1002990 | 0.998117 | 1.455115e-256 | -8.615850e-47 |
| Msa0722930 | Msa1002990 | -0.818262 | 2.148983e-52 | -8.615850e-47 |
| Msa0723140 | Msa1002990 | -0.812377 | 4.370645e-51 | -8.615850e-47 |
| Msa0745460 | Msa1002990 | 0.812167 | 4.857973e-51 | -8.615850e-47 |
| Msa0796430 | Msa1002990 | 0.818350 | 2.052263e-52 | -8.615850e-47 |
| Msa0811000 | Msa1002990 | -0.803467 | 3.437922e-49 | -8.615850e-47 |
| Msa0834270 | Msa1002990 | 0.839138 | 1.895870e-57 | -8.615850e-47 |
| Msa0139720 | Msa1002990 | 0.811906 | 5.538693e-51 | -8.615850e-47 |
| Msa0173620 | Msa1002990 | 0.999047 | 1.417250e-287 | -8.615850e-47 |
| Msa0465970 | Msa1002990 | -0.814529 | 1.471168e-51 | -8.615850e-47 |
| Msa1002990 | Msa1080790 | -0.822041 | 2.928092e-53 | -8.615850e-47 |
| Msa1002990 | Msa1118930 | -0.816205 | 6.235313e-52 | -8.615850e-47 |
| Msa1002990 | Msa1132560 | 0.815518 | 8.872170e-52 | -8.615850e-47 |
| Msa1002990 | Msa1194940 | -0.801453 | 8.940606e-49 | -8.615850e-47 |
| Msa1002990 | Msa1287160 | -0.818356 | 2.045377e-52 | -8.615850e-47 |
| Msa1002990 | Msa1370630 | -0.801916 | 7.182709e-49 | -8.615850e-47 |
| Msa1002990 | Msa1412760 | 0.980045 | 2.540534e-149 | -8.615850e-47 |
| Msa1002990 | Msa1416470 | 0.999331 | 9.720170e-304 | -8.615850e-47 |
| Msa1002990 | Msa1449670 | 0.991059 | 1.103991e-185 | -8.615850e-47 |
| Msa1002990 | Msa1457070 | -0.824497 | 7.816174e-54 | -8.615850e-47 |
| Msa0242700 | Msa1002990 | 0.862887 | 3.685275e-64 | -8.615850e-47 |
| Msa0280950 | Msa1002990 | 0.808793 | 2.601311e-50 | -8.615850e-47 |
| Msa0304990 | Msa1002990 | -0.807745 | 4.349874e-50 | -8.615850e-47 |
| Msa0496460 | Msa1002990 | -0.800646 | 1.307408e-48 | -8.615850e-47 |
| Msa0921080 | Msa1002990 | -0.816291 | 5.966355e-52 | -8.615850e-47 |
| Msa0951720 | Msa1002990 | -0.817115 | 3.898313e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002990 | MtrunA17_Chr1g0193721 | 97.189 | 249 | 7 | 0 | 1 | 249 | 1 | 249 | 0.0 | 506 |
| Msa1002990 | MtrunA17_Chr7g0238911 | 51.042 | 288 | 93 | 2 | 10 | 249 | 14 | 301 | 2.71e-101 | 296 |
| Msa1002990 | MtrunA17_Chr2g0328451 | 49.129 | 287 | 107 | 3 | 2 | 249 | 5 | 291 | 2.26e-96 | 284 |
| Msa1002990 | MtrunA17_Chr4g0031841 | 50.545 | 275 | 106 | 3 | 4 | 249 | 8 | 281 | 5.05e-96 | 282 |
| Msa1002990 | MtrunA17_Chr4g0009921 | 51.111 | 270 | 87 | 2 | 4 | 228 | 9 | 278 | 1.81e-94 | 279 |
| Msa1002990 | MtrunA17_Chr4g0009961 | 47.751 | 289 | 102 | 1 | 10 | 249 | 12 | 300 | 1.16e-91 | 272 |
| Msa1002990 | MtrunA17_Chr1g0205581 | 48.511 | 235 | 111 | 4 | 11 | 235 | 10 | 244 | 2.17e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002990 | AT3G62040.1 | 71.698 | 212 | 57 | 3 | 41 | 249 | 1 | 212 | 1.64e-107 | 309 |
| Msa1002990 | AT5G59480.4 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa1002990 | AT5G59480.5 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa1002990 | AT5G59480.3 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa1002990 | AT5G59480.1 | 50.549 | 273 | 104 | 2 | 4 | 245 | 8 | 280 | 2.07e-98 | 289 |
| Msa1002990 | AT5G59480.2 | 50.549 | 273 | 103 | 3 | 4 | 245 | 8 | 279 | 4.86e-96 | 283 |
| Msa1002990 | AT5G02230.2 | 52.060 | 267 | 101 | 3 | 10 | 249 | 14 | 280 | 1.64e-88 | 264 |
| Msa1002990 | AT5G02230.1 | 52.060 | 267 | 101 | 3 | 10 | 249 | 14 | 280 | 1.64e-88 | 264 |
| Msa1002990 | AT5G59490.1 | 52.918 | 257 | 104 | 3 | 10 | 249 | 10 | 266 | 7.43e-88 | 261 |
| Msa1002990 | AT5G02230.3 | 52.060 | 267 | 101 | 3 | 10 | 249 | 51 | 317 | 8.78e-88 | 263 |
| Msa1002990 | AT2G32150.1 | 48.649 | 222 | 107 | 2 | 13 | 227 | 8 | 229 | 4.30e-78 | 236 |
| Msa1002990 | AT5G59490.2 | 57.635 | 203 | 74 | 2 | 10 | 200 | 10 | 212 | 4.04e-72 | 219 |
| Msa1002990 | AT2G32150.2 | 49.490 | 196 | 92 | 2 | 12 | 200 | 7 | 202 | 4.01e-67 | 207 |
| Msa1002990 | AT2G32150.3 | 50.286 | 175 | 80 | 2 | 13 | 180 | 8 | 182 | 3.81e-59 | 186 |
Find 79 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACCTCCCATATTTC+AGG | 0.199588 | 6_4:+89798010 | None:intergenic |
| CAATTAAACACCATAGTTTA+AGG | 0.205482 | 6_4:-89799858 | Msa1002990:five_prime_UTR |
| GAGAAGCATTACCTGAAATA+TGG | 0.252058 | 6_4:-89798021 | Msa1002990:CDS |
| ATTGAGCTTAGGGATCAATT+TGG | 0.335151 | 6_4:-89799170 | Msa1002990:CDS |
| AATACCTGGACCTTAAACTA+TGG | 0.336568 | 6_4:+89799848 | None:intergenic |
| ATTCGTTGGTAGGAGTTGAT+AGG | 0.339282 | 6_4:+89798490 | None:intergenic |
| TTGCAATTGGCATCACAAAA+TGG | 0.340643 | 6_4:-89797792 | Msa1002990:three_prime_UTR |
| AGGTTCCTTAACACGAAATC+TGG | 0.347342 | 6_4:+89798719 | None:intergenic |
| AATATACCGAACGAAATTAC+TGG | 0.354237 | 6_4:-89797724 | Msa1002990:three_prime_UTR |
| GGCTTGGAAGATTGCTTTGA+GGG | 0.359868 | 6_4:-89798538 | Msa1002990:CDS |
| ATGGATACTCAAAGGATTGC+TGG | 0.374412 | 6_4:-89799365 | Msa1002990:CDS |
| TGAACTTTGCATTTAATAGT+TGG | 0.387686 | 6_4:+89797766 | None:intergenic |
| ACCATCTGTGGAAGCCTTTG+AGG | 0.394435 | 6_4:-89798458 | Msa1002990:CDS |
| CTCTCTACCCATTGAGCTTA+GGG | 0.404141 | 6_4:-89799180 | Msa1002990:CDS |
| TCTGGCTTCAGTTTCTCATA+TGG | 0.405723 | 6_4:+89798737 | None:intergenic |
| ATATACTCGTAACAGTGATC+TGG | 0.410966 | 6_4:+89797601 | None:intergenic |
| TACAAATCCAGACACATCTT+TGG | 0.424509 | 6_4:+89798969 | None:intergenic |
| AAATGTATGAATCTTGCAAT+TGG | 0.426552 | 6_4:-89797805 | Msa1002990:three_prime_UTR |
| ACTCTCTACCCATTGAGCTT+AGG | 0.439304 | 6_4:-89799181 | Msa1002990:CDS |
| TGAAGCCAGATTTCGTGTTA+AGG | 0.440016 | 6_4:-89798724 | Msa1002990:CDS |
| TTAATTTCCTGTCAGGCCCT+TGG | 0.440659 | 6_4:-89798809 | Msa1002990:intron |
| TGGCTTCGACTGCAAGAGAT+TGG | 0.449210 | 6_4:+89797966 | None:intergenic |
| TGGCTTGGAAGATTGCTTTG+AGG | 0.450052 | 6_4:-89798539 | Msa1002990:CDS |
| TCTAGAACATGGAACAACTA+TGG | 0.451217 | 6_4:-89798946 | Msa1002990:CDS |
| TTCGTTGGTAGGAGTTGATA+GGG | 0.461128 | 6_4:+89798491 | None:intergenic |
| TATAGTACCAAAGATGTGTC+TGG | 0.470960 | 6_4:-89798976 | Msa1002990:CDS |
| AAATTGATCCCTAAGCTCAA+TGG | 0.472577 | 6_4:+89799172 | None:intergenic |
| AGTTCTCAGCAGGCTTGGCT+TGG | 0.483634 | 6_4:-89798554 | Msa1002990:CDS |
| GGTCGATCGGATTTAGTGCC+TGG | 0.483986 | 6_4:-89798079 | Msa1002990:CDS |
| GCCTCAAAGGCTTCCACAGA+TGG | 0.484285 | 6_4:+89798457 | None:intergenic |
| GTTGAAGTTCTCAGCAGGCT+TGG | 0.485005 | 6_4:-89798559 | Msa1002990:CDS |
| AATTGATCCCTAAGCTCAAT+GGG | 0.491033 | 6_4:+89799173 | None:intergenic |
| AACACCATAGTTTAAGGTCC+AGG | 0.491638 | 6_4:-89799852 | Msa1002990:intron |
| GTTGCAAGCGGAAAAGTAGC+TGG | 0.495148 | 6_4:-89798235 | Msa1002990:CDS |
| TAGTCTACCTTGCACAAACT+AGG | 0.497605 | 6_4:+89797654 | None:intergenic |
| AGAAGCATTACCTGAAATAT+GGG | 0.503577 | 6_4:-89798020 | Msa1002990:CDS |
| CTATCAACCACGCCGTCTCC+AGG | 0.503877 | 6_4:-89797634 | Msa1002990:three_prime_UTR |
| GAGATTGGATCATTTGTTGT+TGG | 0.507343 | 6_4:+89797981 | None:intergenic |
| GATTCAAAGCTCTTTCAAGA+TGG | 0.508100 | 6_4:-89799384 | Msa1002990:exon |
| GCTTTCTTTAAGACGTTTCG+CGG | 0.509643 | 6_4:-89797683 | Msa1002990:three_prime_UTR |
| CTTGTTTACAGAGCATATGT+TGG | 0.516527 | 6_4:-89799021 | Msa1002990:intron |
| AACAACTATGGCAGGAATGA+AGG | 0.518265 | 6_4:-89798934 | Msa1002990:intron |
| ATGCGGTTGAAGTTCTCAGC+AGG | 0.526884 | 6_4:-89798564 | Msa1002990:CDS |
| TTTGCAGAGGATTCGTTGGT+AGG | 0.536737 | 6_4:+89798480 | None:intergenic |
| GAACATGGAACAACTATGGC+AGG | 0.541348 | 6_4:-89798942 | Msa1002990:CDS |
| ACTCACCCAGTAATTTCGTT+CGG | 0.548375 | 6_4:+89797718 | None:intergenic |
| AATCCTCTGCAAACCATCTG+TGG | 0.549541 | 6_4:-89798470 | Msa1002990:CDS |
| CATTGTCAAATTCGTAGCCA+AGG | 0.549744 | 6_4:+89798792 | None:intergenic |
| TTCAGAGCATGGTCAGCACC+AGG | 0.555322 | 6_4:+89798061 | None:intergenic |
| ATCGAAGCAAAACTTATGCA+TGG | 0.557183 | 6_4:+89797939 | None:intergenic |
| ATCTCTTGCAGTCGAAGCCA+CGG | 0.558687 | 6_4:-89797963 | Msa1002990:CDS |
| ATGGTTTGCAGAGGATTCGT+TGG | 0.560194 | 6_4:+89798476 | None:intergenic |
| TATACTCGTAACAGTGATCT+GGG | 0.563092 | 6_4:+89797602 | None:intergenic |
| GAGTTTCATGCTTATGTGCA+TGG | 0.564136 | 6_4:-89798767 | Msa1002990:CDS |
| TTACTGGGTGAGTCACGACC+AGG | 0.566531 | 6_4:-89797708 | Msa1002990:three_prime_UTR |
| CTGGATTTGTATCTAGAACA+TGG | 0.570926 | 6_4:-89798957 | Msa1002990:CDS |
| TTGATGACAGGTGGGTCGAT+CGG | 0.573116 | 6_4:-89798092 | Msa1002990:intron |
| AGTCTACCTTGCACAAACTA+GGG | 0.574113 | 6_4:+89797655 | None:intergenic |
| TATGAATGCTGTTCAGAGCA+TGG | 0.576032 | 6_4:+89798050 | None:intergenic |
| CTTTCAAGATGGATACTCAA+AGG | 0.580368 | 6_4:-89799373 | Msa1002990:exon |
| CGCATGTGCGTGATCTGCGT+TGG | 0.594208 | 6_4:+89798582 | None:intergenic |
| CTTCCACAGATGGTTTGCAG+AGG | 0.599046 | 6_4:+89798467 | None:intergenic |
| AATTCTAATAGCAGCCTCAA+AGG | 0.600461 | 6_4:+89798444 | None:intergenic |
| ATATACCGAACGAAATTACT+GGG | 0.604916 | 6_4:-89797723 | Msa1002990:three_prime_UTR |
| ATTTAAGCACCACCATGCCA+TGG | 0.607196 | 6_4:+89797824 | None:intergenic |
| TTGTAATGGCCTCCATGGCA+TGG | 0.611695 | 6_4:-89797836 | Msa1002990:three_prime_UTR |
| GCATGTCGCAAGAACATACA+AGG | 0.614967 | 6_4:-89799148 | Msa1002990:intron |
| ATTGTCAAATTCGTAGCCAA+GGG | 0.618916 | 6_4:+89798793 | None:intergenic |
| AGTGTTAGAAATGTTGCAAG+CGG | 0.624326 | 6_4:-89798247 | Msa1002990:CDS |
| GCTGAGGCATGGAAAGCAGA+AGG | 0.639829 | 6_4:+89798699 | None:intergenic |
| AGATAGACAAAACTCTGCTG+AGG | 0.650985 | 6_4:+89797874 | None:intergenic |
| CAACGCAGATCACGCACATG+CGG | 0.653925 | 6_4:-89798581 | Msa1002990:CDS |
| GCACTACCCTAGTTTGTGCA+AGG | 0.661073 | 6_4:-89797661 | Msa1002990:three_prime_UTR |
| ACGTCTTAAAGAAAGCGACC+TGG | 0.675817 | 6_4:+89797690 | None:intergenic |
| AGCATTACCTGAAATATGGG+AGG | 0.676770 | 6_4:-89798017 | Msa1002990:CDS |
| TAATGGCCTCCATGGCATGG+TGG | 0.680313 | 6_4:-89797833 | Msa1002990:three_prime_UTR |
| TAAGCACCACCATGCCATGG+AGG | 0.695428 | 6_4:+89797827 | None:intergenic |
| CAAAACTTATGCATGGACCG+TGG | 0.699924 | 6_4:+89797946 | None:intergenic |
| TATATCTTACAATAACAGTG+TGG | 0.713748 | 6_4:+89798209 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATGTATTATTTTATTATA+TGG | - | chr6_4:89797723-89797742 | Msa1002990:three_prime_UTR | 10.0% |
| !!! | TTAAAAGTAAATATTGATTA+TGG | - | chr6_4:89798239-89798258 | Msa1002990:CDS | 10.0% |
| !!! | TGATGTATTATTTTATTATA+TGG | - | chr6_4:89797723-89797742 | Msa1002990:three_prime_UTR | 10.0% |
| !!! | TTAAAAGTAAATATTGATTA+TGG | - | chr6_4:89798239-89798258 | Msa1002990:CDS | 10.0% |
| !!! | GAAAAGTATATAAAAACTAA+AGG | + | chr6_4:89797658-89797677 | None:intergenic | 15.0% |
| !!! | AAAGAATATTTTGAGTATTA+CGG | + | chr6_4:89798863-89798882 | None:intergenic | 15.0% |
| !!! | AATCTACAATAATTTTGTAA+TGG | - | chr6_4:89799626-89799645 | Msa1002990:intron | 15.0% |
| !!! | GAAAAGTATATAAAAACTAA+AGG | + | chr6_4:89797658-89797677 | None:intergenic | 15.0% |
| !!! | AAAGAATATTTTGAGTATTA+CGG | + | chr6_4:89798863-89798882 | None:intergenic | 15.0% |
| !!! | AATCTACAATAATTTTGTAA+TGG | - | chr6_4:89799626-89799645 | Msa1002990:intron | 15.0% |
| !! | TAATAATCTTGCATGAATAT+TGG | - | chr6_4:89798171-89798190 | Msa1002990:intron | 20.0% |
| !! | TTCTATATGAAAATTTGAAG+AGG | + | chr6_4:89798214-89798233 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTTCATATAGA+AGG | - | chr6_4:89798213-89798232 | Msa1002990:intron | 20.0% |
| !! | TAATAATCTTGCATGAATAT+TGG | - | chr6_4:89798171-89798190 | Msa1002990:intron | 20.0% |
| !! | TTCTATATGAAAATTTGAAG+AGG | + | chr6_4:89798214-89798233 | None:intergenic | 20.0% |
| !!! | TCTTCAAATTTTCATATAGA+AGG | - | chr6_4:89798213-89798232 | Msa1002990:intron | 20.0% |
| ! | CAATTAAACACCATAGTTTA+AGG | - | chr6_4:89797618-89797637 | Msa1002990:three_prime_UTR | 25.0% |
| ! | AATATCAAGACCTTAATGAA+AGG | + | chr6_4:89797688-89797707 | None:intergenic | 25.0% |
| ! | TATTATATGGTCCATAATGA+TGG | - | chr6_4:89797736-89797755 | Msa1002990:three_prime_UTR | 25.0% |
| ! | TTGATCATCAATCATTTCAT+GGG | + | chr6_4:89797797-89797816 | None:intergenic | 25.0% |
| ! | TTTGATCATCAATCATTTCA+TGG | + | chr6_4:89797798-89797817 | None:intergenic | 25.0% |
| !! | CTTTTCTATTTCAGACTTTT+CGG | - | chr6_4:89797948-89797967 | Msa1002990:exon | 25.0% |
| ! | ATATGAAATAATCTGAACAC+TGG | + | chr6_4:89798392-89798411 | None:intergenic | 25.0% |
| ! | AAACAAGATTGATCAACTAT+AGG | + | chr6_4:89798442-89798461 | None:intergenic | 25.0% |
| ! | AGTAAGTCAATAAAAAACTG+TGG | + | chr6_4:89798587-89798606 | None:intergenic | 25.0% |
| !! | ATCAATCTTACTGTTTTCTT+TGG | + | chr6_4:89799070-89799089 | None:intergenic | 25.0% |
| ! | TATATCTTACAATAACAGTG+TGG | + | chr6_4:89799270-89799289 | None:intergenic | 25.0% |
| ! | AAATGTATGAATCTTGCAAT+TGG | - | chr6_4:89799671-89799690 | Msa1002990:intron | 25.0% |
| ! | TGAACTTTGCATTTAATAGT+TGG | + | chr6_4:89799713-89799732 | None:intergenic | 25.0% |
| ! | CAATTAAACACCATAGTTTA+AGG | - | chr6_4:89797618-89797637 | Msa1002990:three_prime_UTR | 25.0% |
| ! | AATATCAAGACCTTAATGAA+AGG | + | chr6_4:89797688-89797707 | None:intergenic | 25.0% |
| ! | TATTATATGGTCCATAATGA+TGG | - | chr6_4:89797736-89797755 | Msa1002990:three_prime_UTR | 25.0% |
| ! | TTGATCATCAATCATTTCAT+GGG | + | chr6_4:89797797-89797816 | None:intergenic | 25.0% |
| ! | TTTGATCATCAATCATTTCA+TGG | + | chr6_4:89797798-89797817 | None:intergenic | 25.0% |
| !! | CTTTTCTATTTCAGACTTTT+CGG | - | chr6_4:89797948-89797967 | Msa1002990:exon | 25.0% |
| ! | ATATGAAATAATCTGAACAC+TGG | + | chr6_4:89798392-89798411 | None:intergenic | 25.0% |
| ! | AAACAAGATTGATCAACTAT+AGG | + | chr6_4:89798442-89798461 | None:intergenic | 25.0% |
| ! | AGTAAGTCAATAAAAAACTG+TGG | + | chr6_4:89798587-89798606 | None:intergenic | 25.0% |
| !! | ATCAATCTTACTGTTTTCTT+TGG | + | chr6_4:89799070-89799089 | None:intergenic | 25.0% |
| ! | TATATCTTACAATAACAGTG+TGG | + | chr6_4:89799270-89799289 | None:intergenic | 25.0% |
| ! | AAATGTATGAATCTTGCAAT+TGG | - | chr6_4:89799671-89799690 | Msa1002990:intron | 25.0% |
| ! | TGAACTTTGCATTTAATAGT+TGG | + | chr6_4:89799713-89799732 | None:intergenic | 25.0% |
| AAACTAAAGGAAACAATACC+TGG | + | chr6_4:89797645-89797664 | None:intergenic | 30.0% | |
| TGATCACAGAATTAAATGCT+AGG | + | chr6_4:89797824-89797843 | None:intergenic | 30.0% | |
| CAACAAGTATGTCTTTCTTA+TGG | - | chr6_4:89797842-89797861 | Msa1002990:three_prime_UTR | 30.0% | |
| GTCTTTCTTATGGTCAAATT+TGG | - | chr6_4:89797852-89797871 | Msa1002990:three_prime_UTR | 30.0% | |
| !! | TCTTTGAAACGTACTTTGTT+AGG | - | chr6_4:89797906-89797925 | Msa1002990:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGTTCTTTCTCCA+AGG | + | chr6_4:89798041-89798060 | None:intergenic | 30.0% |
| !!! | GCACTCATAGTTTATTTTAG+AGG | - | chr6_4:89798356-89798375 | Msa1002990:intron | 30.0% |
| TTAAGTCTTAATTTCCTGTC+AGG | - | chr6_4:89798660-89798679 | Msa1002990:intron | 30.0% | |
| ATGCTCTTTAATGAACAAAC+TGG | + | chr6_4:89798840-89798859 | None:intergenic | 30.0% | |
| TACTTACCTAAAAAGTGACA+TGG | - | chr6_4:89799090-89799109 | Msa1002990:intron | 30.0% | |
| ! | GAGAGATTACTTCTTTTATG+TGG | - | chr6_4:89799112-89799131 | Msa1002990:intron | 30.0% |
| !!! | CTATAGATTTTTTTACCCCT+AGG | - | chr6_4:89799141-89799160 | Msa1002990:intron | 30.0% |
| TTCTATCTATGCATCATATG+TGG | - | chr6_4:89799293-89799312 | Msa1002990:intron | 30.0% | |
| ! | AGTAACAACATATTGATGAC+AGG | - | chr6_4:89799372-89799391 | Msa1002990:exon | 30.0% |
| !! | AGAAGCATTACCTGAAATAT+GGG | - | chr6_4:89799456-89799475 | Msa1002990:intron | 30.0% |
| AATATACCGAACGAAATTAC+TGG | - | chr6_4:89799752-89799771 | Msa1002990:intron | 30.0% | |
| ATATACCGAACGAAATTACT+GGG | - | chr6_4:89799753-89799772 | Msa1002990:intron | 30.0% | |
| AAACTAAAGGAAACAATACC+TGG | + | chr6_4:89797645-89797664 | None:intergenic | 30.0% | |
| TGATCACAGAATTAAATGCT+AGG | + | chr6_4:89797824-89797843 | None:intergenic | 30.0% | |
| CAACAAGTATGTCTTTCTTA+TGG | - | chr6_4:89797842-89797861 | Msa1002990:three_prime_UTR | 30.0% | |
| GTCTTTCTTATGGTCAAATT+TGG | - | chr6_4:89797852-89797871 | Msa1002990:three_prime_UTR | 30.0% | |
| !! | TCTTTGAAACGTACTTTGTT+AGG | - | chr6_4:89797906-89797925 | Msa1002990:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGTTCTTTCTCCA+AGG | + | chr6_4:89798041-89798060 | None:intergenic | 30.0% |
| !!! | GCACTCATAGTTTATTTTAG+AGG | - | chr6_4:89798356-89798375 | Msa1002990:intron | 30.0% |
| TTAAGTCTTAATTTCCTGTC+AGG | - | chr6_4:89798660-89798679 | Msa1002990:intron | 30.0% | |
| ATGCTCTTTAATGAACAAAC+TGG | + | chr6_4:89798840-89798859 | None:intergenic | 30.0% | |
| TACTTACCTAAAAAGTGACA+TGG | - | chr6_4:89799090-89799109 | Msa1002990:intron | 30.0% | |
| ! | GAGAGATTACTTCTTTTATG+TGG | - | chr6_4:89799112-89799131 | Msa1002990:intron | 30.0% |
| !!! | CTATAGATTTTTTTACCCCT+AGG | - | chr6_4:89799141-89799160 | Msa1002990:intron | 30.0% |
| TTCTATCTATGCATCATATG+TGG | - | chr6_4:89799293-89799312 | Msa1002990:intron | 30.0% | |
| ! | AGTAACAACATATTGATGAC+AGG | - | chr6_4:89799372-89799391 | Msa1002990:exon | 30.0% |
| !! | AGAAGCATTACCTGAAATAT+GGG | - | chr6_4:89799456-89799475 | Msa1002990:intron | 30.0% |
| AATATACCGAACGAAATTAC+TGG | - | chr6_4:89799752-89799771 | Msa1002990:intron | 30.0% | |
| ATATACCGAACGAAATTACT+GGG | - | chr6_4:89799753-89799772 | Msa1002990:intron | 30.0% | |
| AATACCTGGACCTTAAACTA+TGG | + | chr6_4:89797631-89797650 | None:intergenic | 35.0% | |
| TTCCATTCCACCTTTCATTA+AGG | - | chr6_4:89797675-89797694 | Msa1002990:three_prime_UTR | 35.0% | |
| ATCAAGACCTTAATGAAAGG+TGG | + | chr6_4:89797685-89797704 | None:intergenic | 35.0% | |
| AGTAACGTTGTCCATCATTA+TGG | + | chr6_4:89797750-89797769 | None:intergenic | 35.0% | |
| !! | GTGTTGATCGCTTAGATTTT+TGG | - | chr6_4:89797876-89797895 | Msa1002990:three_prime_UTR | 35.0% |
| TAAGATCTCAAAACTTGCCT+TGG | - | chr6_4:89798021-89798040 | Msa1002990:CDS | 35.0% | |
| GATTCAAAGCTCTTTCAAGA+TGG | - | chr6_4:89798092-89798111 | Msa1002990:intron | 35.0% | |
| CTTTCAAGATGGATACTCAA+AGG | - | chr6_4:89798103-89798122 | Msa1002990:intron | 35.0% | |
| !! | AAATACGAGTGCTTGCTTTT+TGG | - | chr6_4:89798138-89798157 | Msa1002990:intron | 35.0% |
| !!! | TGCTTGCTTTTTGGTATGAA+TGG | - | chr6_4:89798147-89798166 | Msa1002990:intron | 35.0% |
| TTGATTATGGTTCCACATGT+TGG | - | chr6_4:89798252-89798271 | Msa1002990:CDS | 35.0% | |
| TATCTGTTGTTACCAACATG+TGG | + | chr6_4:89798267-89798286 | None:intergenic | 35.0% | |
| !! | CATGTTGGTAACAACAGATA+TGG | - | chr6_4:89798267-89798286 | Msa1002990:intron | 35.0% |
| AATTGATCCCTAAGCTCAAT+GGG | + | chr6_4:89798306-89798325 | None:intergenic | 35.0% | |
| AAATTGATCCCTAAGCTCAA+TGG | + | chr6_4:89798307-89798326 | None:intergenic | 35.0% | |
| ATTGAGCTTAGGGATCAATT+TGG | - | chr6_4:89798306-89798325 | Msa1002990:intron | 35.0% | |
| CTTGTTTACAGAGCATATGT+TGG | - | chr6_4:89798455-89798474 | Msa1002990:CDS | 35.0% | |
| TATAGTACCAAAGATGTGTC+TGG | - | chr6_4:89798500-89798519 | Msa1002990:CDS | 35.0% | |
| TACAAATCCAGACACATCTT+TGG | + | chr6_4:89798510-89798529 | None:intergenic | 35.0% | |
| ! | CTGGATTTGTATCTAGAACA+TGG | - | chr6_4:89798519-89798538 | Msa1002990:CDS | 35.0% |
| ! | TCTAGAACATGGAACAACTA+TGG | - | chr6_4:89798530-89798549 | Msa1002990:CDS | 35.0% |
| ATTGTCAAATTCGTAGCCAA+GGG | + | chr6_4:89798686-89798705 | None:intergenic | 35.0% | |
| GTAAAATCGTACGTGGAAAA+AGG | - | chr6_4:89798800-89798819 | Msa1002990:intron | 35.0% | |
| AATTCTAATAGCAGCCTCAA+AGG | + | chr6_4:89799035-89799054 | None:intergenic | 35.0% | |
| !!! | ATCTCTCCATGTCACTTTTT+AGG | + | chr6_4:89799099-89799118 | None:intergenic | 35.0% |
| TTCCAAGAGTTTCAAACCTA+GGG | + | chr6_4:89799160-89799179 | None:intergenic | 35.0% | |
| ATTCCAAGAGTTTCAAACCT+AGG | + | chr6_4:89799161-89799180 | None:intergenic | 35.0% | |
| AGTGTTAGAAATGTTGCAAG+CGG | - | chr6_4:89799229-89799248 | Msa1002990:intron | 35.0% | |
| ! | AACAACATATTGATGACAGG+TGG | - | chr6_4:89799375-89799394 | Msa1002990:exon | 35.0% |
| ! | ACAACATATTGATGACAGGT+GGG | - | chr6_4:89799376-89799395 | Msa1002990:exon | 35.0% |
| !! | GAGAAGCATTACCTGAAATA+TGG | - | chr6_4:89799455-89799474 | Msa1002990:intron | 35.0% |
| !! | GAGATTGGATCATTTGTTGT+TGG | + | chr6_4:89799498-89799517 | None:intergenic | 35.0% |
| ATCGAAGCAAAACTTATGCA+TGG | + | chr6_4:89799540-89799559 | None:intergenic | 35.0% | |
| ! | TAATTTTGTAATGGCCTCCA+TGG | - | chr6_4:89799635-89799654 | Msa1002990:intron | 35.0% |
| TTGCAATTGGCATCACAAAA+TGG | - | chr6_4:89799684-89799703 | Msa1002990:intron | 35.0% | |
| AATACCTGGACCTTAAACTA+TGG | + | chr6_4:89797631-89797650 | None:intergenic | 35.0% | |
| TTCCATTCCACCTTTCATTA+AGG | - | chr6_4:89797675-89797694 | Msa1002990:three_prime_UTR | 35.0% | |
| ATCAAGACCTTAATGAAAGG+TGG | + | chr6_4:89797685-89797704 | None:intergenic | 35.0% | |
| AGTAACGTTGTCCATCATTA+TGG | + | chr6_4:89797750-89797769 | None:intergenic | 35.0% | |
| !! | GTGTTGATCGCTTAGATTTT+TGG | - | chr6_4:89797876-89797895 | Msa1002990:three_prime_UTR | 35.0% |
| TAAGATCTCAAAACTTGCCT+TGG | - | chr6_4:89798021-89798040 | Msa1002990:CDS | 35.0% | |
| GATTCAAAGCTCTTTCAAGA+TGG | - | chr6_4:89798092-89798111 | Msa1002990:intron | 35.0% | |
| CTTTCAAGATGGATACTCAA+AGG | - | chr6_4:89798103-89798122 | Msa1002990:intron | 35.0% | |
| !! | AAATACGAGTGCTTGCTTTT+TGG | - | chr6_4:89798138-89798157 | Msa1002990:intron | 35.0% |
| !!! | TGCTTGCTTTTTGGTATGAA+TGG | - | chr6_4:89798147-89798166 | Msa1002990:intron | 35.0% |
| TTGATTATGGTTCCACATGT+TGG | - | chr6_4:89798252-89798271 | Msa1002990:CDS | 35.0% | |
| TATCTGTTGTTACCAACATG+TGG | + | chr6_4:89798267-89798286 | None:intergenic | 35.0% | |
| !! | CATGTTGGTAACAACAGATA+TGG | - | chr6_4:89798267-89798286 | Msa1002990:intron | 35.0% |
| AATTGATCCCTAAGCTCAAT+GGG | + | chr6_4:89798306-89798325 | None:intergenic | 35.0% | |
| AAATTGATCCCTAAGCTCAA+TGG | + | chr6_4:89798307-89798326 | None:intergenic | 35.0% | |
| ATTGAGCTTAGGGATCAATT+TGG | - | chr6_4:89798306-89798325 | Msa1002990:intron | 35.0% | |
| CTTGTTTACAGAGCATATGT+TGG | - | chr6_4:89798455-89798474 | Msa1002990:CDS | 35.0% | |
| TATAGTACCAAAGATGTGTC+TGG | - | chr6_4:89798500-89798519 | Msa1002990:CDS | 35.0% | |
| TACAAATCCAGACACATCTT+TGG | + | chr6_4:89798510-89798529 | None:intergenic | 35.0% | |
| ! | CTGGATTTGTATCTAGAACA+TGG | - | chr6_4:89798519-89798538 | Msa1002990:CDS | 35.0% |
| ! | TCTAGAACATGGAACAACTA+TGG | - | chr6_4:89798530-89798549 | Msa1002990:CDS | 35.0% |
| ATTGTCAAATTCGTAGCCAA+GGG | + | chr6_4:89798686-89798705 | None:intergenic | 35.0% | |
| GTAAAATCGTACGTGGAAAA+AGG | - | chr6_4:89798800-89798819 | Msa1002990:intron | 35.0% | |
| AATTCTAATAGCAGCCTCAA+AGG | + | chr6_4:89799035-89799054 | None:intergenic | 35.0% | |
| !!! | ATCTCTCCATGTCACTTTTT+AGG | + | chr6_4:89799099-89799118 | None:intergenic | 35.0% |
| TTCCAAGAGTTTCAAACCTA+GGG | + | chr6_4:89799160-89799179 | None:intergenic | 35.0% | |
| ATTCCAAGAGTTTCAAACCT+AGG | + | chr6_4:89799161-89799180 | None:intergenic | 35.0% | |
| AGTGTTAGAAATGTTGCAAG+CGG | - | chr6_4:89799229-89799248 | Msa1002990:intron | 35.0% | |
| ! | AACAACATATTGATGACAGG+TGG | - | chr6_4:89799375-89799394 | Msa1002990:exon | 35.0% |
| ! | ACAACATATTGATGACAGGT+GGG | - | chr6_4:89799376-89799395 | Msa1002990:exon | 35.0% |
| !! | GAGAAGCATTACCTGAAATA+TGG | - | chr6_4:89799455-89799474 | Msa1002990:intron | 35.0% |
| !! | GAGATTGGATCATTTGTTGT+TGG | + | chr6_4:89799498-89799517 | None:intergenic | 35.0% |
| ATCGAAGCAAAACTTATGCA+TGG | + | chr6_4:89799540-89799559 | None:intergenic | 35.0% | |
| ! | TAATTTTGTAATGGCCTCCA+TGG | - | chr6_4:89799635-89799654 | Msa1002990:intron | 35.0% |
| TTGCAATTGGCATCACAAAA+TGG | - | chr6_4:89799684-89799703 | Msa1002990:intron | 35.0% | |
| ! | AACACCATAGTTTAAGGTCC+AGG | - | chr6_4:89797624-89797643 | Msa1002990:three_prime_UTR | 40.0% |
| GACCTTAATGAAAGGTGGAA+TGG | + | chr6_4:89797680-89797699 | None:intergenic | 40.0% | |
| ATGGATACTCAAAGGATTGC+TGG | - | chr6_4:89798111-89798130 | Msa1002990:intron | 40.0% | |
| AACAACTATGGCAGGAATGA+AGG | - | chr6_4:89798542-89798561 | Msa1002990:CDS | 40.0% | |
| ! | GGAATGAAGGTATGCAGATT+TGG | - | chr6_4:89798555-89798574 | Msa1002990:CDS | 40.0% |
| CATTGTCAAATTCGTAGCCA+AGG | + | chr6_4:89798687-89798706 | None:intergenic | 40.0% | |
| GAGTTTCATGCTTATGTGCA+TGG | - | chr6_4:89798709-89798728 | Msa1002990:CDS | 40.0% | |
| ! | TCTGGCTTCAGTTTCTCATA+TGG | + | chr6_4:89798742-89798761 | None:intergenic | 40.0% |
| TGAAGCCAGATTTCGTGTTA+AGG | - | chr6_4:89798752-89798771 | Msa1002990:CDS | 40.0% | |
| AGGTTCCTTAACACGAAATC+TGG | + | chr6_4:89798760-89798779 | None:intergenic | 40.0% | |
| !! | TTCGTTGGTAGGAGTTGATA+GGG | + | chr6_4:89798988-89799007 | None:intergenic | 40.0% |
| ! | ATTCGTTGGTAGGAGTTGAT+AGG | + | chr6_4:89798989-89799008 | None:intergenic | 40.0% |
| TCCAAGAGTTTCAAACCTAG+GGG | + | chr6_4:89799159-89799178 | None:intergenic | 40.0% | |
| TATGAATGCTGTTCAGAGCA+TGG | + | chr6_4:89799429-89799448 | None:intergenic | 40.0% | |
| AGCATTACCTGAAATATGGG+AGG | - | chr6_4:89799459-89799478 | Msa1002990:intron | 40.0% | |
| TCTTCAACCTCCCATATTTC+AGG | + | chr6_4:89799469-89799488 | None:intergenic | 40.0% | |
| AGATAGACAAAACTCTGCTG+AGG | + | chr6_4:89799605-89799624 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr6_4:89799761-89799780 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr6_4:89799793-89799812 | Msa1002990:intron | 40.0% |
| AGTCTACCTTGCACAAACTA+GGG | + | chr6_4:89799824-89799843 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAAACT+AGG | + | chr6_4:89799825-89799844 | None:intergenic | 40.0% | |
| ! | AACACCATAGTTTAAGGTCC+AGG | - | chr6_4:89797624-89797643 | Msa1002990:three_prime_UTR | 40.0% |
| GACCTTAATGAAAGGTGGAA+TGG | + | chr6_4:89797680-89797699 | None:intergenic | 40.0% | |
| ATGGATACTCAAAGGATTGC+TGG | - | chr6_4:89798111-89798130 | Msa1002990:intron | 40.0% | |
| AACAACTATGGCAGGAATGA+AGG | - | chr6_4:89798542-89798561 | Msa1002990:CDS | 40.0% | |
| ! | GGAATGAAGGTATGCAGATT+TGG | - | chr6_4:89798555-89798574 | Msa1002990:CDS | 40.0% |
| CATTGTCAAATTCGTAGCCA+AGG | + | chr6_4:89798687-89798706 | None:intergenic | 40.0% | |
| GAGTTTCATGCTTATGTGCA+TGG | - | chr6_4:89798709-89798728 | Msa1002990:CDS | 40.0% | |
| ! | TCTGGCTTCAGTTTCTCATA+TGG | + | chr6_4:89798742-89798761 | None:intergenic | 40.0% |
| TGAAGCCAGATTTCGTGTTA+AGG | - | chr6_4:89798752-89798771 | Msa1002990:CDS | 40.0% | |
| AGGTTCCTTAACACGAAATC+TGG | + | chr6_4:89798760-89798779 | None:intergenic | 40.0% | |
| !! | TTCGTTGGTAGGAGTTGATA+GGG | + | chr6_4:89798988-89799007 | None:intergenic | 40.0% |
| ! | ATTCGTTGGTAGGAGTTGAT+AGG | + | chr6_4:89798989-89799008 | None:intergenic | 40.0% |
| TCCAAGAGTTTCAAACCTAG+GGG | + | chr6_4:89799159-89799178 | None:intergenic | 40.0% | |
| TATGAATGCTGTTCAGAGCA+TGG | + | chr6_4:89799429-89799448 | None:intergenic | 40.0% | |
| AGCATTACCTGAAATATGGG+AGG | - | chr6_4:89799459-89799478 | Msa1002990:intron | 40.0% | |
| TCTTCAACCTCCCATATTTC+AGG | + | chr6_4:89799469-89799488 | None:intergenic | 40.0% | |
| AGATAGACAAAACTCTGCTG+AGG | + | chr6_4:89799605-89799624 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr6_4:89799761-89799780 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr6_4:89799793-89799812 | Msa1002990:intron | 40.0% |
| AGTCTACCTTGCACAAACTA+GGG | + | chr6_4:89799824-89799843 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAAACT+AGG | + | chr6_4:89799825-89799844 | None:intergenic | 40.0% | |
| ACTCTCTACCCATTGAGCTT+AGG | - | chr6_4:89798295-89798314 | Msa1002990:intron | 45.0% | |
| CTCTCTACCCATTGAGCTTA+GGG | - | chr6_4:89798296-89798315 | Msa1002990:intron | 45.0% | |
| GCATGTCGCAAGAACATACA+AGG | - | chr6_4:89798328-89798347 | Msa1002990:intron | 45.0% | |
| GAACATGGAACAACTATGGC+AGG | - | chr6_4:89798534-89798553 | Msa1002990:CDS | 45.0% | |
| TTAATTTCCTGTCAGGCCCT+TGG | - | chr6_4:89798667-89798686 | Msa1002990:intron | 45.0% | |
| ! | TACGATTTTACGCTGAGGCA+TGG | + | chr6_4:89798791-89798810 | None:intergenic | 45.0% |
| ! | TGGCTTGGAAGATTGCTTTG+AGG | - | chr6_4:89798937-89798956 | Msa1002990:CDS | 45.0% |
| GGCTTGGAAGATTGCTTTGA+GGG | - | chr6_4:89798938-89798957 | Msa1002990:CDS | 45.0% | |
| TTTGCAGAGGATTCGTTGGT+AGG | + | chr6_4:89798999-89799018 | None:intergenic | 45.0% | |
| ! | ATGGTTTGCAGAGGATTCGT+TGG | + | chr6_4:89799003-89799022 | None:intergenic | 45.0% |
| AATCCTCTGCAAACCATCTG+TGG | - | chr6_4:89799006-89799025 | Msa1002990:CDS | 45.0% | |
| ! | ACCCCTAGGTTTGAAACTCT+TGG | - | chr6_4:89799155-89799174 | Msa1002990:CDS | 45.0% |
| CAAAACTTATGCATGGACCG+TGG | + | chr6_4:89799533-89799552 | None:intergenic | 45.0% | |
| ATTTAAGCACCACCATGCCA+TGG | + | chr6_4:89799655-89799674 | None:intergenic | 45.0% | |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr6_4:89799789-89799808 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr6_4:89799863-89799882 | None:intergenic | 45.0% |
| ACTCTCTACCCATTGAGCTT+AGG | - | chr6_4:89798295-89798314 | Msa1002990:intron | 45.0% | |
| CTCTCTACCCATTGAGCTTA+GGG | - | chr6_4:89798296-89798315 | Msa1002990:intron | 45.0% | |
| GCATGTCGCAAGAACATACA+AGG | - | chr6_4:89798328-89798347 | Msa1002990:intron | 45.0% | |
| GAACATGGAACAACTATGGC+AGG | - | chr6_4:89798534-89798553 | Msa1002990:CDS | 45.0% | |
| TTAATTTCCTGTCAGGCCCT+TGG | - | chr6_4:89798667-89798686 | Msa1002990:intron | 45.0% | |
| ! | TACGATTTTACGCTGAGGCA+TGG | + | chr6_4:89798791-89798810 | None:intergenic | 45.0% |
| ! | TGGCTTGGAAGATTGCTTTG+AGG | - | chr6_4:89798937-89798956 | Msa1002990:CDS | 45.0% |
| GGCTTGGAAGATTGCTTTGA+GGG | - | chr6_4:89798938-89798957 | Msa1002990:CDS | 45.0% | |
| TTTGCAGAGGATTCGTTGGT+AGG | + | chr6_4:89798999-89799018 | None:intergenic | 45.0% | |
| ! | ATGGTTTGCAGAGGATTCGT+TGG | + | chr6_4:89799003-89799022 | None:intergenic | 45.0% |
| AATCCTCTGCAAACCATCTG+TGG | - | chr6_4:89799006-89799025 | Msa1002990:CDS | 45.0% | |
| ! | ACCCCTAGGTTTGAAACTCT+TGG | - | chr6_4:89799155-89799174 | Msa1002990:CDS | 45.0% |
| CAAAACTTATGCATGGACCG+TGG | + | chr6_4:89799533-89799552 | None:intergenic | 45.0% | |
| ATTTAAGCACCACCATGCCA+TGG | + | chr6_4:89799655-89799674 | None:intergenic | 45.0% | |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr6_4:89799789-89799808 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr6_4:89799863-89799882 | None:intergenic | 45.0% |
| ! | CCACGTACGATTTTACGCTG+AGG | + | chr6_4:89798796-89798815 | None:intergenic | 50.0% |
| CCTCAGCGTAAAATCGTACG+TGG | - | chr6_4:89798793-89798812 | Msa1002990:CDS | 50.0% | |
| ATGCGGTTGAAGTTCTCAGC+AGG | - | chr6_4:89798912-89798931 | Msa1002990:intron | 50.0% | |
| GTTGAAGTTCTCAGCAGGCT+TGG | - | chr6_4:89798917-89798936 | Msa1002990:intron | 50.0% | |
| ! | CTTCCACAGATGGTTTGCAG+AGG | + | chr6_4:89799012-89799031 | None:intergenic | 50.0% |
| ACCATCTGTGGAAGCCTTTG+AGG | - | chr6_4:89799018-89799037 | Msa1002990:intron | 50.0% | |
| GTTGCAAGCGGAAAAGTAGC+TGG | - | chr6_4:89799241-89799260 | Msa1002990:intron | 50.0% | |
| ! | TTGATGACAGGTGGGTCGAT+CGG | - | chr6_4:89799384-89799403 | Msa1002990:exon | 50.0% |
| TGGCTTCGACTGCAAGAGAT+TGG | + | chr6_4:89799513-89799532 | None:intergenic | 50.0% | |
| ATCTCTTGCAGTCGAAGCCA+CGG | - | chr6_4:89799513-89799532 | Msa1002990:intron | 50.0% | |
| TTGTAATGGCCTCCATGGCA+TGG | - | chr6_4:89799640-89799659 | Msa1002990:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr6_4:89799815-89799834 | Msa1002990:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr6_4:89799857-89799876 | None:intergenic | 50.0% |
| ! | CCACGTACGATTTTACGCTG+AGG | + | chr6_4:89798796-89798815 | None:intergenic | 50.0% |
| CCTCAGCGTAAAATCGTACG+TGG | - | chr6_4:89798793-89798812 | Msa1002990:CDS | 50.0% | |
| ATGCGGTTGAAGTTCTCAGC+AGG | - | chr6_4:89798912-89798931 | Msa1002990:intron | 50.0% | |
| GTTGAAGTTCTCAGCAGGCT+TGG | - | chr6_4:89798917-89798936 | Msa1002990:intron | 50.0% | |
| ! | CTTCCACAGATGGTTTGCAG+AGG | + | chr6_4:89799012-89799031 | None:intergenic | 50.0% |
| ACCATCTGTGGAAGCCTTTG+AGG | - | chr6_4:89799018-89799037 | Msa1002990:intron | 50.0% | |
| GTTGCAAGCGGAAAAGTAGC+TGG | - | chr6_4:89799241-89799260 | Msa1002990:intron | 50.0% | |
| ! | TTGATGACAGGTGGGTCGAT+CGG | - | chr6_4:89799384-89799403 | Msa1002990:exon | 50.0% |
| TGGCTTCGACTGCAAGAGAT+TGG | + | chr6_4:89799513-89799532 | None:intergenic | 50.0% | |
| ATCTCTTGCAGTCGAAGCCA+CGG | - | chr6_4:89799513-89799532 | Msa1002990:intron | 50.0% | |
| TTGTAATGGCCTCCATGGCA+TGG | - | chr6_4:89799640-89799659 | Msa1002990:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr6_4:89799815-89799834 | Msa1002990:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr6_4:89799857-89799876 | None:intergenic | 50.0% |
| GCTGAGGCATGGAAAGCAGA+AGG | + | chr6_4:89798780-89798799 | None:intergenic | 55.0% | |
| CAACGCAGATCACGCACATG+CGG | - | chr6_4:89798895-89798914 | Msa1002990:intron | 55.0% | |
| AGTTCTCAGCAGGCTTGGCT+TGG | - | chr6_4:89798922-89798941 | Msa1002990:intron | 55.0% | |
| GCCTCAAAGGCTTCCACAGA+TGG | + | chr6_4:89799022-89799041 | None:intergenic | 55.0% | |
| GGTCGATCGGATTTAGTGCC+TGG | - | chr6_4:89799397-89799416 | Msa1002990:intron | 55.0% | |
| TTCAGAGCATGGTCAGCACC+AGG | + | chr6_4:89799418-89799437 | None:intergenic | 55.0% | |
| TAATGGCCTCCATGGCATGG+TGG | - | chr6_4:89799643-89799662 | Msa1002990:intron | 55.0% | |
| TAAGCACCACCATGCCATGG+AGG | + | chr6_4:89799652-89799671 | None:intergenic | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr6_4:89799768-89799787 | Msa1002990:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr6_4:89799852-89799871 | None:intergenic | 55.0% |
| GCTGAGGCATGGAAAGCAGA+AGG | + | chr6_4:89798780-89798799 | None:intergenic | 55.0% | |
| CAACGCAGATCACGCACATG+CGG | - | chr6_4:89798895-89798914 | Msa1002990:intron | 55.0% | |
| AGTTCTCAGCAGGCTTGGCT+TGG | - | chr6_4:89798922-89798941 | Msa1002990:intron | 55.0% | |
| GCCTCAAAGGCTTCCACAGA+TGG | + | chr6_4:89799022-89799041 | None:intergenic | 55.0% | |
| GGTCGATCGGATTTAGTGCC+TGG | - | chr6_4:89799397-89799416 | Msa1002990:intron | 55.0% | |
| TTCAGAGCATGGTCAGCACC+AGG | + | chr6_4:89799418-89799437 | None:intergenic | 55.0% | |
| TAATGGCCTCCATGGCATGG+TGG | - | chr6_4:89799643-89799662 | Msa1002990:intron | 55.0% | |
| TAAGCACCACCATGCCATGG+AGG | + | chr6_4:89799652-89799671 | None:intergenic | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr6_4:89799768-89799787 | Msa1002990:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr6_4:89799852-89799871 | None:intergenic | 55.0% |
| TTCGTAGCCAAGGGCCTGAC+AGG | + | chr6_4:89798677-89798696 | None:intergenic | 60.0% | |
| CGCATGTGCGTGATCTGCGT+TGG | + | chr6_4:89798897-89798916 | None:intergenic | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr6_4:89799842-89799861 | Msa1002990:intron | 60.0% | |
| TTCGTAGCCAAGGGCCTGAC+AGG | + | chr6_4:89798677-89798696 | None:intergenic | 60.0% | |
| CGCATGTGCGTGATCTGCGT+TGG | + | chr6_4:89798897-89798916 | None:intergenic | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr6_4:89799842-89799861 | Msa1002990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 89797607 | 89799891 | 89797607 | ID=Msa1002990;Name=Msa1002990 |
| chr6_4 | mRNA | 89797607 | 89799891 | 89797607 | ID=Msa1002990-mRNA-1;Parent=Msa1002990;Name=Msa1002990-mRNA-1;_AED=0.14;_eAED=0.14;_QI=57|1|1|1|0.85|0.75|8|345|249 |
| chr6_4 | exon | 89797607 | 89798104 | 89797607 | ID=Msa1002990-mRNA-1:exon:17502;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89798219 | 89798284 | 89798219 | ID=Msa1002990-mRNA-1:exon:17501;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89798420 | 89798611 | 89798420 | ID=Msa1002990-mRNA-1:exon:17500;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89798691 | 89798816 | 89798691 | ID=Msa1002990-mRNA-1:exon:17499;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89798935 | 89799032 | 89798935 | ID=Msa1002990-mRNA-1:exon:17498;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89799149 | 89799214 | 89799149 | ID=Msa1002990-mRNA-1:exon:17497;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89799339 | 89799405 | 89799339 | ID=Msa1002990-mRNA-1:exon:17496;Parent=Msa1002990-mRNA-1 |
| chr6_4 | exon | 89799853 | 89799891 | 89799853 | ID=Msa1002990-mRNA-1:exon:17495;Parent=Msa1002990-mRNA-1 |
| chr6_4 | five_prime_UTR | 89799853 | 89799891 | 89799853 | ID=Msa1002990-mRNA-1:five_prime_utr;Parent=Msa1002990-mRNA-1 |
| chr6_4 | five_prime_UTR | 89799388 | 89799405 | 89799388 | ID=Msa1002990-mRNA-1:five_prime_utr;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89799339 | 89799387 | 89799339 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89799149 | 89799214 | 89799149 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89798935 | 89799032 | 89798935 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89798691 | 89798816 | 89798691 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89798420 | 89798611 | 89798420 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89798219 | 89798284 | 89798219 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | CDS | 89797952 | 89798104 | 89797952 | ID=Msa1002990-mRNA-1:cds;Parent=Msa1002990-mRNA-1 |
| chr6_4 | three_prime_UTR | 89797607 | 89797951 | 89797607 | ID=Msa1002990-mRNA-1:three_prime_utr;Parent=Msa1002990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
