Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033460 | sp|Q9C895|BRE1B_ARATH | 47.826 | 368 | 167 | 4 | 1 | 346 | 1 | 365 | 4.27e-97 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033460 | Msa0078060 | 0.929548 | 5.938117e-93 | -8.615850e-47 |
| Msa0033460 | Msa0092440 | 0.824139 | 9.491838e-54 | -8.615850e-47 |
| Msa0033460 | Msa0122580 | 0.804926 | 1.708725e-49 | -8.615850e-47 |
| Msa0033460 | Msa0126230 | 0.823598 | 1.270753e-53 | -8.615850e-47 |
| Msa0033460 | Msa0128180 | 0.813710 | 2.229905e-51 | -8.615850e-47 |
| Msa0033460 | Msa0143850 | 0.804243 | 2.371413e-49 | -8.615850e-47 |
| Msa0033460 | Msa0167850 | 0.802049 | 6.746188e-49 | -8.615850e-47 |
| Msa0033460 | Msa0174360 | 0.800692 | 1.279330e-48 | -8.615850e-47 |
| Msa0033460 | Msa0234440 | 0.800932 | 1.142885e-48 | -8.615850e-47 |
| Msa0033460 | Msa0237310 | 0.809512 | 1.823817e-50 | -8.615850e-47 |
| Msa0033460 | Msa0249100 | 0.805867 | 1.084781e-49 | -8.615850e-47 |
| Msa0033460 | Msa0269520 | 0.829286 | 5.604466e-55 | -8.615850e-47 |
| Msa0033460 | Msa0274730 | 0.804100 | 2.540320e-49 | -8.615850e-47 |
| Msa0033460 | Msa0302890 | 0.800720 | 1.262783e-48 | -8.615850e-47 |
| Msa0033460 | Msa0315530 | 0.800829 | 1.199404e-48 | -8.615850e-47 |
| Msa0033460 | Msa0317740 | 0.805843 | 1.097572e-49 | -8.615850e-47 |
| Msa0033460 | Msa0318880 | 0.812625 | 3.858300e-51 | -8.615850e-47 |
| Msa0033460 | Msa0320800 | 0.803009 | 4.276371e-49 | -8.615850e-47 |
| Msa0033460 | Msa0417650 | 0.803729 | 3.034209e-49 | -8.615850e-47 |
| Msa0033460 | Msa0417730 | 0.816619 | 5.037381e-52 | -8.615850e-47 |
| Msa0033460 | Msa0423840 | 0.821602 | 3.700371e-53 | -8.615850e-47 |
| Msa0033460 | Msa0439970 | 0.816453 | 5.488333e-52 | -8.615850e-47 |
| Msa0033460 | Msa0663250 | 0.843028 | 1.802456e-58 | -8.615850e-47 |
| Msa0033460 | Msa0749400 | 0.802944 | 4.411740e-49 | -8.615850e-47 |
| Msa0033460 | Msa0780280 | 0.821756 | 3.409719e-53 | -8.615850e-47 |
| Msa0033460 | Msa0821800 | 0.805353 | 1.390731e-49 | -8.615850e-47 |
| Msa0033460 | Msa0861830 | 0.807319 | 5.356753e-50 | -8.615850e-47 |
| Msa0033460 | Msa1010070 | 0.819320 | 1.235570e-52 | -8.615850e-47 |
| Msa0033460 | Msa1056460 | 0.806593 | 7.629178e-50 | -8.615850e-47 |
| Msa0033460 | Msa1333730 | 0.835159 | 1.973107e-56 | -8.615850e-47 |
| Msa0033460 | Msa1338250 | 0.807880 | 4.071878e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033460 | MtrunA17_Chr1g0182391 | 97.110 | 346 | 10 | 0 | 1 | 346 | 1 | 346 | 0.0 | 691 |
| Msa0033460 | MtrunA17_Chr5g0438781 | 88.439 | 346 | 40 | 0 | 1 | 346 | 1 | 346 | 0.0 | 592 |
| Msa0033460 | MtrunA17_Chr8g0365251 | 82.143 | 84 | 15 | 0 | 252 | 335 | 2 | 85 | 1.14e-39 | 135 |
| Msa0033460 | MtrunA17_Chr5g0427091 | 83.562 | 73 | 12 | 0 | 275 | 347 | 1 | 73 | 1.03e-33 | 122 |
| Msa0033460 | MtrunA17_Chr7g0232251 | 27.381 | 336 | 224 | 6 | 18 | 346 | 19 | 341 | 2.81e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033460 | AT1G55250.5 | 50.411 | 365 | 175 | 3 | 1 | 360 | 1 | 364 | 1.09e-106 | 333 |
| Msa0033460 | AT1G55250.3 | 50.411 | 365 | 175 | 3 | 1 | 360 | 1 | 364 | 1.14e-106 | 333 |
| Msa0033460 | AT1G55250.1 | 47.826 | 368 | 167 | 4 | 1 | 346 | 1 | 365 | 4.34e-98 | 310 |
| Msa0033460 | AT2G44950.1 | 24.069 | 349 | 243 | 9 | 8 | 346 | 6 | 342 | 7.00e-17 | 82.8 |
| Msa0033460 | AT2G44950.2 | 24.069 | 349 | 243 | 8 | 8 | 346 | 6 | 342 | 7.69e-17 | 82.4 |
Find 83 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTCAATAGAATCTTTC+TGG | 0.156125 | 1_1:+60994964 | None:intergenic |
| GCTGAACAAGCTGCTGATTC+TGG | 0.251145 | 1_1:+60995433 | None:intergenic |
| ATTGACAAACCTGAAGTTCT+TGG | 0.253258 | 1_1:+60991884 | None:intergenic |
| TTTCTAGTTGGTTGATGATA+TGG | 0.255629 | 1_1:-60995221 | Msa0033460:intron |
| CTTTGCGTCGGTTATCTACT+AGG | 0.292056 | 1_1:-60994899 | Msa0033460:CDS |
| GGAGAATGGTTGGTTGAATT+TGG | 0.292304 | 1_1:+60996311 | None:intergenic |
| TCTGACATTAAACGCCTTAC+AGG | 0.299793 | 1_1:-60994474 | Msa0033460:intron |
| CAAAGATTCTTTGGAAACTT+TGG | 0.300310 | 1_1:-60995170 | Msa0033460:CDS |
| GATTGATGATATGACGAAAA+AGG | 0.308345 | 1_1:-60994598 | Msa0033460:CDS |
| TTCTGCGAATTTGAAGAAAA+AGG | 0.321727 | 1_1:+60996414 | None:intergenic |
| GCCCTGTCTGCAGGCTTCTC+AGG | 0.332687 | 1_1:+60992106 | None:intergenic |
| AACGCAGAAACACGCTTTAC+AGG | 0.334237 | 1_1:-60995403 | Msa0033460:CDS |
| TGGGAGAGGCAAAGATTCTT+TGG | 0.337753 | 1_1:-60995179 | Msa0033460:CDS |
| TATCATCAATCTTAGACATT+TGG | 0.341485 | 1_1:+60994610 | None:intergenic |
| AAAGAAATTCCAAGAACTTC+AGG | 0.368208 | 1_1:-60991893 | Msa0033460:CDS |
| GTTGATGATATGGCTCTTCT+CGG | 0.369040 | 1_1:-60995211 | Msa0033460:CDS |
| CTTCTTCCTAATGCTTCGTT+TGG | 0.373933 | 1_1:-60996439 | Msa0033460:five_prime_UTR |
| AGATGAGGCTTCTTGTTGTT+GGG | 0.375831 | 1_1:+60996362 | None:intergenic |
| TTCCCTTCCTTCGTGTCATC+CGG | 0.390660 | 1_1:-60995012 | Msa0033460:CDS |
| AAACCCATGGCCCTGTCTGC+AGG | 0.401224 | 1_1:+60992097 | None:intergenic |
| GCTCTTCTCGGGGTACAAGC+TGG | 0.401727 | 1_1:-60995199 | Msa0033460:CDS |
| ATCCAGAAAGATTCTATTGA+GGG | 0.419466 | 1_1:-60994966 | Msa0033460:CDS |
| TTGATGATATGGCTCTTCTC+GGG | 0.429244 | 1_1:-60995210 | Msa0033460:CDS |
| AAGATGAGGCTTCTTGTTGT+TGG | 0.429347 | 1_1:+60996361 | None:intergenic |
| AAGGAACCAAACGAAGCATT+AGG | 0.432172 | 1_1:+60996433 | None:intergenic |
| GGTGAAACGCGGGAAGAAAC+AGG | 0.432248 | 1_1:+60996332 | None:intergenic |
| TCCAATGCTGATTCAGTGAA+TGG | 0.450902 | 1_1:-60992139 | Msa0033460:CDS |
| TCAAATTCGCAGAACCCAAA+TGG | 0.455534 | 1_1:-60996405 | Msa0033460:exon |
| AATGCAAAAGGATGCAGCTA+TGG | 0.467843 | 1_1:-60992173 | Msa0033460:CDS |
| TGCTCCGTCCAGGCTGATGC+AGG | 0.468473 | 1_1:-60995468 | Msa0033460:intron |
| TCCTGAGAAGCCTGCAGACA+GGG | 0.471244 | 1_1:-60992107 | Msa0033460:CDS |
| CTCTTCTCGGGGTACAAGCT+GGG | 0.477873 | 1_1:-60995198 | Msa0033460:CDS |
| TCCATTCACTGAATCAGCAT+TGG | 0.484524 | 1_1:+60992138 | None:intergenic |
| CTACATAGAAGTAGATCATC+CGG | 0.493035 | 1_1:+60994993 | None:intergenic |
| AAGAATTGAGGATATAGGTC+AGG | 0.494365 | 1_1:-60994832 | Msa0033460:CDS |
| AAACATTTCAAATACCTGTA+AGG | 0.500187 | 1_1:+60994460 | None:intergenic |
| ATGGAAAGAATTGAGGATAT+AGG | 0.501506 | 1_1:-60994837 | Msa0033460:CDS |
| AATCCAGAAAGATTCTATTG+AGG | 0.504272 | 1_1:-60994967 | Msa0033460:CDS |
| CTCCTGAGAAGCCTGCAGAC+AGG | 0.509679 | 1_1:-60992108 | Msa0033460:CDS |
| AATCACTTCACGAAAATTGT+CGG | 0.513242 | 1_1:+60994572 | None:intergenic |
| TTCTGAGCTCCAAGATGCAC+GGG | 0.513678 | 1_1:-60991935 | Msa0033460:CDS |
| ATTCACTGAATCAGCATTGG+AGG | 0.514943 | 1_1:+60992141 | None:intergenic |
| ATTGTGAAACTGTGTTGAGT+TGG | 0.522872 | 1_1:+60996469 | None:intergenic |
| CATATGTATTATACCTTCTG+TGG | 0.523609 | 1_1:+60994791 | None:intergenic |
| CTCAATTGAATGCTTCAACT+CGG | 0.529213 | 1_1:+60992072 | None:intergenic |
| CACGGAGATTTATCCACAGA+AGG | 0.529280 | 1_1:-60994804 | Msa0033460:intron |
| AGTCAGTCTGAAAATGCAAA+AGG | 0.532068 | 1_1:-60992185 | Msa0033460:CDS |
| TTTGCGTCGGTTATCTACTA+GGG | 0.536181 | 1_1:-60994898 | Msa0033460:CDS |
| AATCAACCAACACTGGGATC+AGG | 0.540393 | 1_1:-60995316 | Msa0033460:intron |
| TAATTGCAATCAACCAACAC+TGG | 0.541368 | 1_1:-60995323 | Msa0033460:CDS |
| TTTGCTGTTAGGAGAATGGT+TGG | 0.546271 | 1_1:+60996301 | None:intergenic |
| GCATTCAATTGAGGAAGCCA+AGG | 0.546475 | 1_1:-60992062 | Msa0033460:intron |
| AGGAGAGCTTGACGAGATTG+TGG | 0.546788 | 1_1:-60992236 | Msa0033460:CDS |
| ATGCAAAAGGATGCAGCTAT+GGG | 0.546927 | 1_1:-60992172 | Msa0033460:CDS |
| TAGATAACCGACGCAAAGCA+AGG | 0.550352 | 1_1:+60994904 | None:intergenic |
| GAAACAGGAGTGAGAAGATG+AGG | 0.556873 | 1_1:+60996347 | None:intergenic |
| AAGCCTGCAGACAGGGCCAT+GGG | 0.559995 | 1_1:-60992100 | Msa0033460:CDS |
| GAAGCCTGCAGACAGGGCCA+TGG | 0.560728 | 1_1:-60992101 | Msa0033460:CDS |
| CTCGGGGTACAAGCTGGGAG+AGG | 0.560766 | 1_1:-60995193 | Msa0033460:CDS |
| AGGAAGCCCTTGCTTTGCGT+CGG | 0.560789 | 1_1:-60994911 | Msa0033460:CDS |
| CGAGTTGAAGCATTCAATTG+AGG | 0.561024 | 1_1:-60992071 | Msa0033460:CDS |
| TGATCAGATGGAAAGAATTG+AGG | 0.561074 | 1_1:-60994844 | Msa0033460:CDS |
| CATCCGGATGACACGAAGGA+AGG | 0.572324 | 1_1:+60995009 | None:intergenic |
| TGAGATTACTAATTATGTTG+AGG | 0.578428 | 1_1:-60994931 | Msa0033460:CDS |
| TTTCTGAGCTCCAAGATGCA+CGG | 0.582913 | 1_1:-60991936 | Msa0033460:CDS |
| AGATACCGTTGATGATCAGA+TGG | 0.584592 | 1_1:-60994856 | Msa0033460:CDS |
| GAATAACCTGATCCCAGTGT+TGG | 0.585715 | 1_1:+60995310 | None:intergenic |
| TCAATTTGAGCTATCTGCAA+TGG | 0.594174 | 1_1:-60991866 | Msa0033460:CDS |
| ATCCGGATGACACGAAGGAA+GGG | 0.598223 | 1_1:+60995010 | None:intergenic |
| TCTTTCCATCTGATCATCAA+CGG | 0.601325 | 1_1:+60994851 | None:intergenic |
| AGATAACCGACGCAAAGCAA+GGG | 0.606298 | 1_1:+60994905 | None:intergenic |
| AAACACAAGGAGTATACTGT+TGG | 0.609461 | 1_1:-60994534 | Msa0033460:CDS |
| TCTTGTTGTTGGGTTCGTCG+TGG | 0.614659 | 1_1:+60996372 | None:intergenic |
| GTTGAGTTGGAAAATGAAGA+AGG | 0.619761 | 1_1:+60996482 | None:intergenic |
| TGATGATATGGCTCTTCTCG+GGG | 0.619933 | 1_1:-60995209 | Msa0033460:CDS |
| AATTGCAATCAACCAACACT+GGG | 0.631357 | 1_1:-60995322 | Msa0033460:CDS |
| AAGTACCTTGTGGATTATCG+AGG | 0.633911 | 1_1:+60995143 | None:intergenic |
| CTTCAACTCGGACAAACCCA+TGG | 0.641274 | 1_1:+60992084 | None:intergenic |
| GGTTGAATTTGGTGAAACGC+GGG | 0.644185 | 1_1:+60996322 | None:intergenic |
| AGATCATCCGGATGACACGA+AGG | 0.657010 | 1_1:+60995005 | None:intergenic |
| TACTCTCCATGCAAAACACA+AGG | 0.662712 | 1_1:-60994547 | Msa0033460:CDS |
| TGGTTGAATTTGGTGAAACG+CGG | 0.705123 | 1_1:+60996321 | None:intergenic |
| GATTACCTCGATAATCCACA+AGG | 0.721386 | 1_1:-60995148 | Msa0033460:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTAATAATTAA+AGG | - | chr1_1:60996063-60996082 | Msa0033460:intron | 0.0% |
| !! | AAGAAATATAATTAAACAAA+AGG | + | chr1_1:60994024-60994043 | None:intergenic | 10.0% |
| !!! | AATATTTGTTAAAATATCAT+TGG | - | chr1_1:60994200-60994219 | Msa0033460:intron | 10.0% |
| !! | AAAAGATTATTAAATAGAAT+TGG | + | chr1_1:60994227-60994246 | None:intergenic | 10.0% |
| !!! | ACTTGATTATTTATTTTTTT+TGG | + | chr1_1:60995221-60995240 | None:intergenic | 10.0% |
| !! | TTCTTAGTTATAATTATAAG+CGG | - | chr1_1:60994039-60994058 | Msa0033460:intron | 15.0% |
| !!! | TTCTATTTAATAATCTTTTG+AGG | - | chr1_1:60994228-60994247 | Msa0033460:intron | 15.0% |
| !!! | TCTATTTAATAATCTTTTGA+GGG | - | chr1_1:60994229-60994248 | Msa0033460:intron | 15.0% |
| !!! | TATCAAGTAAATATGAATTT+TGG | - | chr1_1:60994577-60994596 | Msa0033460:CDS | 15.0% |
| !!! | ATCAAGTAAATATGAATTTT+GGG | - | chr1_1:60994578-60994597 | Msa0033460:CDS | 15.0% |
| !! | TTGAATATATCCTAAATATT+GGG | + | chr1_1:60995000-60995019 | None:intergenic | 15.0% |
| !! | TTTGAATATATCCTAAATAT+TGG | + | chr1_1:60995001-60995020 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTTTTGGTAGAT+AGG | + | chr1_1:60995213-60995232 | None:intergenic | 15.0% |
| !!! | AAATCTAATTTTATGTTTAG+AGG | + | chr1_1:60995338-60995357 | None:intergenic | 15.0% |
| !! | TAATTAAGTAAATTATCAAG+AGG | - | chr1_1:60995662-60995681 | Msa0033460:intron | 15.0% |
| !! | ATGATAAATTCTTGTGTAAT+TGG | - | chr1_1:60992132-60992151 | Msa0033460:CDS | 20.0% |
| !!! | TGTGCTTAATATTTTTTAGA+GGG | - | chr1_1:60992756-60992775 | Msa0033460:intron | 20.0% |
| !! | CATATAAACAAATCATCATT+AGG | + | chr1_1:60992807-60992826 | None:intergenic | 20.0% |
| !!! | GTACTATATTGTTTTTACTA+AGG | - | chr1_1:60993573-60993592 | Msa0033460:intron | 20.0% |
| !! | TCATGTATACATATGATATA+TGG | + | chr1_1:60993619-60993638 | None:intergenic | 20.0% |
| !!! | GAAGTTTAAAATAATTCAGT+AGG | - | chr1_1:60993923-60993942 | Msa0033460:intron | 20.0% |
| !! | ATCTTGATTATCATAAAATG+TGG | - | chr1_1:60993956-60993975 | Msa0033460:intron | 20.0% |
| !! | TCTTGATTATCATAAAATGT+GGG | - | chr1_1:60993957-60993976 | Msa0033460:intron | 20.0% |
| !!! | AAGCAGCATTTTTTATTAAA+AGG | - | chr1_1:60993991-60994010 | Msa0033460:intron | 20.0% |
| !!! | AGCATTTTTTATTAAAAGGA+AGG | - | chr1_1:60993995-60994014 | Msa0033460:intron | 20.0% |
| !!! | AAATCTTTGAAGAATCAAAT+TGG | + | chr1_1:60994095-60994114 | None:intergenic | 20.0% |
| !!! | ATATTAAAAGGAATGGTTTT+TGG | - | chr1_1:60994141-60994160 | Msa0033460:intron | 20.0% |
| !! | TGATTAATGTTCGAATAATA+TGG | - | chr1_1:60994387-60994406 | Msa0033460:intron | 20.0% |
| !! | TCATGAAATATAAGGAATTA+TGG | + | chr1_1:60994476-60994495 | None:intergenic | 20.0% |
| !!! | TCAAGTAAATATGAATTTTG+GGG | - | chr1_1:60994579-60994598 | Msa0033460:CDS | 20.0% |
| !! | GATATATTCAAATTTCAATG+AGG | - | chr1_1:60995009-60995028 | Msa0033460:CDS | 20.0% |
| !! | ATATGTCAGTTAGATAAATA+GGG | - | chr1_1:60995072-60995091 | Msa0033460:intron | 20.0% |
| !! | AATTTGATGTTTGTGTAAAA+GGG | - | chr1_1:60995124-60995143 | Msa0033460:intron | 20.0% |
| !! | CATAAATTAATTACCATGTT+AGG | + | chr1_1:60995395-60995414 | None:intergenic | 20.0% |
| !! | TAAATATTCAGATTAATGCA+AGG | + | chr1_1:60995454-60995473 | None:intergenic | 20.0% |
| !! | TTGCATTAATCTGAATATTT+AGG | - | chr1_1:60995453-60995472 | Msa0033460:CDS | 20.0% |
| !! | ATGAAGTGCAAAAAAAAAAT+TGG | + | chr1_1:60995829-60995848 | None:intergenic | 20.0% |
| !!! | AAGTTTACATTTTTGCTGTT+AGG | + | chr1_1:60992032-60992051 | None:intergenic | 25.0% |
| ! | TTGATCATGTTTATATACTG+TGG | - | chr1_1:60992077-60992096 | Msa0033460:CDS | 25.0% |
| !!! | TATGAAACTATGGTTTTGTT+TGG | - | chr1_1:60992244-60992263 | Msa0033460:intron | 25.0% |
| ! | GATAAGAAATTAATGAAGCA+CGG | + | chr1_1:60992451-60992470 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAGAGATACCTT+AGG | + | chr1_1:60992579-60992598 | None:intergenic | 25.0% |
| ! | TTATGTATGTTAGATTTGTG+TGG | - | chr1_1:60992703-60992722 | Msa0033460:intron | 25.0% |
| !!! | GTGTGCTTAATATTTTTTAG+AGG | - | chr1_1:60992755-60992774 | Msa0033460:intron | 25.0% |
| !!! | GTGCTTAATATTTTTTAGAG+GGG | - | chr1_1:60992757-60992776 | Msa0033460:intron | 25.0% |
| !!! | TGTTTTAATTGCGTAATAAC+TGG | - | chr1_1:60992825-60992844 | Msa0033460:intron | 25.0% |
| ! | ATTCAAGAATATGACAAAAC+TGG | + | chr1_1:60993049-60993068 | None:intergenic | 25.0% |
| ! | TGAGATTACTAATTATGTTG+AGG | - | chr1_1:60993388-60993407 | Msa0033460:intron | 25.0% |
| !! | GTTTTTACTAAGGATTGAAT+TGG | - | chr1_1:60993583-60993602 | Msa0033460:intron | 25.0% |
| !! | ACTTTTGCTTTACTTATACT+TGG | - | chr1_1:60993668-60993687 | Msa0033460:intron | 25.0% |
| !! | CTTTTGCTTTACTTATACTT+GGG | - | chr1_1:60993669-60993688 | Msa0033460:intron | 25.0% |
| ! | TATCATCAATCTTAGACATT+TGG | + | chr1_1:60993712-60993731 | None:intergenic | 25.0% |
| ! | AAACATTTCAAATACCTGTA+AGG | + | chr1_1:60993862-60993881 | None:intergenic | 25.0% |
| ! | AAACTTCATAATAACTGAAG+TGG | + | chr1_1:60993910-60993929 | None:intergenic | 25.0% |
| !!! | CATAAAATGTGGGTTTTAAA+TGG | - | chr1_1:60993967-60993986 | Msa0033460:intron | 25.0% |
| ! | ATAAGCGGTAGTATTATATA+TGG | - | chr1_1:60994054-60994073 | Msa0033460:intron | 25.0% |
| ! | TTGACCATGGAAATATTAAA+AGG | - | chr1_1:60994129-60994148 | Msa0033460:intron | 25.0% |
| !! | CATTCCTTTTAATATTTCCA+TGG | + | chr1_1:60994136-60994155 | None:intergenic | 25.0% |
| ! | CATGGAAATATTAAAAGGAA+TGG | - | chr1_1:60994134-60994153 | Msa0033460:intron | 25.0% |
| ! | AACAAATATTACTGCATACA+GGG | + | chr1_1:60994190-60994209 | None:intergenic | 25.0% |
| ! | TAACAAATATTACTGCATAC+AGG | + | chr1_1:60994191-60994210 | None:intergenic | 25.0% |
| !! | AAATCTTTCGAGTATCTAAA+TGG | - | chr1_1:60994270-60994289 | Msa0033460:intron | 25.0% |
| !! | AATCTTTCGAGTATCTAAAT+GGG | - | chr1_1:60994271-60994290 | Msa0033460:intron | 25.0% |
| ! | GTTTACCATAAAGTTATAGT+GGG | - | chr1_1:60994294-60994313 | Msa0033460:intron | 25.0% |
| ! | TTTACCATAAAGTTATAGTG+GGG | - | chr1_1:60994295-60994314 | Msa0033460:intron | 25.0% |
| !! | ATTTTCGTATCTTGAAACAA+AGG | - | chr1_1:60994430-60994449 | Msa0033460:intron | 25.0% |
| ! | GAAATGGATCATGAAATATA+AGG | + | chr1_1:60994484-60994503 | None:intergenic | 25.0% |
| ! | AGTCCAGTTAAAGTATAAAT+AGG | - | chr1_1:60994525-60994544 | Msa0033460:CDS | 25.0% |
| ! | GTCCAGTTAAAGTATAAATA+GGG | - | chr1_1:60994526-60994545 | Msa0033460:CDS | 25.0% |
| ! | ATCCCTATTTATACTTTAAC+TGG | + | chr1_1:60994531-60994550 | None:intergenic | 25.0% |
| ! | GTTAAAGTATAAATAGGGAT+TGG | - | chr1_1:60994531-60994550 | Msa0033460:CDS | 25.0% |
| ! | ATGTTTGGATGAAAAGAAAA+GGG | - | chr1_1:60994627-60994646 | Msa0033460:intron | 25.0% |
| !! | TAGTTAGTTAGTGTTGAAAT+TGG | - | chr1_1:60994664-60994683 | Msa0033460:intron | 25.0% |
| !! | AGTTAGTTAGTGTTGAAATT+GGG | - | chr1_1:60994665-60994684 | Msa0033460:intron | 25.0% |
| ! | CTTGATAAGAGTTTATAAAG+AGG | + | chr1_1:60994737-60994756 | None:intergenic | 25.0% |
| ! | CATATGTCAGTTAGATAAAT+AGG | - | chr1_1:60995071-60995090 | Msa0033460:intron | 25.0% |
| ! | TATGTCAGTTAGATAAATAG+GGG | - | chr1_1:60995073-60995092 | Msa0033460:intron | 25.0% |
| ! | ATAAATAGGGGAAATAAAGA+TGG | - | chr1_1:60995085-60995104 | Msa0033460:intron | 25.0% |
| ! | GAATTTGATGTTTGTGTAAA+AGG | - | chr1_1:60995123-60995142 | Msa0033460:intron | 25.0% |
| ! | ATTTGATGTTTGTGTAAAAG+GGG | - | chr1_1:60995125-60995144 | Msa0033460:intron | 25.0% |
| ! | AAATAGGATGAAAGATAGAA+AGG | + | chr1_1:60995254-60995273 | None:intergenic | 25.0% |
| ! | AGAGATTGGAATTGAAAAAT+AGG | + | chr1_1:60995270-60995289 | None:intergenic | 25.0% |
| ! | TTTATGATGAATTCCTAACA+TGG | - | chr1_1:60995379-60995398 | Msa0033460:CDS | 25.0% |
| ! | ATCTGAATATTTAGGCAAAT+AGG | - | chr1_1:60995461-60995480 | Msa0033460:intron | 25.0% |
| ! | TAAATTATCAAGAGGAGTTA+TGG | - | chr1_1:60995670-60995689 | Msa0033460:intron | 25.0% |
| !!! | TTTTAAAAATTAGTCCGAAC+TGG | - | chr1_1:60995711-60995730 | Msa0033460:intron | 25.0% |
| ! | AATTCTCTGCATAAATATCA+GGG | + | chr1_1:60995968-60995987 | None:intergenic | 25.0% |
| ! | AAATTCTCTGCATAAATATC+AGG | + | chr1_1:60995969-60995988 | None:intergenic | 25.0% |
| !!! | CTTATTGGCTCATATAAATT+TGG | - | chr1_1:60996008-60996027 | Msa0033460:intron | 25.0% |
| ! | AATCACAAAAAGTTAAACCT+TGG | + | chr1_1:60996277-60996296 | None:intergenic | 25.0% |
| ! | AAAGAATCGACAAAAATGAA+TGG | + | chr1_1:60996313-60996332 | None:intergenic | 25.0% |
| !! | CTTTGTCTAAGATATATGTT+TGG | - | chr1_1:60996329-60996348 | Msa0033460:CDS | 25.0% |
| TTCTGCGAATTTGAAGAAAA+AGG | + | chr1_1:60991908-60991927 | None:intergenic | 30.0% | |
| !!! | ATTGGATTTTTAGAGCTGAT+TGG | - | chr1_1:60992150-60992169 | Msa0033460:CDS | 30.0% |
| !!! | ATTGGGTTTTTTGAAAGAAG+TGG | - | chr1_1:60992192-60992211 | Msa0033460:CDS | 30.0% |
| ATATCCAGCTTATGAAAGTT+AGG | - | chr1_1:60992518-60992537 | Msa0033460:intron | 30.0% | |
| GATTTGTGTGGTAAAGATTT+CGG | - | chr1_1:60992715-60992734 | Msa0033460:intron | 30.0% | |
| ATTTGTGTGGTAAAGATTTC+GGG | - | chr1_1:60992716-60992735 | Msa0033460:intron | 30.0% | |
| !! | AACTTATTTCCGTTTCTAGT+TGG | - | chr1_1:60993086-60993105 | Msa0033460:intron | 30.0% |
| TATCATCAACCAACTAGAAA+CGG | + | chr1_1:60993098-60993117 | None:intergenic | 30.0% | |
| !! | TTTCTAGTTGGTTGATGATA+TGG | - | chr1_1:60993098-60993117 | Msa0033460:intron | 30.0% |
| ! | CAAAGATTCTTTGGAAACTT+TGG | - | chr1_1:60993149-60993168 | Msa0033460:intron | 30.0% |
| ! | ACTGACTTTACTTTCTTTCT+AGG | - | chr1_1:60993284-60993303 | Msa0033460:intron | 30.0% |
| AATCCAGAAAGATTCTATTG+AGG | - | chr1_1:60993352-60993371 | Msa0033460:intron | 30.0% | |
| ATCCAGAAAGATTCTATTGA+GGG | - | chr1_1:60993353-60993372 | Msa0033460:intron | 30.0% | |
| ATGGAAAGAATTGAGGATAT+AGG | - | chr1_1:60993482-60993501 | Msa0033460:intron | 30.0% | |
| CATATGTATTATACCTTCTG+TGG | + | chr1_1:60993531-60993550 | None:intergenic | 30.0% | |
| ! | GATTGATGATATGACGAAAA+AGG | - | chr1_1:60993721-60993740 | Msa0033460:intron | 30.0% |
| AATCACTTCACGAAAATTGT+CGG | + | chr1_1:60993750-60993769 | None:intergenic | 30.0% | |
| ACAAATATTACTGCATACAG+GGG | + | chr1_1:60994189-60994208 | None:intergenic | 30.0% | |
| ! | ATCTTTCGAGTATCTAAATG+GGG | - | chr1_1:60994272-60994291 | Msa0033460:intron | 30.0% |
| GGTTTACCATAAAGTTATAG+TGG | - | chr1_1:60994293-60994312 | Msa0033460:intron | 30.0% | |
| ! | CTTTTCTTTTCATCCAAACA+TGG | + | chr1_1:60994628-60994647 | None:intergenic | 30.0% |
| CATGTTTGGATGAAAAGAAA+AGG | - | chr1_1:60994626-60994645 | Msa0033460:intron | 30.0% | |
| ! | GTTAGTTAGTGTTGAAATTG+GGG | - | chr1_1:60994666-60994685 | Msa0033460:intron | 30.0% |
| GATAAGAGTTTATAAAGAGG+AGG | + | chr1_1:60994734-60994753 | None:intergenic | 30.0% | |
| TCTGATACCATGTTGATATT+AGG | - | chr1_1:60994871-60994890 | Msa0033460:CDS | 30.0% | |
| CTGATACCATGTTGATATTA+GGG | - | chr1_1:60994872-60994891 | Msa0033460:CDS | 30.0% | |
| CTTGATGAGAGTTTATAAAG+AGG | + | chr1_1:60994943-60994962 | None:intergenic | 30.0% | |
| TTAGGTCTTTCCCAATATTT+AGG | - | chr1_1:60994987-60995006 | Msa0033460:CDS | 30.0% | |
| ATATGAACAGTTAGAGAAGT+TGG | - | chr1_1:60995036-60995055 | Msa0033460:intron | 30.0% | |
| ! | AGTTAGAGAAGTTGGTTAAT+TGG | - | chr1_1:60995044-60995063 | Msa0033460:intron | 30.0% |
| AAGATGGAAAAGTTCATTCA+AGG | - | chr1_1:60995101-60995120 | Msa0033460:intron | 30.0% | |
| TTCAGATTAATGCAAGGTAT+TGG | + | chr1_1:60995448-60995467 | None:intergenic | 30.0% | |
| !! | TTTATCTGCTTTTCGATGAA+TGG | - | chr1_1:60995513-60995532 | Msa0033460:intron | 30.0% |
| ! | ATTACAATTTTCTCCCTACT+CGG | + | chr1_1:60995622-60995641 | None:intergenic | 30.0% |
| AAGAGGAGTTATGGTTAATT+AGG | - | chr1_1:60995679-60995698 | Msa0033460:intron | 30.0% | |
| AAACTAACAGGCAAATTGTT+AGG | + | chr1_1:60995762-60995781 | None:intergenic | 30.0% | |
| AAAAAATTGGTTGAACCAAC+CGG | + | chr1_1:60995816-60995835 | None:intergenic | 30.0% | |
| ! | TACGATTCTGAAGATCTTAT+TGG | - | chr1_1:60995993-60996012 | Msa0033460:intron | 30.0% |
| GCTCATATAAATTTGGTTGA+TGG | - | chr1_1:60996015-60996034 | Msa0033460:intron | 30.0% | |
| AAAGAAATTCCAAGAACTTC+AGG | - | chr1_1:60996426-60996445 | Msa0033460:five_prime_UTR | 30.0% | |
| !! | GTTGAGTTGGAAAATGAAGA+AGG | + | chr1_1:60991840-60991859 | None:intergenic | 35.0% |
| ATTGTGAAACTGTGTTGAGT+TGG | + | chr1_1:60991853-60991872 | None:intergenic | 35.0% | |
| ! | GTGGTCTGAATTTTCCATTT+GGG | + | chr1_1:60991931-60991950 | None:intergenic | 35.0% |
| !!! | CATTTTTGCTGTTAGGAGAA+TGG | + | chr1_1:60992025-60992044 | None:intergenic | 35.0% |
| !!! | TTTAGAGCTGATTGGTTTTG+TGG | - | chr1_1:60992158-60992177 | Msa0033460:CDS | 35.0% |
| !!! | TTAGAGCTGATTGGTTTTGT+GGG | - | chr1_1:60992159-60992178 | Msa0033460:CDS | 35.0% |
| TTTGTGGGTATCTACTGAAT+TGG | - | chr1_1:60992174-60992193 | Msa0033460:CDS | 35.0% | |
| TTGTGGGTATCTACTGAATT+GGG | - | chr1_1:60992175-60992194 | Msa0033460:CDS | 35.0% | |
| GCTCACTAACTATGAAACTA+TGG | - | chr1_1:60992234-60992253 | Msa0033460:CDS | 35.0% | |
| TTCACCTAACTTTCATAAGC+TGG | + | chr1_1:60992525-60992544 | None:intergenic | 35.0% | |
| !! | TATCGTAAGCTGTTTTCCTA+AGG | - | chr1_1:60992560-60992579 | Msa0033460:intron | 35.0% |
| TTTGTGTGGTAAAGATTTCG+GGG | - | chr1_1:60992717-60992736 | Msa0033460:intron | 35.0% | |
| TAATTGCAATCAACCAACAC+TGG | - | chr1_1:60992996-60993015 | Msa0033460:intron | 35.0% | |
| AATTGCAATCAACCAACACT+GGG | - | chr1_1:60992997-60993016 | Msa0033460:intron | 35.0% | |
| TTCTTGAATGATGTGCACAT+TGG | - | chr1_1:60993060-60993079 | Msa0033460:intron | 35.0% | |
| CTACATAGAAGTAGATCATC+CGG | + | chr1_1:60993329-60993348 | None:intergenic | 35.0% | |
| TTCCCTCAATAGAATCTTTC+TGG | + | chr1_1:60993358-60993377 | None:intergenic | 35.0% | |
| TCTTTCCATCTGATCATCAA+CGG | + | chr1_1:60993471-60993490 | None:intergenic | 35.0% | |
| TGATCAGATGGAAAGAATTG+AGG | - | chr1_1:60993475-60993494 | Msa0033460:intron | 35.0% | |
| AAGAATTGAGGATATAGGTC+AGG | - | chr1_1:60993487-60993506 | Msa0033460:intron | 35.0% | |
| ! | GATATAGGTCAGGTTTTACA+CGG | - | chr1_1:60993497-60993516 | Msa0033460:intron | 35.0% |
| TGATGATATGACGAAAAAGG+AGG | - | chr1_1:60993724-60993743 | Msa0033460:intron | 35.0% | |
| ! | TATACTCCTTGTGTTTTGCA+TGG | + | chr1_1:60993781-60993800 | None:intergenic | 35.0% |
| ! | AAACACAAGGAGTATACTGT+TGG | - | chr1_1:60993785-60993804 | Msa0033460:intron | 35.0% |
| TTCGAACATCAATTTGACCA+TGG | - | chr1_1:60994116-60994135 | Msa0033460:intron | 35.0% | |
| GTCACTACATGACATCAATT+TGG | - | chr1_1:60994163-60994182 | Msa0033460:intron | 35.0% | |
| AATTGTACAGAGAACATCTC+TGG | - | chr1_1:60994333-60994352 | Msa0033460:intron | 35.0% | |
| ATCCATTTCCTCGTTTAATC+AGG | - | chr1_1:60994495-60994514 | Msa0033460:CDS | 35.0% | |
| TCTTAAGTCCTGATTAAACG+AGG | + | chr1_1:60994506-60994525 | None:intergenic | 35.0% | |
| !!! | CTCTTTTTTCTCTCCATGTT+TGG | - | chr1_1:60994612-60994631 | Msa0033460:CDS | 35.0% |
| GTAACTCATCCTTACAAAAC+CGG | - | chr1_1:60994896-60994915 | Msa0033460:CDS | 35.0% | |
| ! | TAGAGAAGTTGGTTAATTGG+AGG | - | chr1_1:60995047-60995066 | Msa0033460:intron | 35.0% |
| ! | AGAGAAGTTGGTTAATTGGA+GGG | - | chr1_1:60995048-60995067 | Msa0033460:intron | 35.0% |
| ATGATTTAATCCTGCTCCAA+GGG | + | chr1_1:60995154-60995173 | None:intergenic | 35.0% | |
| AATGATTTAATCCTGCTCCA+AGG | + | chr1_1:60995155-60995174 | None:intergenic | 35.0% | |
| AGTAACTTATGAGCAGAGAT+TGG | + | chr1_1:60995284-60995303 | None:intergenic | 35.0% | |
| !! | GATTAATGCAAGGTATTGGT+TGG | + | chr1_1:60995444-60995463 | None:intergenic | 35.0% |
| !! | AAAAGTAACACTAGCCTTAG+TGG | - | chr1_1:60995572-60995591 | Msa0033460:intron | 35.0% |
| ! | TTTGCCTGTTAGTTTGATCT+CGG | - | chr1_1:60995767-60995786 | Msa0033460:intron | 35.0% |
| AAAAATTGGTTGAACCAACC+GGG | + | chr1_1:60995815-60995834 | None:intergenic | 35.0% | |
| TTTCGCATTCTATTAATCCG+TGG | - | chr1_1:60995877-60995896 | Msa0033460:intron | 35.0% | |
| ! | CATAAATATCAGGGTGTTAC+CGG | + | chr1_1:60995959-60995978 | None:intergenic | 35.0% |
| AGTCAGTCTGAAAATGCAAA+AGG | - | chr1_1:60996134-60996153 | Msa0033460:intron | 35.0% | |
| CTCAATTGAATGCTTCAACT+CGG | + | chr1_1:60996250-60996269 | None:intergenic | 35.0% | |
| GAATCGACAAAAATGAATGG+TGG | + | chr1_1:60996310-60996329 | None:intergenic | 35.0% | |
| ATTGACAAACCTGAAGTTCT+TGG | + | chr1_1:60996438-60996457 | None:intergenic | 35.0% | |
| TCAATTTGAGCTATCTGCAA+TGG | - | chr1_1:60996453-60996472 | Msa0033460:five_prime_UTR | 35.0% | |
| CTTCTTCCTAATGCTTCGTT+TGG | - | chr1_1:60991880-60991899 | Msa0033460:CDS | 40.0% | |
| ! | AAGGAACCAAACGAAGCATT+AGG | + | chr1_1:60991889-60991908 | None:intergenic | 40.0% |
| TCAAATTCGCAGAACCCAAA+TGG | - | chr1_1:60991914-60991933 | Msa0033460:CDS | 40.0% | |
| ! | CGTGGTCTGAATTTTCCATT+TGG | + | chr1_1:60991932-60991951 | None:intergenic | 40.0% |
| !! | AGATGAGGCTTCTTGTTGTT+GGG | + | chr1_1:60991960-60991979 | None:intergenic | 40.0% |
| ! | AAGATGAGGCTTCTTGTTGT+TGG | + | chr1_1:60991961-60991980 | None:intergenic | 40.0% |
| ! | TGGTTGAATTTGGTGAAACG+CGG | + | chr1_1:60992001-60992020 | None:intergenic | 40.0% |
| ! | GGAGAATGGTTGGTTGAATT+TGG | + | chr1_1:60992011-60992030 | None:intergenic | 40.0% |
| !! | TTTGCTGTTAGGAGAATGGT+TGG | + | chr1_1:60992021-60992040 | None:intergenic | 40.0% |
| AGTCGATCTAAACAGACTCT+AGG | - | chr1_1:60992622-60992641 | Msa0033460:intron | 40.0% | |
| GTCGATCTAAACAGACTCTA+GGG | - | chr1_1:60992623-60992642 | Msa0033460:intron | 40.0% | |
| GGGCTATGAAGAGTAGAAAA+AGG | - | chr1_1:60992643-60992662 | Msa0033460:intron | 40.0% | |
| !! | GTTGATGATATGGCTCTTCT+CGG | - | chr1_1:60993108-60993127 | Msa0033460:intron | 40.0% |
| ! | TTGATGATATGGCTCTTCTC+GGG | - | chr1_1:60993109-60993128 | Msa0033460:intron | 40.0% |
| GATTACCTCGATAATCCACA+AGG | - | chr1_1:60993171-60993190 | Msa0033460:intron | 40.0% | |
| ! | AAGTACCTTGTGGATTATCG+AGG | + | chr1_1:60993179-60993198 | None:intergenic | 40.0% |
| ! | GTGCTTGTTAAAGTACCTTG+TGG | + | chr1_1:60993189-60993208 | None:intergenic | 40.0% |
| !! | TTTGCGTCGGTTATCTACTA+GGG | - | chr1_1:60993421-60993440 | Msa0033460:intron | 40.0% |
| !! | AGATACCGTTGATGATCAGA+TGG | - | chr1_1:60993463-60993482 | Msa0033460:intron | 40.0% |
| TACTCTCCATGCAAAACACA+AGG | - | chr1_1:60993772-60993791 | Msa0033460:intron | 40.0% | |
| TCTGACATTAAACGCCTTAC+AGG | - | chr1_1:60993845-60993864 | Msa0033460:intron | 40.0% | |
| GATGCCCCACTATAACTTTA+TGG | + | chr1_1:60994302-60994321 | None:intergenic | 40.0% | |
| TGAAACAAAGGTGATCTCTG+AGG | - | chr1_1:60994442-60994461 | Msa0033460:intron | 40.0% | |
| GTCCTGATTAAACGAGGAAA+TGG | + | chr1_1:60994500-60994519 | None:intergenic | 40.0% | |
| CTAACTCAGCCTTACAAAAC+CGG | - | chr1_1:60994690-60994709 | Msa0033460:intron | 40.0% | |
| !! | TCTTATGAGCCGGTTTTGTA+AGG | + | chr1_1:60994702-60994721 | None:intergenic | 40.0% |
| AAAAACCCAAGTCCTACTTC+GGG | + | chr1_1:60994771-60994790 | None:intergenic | 40.0% | |
| GAAAAACCCAAGTCCTACTT+CGG | + | chr1_1:60994772-60994791 | None:intergenic | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+GGG | + | chr1_1:60994856-60994875 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | + | chr1_1:60994857-60994876 | None:intergenic | 40.0% | |
| GTTACGCCCTAATATCAACA+TGG | + | chr1_1:60994881-60994900 | None:intergenic | 40.0% | |
| !! | TCTTATGAGCCGGTTTTGTA+AGG | + | chr1_1:60994702-60994721 | None:intergenic | 40.0% |
| ACACTCTTCATCTTATGAGC+CGG | + | chr1_1:60994918-60994937 | None:intergenic | 40.0% | |
| AAAGACCTAAGTCCTACTTC+GGG | + | chr1_1:60994977-60994996 | None:intergenic | 40.0% | |
| GAAAGACCTAAGTCCTACTT+CGG | + | chr1_1:60994978-60994997 | None:intergenic | 40.0% | |
| AAAAATTAGTCCGAACTGGC+TGG | - | chr1_1:60995715-60995734 | Msa0033460:intron | 40.0% | |
| GTAACCGAGATCAAACTAAC+AGG | + | chr1_1:60995774-60995793 | None:intergenic | 40.0% | |
| AAAATTGGTTGAACCAACCG+GGG | + | chr1_1:60995814-60995833 | None:intergenic | 40.0% | |
| TGGTTCTCTTGGTTTAACCA+CGG | + | chr1_1:60995897-60995916 | None:intergenic | 40.0% | |
| AATGCAAAAGGATGCAGCTA+TGG | - | chr1_1:60996146-60996165 | Msa0033460:intron | 40.0% | |
| ATGCAAAAGGATGCAGCTAT+GGG | - | chr1_1:60996147-60996166 | Msa0033460:intron | 40.0% | |
| ! | ATTCACTGAATCAGCATTGG+AGG | + | chr1_1:60996181-60996200 | None:intergenic | 40.0% |
| !! | TCCAATGCTGATTCAGTGAA+TGG | - | chr1_1:60996180-60996199 | Msa0033460:intron | 40.0% |
| TCCATTCACTGAATCAGCAT+TGG | + | chr1_1:60996184-60996203 | None:intergenic | 40.0% | |
| ! | CGAGTTGAAGCATTCAATTG+AGG | - | chr1_1:60996248-60996267 | Msa0033460:intron | 40.0% |
| ! | CGACAAAAATGAATGGTGGA+AGG | + | chr1_1:60996306-60996325 | None:intergenic | 40.0% |
| GAAACAGGAGTGAGAAGATG+AGG | + | chr1_1:60991975-60991994 | None:intergenic | 45.0% | |
| ! | GGTTGAATTTGGTGAAACGC+GGG | + | chr1_1:60992000-60992019 | None:intergenic | 45.0% |
| !! | TCAGAAGTGTCAGTGCTACA+TGG | + | chr1_1:60992303-60992322 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCTGATAGA+AGG | - | chr1_1:60992307-60992326 | Msa0033460:intron | 45.0% |
| CTGACACTTCTGATAGAAGG+CGG | - | chr1_1:60992310-60992329 | Msa0033460:intron | 45.0% | |
| TGAAGCACGGACACTTACAT+CGG | + | chr1_1:60992438-60992457 | None:intergenic | 45.0% | |
| AACGCAGAAACACGCTTTAC+AGG | - | chr1_1:60992916-60992935 | Msa0033460:intron | 45.0% | |
| AATCAACCAACACTGGGATC+AGG | - | chr1_1:60993003-60993022 | Msa0033460:intron | 45.0% | |
| GAATAACCTGATCCCAGTGT+TGG | + | chr1_1:60993012-60993031 | None:intergenic | 45.0% | |
| TGATGATATGGCTCTTCTCG+GGG | - | chr1_1:60993110-60993129 | Msa0033460:intron | 45.0% | |
| TGGGAGAGGCAAAGATTCTT+TGG | - | chr1_1:60993140-60993159 | Msa0033460:intron | 45.0% | |
| AGATAACCGACGCAAAGCAA+GGG | + | chr1_1:60993417-60993436 | None:intergenic | 45.0% | |
| TAGATAACCGACGCAAAGCA+AGG | + | chr1_1:60993418-60993437 | None:intergenic | 45.0% | |
| !! | CTTTGCGTCGGTTATCTACT+AGG | - | chr1_1:60993420-60993439 | Msa0033460:intron | 45.0% |
| CACGGAGATTTATCCACAGA+AGG | - | chr1_1:60993515-60993534 | Msa0033460:intron | 45.0% | |
| !! | CGGTTTTGTAAGGCTGAGTT+AGG | + | chr1_1:60994692-60994711 | None:intergenic | 45.0% |
| ! | CAAAACCGGCTCATAAGATG+AGG | - | chr1_1:60994704-60994723 | Msa0033460:intron | 45.0% |
| ! | GAGTCTTATCTACCCGAAGT+AGG | - | chr1_1:60994756-60994775 | Msa0033460:intron | 45.0% |
| TATCTACCCGAAGTAGGACT+TGG | - | chr1_1:60994762-60994781 | Msa0033460:intron | 45.0% | |
| ATCTACCCGAAGTAGGACTT+GGG | - | chr1_1:60994763-60994782 | Msa0033460:intron | 45.0% | |
| !! | AAAAAGAGTGCTGGGCGTAA+GGG | + | chr1_1:60994806-60994825 | None:intergenic | 45.0% |
| ! | TTACGCCCAGCACTCTTTTT+GGG | - | chr1_1:60994806-60994825 | Msa0033460:CDS | 45.0% |
| ! | GAGTCTTATCTACCCGAAGT+AGG | - | chr1_1:60994756-60994775 | Msa0033460:intron | 45.0% |
| ATCTACCCGAAGTAGGACTT+AGG | - | chr1_1:60994763-60994782 | Msa0033460:intron | 45.0% | |
| TGTGTAAAAGGGGAAACCCT+TGG | - | chr1_1:60995135-60995154 | Msa0033460:intron | 45.0% | |
| !! | AGTAACACTAGCCTTAGTGG+AGG | - | chr1_1:60995575-60995594 | Msa0033460:intron | 45.0% |
| CAAAACTGCATCCTCCACTA+AGG | + | chr1_1:60995589-60995608 | None:intergenic | 45.0% | |
| TTTGCAGTAGTATGCCGAGT+AGG | - | chr1_1:60995605-60995624 | Msa0033460:intron | 45.0% | |
| TTGCAGTAGTATGCCGAGTA+GGG | - | chr1_1:60995606-60995625 | Msa0033460:intron | 45.0% | |
| ACCAATTGAACCAGCCAGTT+CGG | + | chr1_1:60995728-60995747 | None:intergenic | 45.0% | |
| ATCTCGGTTACATTGCAGTC+TGG | - | chr1_1:60995783-60995802 | Msa0033460:intron | 45.0% | |
| !! | CTCTAGGACATTGGTTCTCT+TGG | + | chr1_1:60995908-60995927 | None:intergenic | 45.0% |
| CAAGAGAACCAATGTCCTAG+AGG | - | chr1_1:60995906-60995925 | Msa0033460:intron | 45.0% | |
| TACCGGAGTGGATATTGAAC+CGG | + | chr1_1:60995942-60995961 | None:intergenic | 45.0% | |
| GCATTCAATTGAGGAAGCCA+AGG | - | chr1_1:60996257-60996276 | Msa0033460:intron | 45.0% | |
| TTTCTGAGCTCCAAGATGCA+CGG | - | chr1_1:60996383-60996402 | Msa0033460:CDS | 45.0% | |
| ! | GATTTTCTTCCCGTGCATCT+TGG | + | chr1_1:60996396-60996415 | None:intergenic | 45.0% |
| !! | TCTTGTTGTTGGGTTCGTCG+TGG | + | chr1_1:60991950-60991969 | None:intergenic | 50.0% |
| TAACTGGAAATGCTCCGTCC+AGG | - | chr1_1:60992841-60992860 | Msa0033460:intron | 50.0% | |
| !! | GCTGAACAAGCTGCTGATTC+TGG | + | chr1_1:60992889-60992908 | None:intergenic | 50.0% |
| TTCCCTTCCTTCGTGTCATC+CGG | - | chr1_1:60993307-60993326 | Msa0033460:intron | 50.0% | |
| ATCCGGATGACACGAAGGAA+GGG | + | chr1_1:60993312-60993331 | None:intergenic | 50.0% | |
| AGATCATCCGGATGACACGA+AGG | + | chr1_1:60993317-60993336 | None:intergenic | 50.0% | |
| GCACTCCTCATCTTATGAGC+CGG | + | chr1_1:60994712-60994731 | None:intergenic | 50.0% | |
| !! | AAAAGAGTGCTGGGCGTAAG+GGG | + | chr1_1:60994805-60994824 | None:intergenic | 50.0% |
| !! | CAAAAAGAGTGCTGGGCGTA+AGG | + | chr1_1:60994807-60994826 | None:intergenic | 50.0% |
| ! | CTTACGCCCAGCACTCTTTT+TGG | - | chr1_1:60994805-60994824 | Msa0033460:CDS | 50.0% |
| !! | CCAAGCCCAAAAAGAGTGCT+GGG | + | chr1_1:60994814-60994833 | None:intergenic | 50.0% |
| ! | ACCAAGCCCAAAAAGAGTGC+TGG | + | chr1_1:60994815-60994834 | None:intergenic | 50.0% |
| ! | TCCGAACTGGCTGGTTCAAT+TGG | - | chr1_1:60995724-60995743 | Msa0033460:intron | 50.0% |
| ATTGCAGTCTGGTTGAACCC+CGG | - | chr1_1:60995794-60995813 | Msa0033460:intron | 50.0% | |
| ! | ATATCAGGGTGTTACCGGAG+TGG | + | chr1_1:60995954-60995973 | None:intergenic | 50.0% |
| AGGAGAGCTTGACGAGATTG+TGG | - | chr1_1:60996083-60996102 | Msa0033460:intron | 50.0% | |
| CTTCAACTCGGACAAACCCA+TGG | + | chr1_1:60996238-60996257 | None:intergenic | 50.0% | |
| TTCTGAGCTCCAAGATGCAC+GGG | - | chr1_1:60996384-60996403 | Msa0033460:CDS | 50.0% | |
| GGTGAAACGCGGGAAGAAAC+AGG | + | chr1_1:60991990-60992009 | None:intergenic | 55.0% | |
| GTAAGAGACCTGCATCAGCC+TGG | + | chr1_1:60992862-60992881 | None:intergenic | 55.0% | |
| CTCTTCTCGGGGTACAAGCT+GGG | - | chr1_1:60993121-60993140 | Msa0033460:intron | 55.0% | |
| CATCCGGATGACACGAAGGA+AGG | + | chr1_1:60993313-60993332 | None:intergenic | 55.0% | |
| AGGAAGCCCTTGCTTTGCGT+CGG | - | chr1_1:60993408-60993427 | Msa0033460:intron | 55.0% | |
| !! | AAAGAGTGCTGGGCGTAAGG+GGG | + | chr1_1:60994804-60994823 | None:intergenic | 55.0% |
| !! | CCCAGCACTCTTTTTGGGCT+TGG | - | chr1_1:60994811-60994830 | Msa0033460:CDS | 55.0% |
| !!! | CTCTTTTTGGGCTTGGTGCG+TGG | - | chr1_1:60994818-60994837 | Msa0033460:CDS | 55.0% |
| !! | TTTGGGCTTGGTGCGTGGAT+AGG | - | chr1_1:60994823-60994842 | Msa0033460:CDS | 55.0% |
| TTGGTGCGTGGATAGGTAGG+TGG | - | chr1_1:60994830-60994849 | Msa0033460:CDS | 55.0% | |
| AAAGGGGAAACCCTTGGAGC+AGG | - | chr1_1:60995141-60995160 | Msa0033460:intron | 55.0% | |
| !! | TGGCGAGACCTCTAGGACAT+TGG | + | chr1_1:60995917-60995936 | None:intergenic | 55.0% |
| GAGTGGATATTGAACCGGCG+TGG | + | chr1_1:60995937-60995956 | None:intergenic | 55.0% | |
| !! | CGCCGGTTCAATATCCACTC+CGG | - | chr1_1:60995937-60995956 | Msa0033460:intron | 55.0% |
| TCCTGAGAAGCCTGCAGACA+GGG | - | chr1_1:60996212-60996231 | Msa0033460:intron | 55.0% | |
| GAGACCTGCATCAGCCTGGA+CGG | + | chr1_1:60992858-60992877 | None:intergenic | 60.0% | |
| GCTCTTCTCGGGGTACAAGC+TGG | - | chr1_1:60993120-60993139 | Msa0033460:intron | 60.0% | |
| ! | GGGCGTAAGGGGGGTGTATT+AGG | + | chr1_1:60994794-60994813 | None:intergenic | 60.0% |
| !! | AAGAGTGCTGGGCGTAAGGG+GGG | + | chr1_1:60994803-60994822 | None:intergenic | 60.0% |
| !! | GGCTTGGTGCGTGGATAGGT+AGG | - | chr1_1:60994827-60994846 | Msa0033460:CDS | 60.0% |
| CAGTCTGGTTGAACCCCGGT+TGG | - | chr1_1:60995798-60995817 | Msa0033460:intron | 60.0% | |
| CTCCTGAGAAGCCTGCAGAC+AGG | - | chr1_1:60996211-60996230 | Msa0033460:intron | 60.0% | |
| AAGCCTGCAGACAGGGCCAT+GGG | - | chr1_1:60996219-60996238 | Msa0033460:intron | 60.0% | |
| AAACCCATGGCCCTGTCTGC+AGG | + | chr1_1:60996225-60996244 | None:intergenic | 60.0% | |
| TGCTCCGTCCAGGCTGATGC+AGG | - | chr1_1:60992851-60992870 | Msa0033460:intron | 65.0% | |
| CTCGGGGTACAAGCTGGGAG+AGG | - | chr1_1:60993126-60993145 | Msa0033460:intron | 65.0% | |
| TCCTAGAGGTCTCGCCACGC+CGG | - | chr1_1:60995920-60995939 | Msa0033460:intron | 65.0% | |
| GCCCTGTCTGCAGGCTTCTC+AGG | + | chr1_1:60996216-60996235 | None:intergenic | 65.0% | |
| GAAGCCTGCAGACAGGGCCA+TGG | - | chr1_1:60996218-60996237 | Msa0033460:intron | 65.0% | |
| ACCGGCGTGGCGAGACCTCT+AGG | + | chr1_1:60995924-60995943 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60991830 | 60996511 | 60991830 | ID=Msa0033460;Name=Msa0033460 |
| chr1_1 | mRNA | 60991830 | 60996511 | 60991830 | ID=Msa0033460-mRNA-1;Parent=Msa0033460;Name=Msa0033460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=103|1|1|1|1|1|7|13|362 |
| chr1_1 | exon | 60991830 | 60991977 | 60991830 | ID=Msa0033460-mRNA-1:exon:19163;Parent=Msa0033460-mRNA-1 |
| chr1_1 | exon | 60992063 | 60992256 | 60992063 | ID=Msa0033460-mRNA-1:exon:19162;Parent=Msa0033460-mRNA-1 |
| chr1_1 | exon | 60994475 | 60994642 | 60994475 | ID=Msa0033460-mRNA-1:exon:19161;Parent=Msa0033460-mRNA-1 |
| chr1_1 | exon | 60994805 | 60995035 | 60994805 | ID=Msa0033460-mRNA-1:exon:19160;Parent=Msa0033460-mRNA-1 |
| chr1_1 | exon | 60995149 | 60995236 | 60995149 | ID=Msa0033460-mRNA-1:exon:19159;Parent=Msa0033460-mRNA-1 |
| chr1_1 | exon | 60995317 | 60995478 | 60995317 | ID=Msa0033460-mRNA-1:exon:19158;Parent=Msa0033460-mRNA-1 |
| chr1_1 | exon | 60996298 | 60996511 | 60996298 | ID=Msa0033460-mRNA-1:exon:19157;Parent=Msa0033460-mRNA-1 |
| chr1_1 | five_prime_UTR | 60996409 | 60996511 | 60996409 | ID=Msa0033460-mRNA-1:five_prime_utr;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60996298 | 60996408 | 60996298 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60995317 | 60995478 | 60995317 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60995149 | 60995236 | 60995149 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60994805 | 60995035 | 60994805 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60994475 | 60994642 | 60994475 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60992063 | 60992256 | 60992063 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | CDS | 60991843 | 60991977 | 60991843 | ID=Msa0033460-mRNA-1:cds;Parent=Msa0033460-mRNA-1 |
| chr1_1 | three_prime_UTR | 60991830 | 60991842 | 60991830 | ID=Msa0033460-mRNA-1:three_prime_utr;Parent=Msa0033460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
