Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462060 | XP_003591148.1 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 2.29e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462060 | sp|Q5J907|TCTP_ELAGV | 90.476 | 168 | 16 | 0 | 1 | 168 | 1 | 168 | 1.02e-108 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462060 | G7I8P9 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 1.09e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa1462060 | 0.825240 | 5.221359e-54 | -8.615850e-47 |
| Msa0026650 | Msa1462060 | 0.806496 | 7.997945e-50 | -8.615850e-47 |
| Msa0029850 | Msa1462060 | 0.835245 | 1.877665e-56 | -8.615850e-47 |
| Msa0032860 | Msa1462060 | 0.821208 | 4.562157e-53 | -8.615850e-47 |
| Msa0032880 | Msa1462060 | 0.803114 | 4.068480e-49 | -8.615850e-47 |
| Msa0037880 | Msa1462060 | 0.800652 | 1.303592e-48 | -8.615850e-47 |
| Msa0042980 | Msa1462060 | -0.815767 | 7.807929e-52 | -8.615850e-47 |
| Msa0052030 | Msa1462060 | 0.803759 | 2.990115e-49 | -8.615850e-47 |
| Msa0077180 | Msa1462060 | 0.833958 | 3.953710e-56 | -8.615850e-47 |
| Msa0085720 | Msa1462060 | 0.801627 | 8.234071e-49 | -8.615850e-47 |
| Msa0096980 | Msa1462060 | 0.825184 | 5.383817e-54 | -8.615850e-47 |
| Msa0108560 | Msa1462060 | 0.807807 | 4.219876e-50 | -8.615850e-47 |
| Msa1348600 | Msa1462060 | 0.829859 | 4.065440e-55 | -8.615850e-47 |
| Msa1357430 | Msa1462060 | 0.824826 | 6.541441e-54 | -8.615850e-47 |
| Msa1364370 | Msa1462060 | 0.808434 | 3.102540e-50 | -8.615850e-47 |
| Msa1376160 | Msa1462060 | -0.804238 | 2.377942e-49 | -8.615850e-47 |
| Msa1392160 | Msa1462060 | -0.807823 | 4.187721e-50 | -8.615850e-47 |
| Msa1397120 | Msa1462060 | 0.801927 | 7.147457e-49 | -8.615850e-47 |
| Msa1407600 | Msa1462060 | 0.805141 | 1.540434e-49 | -8.615850e-47 |
| Msa1437130 | Msa1462060 | 0.803949 | 2.731137e-49 | -8.615850e-47 |
| Msa1444250 | Msa1462060 | -0.859010 | 5.557140e-63 | -8.615850e-47 |
| Msa1451620 | Msa1462060 | -0.804055 | 2.595163e-49 | -8.615850e-47 |
| Msa1462060 | Msa1462070 | 0.810869 | 9.302837e-51 | -8.615850e-47 |
| Msa0615340 | Msa1462060 | 0.812690 | 3.733550e-51 | -8.615850e-47 |
| Msa0628740 | Msa1462060 | 0.816068 | 6.691675e-52 | -8.615850e-47 |
| Msa0630950 | Msa1462060 | 0.801220 | 9.980245e-49 | -8.615850e-47 |
| Msa0631990 | Msa1462060 | 0.820364 | 7.131283e-53 | -8.615850e-47 |
| Msa0649130 | Msa1462060 | 0.808595 | 2.867728e-50 | -8.615850e-47 |
| Msa0666140 | Msa1462060 | 0.815484 | 9.027815e-52 | -8.615850e-47 |
| Msa0670660 | Msa1462060 | 0.825662 | 4.148351e-54 | -8.615850e-47 |
| Msa0673470 | Msa1462060 | 0.820919 | 5.317354e-53 | -8.615850e-47 |
| Msa0704730 | Msa1462060 | 0.823263 | 1.521510e-53 | -8.615850e-47 |
| Msa0723110 | Msa1462060 | 0.805289 | 1.434368e-49 | -8.615850e-47 |
| Msa0724560 | Msa1462060 | 0.810180 | 1.310297e-50 | -8.615850e-47 |
| Msa0732880 | Msa1462060 | 0.813536 | 2.435204e-51 | -8.615850e-47 |
| Msa0747260 | Msa1462060 | 0.880277 | 6.265935e-70 | -8.615850e-47 |
| Msa0751210 | Msa1462060 | 0.801799 | 7.592200e-49 | -8.615850e-47 |
| Msa0793240 | Msa1462060 | 0.957270 | 4.067204e-115 | -8.615850e-47 |
| Msa0801740 | Msa1462060 | 0.827939 | 1.185832e-54 | -8.615850e-47 |
| Msa0831590 | Msa1462060 | 0.805003 | 1.646473e-49 | -8.615850e-47 |
| Msa0840250 | Msa1462060 | 0.800089 | 1.697258e-48 | -8.615850e-47 |
| Msa0124550 | Msa1462060 | 0.802548 | 5.323551e-49 | -8.615850e-47 |
| Msa0125050 | Msa1462060 | 0.836790 | 7.609516e-57 | -8.615850e-47 |
| Msa0145010 | Msa1462060 | 0.823563 | 1.295001e-53 | -8.615850e-47 |
| Msa0169820 | Msa1462060 | 0.837883 | 3.996581e-57 | -8.615850e-47 |
| Msa0175050 | Msa1462060 | 0.812093 | 5.041468e-51 | -8.615850e-47 |
| Msa0178860 | Msa1462060 | -0.832363 | 9.866390e-56 | -8.615850e-47 |
| Msa0183010 | Msa1462060 | -0.827207 | 1.776813e-54 | -8.615850e-47 |
| Msa0187060 | Msa1462060 | 0.816394 | 5.658033e-52 | -8.615850e-47 |
| Msa0187220 | Msa1462060 | 0.991538 | 3.481721e-188 | -8.615850e-47 |
| Msa0187230 | Msa1462060 | 0.818117 | 2.316666e-52 | -8.615850e-47 |
| Msa0230640 | Msa1462060 | -0.829837 | 4.116136e-55 | -8.615850e-47 |
| Msa1224580 | Msa1462060 | -0.816964 | 4.214408e-52 | -8.615850e-47 |
| Msa1225730 | Msa1462060 | -0.801672 | 8.061352e-49 | -8.615850e-47 |
| Msa1235400 | Msa1462060 | 0.814230 | 1.713001e-51 | -8.615850e-47 |
| Msa1258380 | Msa1462060 | -0.847976 | 8.224820e-60 | -8.615850e-47 |
| Msa1270660 | Msa1462060 | 0.814281 | 1.668536e-51 | -8.615850e-47 |
| Msa1270730 | Msa1462060 | 0.828076 | 1.098889e-54 | -8.615850e-47 |
| Msa1276510 | Msa1462060 | 0.812106 | 5.009460e-51 | -8.615850e-47 |
| Msa1307740 | Msa1462060 | 0.851197 | 1.038360e-60 | -8.615850e-47 |
| Msa1314770 | Msa1462060 | 0.823826 | 1.123983e-53 | -8.615850e-47 |
| Msa1335230 | Msa1462060 | 0.805274 | 1.444719e-49 | -8.615850e-47 |
| Msa0376910 | Msa1462060 | 0.807619 | 4.626338e-50 | -8.615850e-47 |
| Msa0388840 | Msa1462060 | 0.800401 | 1.466093e-48 | -8.615850e-47 |
| Msa0389810 | Msa1462060 | 0.844886 | 5.727656e-59 | -8.615850e-47 |
| Msa0394340 | Msa1462060 | 0.842607 | 2.332684e-58 | -8.615850e-47 |
| Msa0433410 | Msa1462060 | -0.806912 | 6.531123e-50 | -8.615850e-47 |
| Msa0433530 | Msa1462060 | 0.812729 | 3.661613e-51 | -8.615850e-47 |
| Msa0436190 | Msa1462060 | 0.811734 | 6.038325e-51 | -8.615850e-47 |
| Msa0442200 | Msa1462060 | 0.803366 | 3.607867e-49 | -8.615850e-47 |
| Msa0468130 | Msa1462060 | 0.837180 | 6.051364e-57 | -8.615850e-47 |
| Msa0471900 | Msa1462060 | 0.809568 | 1.774513e-50 | -8.615850e-47 |
| Msa0472960 | Msa1462060 | -0.816842 | 4.489810e-52 | -8.615850e-47 |
| Msa0477130 | Msa1462060 | -0.816318 | 5.883201e-52 | -8.615850e-47 |
| Msa0477260 | Msa1462060 | 0.809224 | 2.102898e-50 | -8.615850e-47 |
| Msa0482190 | Msa1462060 | -0.847915 | 8.547441e-60 | -8.615850e-47 |
| Msa0982270 | Msa1462060 | 0.844916 | 5.621751e-59 | -8.615850e-47 |
| Msa0994370 | Msa1462060 | 0.814635 | 1.393305e-51 | -8.615850e-47 |
| Msa1092090 | Msa1462060 | 0.802752 | 4.833313e-49 | -8.615850e-47 |
| Msa0271580 | Msa1462060 | 0.802842 | 4.630629e-49 | -8.615850e-47 |
| Msa0279210 | Msa1462060 | -0.829821 | 4.152729e-55 | -8.615850e-47 |
| Msa0307470 | Msa1462060 | 0.827995 | 1.149703e-54 | -8.615850e-47 |
| Msa0318970 | Msa1462060 | -0.812888 | 3.379381e-51 | -8.615850e-47 |
| Msa0337590 | Msa1462060 | 0.800237 | 1.583809e-48 | -8.615850e-47 |
| Msa0347610 | Msa1462060 | 0.836623 | 8.393685e-57 | -8.615850e-47 |
| Msa1124540 | Msa1462060 | -0.807223 | 5.613725e-50 | -8.615850e-47 |
| Msa1163590 | Msa1462060 | -0.803028 | 4.239119e-49 | -8.615850e-47 |
| Msa1174310 | Msa1462060 | 0.827914 | 1.202115e-54 | -8.615850e-47 |
| Msa1183100 | Msa1462060 | -0.811056 | 8.472146e-51 | -8.615850e-47 |
| Msa1202770 | Msa1462060 | -0.803081 | 4.133429e-49 | -8.615850e-47 |
| Msa1217430 | Msa1462060 | -0.805237 | 1.470768e-49 | -8.615850e-47 |
| Msa0485500 | Msa1462060 | -0.846123 | 2.646802e-59 | -8.615850e-47 |
| Msa0489610 | Msa1462060 | 0.837991 | 3.747790e-57 | -8.615850e-47 |
| Msa0526670 | Msa1462060 | -0.831227 | 1.881527e-55 | -8.615850e-47 |
| Msa0526740 | Msa1462060 | -0.803058 | 4.178402e-49 | -8.615850e-47 |
| Msa0534410 | Msa1462060 | 0.810908 | 9.122327e-51 | -8.615850e-47 |
| Msa0570330 | Msa1462060 | 0.824589 | 7.436435e-54 | -8.615850e-47 |
| Msa0577120 | Msa1462060 | 0.810554 | 1.088208e-50 | -8.615850e-47 |
| Msa0588240 | Msa1462060 | 0.813774 | 2.158978e-51 | -8.615850e-47 |
| Msa0843250 | Msa1462060 | 0.800124 | 1.669765e-48 | -8.615850e-47 |
| Msa0864470 | Msa1462060 | -0.805747 | 1.149530e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462060 | MtrunA17_Chr1g0192171 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 2.11e-120 | 336 |
| Msa1462060 | MtrunA17_Chr1g0192201 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 1.45e-119 | 334 |
| Msa1462060 | MtrunA17_Chr2g0295871 | 85.714 | 168 | 23 | 1 | 1 | 168 | 1 | 167 | 4.80e-102 | 290 |
| Msa1462060 | MtrunA17_Chr6g0479151 | 80.745 | 161 | 30 | 1 | 1 | 161 | 1 | 160 | 1.46e-89 | 258 |
| Msa1462060 | MtrunA17_Chr1g0192161 | 86.047 | 129 | 18 | 0 | 19 | 147 | 9 | 137 | 3.50e-65 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462060 | AT3G16640.1 | 78.571 | 168 | 36 | 0 | 1 | 168 | 1 | 168 | 8.10e-96 | 275 |
| Msa1462060 | AT3G05540.1 | 79.882 | 169 | 32 | 2 | 1 | 168 | 1 | 168 | 5.27e-89 | 257 |
Find 47 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATTGTTGACACTTTC+AGG | 0.110440 | tig0041894:-7218 | Msa1462060:CDS |
| TTATGTTACTCTAGTGATTT+TGG | 0.128436 | tig0041894:-6574 | Msa1462060:intron |
| AATTGTAGGTCCTTGAGTTT+AGG | 0.253357 | tig0041894:+7054 | Msa1462050:intron |
| TCCATTCTCAATTTCCTTGC+AGG | 0.264878 | tig0041894:+7484 | Msa1462050:intron |
| ATTGTAGGTCCTTGAGTTTA+GGG | 0.271566 | tig0041894:+7055 | Msa1462050:intron |
| GTATACCAGGATCTTCTTAC+AGG | 0.300413 | tig0041894:-8096 | Msa1462060:intron |
| TGTTGACACTTTCAGGCTTC+AGG | 0.310211 | tig0041894:-7211 | Msa1462060:CDS |
| GCACGTTTAGTTATCATGTT+AGG | 0.330126 | tig0041894:-6609 | Msa1462060:three_prime_UTR |
| CTACTTTGCCTATGGCTTGA+AGG | 0.378916 | tig0041894:-6646 | Msa1462060:CDS |
| AACAATATCAACCACTTTGA+CGG | 0.381711 | tig0041894:+7230 | Msa1462050:intron |
| GATGAAATACATACAATTGT+AGG | 0.387035 | tig0041894:+7040 | Msa1462050:intron |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | tig0041894:+7183 | Msa1462050:intron |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | tig0041894:-6694 | Msa1462060:CDS |
| GAATGGAATGTTGTGGGAAG+TGG | 0.459626 | tig0041894:-7468 | Msa1462060:CDS |
| CCATTCTCAATTTCCTTGCA+GGG | 0.465811 | tig0041894:+7485 | Msa1462050:intron |
| TAGGCAAAGTAGAGAAAAGT+TGG | 0.474181 | tig0041894:+6657 | Msa1462050:intron |
| TCGTCTCCACCCTCTGCAGA+AGG | 0.482179 | tig0041894:+7276 | Msa1462050:intron |
| TATTTGCAGTGGGTTGTTCA+AGG | 0.483236 | tig0041894:-7327 | Msa1462060:intron |
| AAGAAGAGAGAACTAAAAGA+AGG | 0.488362 | tig0041894:+8156 | Msa1462050:intron |
| CCCTGCAAGGAAATTGAGAA+TGG | 0.490398 | tig0041894:-7485 | Msa1462060:CDS |
| CTTGATTTCCTTCAAGCCAT+AGG | 0.498561 | tig0041894:+6638 | Msa1462050:intron |
| AGTGAGATTGAATAGAATAG+AGG | 0.498595 | tig0041894:+8199 | Msa1462050:intron |
| GGAGCAGTGGATGTGAATAT+TGG | 0.501116 | tig0041894:-7306 | Msa1462060:CDS |
| GGTGCTAACCCTTCTGCAGA+GGG | 0.509467 | tig0041894:-7285 | Msa1462060:CDS |
| TGTAACCATGCTTGTATACC+AGG | 0.532022 | tig0041894:-8109 | Msa1462060:exon |
| CTCTGACTCATTCCCCTGCA+AGG | 0.534349 | tig0041894:-7498 | Msa1462060:CDS |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | tig0041894:-6690 | Msa1462060:CDS |
| GGTCCTTGAGTTTAGGGAGA+AGG | 0.545288 | tig0041894:+7061 | Msa1462050:intron |
| GTTCCTTCTCCCTAAACTCA+AGG | 0.563294 | tig0041894:-7064 | Msa1462060:CDS |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | tig0041894:-6720 | Msa1462060:CDS |
| CATTCTCAATTTCCTTGCAG+GGG | 0.578074 | tig0041894:+7486 | Msa1462050:intron |
| CGTCTCCACCCTCTGCAGAA+GGG | 0.579433 | tig0041894:+7277 | Msa1462050:intron |
| ATTTACCTGTAAGAAGATCC+TGG | 0.582754 | tig0041894:+8091 | Msa1462050:intron |
| GTTGTGGGAAGTGGAAGGAA+AGG | 0.585239 | tig0041894:-7459 | Msa1462060:intron |
| GAGATTGAATAGAATAGAGG+TGG | 0.587539 | tig0041894:+8202 | Msa1462050:intron |
| AATTGAGAATGGAATGTTGT+GGG | 0.593952 | tig0041894:-7474 | Msa1462060:CDS |
| TTCTGCAGAGGGTGGAGACG+AGG | 0.598044 | tig0041894:-7274 | Msa1462060:CDS |
| GCTAACCCTTCTGCAGAGGG+TGG | 0.604009 | tig0041894:-7282 | Msa1462060:CDS |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | tig0041894:+6665 | Msa1462050:intron |
| GAGGGTGGAGACGAGGATGA+CGG | 0.612656 | tig0041894:-7267 | Msa1462060:CDS |
| TGGTGCTAACCCTTCTGCAG+AGG | 0.618744 | tig0041894:-7286 | Msa1462060:CDS |
| AAGATCCTGGTATACAAGCA+TGG | 0.621063 | tig0041894:+8104 | Msa1462050:intron |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | tig0041894:+6694 | Msa1462050:intron |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | tig0041894:-7319 | Msa1462060:CDS |
| GGAATGTTGTGGGAAGTGGA+AGG | 0.687071 | tig0041894:-7464 | Msa1462060:CDS |
| TGATGATCAAGCCGTCAAAG+TGG | 0.714042 | tig0041894:-7241 | Msa1462060:CDS |
| AAATTGAGAATGGAATGTTG+TGG | 0.718062 | tig0041894:-7475 | Msa1462060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAGATTATTTATTTAT+GGG | + | tig0041894:7914-7933 | Msa1462050:intron | 10.0% |
| !! | AGTAAAGATTATTTATTTAT+GGG | + | tig0041894:7914-7933 | Msa1462050:intron | 10.0% |
| !!! | AATTATTTAAAACTAAAGTG+AGG | + | tig0041894:6773-6792 | Msa1462050:intron | 15.0% |
| !!! | ATATTAGAGATTATTGTTTT+TGG | - | tig0041894:7098-7117 | Msa1462060:CDS | 15.0% |
| !! | CTAATTTATGAACATATATT+TGG | + | tig0041894:7312-7331 | Msa1462050:intron | 15.0% |
| !!! | TTATCTTTCATCTTTTTATT+TGG | - | tig0041894:7671-7690 | Msa1462060:intron | 15.0% |
| !! | CAGTAAAGATTATTTATTTA+TGG | + | tig0041894:7915-7934 | Msa1462050:intron | 15.0% |
| !!! | AATTATTTAAAACTAAAGTG+AGG | + | tig0041894:6773-6792 | Msa1462050:intron | 15.0% |
| !!! | ATATTAGAGATTATTGTTTT+TGG | - | tig0041894:7098-7117 | Msa1462060:CDS | 15.0% |
| !! | CTAATTTATGAACATATATT+TGG | + | tig0041894:7312-7331 | Msa1462050:intron | 15.0% |
| !!! | TTATCTTTCATCTTTTTATT+TGG | - | tig0041894:7671-7690 | Msa1462060:intron | 15.0% |
| !! | CAGTAAAGATTATTTATTTA+TGG | + | tig0041894:7915-7934 | Msa1462050:intron | 15.0% |
| !!! | TAAAACTTCTCTGTTTTTAT+GGG | + | tig0041894:6869-6888 | Msa1462050:intron | 20.0% |
| !!! | TTAAAACTTCTCTGTTTTTA+TGG | + | tig0041894:6870-6889 | Msa1462050:intron | 20.0% |
| !!! | ATAAAAACAGAGAAGTTTTA+AGG | - | tig0041894:6869-6888 | Msa1462060:intron | 20.0% |
| !! | TAAGAGATAATCATGTTTAA+GGG | + | tig0041894:7027-7046 | Msa1462050:intron | 20.0% |
| !! | TTAAGAGATAATCATGTTTA+AGG | + | tig0041894:7028-7047 | Msa1462050:intron | 20.0% |
| !! | CTTAATCTAATACTTGATTA+TGG | - | tig0041894:7043-7062 | Msa1462060:intron | 20.0% |
| !! | TAGAAAGAAACATTATAGAA+AGG | + | tig0041894:7268-7287 | Msa1462050:intron | 20.0% |
| !!! | TCTTTTTTGTGGATAAATAA+AGG | - | tig0041894:7709-7728 | Msa1462060:intron | 20.0% |
| !!! | CTTTTTTGTGGATAAATAAA+GGG | - | tig0041894:7710-7729 | Msa1462060:intron | 20.0% |
| !!! | TAAAACTTCTCTGTTTTTAT+GGG | + | tig0041894:6869-6888 | Msa1462050:intron | 20.0% |
| !!! | TTAAAACTTCTCTGTTTTTA+TGG | + | tig0041894:6870-6889 | Msa1462050:intron | 20.0% |
| !!! | ATAAAAACAGAGAAGTTTTA+AGG | - | tig0041894:6869-6888 | Msa1462060:intron | 20.0% |
| !! | TAAGAGATAATCATGTTTAA+GGG | + | tig0041894:7027-7046 | Msa1462050:intron | 20.0% |
| !! | TTAAGAGATAATCATGTTTA+AGG | + | tig0041894:7028-7047 | Msa1462050:intron | 20.0% |
| !! | CTTAATCTAATACTTGATTA+TGG | - | tig0041894:7043-7062 | Msa1462060:intron | 20.0% |
| !! | TAGAAAGAAACATTATAGAA+AGG | + | tig0041894:7268-7287 | Msa1462050:intron | 20.0% |
| !!! | TCTTTTTTGTGGATAAATAA+AGG | - | tig0041894:7709-7728 | Msa1462060:intron | 20.0% |
| !!! | CTTTTTTGTGGATAAATAAA+GGG | - | tig0041894:7710-7729 | Msa1462060:intron | 20.0% |
| ! | AAAAATCTCAAAGATGATGA+TGG | + | tig0041894:6622-6641 | Msa1462050:intron | 25.0% |
| !! | TCGTTTGTATTTCTTTTCAT+AGG | - | tig0041894:6653-6672 | Msa1462060:CDS | 25.0% |
| ! | GAAATTCATTCACTAAATAC+AGG | + | tig0041894:6714-6733 | Msa1462050:intron | 25.0% |
| ! | TTGTGACAGGATTAAATTTA+TGG | - | tig0041894:6968-6987 | Msa1462060:intron | 25.0% |
| ! | ATTACACAACAATCAACTTT+AGG | + | tig0041894:7335-7354 | Msa1462050:intron | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | + | tig0041894:7650-7669 | Msa1462050:intron | 25.0% |
| !!! | ATTAAGTTCTCTCTTTTTTG+TGG | - | tig0041894:7698-7717 | Msa1462060:intron | 25.0% |
| !! | TTATGTTACTCTAGTGATTT+TGG | - | tig0041894:8113-8132 | Msa1462060:exon | 25.0% |
| !! | TATGTTACTCTAGTGATTTT+GGG | - | tig0041894:8114-8133 | Msa1462060:exon | 25.0% |
| !! | GAGTTTCGTATTTTCTAATT+AGG | - | tig0041894:8169-8188 | Msa1462060:five_prime_UTR | 25.0% |
| ! | AAAAATCTCAAAGATGATGA+TGG | + | tig0041894:6622-6641 | Msa1462050:intron | 25.0% |
| !! | TCGTTTGTATTTCTTTTCAT+AGG | - | tig0041894:6653-6672 | Msa1462060:CDS | 25.0% |
| ! | GAAATTCATTCACTAAATAC+AGG | + | tig0041894:6714-6733 | Msa1462050:intron | 25.0% |
| ! | TTGTGACAGGATTAAATTTA+TGG | - | tig0041894:6968-6987 | Msa1462060:intron | 25.0% |
| ! | ATTACACAACAATCAACTTT+AGG | + | tig0041894:7335-7354 | Msa1462050:intron | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | + | tig0041894:7650-7669 | Msa1462050:intron | 25.0% |
| !!! | ATTAAGTTCTCTCTTTTTTG+TGG | - | tig0041894:7698-7717 | Msa1462060:intron | 25.0% |
| !! | TTATGTTACTCTAGTGATTT+TGG | - | tig0041894:8113-8132 | Msa1462060:exon | 25.0% |
| !! | TATGTTACTCTAGTGATTTT+GGG | - | tig0041894:8114-8133 | Msa1462060:exon | 25.0% |
| !! | GAGTTTCGTATTTTCTAATT+AGG | - | tig0041894:8169-8188 | Msa1462060:five_prime_UTR | 25.0% |
| AGTGAGATTGAATAGAATAG+AGG | + | tig0041894:6491-6510 | Msa1462050:intron | 30.0% | |
| AAGAAGAGAGAACTAAAAGA+AGG | + | tig0041894:6534-6553 | Msa1462050:intron | 30.0% | |
| ! | TTATGTTGTTTGTGTTCTGT+TGG | - | tig0041894:6913-6932 | Msa1462060:intron | 30.0% |
| !!! | TTATTGTTTTTGGTTGCTGA+TGG | - | tig0041894:7108-7127 | Msa1462060:CDS | 30.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | tig0041894:7212-7231 | Msa1462060:CDS | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | tig0041894:7213-7232 | Msa1462060:CDS | 30.0% | |
| TGTAATGTGATTATTTGCAG+TGG | - | tig0041894:7349-7368 | Msa1462060:intron | 30.0% | |
| GTAATGTGATTATTTGCAGT+GGG | - | tig0041894:7350-7369 | Msa1462060:intron | 30.0% | |
| AACAATATCAACCACTTTGA+CGG | + | tig0041894:7460-7479 | Msa1462050:intron | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | tig0041894:7469-7488 | Msa1462060:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | tig0041894:7507-7526 | Msa1462050:intron | 30.0% | |
| !! | AATCAATGTTGCAGTTTTGT+TGG | - | tig0041894:7946-7965 | Msa1462060:intron | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | - | tig0041894:7947-7966 | Msa1462060:intron | 30.0% |
| AGTGAGATTGAATAGAATAG+AGG | + | tig0041894:6491-6510 | Msa1462050:intron | 30.0% | |
| AAGAAGAGAGAACTAAAAGA+AGG | + | tig0041894:6534-6553 | Msa1462050:intron | 30.0% | |
| ! | TTATGTTGTTTGTGTTCTGT+TGG | - | tig0041894:6913-6932 | Msa1462060:intron | 30.0% |
| !!! | TTATTGTTTTTGGTTGCTGA+TGG | - | tig0041894:7108-7127 | Msa1462060:CDS | 30.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | tig0041894:7212-7231 | Msa1462060:CDS | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | tig0041894:7213-7232 | Msa1462060:CDS | 30.0% | |
| TGTAATGTGATTATTTGCAG+TGG | - | tig0041894:7349-7368 | Msa1462060:intron | 30.0% | |
| GTAATGTGATTATTTGCAGT+GGG | - | tig0041894:7350-7369 | Msa1462060:intron | 30.0% | |
| AACAATATCAACCACTTTGA+CGG | + | tig0041894:7460-7479 | Msa1462050:intron | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | tig0041894:7469-7488 | Msa1462060:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | tig0041894:7507-7526 | Msa1462050:intron | 30.0% | |
| !! | AATCAATGTTGCAGTTTTGT+TGG | - | tig0041894:7946-7965 | Msa1462060:intron | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | - | tig0041894:7947-7966 | Msa1462060:intron | 30.0% |
| GAGATTGAATAGAATAGAGG+TGG | + | tig0041894:6488-6507 | Msa1462050:intron | 35.0% | |
| ATTTACCTGTAAGAAGATCC+TGG | + | tig0041894:6599-6618 | Msa1462050:intron | 35.0% | |
| CTTTGCTGACGAATTTCTTT+AGG | - | tig0041894:7154-7173 | Msa1462060:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | tig0041894:7579-7598 | Msa1462050:intron | 35.0% |
| ATTGTAGGTCCTTGAGTTTA+GGG | + | tig0041894:7635-7654 | Msa1462050:intron | 35.0% | |
| AATTGTAGGTCCTTGAGTTT+AGG | + | tig0041894:7636-7655 | Msa1462050:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | tig0041894:7733-7752 | Msa1462060:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | - | tig0041894:7948-7967 | Msa1462060:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | tig0041894:8033-8052 | Msa1462050:intron | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | tig0041894:8033-8052 | Msa1462060:intron | 35.0% |
| GCACGTTTAGTTATCATGTT+AGG | - | tig0041894:8078-8097 | Msa1462060:intron | 35.0% | |
| !!! | CTCTAGTGATTTTGGGATTT+TGG | - | tig0041894:8121-8140 | Msa1462060:exon | 35.0% |
| GAGATTGAATAGAATAGAGG+TGG | + | tig0041894:6488-6507 | Msa1462050:intron | 35.0% | |
| ATTTACCTGTAAGAAGATCC+TGG | + | tig0041894:6599-6618 | Msa1462050:intron | 35.0% | |
| CTTTGCTGACGAATTTCTTT+AGG | - | tig0041894:7154-7173 | Msa1462060:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | tig0041894:7579-7598 | Msa1462050:intron | 35.0% |
| ATTGTAGGTCCTTGAGTTTA+GGG | + | tig0041894:7635-7654 | Msa1462050:intron | 35.0% | |
| AATTGTAGGTCCTTGAGTTT+AGG | + | tig0041894:7636-7655 | Msa1462050:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | tig0041894:7733-7752 | Msa1462060:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | - | tig0041894:7948-7967 | Msa1462060:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | tig0041894:8033-8052 | Msa1462050:intron | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | tig0041894:8033-8052 | Msa1462060:intron | 35.0% |
| GCACGTTTAGTTATCATGTT+AGG | - | tig0041894:8078-8097 | Msa1462060:intron | 35.0% | |
| !!! | CTCTAGTGATTTTGGGATTT+TGG | - | tig0041894:8121-8140 | Msa1462060:exon | 35.0% |
| TGTAACCATGCTTGTATACC+AGG | - | tig0041894:6578-6597 | Msa1462060:three_prime_UTR | 40.0% | |
| AAGATCCTGGTATACAAGCA+TGG | + | tig0041894:6586-6605 | Msa1462050:intron | 40.0% | |
| GTATACCAGGATCTTCTTAC+AGG | - | tig0041894:6591-6610 | Msa1462060:three_prime_UTR | 40.0% | |
| TGTTGTGTTTGTGTTGTGAC+AGG | - | tig0041894:6955-6974 | Msa1462060:intron | 40.0% | |
| CATTCTCAATTTCCTTGCAG+GGG | + | tig0041894:7204-7223 | Msa1462050:intron | 40.0% | |
| CCATTCTCAATTTCCTTGCA+GGG | + | tig0041894:7205-7224 | Msa1462050:intron | 40.0% | |
| TCCATTCTCAATTTCCTTGC+AGG | + | tig0041894:7206-7225 | Msa1462050:intron | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | tig0041894:7360-7379 | Msa1462060:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | tig0041894:7732-7751 | Msa1462060:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | tig0041894:7734-7753 | Msa1462060:intron | 40.0% |
| CTTCTTAACTTATGCCCCAA+GGG | + | tig0041894:7751-7770 | Msa1462050:intron | 40.0% | |
| TCTTCTTAACTTATGCCCCA+AGG | + | tig0041894:7752-7771 | Msa1462050:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | tig0041894:7890-7909 | Msa1462050:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | tig0041894:7891-7910 | Msa1462050:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | tig0041894:7996-8015 | Msa1462050:intron | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | tig0041894:7993-8012 | Msa1462060:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | tig0041894:7997-8016 | Msa1462060:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | tig0041894:8025-8044 | Msa1462050:intron | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | tig0041894:8052-8071 | Msa1462050:intron | 40.0% | |
| TGTAACCATGCTTGTATACC+AGG | - | tig0041894:6578-6597 | Msa1462060:three_prime_UTR | 40.0% | |
| AAGATCCTGGTATACAAGCA+TGG | + | tig0041894:6586-6605 | Msa1462050:intron | 40.0% | |
| GTATACCAGGATCTTCTTAC+AGG | - | tig0041894:6591-6610 | Msa1462060:three_prime_UTR | 40.0% | |
| TGTTGTGTTTGTGTTGTGAC+AGG | - | tig0041894:6955-6974 | Msa1462060:intron | 40.0% | |
| CATTCTCAATTTCCTTGCAG+GGG | + | tig0041894:7204-7223 | Msa1462050:intron | 40.0% | |
| CCATTCTCAATTTCCTTGCA+GGG | + | tig0041894:7205-7224 | Msa1462050:intron | 40.0% | |
| TCCATTCTCAATTTCCTTGC+AGG | + | tig0041894:7206-7225 | Msa1462050:intron | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | tig0041894:7360-7379 | Msa1462060:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | tig0041894:7732-7751 | Msa1462060:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | tig0041894:7734-7753 | Msa1462060:intron | 40.0% |
| CTTCTTAACTTATGCCCCAA+GGG | + | tig0041894:7751-7770 | Msa1462050:intron | 40.0% | |
| TCTTCTTAACTTATGCCCCA+AGG | + | tig0041894:7752-7771 | Msa1462050:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | tig0041894:7890-7909 | Msa1462050:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | tig0041894:7891-7910 | Msa1462050:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | tig0041894:7996-8015 | Msa1462050:intron | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | tig0041894:7993-8012 | Msa1462060:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | tig0041894:7997-8016 | Msa1462060:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | tig0041894:8025-8044 | Msa1462050:intron | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | tig0041894:8052-8071 | Msa1462050:intron | 40.0% | |
| CCCTGCAAGGAAATTGAGAA+TGG | - | tig0041894:7202-7221 | Msa1462060:CDS | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | - | tig0041894:7219-7238 | Msa1462060:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | - | tig0041894:7381-7400 | Msa1462060:intron | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | - | tig0041894:7446-7465 | Msa1462060:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | tig0041894:7476-7495 | Msa1462060:CDS | 45.0% | |
| GTTCCTTCTCCCTAAACTCA+AGG | - | tig0041894:7623-7642 | Msa1462060:intron | 45.0% | |
| !! | TCTCCTTAACTTGTGCCCTT+AGG | - | tig0041894:7872-7891 | Msa1462060:intron | 45.0% |
| !! | CTCCTTAACTTGTGCCCTTA+GGG | - | tig0041894:7873-7892 | Msa1462060:intron | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | - | tig0041894:8041-8060 | Msa1462060:intron | 45.0% | |
| CCCTGCAAGGAAATTGAGAA+TGG | - | tig0041894:7202-7221 | Msa1462060:CDS | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | - | tig0041894:7219-7238 | Msa1462060:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | - | tig0041894:7381-7400 | Msa1462060:intron | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | - | tig0041894:7446-7465 | Msa1462060:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | tig0041894:7476-7495 | Msa1462060:CDS | 45.0% | |
| GTTCCTTCTCCCTAAACTCA+AGG | - | tig0041894:7623-7642 | Msa1462060:intron | 45.0% | |
| !! | TCTCCTTAACTTGTGCCCTT+AGG | - | tig0041894:7872-7891 | Msa1462060:intron | 45.0% |
| !! | CTCCTTAACTTGTGCCCTTA+GGG | - | tig0041894:7873-7892 | Msa1462060:intron | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | - | tig0041894:8041-8060 | Msa1462060:intron | 45.0% | |
| GGAATGTTGTGGGAAGTGGA+AGG | - | tig0041894:7223-7242 | Msa1462060:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | - | tig0041894:7228-7247 | Msa1462060:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | - | tig0041894:7233-7252 | Msa1462060:CDS | 50.0% | |
| GGTCCTTGAGTTTAGGGAGA+AGG | + | tig0041894:7629-7648 | Msa1462050:intron | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | tig0041894:7878-7897 | Msa1462050:intron | 50.0% |
| GGAATGTTGTGGGAAGTGGA+AGG | - | tig0041894:7223-7242 | Msa1462060:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | - | tig0041894:7228-7247 | Msa1462060:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | - | tig0041894:7233-7252 | Msa1462060:CDS | 50.0% | |
| GGTCCTTGAGTTTAGGGAGA+AGG | + | tig0041894:7629-7648 | Msa1462050:intron | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | tig0041894:7878-7897 | Msa1462050:intron | 50.0% |
| CTCTGACTCATTCCCCTGCA+AGG | - | tig0041894:7189-7208 | Msa1462060:CDS | 55.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | tig0041894:7368-7387 | Msa1462060:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | - | tig0041894:7401-7420 | Msa1462060:intron | 55.0% |
| GGTGCTAACCCTTCTGCAGA+GGG | - | tig0041894:7402-7421 | Msa1462060:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | tig0041894:7967-7986 | Msa1462060:intron | 55.0% |
| CTCTGACTCATTCCCCTGCA+AGG | - | tig0041894:7189-7208 | Msa1462060:CDS | 55.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | tig0041894:7368-7387 | Msa1462060:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | - | tig0041894:7401-7420 | Msa1462060:intron | 55.0% |
| GGTGCTAACCCTTCTGCAGA+GGG | - | tig0041894:7402-7421 | Msa1462060:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | tig0041894:7967-7986 | Msa1462060:intron | 55.0% |
| GCTAACCCTTCTGCAGAGGG+TGG | - | tig0041894:7405-7424 | Msa1462060:intron | 60.0% | |
| CGTCTCCACCCTCTGCAGAA+GGG | + | tig0041894:7413-7432 | Msa1462050:intron | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | + | tig0041894:7414-7433 | Msa1462050:intron | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | - | tig0041894:7413-7432 | Msa1462060:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | - | tig0041894:7420-7439 | Msa1462060:intron | 60.0% | |
| GCTAACCCTTCTGCAGAGGG+TGG | - | tig0041894:7405-7424 | Msa1462060:intron | 60.0% | |
| CGTCTCCACCCTCTGCAGAA+GGG | + | tig0041894:7413-7432 | Msa1462050:intron | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | + | tig0041894:7414-7433 | Msa1462050:intron | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | - | tig0041894:7413-7432 | Msa1462060:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | - | tig0041894:7420-7439 | Msa1462060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041894 | gene | 6450 | 8259 | 6450 | ID=Msa1462060;Name=Msa1462060 |
| tig0041894 | mRNA | 6450 | 8259 | 6450 | ID=Msa1462060-mRNA-1;Parent=Msa1462060;Name=Msa1462060-mRNA-1;_AED=0.29;_eAED=0.29;_QI=135|1|1|1|0.75|0.6|5|159|168 |
| tig0041894 | exon | 6450 | 6551 | 6450 | ID=Msa1462060-mRNA-1:exon:23483;Parent=Msa1462060-mRNA-1 |
| tig0041894 | exon | 6575 | 6749 | 6575 | ID=Msa1462060-mRNA-1:exon:23482;Parent=Msa1462060-mRNA-1 |
| tig0041894 | exon | 7054 | 7340 | 7054 | ID=Msa1462060-mRNA-1:exon:23481;Parent=Msa1462060-mRNA-1 |
| tig0041894 | exon | 7460 | 7533 | 7460 | ID=Msa1462060-mRNA-1:exon:23480;Parent=Msa1462060-mRNA-1 |
| tig0041894 | exon | 8097 | 8259 | 8097 | ID=Msa1462060-mRNA-1:exon:23479;Parent=Msa1462060-mRNA-1 |
| tig0041894 | five_prime_UTR | 8125 | 8259 | 8125 | ID=Msa1462060-mRNA-1:five_prime_utr;Parent=Msa1462060-mRNA-1 |
| tig0041894 | CDS | 8097 | 8124 | 8097 | ID=Msa1462060-mRNA-1:cds;Parent=Msa1462060-mRNA-1 |
| tig0041894 | CDS | 7460 | 7533 | 7460 | ID=Msa1462060-mRNA-1:cds;Parent=Msa1462060-mRNA-1 |
| tig0041894 | CDS | 7054 | 7340 | 7054 | ID=Msa1462060-mRNA-1:cds;Parent=Msa1462060-mRNA-1 |
| tig0041894 | CDS | 6632 | 6749 | 6632 | ID=Msa1462060-mRNA-1:cds;Parent=Msa1462060-mRNA-1 |
| tig0041894 | three_prime_UTR | 6575 | 6631 | 6575 | ID=Msa1462060-mRNA-1:three_prime_utr;Parent=Msa1462060-mRNA-1 |
| tig0041894 | three_prime_UTR | 6450 | 6551 | 6450 | ID=Msa1462060-mRNA-1:three_prime_utr;Parent=Msa1462060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
