Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187220 | XP_003591148.1 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 2.29e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187220 | sp|Q5J907|TCTP_ELAGV | 90.476 | 168 | 16 | 0 | 1 | 168 | 1 | 168 | 1.02e-108 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187220 | G7I8P9 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 1.09e-116 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0187220 | 0.823222 | 1.556069e-53 | -8.615850e-47 |
| Msa0026650 | Msa0187220 | 0.810910 | 9.111156e-51 | -8.615850e-47 |
| Msa0029850 | Msa0187220 | 0.823431 | 1.390298e-53 | -8.615850e-47 |
| Msa0032860 | Msa0187220 | 0.821830 | 3.277002e-53 | -8.615850e-47 |
| Msa0032880 | Msa0187220 | 0.800877 | 1.172923e-48 | -8.615850e-47 |
| Msa0042980 | Msa0187220 | -0.801289 | 9.659004e-49 | -8.615850e-47 |
| Msa0051930 | Msa0187220 | 0.805807 | 1.116631e-49 | -8.615850e-47 |
| Msa0052030 | Msa0187220 | 0.810279 | 1.247316e-50 | -8.615850e-47 |
| Msa0077180 | Msa0187220 | 0.821179 | 4.632763e-53 | -8.615850e-47 |
| Msa0085720 | Msa0187220 | 0.802557 | 5.301262e-49 | -8.615850e-47 |
| Msa0096980 | Msa0187220 | 0.822296 | 2.555269e-53 | -8.615850e-47 |
| Msa0108560 | Msa0187220 | 0.806235 | 9.076498e-50 | -8.615850e-47 |
| Msa0124550 | Msa0187220 | 0.805292 | 1.432441e-49 | -8.615850e-47 |
| Msa0125050 | Msa0187220 | 0.827652 | 1.390006e-54 | -8.615850e-47 |
| Msa0145010 | Msa0187220 | 0.820984 | 5.137354e-53 | -8.615850e-47 |
| Msa0169820 | Msa0187220 | 0.827041 | 1.947143e-54 | -8.615850e-47 |
| Msa0175050 | Msa0187220 | 0.807057 | 6.085947e-50 | -8.615850e-47 |
| Msa0178860 | Msa0187220 | -0.825109 | 5.608437e-54 | -8.615850e-47 |
| Msa0183010 | Msa0187220 | -0.817173 | 3.783796e-52 | -8.615850e-47 |
| Msa0187060 | Msa0187220 | 0.812093 | 5.041974e-51 | -8.615850e-47 |
| Msa0187220 | Msa0187230 | 0.823935 | 1.059586e-53 | -8.615850e-47 |
| Msa0187220 | Msa0230640 | -0.819002 | 1.459963e-52 | -8.615850e-47 |
| Msa0187220 | Msa0279210 | -0.822032 | 2.941936e-53 | -8.615850e-47 |
| Msa0187220 | Msa0307470 | 0.829661 | 4.543960e-55 | -8.615850e-47 |
| Msa0187220 | Msa0318970 | -0.803823 | 2.901032e-49 | -8.615850e-47 |
| Msa0187220 | Msa0347610 | 0.831628 | 1.498397e-55 | -8.615850e-47 |
| Msa0187220 | Msa0388840 | 0.800292 | 1.543425e-48 | -8.615850e-47 |
| Msa0187220 | Msa0389810 | 0.845994 | 2.869999e-59 | -8.615850e-47 |
| Msa0187220 | Msa0394340 | 0.835564 | 1.559071e-56 | -8.615850e-47 |
| Msa0187220 | Msa0433530 | 0.813550 | 2.418751e-51 | -8.615850e-47 |
| Msa0187220 | Msa0436190 | 0.816649 | 4.960525e-52 | -8.615850e-47 |
| Msa0187220 | Msa0468130 | 0.839482 | 1.543119e-57 | -8.615850e-47 |
| Msa0187220 | Msa0471900 | 0.800217 | 1.598429e-48 | -8.615850e-47 |
| Msa0187220 | Msa0472960 | -0.804995 | 1.652576e-49 | -8.615850e-47 |
| Msa0187220 | Msa0477130 | -0.803984 | 2.685208e-49 | -8.615850e-47 |
| Msa0187220 | Msa0477260 | 0.809406 | 1.922660e-50 | -8.615850e-47 |
| Msa0187220 | Msa0482190 | -0.841815 | 3.779262e-58 | -8.615850e-47 |
| Msa0187220 | Msa0485500 | -0.839934 | 1.176993e-57 | -8.615850e-47 |
| Msa0187220 | Msa0489610 | 0.834259 | 3.323756e-56 | -8.615850e-47 |
| Msa0187220 | Msa0524600 | 0.800320 | 1.523465e-48 | -8.615850e-47 |
| Msa0187220 | Msa0526670 | -0.830466 | 2.891062e-55 | -8.615850e-47 |
| Msa0187220 | Msa0526740 | -0.800750 | 1.244794e-48 | -8.615850e-47 |
| Msa0187220 | Msa0534410 | 0.817085 | 3.959000e-52 | -8.615850e-47 |
| Msa0187220 | Msa0570330 | 0.828593 | 8.246511e-55 | -8.615850e-47 |
| Msa0187220 | Msa0577120 | 0.810023 | 1.416319e-50 | -8.615850e-47 |
| Msa0187220 | Msa0588240 | 0.813655 | 2.292783e-51 | -8.615850e-47 |
| Msa0187220 | Msa0590650 | 0.802688 | 4.982751e-49 | -8.615850e-47 |
| Msa0187220 | Msa0615340 | 0.812265 | 4.625777e-51 | -8.615850e-47 |
| Msa0187220 | Msa0628740 | 0.815474 | 9.074564e-52 | -8.615850e-47 |
| Msa0187220 | Msa0630950 | 0.809000 | 2.348782e-50 | -8.615850e-47 |
| Msa0187220 | Msa0631990 | 0.817234 | 3.664524e-52 | -8.615850e-47 |
| Msa0187220 | Msa0649130 | 0.805270 | 1.447626e-49 | -8.615850e-47 |
| Msa0187220 | Msa0666140 | 0.814943 | 1.190970e-51 | -8.615850e-47 |
| Msa0187220 | Msa0670660 | 0.821989 | 3.010073e-53 | -8.615850e-47 |
| Msa0187220 | Msa0673470 | 0.824565 | 7.536502e-54 | -8.615850e-47 |
| Msa0187220 | Msa0692110 | 0.803811 | 2.916836e-49 | -8.615850e-47 |
| Msa0187220 | Msa0700230 | 0.804182 | 2.442047e-49 | -8.615850e-47 |
| Msa0187220 | Msa0704730 | 0.824688 | 7.048153e-54 | -8.615850e-47 |
| Msa0187220 | Msa0723110 | 0.806436 | 8.234486e-50 | -8.615850e-47 |
| Msa0187220 | Msa0724560 | 0.812965 | 3.250253e-51 | -8.615850e-47 |
| Msa0187220 | Msa0732880 | 0.810490 | 1.123490e-50 | -8.615850e-47 |
| Msa0187220 | Msa0747260 | 0.880714 | 4.371014e-70 | -8.615850e-47 |
| Msa0187220 | Msa0793240 | 0.952694 | 1.391888e-110 | -8.615850e-47 |
| Msa0187220 | Msa0801740 | 0.815675 | 8.184880e-52 | -8.615850e-47 |
| Msa0187220 | Msa0843250 | 0.800872 | 1.175218e-48 | -8.615850e-47 |
| Msa0187220 | Msa0848900 | 0.802515 | 5.409406e-49 | -8.615850e-47 |
| Msa0187220 | Msa0982270 | 0.844587 | 6.893937e-59 | -8.615850e-47 |
| Msa0187220 | Msa0994370 | 0.816005 | 6.909474e-52 | -8.615850e-47 |
| Msa0187220 | Msa1174310 | 0.828704 | 7.755045e-55 | -8.615850e-47 |
| Msa0187220 | Msa1183100 | -0.802240 | 6.163557e-49 | -8.615850e-47 |
| Msa0187220 | Msa1224580 | -0.810698 | 1.012673e-50 | -8.615850e-47 |
| Msa0187220 | Msa1235400 | 0.814804 | 1.278084e-51 | -8.615850e-47 |
| Msa0187220 | Msa1258380 | -0.841468 | 4.666042e-58 | -8.615850e-47 |
| Msa0187220 | Msa1270660 | 0.812800 | 3.533728e-51 | -8.615850e-47 |
| Msa0187220 | Msa1270730 | 0.826473 | 2.661395e-54 | -8.615850e-47 |
| Msa0187220 | Msa1276510 | 0.811582 | 6.514776e-51 | -8.615850e-47 |
| Msa0187220 | Msa1307740 | 0.852024 | 6.054749e-61 | -8.615850e-47 |
| Msa0187220 | Msa1314770 | 0.823508 | 1.333838e-53 | -8.615850e-47 |
| Msa0187220 | Msa1335230 | 0.809340 | 1.985613e-50 | -8.615850e-47 |
| Msa0187220 | Msa1348600 | 0.830398 | 3.004176e-55 | -8.615850e-47 |
| Msa0187220 | Msa1357430 | 0.823396 | 1.416999e-53 | -8.615850e-47 |
| Msa0187220 | Msa1364370 | 0.803414 | 3.525455e-49 | -8.615850e-47 |
| Msa0187220 | Msa1444250 | -0.852995 | 3.200216e-61 | -8.615850e-47 |
| Msa0187220 | Msa1462060 | 0.991538 | 3.481721e-188 | -8.615850e-47 |
| Msa0187220 | Msa1462070 | 0.803440 | 3.482505e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187220 | MtrunA17_Chr1g0192171 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 2.11e-120 | 336 |
| Msa0187220 | MtrunA17_Chr1g0192201 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 1.45e-119 | 334 |
| Msa0187220 | MtrunA17_Chr2g0295871 | 85.714 | 168 | 23 | 1 | 1 | 168 | 1 | 167 | 4.80e-102 | 290 |
| Msa0187220 | MtrunA17_Chr6g0479151 | 80.745 | 161 | 30 | 1 | 1 | 161 | 1 | 160 | 1.46e-89 | 258 |
| Msa0187220 | MtrunA17_Chr1g0192161 | 86.047 | 129 | 18 | 0 | 19 | 147 | 9 | 137 | 3.50e-65 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187220 | AT3G16640.1 | 78.571 | 168 | 36 | 0 | 1 | 168 | 1 | 168 | 8.10e-96 | 275 |
| Msa0187220 | AT3G05540.1 | 79.882 | 169 | 32 | 2 | 1 | 168 | 1 | 168 | 5.27e-89 | 257 |
Find 47 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATTGTTGACACTTTC+AGG | 0.110440 | 2_1:-1906923 | Msa0187220:CDS |
| TTATGTTACTCTAGTGATTT+TGG | 0.128436 | 2_1:-1906279 | Msa0187220:intron |
| AATTGTAGGTCCTTGAGTTT+AGG | 0.253357 | 2_1:+1906759 | Msa0187210:intron |
| TCCATTCTCAATTTCCTTGC+AGG | 0.264878 | 2_1:+1907189 | Msa0187210:intron |
| ATTGTAGGTCCTTGAGTTTA+GGG | 0.271566 | 2_1:+1906760 | Msa0187210:intron |
| GTATACCAGGATCTTCTTAC+AGG | 0.300413 | 2_1:-1907803 | Msa0187220:intron |
| TGTTGACACTTTCAGGCTTC+AGG | 0.310211 | 2_1:-1906916 | Msa0187220:CDS |
| GCACGTTTAGTTATCATGTT+AGG | 0.330126 | 2_1:-1906314 | Msa0187220:three_prime_UTR |
| CTACTTTGCCTATGGCTTGA+AGG | 0.378916 | 2_1:-1906351 | Msa0187220:CDS |
| AACAATATCAACCACTTTGA+CGG | 0.381711 | 2_1:+1906935 | Msa0187210:intron |
| GATGAAATACATACAATTGT+AGG | 0.387035 | 2_1:+1906745 | Msa0187210:intron |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | 2_1:+1906888 | Msa0187210:intron |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | 2_1:-1906399 | Msa0187220:CDS |
| GAATGGAATGTTGTGGGAAG+TGG | 0.459626 | 2_1:-1907173 | Msa0187220:CDS |
| CCATTCTCAATTTCCTTGCA+GGG | 0.465811 | 2_1:+1907190 | Msa0187210:intron |
| TAGGCAAAGTAGAGAAAAGT+TGG | 0.474181 | 2_1:+1906362 | Msa0187210:intron |
| TCGTCTCCACCCTCTGCAGA+AGG | 0.482179 | 2_1:+1906981 | Msa0187210:intron |
| TATTTGCAGTGGGTTGTTCA+AGG | 0.483236 | 2_1:-1907032 | Msa0187220:intron |
| AAGAAGAGAGAACTAAAAGA+AGG | 0.488362 | 2_1:+1907863 | Msa0187210:intron |
| CCCTGCAAGGAAATTGAGAA+TGG | 0.490398 | 2_1:-1907190 | Msa0187220:CDS |
| CTTGATTTCCTTCAAGCCAT+AGG | 0.498561 | 2_1:+1906343 | Msa0187210:intron |
| AGTGAGATTGAATAGAATAG+AGG | 0.498595 | 2_1:+1907906 | Msa0187210:intron |
| GGAGCAGTGGATGTGAATAT+TGG | 0.501116 | 2_1:-1907011 | Msa0187220:CDS |
| GGTGCTAACCCTTCTGCAGA+GGG | 0.509467 | 2_1:-1906990 | Msa0187220:CDS |
| TGTAACCATGCTTGTATACC+AGG | 0.532022 | 2_1:-1907816 | Msa0187220:exon |
| CTCTGACTCATTCCCCTGCA+AGG | 0.534349 | 2_1:-1907203 | Msa0187220:CDS |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | 2_1:-1906395 | Msa0187220:CDS |
| GGTCCTTGAGTTTAGGGAGA+AGG | 0.545288 | 2_1:+1906766 | Msa0187210:intron |
| GTTCCTTCTCCCTAAACTCA+AGG | 0.563294 | 2_1:-1906769 | Msa0187220:CDS |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | 2_1:-1906425 | Msa0187220:CDS |
| CATTCTCAATTTCCTTGCAG+GGG | 0.578074 | 2_1:+1907191 | Msa0187210:intron |
| CGTCTCCACCCTCTGCAGAA+GGG | 0.579433 | 2_1:+1906982 | Msa0187210:intron |
| ATTTACCTGTAAGAAGATCC+TGG | 0.582754 | 2_1:+1907798 | Msa0187210:intron |
| GTTGTGGGAAGTGGAAGGAA+AGG | 0.585239 | 2_1:-1907164 | Msa0187220:intron |
| GAGATTGAATAGAATAGAGG+TGG | 0.587539 | 2_1:+1907909 | Msa0187210:intron |
| AATTGAGAATGGAATGTTGT+GGG | 0.593952 | 2_1:-1907179 | Msa0187220:CDS |
| TTCTGCAGAGGGTGGAGACG+AGG | 0.598044 | 2_1:-1906979 | Msa0187220:CDS |
| GCTAACCCTTCTGCAGAGGG+TGG | 0.604009 | 2_1:-1906987 | Msa0187220:CDS |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | 2_1:+1906370 | Msa0187210:intron |
| GAGGGTGGAGACGAGGATGA+CGG | 0.612656 | 2_1:-1906972 | Msa0187220:CDS |
| TGGTGCTAACCCTTCTGCAG+AGG | 0.618744 | 2_1:-1906991 | Msa0187220:CDS |
| AAGATCCTGGTATACAAGCA+TGG | 0.621063 | 2_1:+1907811 | Msa0187210:intron |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | 2_1:+1906399 | Msa0187210:intron |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | 2_1:-1907024 | Msa0187220:CDS |
| GGAATGTTGTGGGAAGTGGA+AGG | 0.687071 | 2_1:-1907169 | Msa0187220:CDS |
| TGATGATCAAGCCGTCAAAG+TGG | 0.714042 | 2_1:-1906946 | Msa0187220:CDS |
| AAATTGAGAATGGAATGTTG+TGG | 0.718062 | 2_1:-1907180 | Msa0187220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAGATTATTTATTTAT+GGG | + | chr2_1:1907621-1907640 | Msa0187210:intron | 10.0% |
| !! | AGTAAAGATTATTTATTTAT+GGG | + | chr2_1:1907621-1907640 | Msa0187210:intron | 10.0% |
| !!! | AATTATTTAAAACTAAAGTG+AGG | + | chr2_1:1906478-1906497 | Msa0187210:intron | 15.0% |
| !!! | ATATTAGAGATTATTGTTTT+TGG | - | chr2_1:1906805-1906824 | Msa0187220:CDS | 15.0% |
| !! | CTAATTTATGAACATATATT+TGG | + | chr2_1:1907019-1907038 | Msa0187210:intron | 15.0% |
| !!! | TTATCTTTCATCTTTTTATT+TGG | - | chr2_1:1907378-1907397 | Msa0187220:intron | 15.0% |
| !! | CAGTAAAGATTATTTATTTA+TGG | + | chr2_1:1907622-1907641 | Msa0187210:intron | 15.0% |
| !!! | AATTATTTAAAACTAAAGTG+AGG | + | chr2_1:1906478-1906497 | Msa0187210:intron | 15.0% |
| !!! | ATATTAGAGATTATTGTTTT+TGG | - | chr2_1:1906805-1906824 | Msa0187220:CDS | 15.0% |
| !! | CTAATTTATGAACATATATT+TGG | + | chr2_1:1907019-1907038 | Msa0187210:intron | 15.0% |
| !!! | TTATCTTTCATCTTTTTATT+TGG | - | chr2_1:1907378-1907397 | Msa0187220:intron | 15.0% |
| !! | CAGTAAAGATTATTTATTTA+TGG | + | chr2_1:1907622-1907641 | Msa0187210:intron | 15.0% |
| !!! | TAAAACTTCTCTGTTTTTAT+GGG | + | chr2_1:1906576-1906595 | Msa0187210:intron | 20.0% |
| !!! | TTAAAACTTCTCTGTTTTTA+TGG | + | chr2_1:1906577-1906596 | Msa0187210:intron | 20.0% |
| !!! | ATAAAAACAGAGAAGTTTTA+AGG | - | chr2_1:1906576-1906595 | Msa0187220:intron | 20.0% |
| !! | TAAGAGATAATCATGTTTAA+GGG | + | chr2_1:1906734-1906753 | Msa0187210:intron | 20.0% |
| !! | TTAAGAGATAATCATGTTTA+AGG | + | chr2_1:1906735-1906754 | Msa0187210:intron | 20.0% |
| !! | CTTAATCTAATACTTGATTA+TGG | - | chr2_1:1906750-1906769 | Msa0187220:intron | 20.0% |
| !! | TAGAAAGAAACATTATAGAA+AGG | + | chr2_1:1906975-1906994 | Msa0187210:intron | 20.0% |
| !!! | TCTTTTTTGTGGATAAATAA+AGG | - | chr2_1:1907416-1907435 | Msa0187220:intron | 20.0% |
| !!! | CTTTTTTGTGGATAAATAAA+GGG | - | chr2_1:1907417-1907436 | Msa0187220:intron | 20.0% |
| !!! | TAAAACTTCTCTGTTTTTAT+GGG | + | chr2_1:1906576-1906595 | Msa0187210:intron | 20.0% |
| !!! | TTAAAACTTCTCTGTTTTTA+TGG | + | chr2_1:1906577-1906596 | Msa0187210:intron | 20.0% |
| !!! | ATAAAAACAGAGAAGTTTTA+AGG | - | chr2_1:1906576-1906595 | Msa0187220:intron | 20.0% |
| !! | TAAGAGATAATCATGTTTAA+GGG | + | chr2_1:1906734-1906753 | Msa0187210:intron | 20.0% |
| !! | TTAAGAGATAATCATGTTTA+AGG | + | chr2_1:1906735-1906754 | Msa0187210:intron | 20.0% |
| !! | CTTAATCTAATACTTGATTA+TGG | - | chr2_1:1906750-1906769 | Msa0187220:intron | 20.0% |
| !! | TAGAAAGAAACATTATAGAA+AGG | + | chr2_1:1906975-1906994 | Msa0187210:intron | 20.0% |
| !!! | TCTTTTTTGTGGATAAATAA+AGG | - | chr2_1:1907416-1907435 | Msa0187220:intron | 20.0% |
| !!! | CTTTTTTGTGGATAAATAAA+GGG | - | chr2_1:1907417-1907436 | Msa0187220:intron | 20.0% |
| ! | AAAAATCTCAAAGATGATGA+TGG | + | chr2_1:1906327-1906346 | Msa0187210:intron | 25.0% |
| !! | TCGTTTGTATTTCTTTTCAT+AGG | - | chr2_1:1906358-1906377 | Msa0187220:CDS | 25.0% |
| ! | GAAATTCATTCACTAAATAC+AGG | + | chr2_1:1906419-1906438 | Msa0187210:intron | 25.0% |
| ! | TTGTGACAGGATTAAATTTA+TGG | - | chr2_1:1906675-1906694 | Msa0187220:intron | 25.0% |
| ! | ATTACACAACAATCAACTTT+AGG | + | chr2_1:1907042-1907061 | Msa0187210:intron | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | + | chr2_1:1907357-1907376 | Msa0187210:intron | 25.0% |
| !!! | ATTAAGTTCTCTCTTTTTTG+TGG | - | chr2_1:1907405-1907424 | Msa0187220:intron | 25.0% |
| !! | TTATGTTACTCTAGTGATTT+TGG | - | chr2_1:1907820-1907839 | Msa0187220:exon | 25.0% |
| !! | TATGTTACTCTAGTGATTTT+GGG | - | chr2_1:1907821-1907840 | Msa0187220:exon | 25.0% |
| !! | GAGTTTCGTATTTTCTAATT+AGG | - | chr2_1:1907876-1907895 | Msa0187220:five_prime_UTR | 25.0% |
| ! | AAAAATCTCAAAGATGATGA+TGG | + | chr2_1:1906327-1906346 | Msa0187210:intron | 25.0% |
| !! | TCGTTTGTATTTCTTTTCAT+AGG | - | chr2_1:1906358-1906377 | Msa0187220:CDS | 25.0% |
| ! | GAAATTCATTCACTAAATAC+AGG | + | chr2_1:1906419-1906438 | Msa0187210:intron | 25.0% |
| ! | TTGTGACAGGATTAAATTTA+TGG | - | chr2_1:1906675-1906694 | Msa0187220:intron | 25.0% |
| ! | ATTACACAACAATCAACTTT+AGG | + | chr2_1:1907042-1907061 | Msa0187210:intron | 25.0% |
| ! | GATGAAATACATACAATTGT+AGG | + | chr2_1:1907357-1907376 | Msa0187210:intron | 25.0% |
| !!! | ATTAAGTTCTCTCTTTTTTG+TGG | - | chr2_1:1907405-1907424 | Msa0187220:intron | 25.0% |
| !! | TTATGTTACTCTAGTGATTT+TGG | - | chr2_1:1907820-1907839 | Msa0187220:exon | 25.0% |
| !! | TATGTTACTCTAGTGATTTT+GGG | - | chr2_1:1907821-1907840 | Msa0187220:exon | 25.0% |
| !! | GAGTTTCGTATTTTCTAATT+AGG | - | chr2_1:1907876-1907895 | Msa0187220:five_prime_UTR | 25.0% |
| AGTGAGATTGAATAGAATAG+AGG | + | chr2_1:1906196-1906215 | Msa0187210:intron | 30.0% | |
| AAGAAGAGAGAACTAAAAGA+AGG | + | chr2_1:1906239-1906258 | Msa0187210:intron | 30.0% | |
| ! | TTATGTTGTTTGTGTTCTGT+TGG | - | chr2_1:1906620-1906639 | Msa0187220:intron | 30.0% |
| !!! | TTATTGTTTTTGGTTGCTGA+TGG | - | chr2_1:1906815-1906834 | Msa0187220:CDS | 30.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | chr2_1:1906919-1906938 | Msa0187220:CDS | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | chr2_1:1906920-1906939 | Msa0187220:CDS | 30.0% | |
| TGTAATGTGATTATTTGCAG+TGG | - | chr2_1:1907056-1907075 | Msa0187220:intron | 30.0% | |
| GTAATGTGATTATTTGCAGT+GGG | - | chr2_1:1907057-1907076 | Msa0187220:intron | 30.0% | |
| AACAATATCAACCACTTTGA+CGG | + | chr2_1:1907167-1907186 | Msa0187210:intron | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | chr2_1:1907176-1907195 | Msa0187220:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | chr2_1:1907214-1907233 | Msa0187210:intron | 30.0% | |
| !! | AATCAATGTTGCAGTTTTGT+TGG | - | chr2_1:1907653-1907672 | Msa0187220:intron | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | - | chr2_1:1907654-1907673 | Msa0187220:intron | 30.0% |
| AGTGAGATTGAATAGAATAG+AGG | + | chr2_1:1906196-1906215 | Msa0187210:intron | 30.0% | |
| AAGAAGAGAGAACTAAAAGA+AGG | + | chr2_1:1906239-1906258 | Msa0187210:intron | 30.0% | |
| ! | TTATGTTGTTTGTGTTCTGT+TGG | - | chr2_1:1906620-1906639 | Msa0187220:intron | 30.0% |
| !!! | TTATTGTTTTTGGTTGCTGA+TGG | - | chr2_1:1906815-1906834 | Msa0187220:CDS | 30.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | chr2_1:1906919-1906938 | Msa0187220:CDS | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | chr2_1:1906920-1906939 | Msa0187220:CDS | 30.0% | |
| TGTAATGTGATTATTTGCAG+TGG | - | chr2_1:1907056-1907075 | Msa0187220:intron | 30.0% | |
| GTAATGTGATTATTTGCAGT+GGG | - | chr2_1:1907057-1907076 | Msa0187220:intron | 30.0% | |
| AACAATATCAACCACTTTGA+CGG | + | chr2_1:1907167-1907186 | Msa0187210:intron | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | - | chr2_1:1907176-1907195 | Msa0187220:CDS | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | + | chr2_1:1907214-1907233 | Msa0187210:intron | 30.0% | |
| !! | AATCAATGTTGCAGTTTTGT+TGG | - | chr2_1:1907653-1907672 | Msa0187220:intron | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | - | chr2_1:1907654-1907673 | Msa0187220:intron | 30.0% |
| GAGATTGAATAGAATAGAGG+TGG | + | chr2_1:1906193-1906212 | Msa0187210:intron | 35.0% | |
| ATTTACCTGTAAGAAGATCC+TGG | + | chr2_1:1906304-1906323 | Msa0187210:intron | 35.0% | |
| CTTTGCTGACGAATTTCTTT+AGG | - | chr2_1:1906861-1906880 | Msa0187220:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | chr2_1:1907286-1907305 | Msa0187210:intron | 35.0% |
| ATTGTAGGTCCTTGAGTTTA+GGG | + | chr2_1:1907342-1907361 | Msa0187210:intron | 35.0% | |
| AATTGTAGGTCCTTGAGTTT+AGG | + | chr2_1:1907343-1907362 | Msa0187210:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr2_1:1907440-1907459 | Msa0187220:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | - | chr2_1:1907655-1907674 | Msa0187220:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | chr2_1:1907740-1907759 | Msa0187210:intron | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | chr2_1:1907740-1907759 | Msa0187220:intron | 35.0% |
| GCACGTTTAGTTATCATGTT+AGG | - | chr2_1:1907785-1907804 | Msa0187220:intron | 35.0% | |
| !!! | CTCTAGTGATTTTGGGATTT+TGG | - | chr2_1:1907828-1907847 | Msa0187220:exon | 35.0% |
| GAGATTGAATAGAATAGAGG+TGG | + | chr2_1:1906193-1906212 | Msa0187210:intron | 35.0% | |
| ATTTACCTGTAAGAAGATCC+TGG | + | chr2_1:1906304-1906323 | Msa0187210:intron | 35.0% | |
| CTTTGCTGACGAATTTCTTT+AGG | - | chr2_1:1906861-1906880 | Msa0187220:CDS | 35.0% | |
| !! | TTGAACAACTCTTGCTTTTC+TGG | + | chr2_1:1907286-1907305 | Msa0187210:intron | 35.0% |
| ATTGTAGGTCCTTGAGTTTA+GGG | + | chr2_1:1907342-1907361 | Msa0187210:intron | 35.0% | |
| AATTGTAGGTCCTTGAGTTT+AGG | + | chr2_1:1907343-1907362 | Msa0187210:intron | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr2_1:1907440-1907459 | Msa0187220:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | - | chr2_1:1907655-1907674 | Msa0187220:intron | 35.0% |
| TAGGCAAAGTAGAGAAAAGT+TGG | + | chr2_1:1907740-1907759 | Msa0187210:intron | 35.0% | |
| ! | ACTTTTCTCTACTTTGCCTA+TGG | - | chr2_1:1907740-1907759 | Msa0187220:intron | 35.0% |
| GCACGTTTAGTTATCATGTT+AGG | - | chr2_1:1907785-1907804 | Msa0187220:intron | 35.0% | |
| !!! | CTCTAGTGATTTTGGGATTT+TGG | - | chr2_1:1907828-1907847 | Msa0187220:exon | 35.0% |
| TGTAACCATGCTTGTATACC+AGG | - | chr2_1:1906283-1906302 | Msa0187220:three_prime_UTR | 40.0% | |
| AAGATCCTGGTATACAAGCA+TGG | + | chr2_1:1906291-1906310 | Msa0187210:intron | 40.0% | |
| GTATACCAGGATCTTCTTAC+AGG | - | chr2_1:1906296-1906315 | Msa0187220:three_prime_UTR | 40.0% | |
| TGTTGTGTTTGTGTTGTGAC+AGG | - | chr2_1:1906662-1906681 | Msa0187220:intron | 40.0% | |
| CATTCTCAATTTCCTTGCAG+GGG | + | chr2_1:1906911-1906930 | Msa0187210:intron | 40.0% | |
| CCATTCTCAATTTCCTTGCA+GGG | + | chr2_1:1906912-1906931 | Msa0187210:intron | 40.0% | |
| TCCATTCTCAATTTCCTTGC+AGG | + | chr2_1:1906913-1906932 | Msa0187210:intron | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | chr2_1:1907067-1907086 | Msa0187220:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr2_1:1907439-1907458 | Msa0187220:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr2_1:1907441-1907460 | Msa0187220:intron | 40.0% |
| CTTCTTAACTTATGCCCCAA+GGG | + | chr2_1:1907458-1907477 | Msa0187210:intron | 40.0% | |
| TCTTCTTAACTTATGCCCCA+AGG | + | chr2_1:1907459-1907478 | Msa0187210:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr2_1:1907597-1907616 | Msa0187210:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr2_1:1907598-1907617 | Msa0187210:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | chr2_1:1907703-1907722 | Msa0187210:intron | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | chr2_1:1907700-1907719 | Msa0187220:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | chr2_1:1907704-1907723 | Msa0187220:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | chr2_1:1907732-1907751 | Msa0187210:intron | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | chr2_1:1907759-1907778 | Msa0187210:intron | 40.0% | |
| TGTAACCATGCTTGTATACC+AGG | - | chr2_1:1906283-1906302 | Msa0187220:three_prime_UTR | 40.0% | |
| AAGATCCTGGTATACAAGCA+TGG | + | chr2_1:1906291-1906310 | Msa0187210:intron | 40.0% | |
| GTATACCAGGATCTTCTTAC+AGG | - | chr2_1:1906296-1906315 | Msa0187220:three_prime_UTR | 40.0% | |
| TGTTGTGTTTGTGTTGTGAC+AGG | - | chr2_1:1906662-1906681 | Msa0187220:intron | 40.0% | |
| CATTCTCAATTTCCTTGCAG+GGG | + | chr2_1:1906911-1906930 | Msa0187210:intron | 40.0% | |
| CCATTCTCAATTTCCTTGCA+GGG | + | chr2_1:1906912-1906931 | Msa0187210:intron | 40.0% | |
| TCCATTCTCAATTTCCTTGC+AGG | + | chr2_1:1906913-1906932 | Msa0187210:intron | 40.0% | |
| !! | TATTTGCAGTGGGTTGTTCA+AGG | - | chr2_1:1907067-1907086 | Msa0187220:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr2_1:1907439-1907458 | Msa0187220:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr2_1:1907441-1907460 | Msa0187220:intron | 40.0% |
| CTTCTTAACTTATGCCCCAA+GGG | + | chr2_1:1907458-1907477 | Msa0187210:intron | 40.0% | |
| TCTTCTTAACTTATGCCCCA+AGG | + | chr2_1:1907459-1907478 | Msa0187210:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr2_1:1907597-1907616 | Msa0187210:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr2_1:1907598-1907617 | Msa0187210:intron | 40.0% |
| CCTTGTAGTAAGCAAACACA+AGG | + | chr2_1:1907703-1907722 | Msa0187210:intron | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | - | chr2_1:1907700-1907719 | Msa0187220:intron | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | - | chr2_1:1907704-1907723 | Msa0187220:intron | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | + | chr2_1:1907732-1907751 | Msa0187210:intron | 40.0% | |
| CTTGATTTCCTTCAAGCCAT+AGG | + | chr2_1:1907759-1907778 | Msa0187210:intron | 40.0% | |
| CCCTGCAAGGAAATTGAGAA+TGG | - | chr2_1:1906909-1906928 | Msa0187220:CDS | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | - | chr2_1:1906926-1906945 | Msa0187220:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | - | chr2_1:1907088-1907107 | Msa0187220:intron | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | - | chr2_1:1907153-1907172 | Msa0187220:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | chr2_1:1907183-1907202 | Msa0187220:CDS | 45.0% | |
| GTTCCTTCTCCCTAAACTCA+AGG | - | chr2_1:1907330-1907349 | Msa0187220:intron | 45.0% | |
| !! | TCTCCTTAACTTGTGCCCTT+AGG | - | chr2_1:1907579-1907598 | Msa0187220:intron | 45.0% |
| !! | CTCCTTAACTTGTGCCCTTA+GGG | - | chr2_1:1907580-1907599 | Msa0187220:intron | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | - | chr2_1:1907748-1907767 | Msa0187220:intron | 45.0% | |
| CCCTGCAAGGAAATTGAGAA+TGG | - | chr2_1:1906909-1906928 | Msa0187220:CDS | 45.0% | |
| GAATGGAATGTTGTGGGAAG+TGG | - | chr2_1:1906926-1906945 | Msa0187220:CDS | 45.0% | |
| GGAGCAGTGGATGTGAATAT+TGG | - | chr2_1:1907088-1907107 | Msa0187220:intron | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | - | chr2_1:1907153-1907172 | Msa0187220:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | - | chr2_1:1907183-1907202 | Msa0187220:CDS | 45.0% | |
| GTTCCTTCTCCCTAAACTCA+AGG | - | chr2_1:1907330-1907349 | Msa0187220:intron | 45.0% | |
| !! | TCTCCTTAACTTGTGCCCTT+AGG | - | chr2_1:1907579-1907598 | Msa0187220:intron | 45.0% |
| !! | CTCCTTAACTTGTGCCCTTA+GGG | - | chr2_1:1907580-1907599 | Msa0187220:intron | 45.0% |
| CTACTTTGCCTATGGCTTGA+AGG | - | chr2_1:1907748-1907767 | Msa0187220:intron | 45.0% | |
| GGAATGTTGTGGGAAGTGGA+AGG | - | chr2_1:1906930-1906949 | Msa0187220:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | - | chr2_1:1906935-1906954 | Msa0187220:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | - | chr2_1:1906940-1906959 | Msa0187220:CDS | 50.0% | |
| GGTCCTTGAGTTTAGGGAGA+AGG | + | chr2_1:1907336-1907355 | Msa0187210:intron | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | chr2_1:1907585-1907604 | Msa0187210:intron | 50.0% |
| GGAATGTTGTGGGAAGTGGA+AGG | - | chr2_1:1906930-1906949 | Msa0187220:CDS | 50.0% | |
| GTTGTGGGAAGTGGAAGGAA+AGG | - | chr2_1:1906935-1906954 | Msa0187220:CDS | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+AGG | - | chr2_1:1906940-1906959 | Msa0187220:CDS | 50.0% | |
| GGTCCTTGAGTTTAGGGAGA+AGG | + | chr2_1:1907336-1907355 | Msa0187210:intron | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | chr2_1:1907585-1907604 | Msa0187210:intron | 50.0% |
| CTCTGACTCATTCCCCTGCA+AGG | - | chr2_1:1906896-1906915 | Msa0187220:CDS | 55.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | chr2_1:1907075-1907094 | Msa0187220:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | - | chr2_1:1907108-1907127 | Msa0187220:intron | 55.0% |
| GGTGCTAACCCTTCTGCAGA+GGG | - | chr2_1:1907109-1907128 | Msa0187220:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | chr2_1:1907674-1907693 | Msa0187220:intron | 55.0% |
| CTCTGACTCATTCCCCTGCA+AGG | - | chr2_1:1906896-1906915 | Msa0187220:CDS | 55.0% | |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | - | chr2_1:1907075-1907094 | Msa0187220:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | - | chr2_1:1907108-1907127 | Msa0187220:intron | 55.0% |
| GGTGCTAACCCTTCTGCAGA+GGG | - | chr2_1:1907109-1907128 | Msa0187220:intron | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | - | chr2_1:1907674-1907693 | Msa0187220:intron | 55.0% |
| GCTAACCCTTCTGCAGAGGG+TGG | - | chr2_1:1907112-1907131 | Msa0187220:intron | 60.0% | |
| CGTCTCCACCCTCTGCAGAA+GGG | + | chr2_1:1907120-1907139 | Msa0187210:intron | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | + | chr2_1:1907121-1907140 | Msa0187210:intron | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | - | chr2_1:1907120-1907139 | Msa0187220:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | - | chr2_1:1907127-1907146 | Msa0187220:intron | 60.0% | |
| GCTAACCCTTCTGCAGAGGG+TGG | - | chr2_1:1907112-1907131 | Msa0187220:intron | 60.0% | |
| CGTCTCCACCCTCTGCAGAA+GGG | + | chr2_1:1907120-1907139 | Msa0187210:intron | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | + | chr2_1:1907121-1907140 | Msa0187210:intron | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | - | chr2_1:1907120-1907139 | Msa0187220:intron | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | - | chr2_1:1907127-1907146 | Msa0187220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 1906155 | 1907966 | 1906155 | ID=Msa0187220;Name=Msa0187220 |
| chr2_1 | mRNA | 1906155 | 1907966 | 1906155 | ID=Msa0187220-mRNA-1;Parent=Msa0187220;Name=Msa0187220-mRNA-1;_AED=0.29;_eAED=0.29;_QI=135|1|1|1|0.75|0.6|5|159|168 |
| chr2_1 | exon | 1906155 | 1906256 | 1906155 | ID=Msa0187220-mRNA-1:exon:917;Parent=Msa0187220-mRNA-1 |
| chr2_1 | exon | 1906280 | 1906454 | 1906280 | ID=Msa0187220-mRNA-1:exon:916;Parent=Msa0187220-mRNA-1 |
| chr2_1 | exon | 1906759 | 1907045 | 1906759 | ID=Msa0187220-mRNA-1:exon:915;Parent=Msa0187220-mRNA-1 |
| chr2_1 | exon | 1907165 | 1907238 | 1907165 | ID=Msa0187220-mRNA-1:exon:914;Parent=Msa0187220-mRNA-1 |
| chr2_1 | exon | 1907804 | 1907966 | 1907804 | ID=Msa0187220-mRNA-1:exon:913;Parent=Msa0187220-mRNA-1 |
| chr2_1 | five_prime_UTR | 1907832 | 1907966 | 1907832 | ID=Msa0187220-mRNA-1:five_prime_utr;Parent=Msa0187220-mRNA-1 |
| chr2_1 | CDS | 1907804 | 1907831 | 1907804 | ID=Msa0187220-mRNA-1:cds;Parent=Msa0187220-mRNA-1 |
| chr2_1 | CDS | 1907165 | 1907238 | 1907165 | ID=Msa0187220-mRNA-1:cds;Parent=Msa0187220-mRNA-1 |
| chr2_1 | CDS | 1906759 | 1907045 | 1906759 | ID=Msa0187220-mRNA-1:cds;Parent=Msa0187220-mRNA-1 |
| chr2_1 | CDS | 1906337 | 1906454 | 1906337 | ID=Msa0187220-mRNA-1:cds;Parent=Msa0187220-mRNA-1 |
| chr2_1 | three_prime_UTR | 1906280 | 1906336 | 1906280 | ID=Msa0187220-mRNA-1:three_prime_utr;Parent=Msa0187220-mRNA-1 |
| chr2_1 | three_prime_UTR | 1906155 | 1906256 | 1906155 | ID=Msa0187220-mRNA-1:three_prime_utr;Parent=Msa0187220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
