Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122580 | XP_013468327.1 | 97.167 | 353 | 10 | 0 | 1 | 353 | 1 | 353 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122580 | sp|Q9C895|BRE1B_ARATH | 46.272 | 389 | 184 | 4 | 1 | 367 | 1 | 386 | 1.82e-99 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122580 | A0A072VK57 | 97.167 | 353 | 10 | 0 | 1 | 353 | 1 | 353 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0122580 | 0.825863 | 3.715851e-54 | -8.615850e-47 |
| Msa0011250 | Msa0122580 | 0.814324 | 1.632490e-51 | -8.615850e-47 |
| Msa0028550 | Msa0122580 | 0.813809 | 2.121445e-51 | -8.615850e-47 |
| Msa0031180 | Msa0122580 | 0.813710 | 2.229807e-51 | -8.615850e-47 |
| Msa0033460 | Msa0122580 | 0.804926 | 1.708725e-49 | -8.615850e-47 |
| Msa0036140 | Msa0122580 | 0.800287 | 1.547008e-48 | -8.615850e-47 |
| Msa0036920 | Msa0122580 | 0.812502 | 4.105507e-51 | -8.615850e-47 |
| Msa0058600 | Msa0122580 | 0.820370 | 7.108577e-53 | -8.615850e-47 |
| Msa0064110 | Msa0122580 | 0.804835 | 1.785152e-49 | -8.615850e-47 |
| Msa0076220 | Msa0122580 | 0.807868 | 4.095519e-50 | -8.615850e-47 |
| Msa0078060 | Msa0122580 | 0.872810 | 2.388557e-67 | -8.615850e-47 |
| Msa0078480 | Msa0122580 | 0.810433 | 1.155430e-50 | -8.615850e-47 |
| Msa0079400 | Msa0122580 | 0.813610 | 2.346628e-51 | -8.615850e-47 |
| Msa0105070 | Msa0122580 | 0.821875 | 3.198932e-53 | -8.615850e-47 |
| Msa0109900 | Msa0122580 | 0.801970 | 7.002220e-49 | -8.615850e-47 |
| Msa0117710 | Msa0122580 | 0.813332 | 2.699984e-51 | -8.615850e-47 |
| Msa0122580 | Msa0122590 | 0.837237 | 5.852779e-57 | -8.615850e-47 |
| Msa0122580 | Msa0123300 | 0.823517 | 1.327334e-53 | -8.615850e-47 |
| Msa0122580 | Msa0128180 | 0.803268 | 3.780297e-49 | -8.615850e-47 |
| Msa0122580 | Msa0133980 | -0.801447 | 8.966336e-49 | -8.615850e-47 |
| Msa0122580 | Msa0165210 | 0.801458 | 8.918514e-49 | -8.615850e-47 |
| Msa0122580 | Msa0166870 | 0.838788 | 2.336035e-57 | -8.615850e-47 |
| Msa0122580 | Msa0189110 | 0.818646 | 1.758877e-52 | -8.615850e-47 |
| Msa0122580 | Msa0200560 | 0.807094 | 5.979247e-50 | -8.615850e-47 |
| Msa0122580 | Msa0205510 | 0.810534 | 1.098743e-50 | -8.615850e-47 |
| Msa0122580 | Msa0206010 | 0.841228 | 5.397450e-58 | -8.615850e-47 |
| Msa0122580 | Msa0210450 | 0.804951 | 1.688186e-49 | -8.615850e-47 |
| Msa0122580 | Msa0212990 | 0.826511 | 2.606436e-54 | -8.615850e-47 |
| Msa0122580 | Msa0223010 | 0.811570 | 6.553973e-51 | -8.615850e-47 |
| Msa0122580 | Msa0223410 | -0.804289 | 2.320386e-49 | -8.615850e-47 |
| Msa0122580 | Msa0223910 | 0.834550 | 2.809179e-56 | -8.615850e-47 |
| Msa0122580 | Msa0231240 | 0.823779 | 1.152538e-53 | -8.615850e-47 |
| Msa0122580 | Msa0233300 | 0.832861 | 7.422929e-56 | -8.615850e-47 |
| Msa0122580 | Msa0234440 | 0.832976 | 6.951859e-56 | -8.615850e-47 |
| Msa0122580 | Msa0237310 | 0.846032 | 2.801882e-59 | -8.615850e-47 |
| Msa0122580 | Msa0242430 | 0.803273 | 3.771229e-49 | -8.615850e-47 |
| Msa0122580 | Msa0243250 | 0.810041 | 1.403490e-50 | -8.615850e-47 |
| Msa0122580 | Msa0245940 | 0.840680 | 7.513010e-58 | -8.615850e-47 |
| Msa0122580 | Msa0249100 | 0.856801 | 2.515708e-62 | -8.615850e-47 |
| Msa0122580 | Msa0253200 | 0.814598 | 1.420329e-51 | -8.615850e-47 |
| Msa0122580 | Msa0255550 | 0.814588 | 1.427641e-51 | -8.615850e-47 |
| Msa0122580 | Msa0260780 | 0.812141 | 4.922113e-51 | -8.615850e-47 |
| Msa0122580 | Msa0265150 | 0.809046 | 2.296281e-50 | -8.615850e-47 |
| Msa0122580 | Msa0272730 | 0.822520 | 2.267581e-53 | -8.615850e-47 |
| Msa0122580 | Msa0274730 | 0.844386 | 7.808180e-59 | -8.615850e-47 |
| Msa0122580 | Msa0281640 | 0.813041 | 3.128621e-51 | -8.615850e-47 |
| Msa0122580 | Msa0284520 | 0.846622 | 1.934773e-59 | -8.615850e-47 |
| Msa0122580 | Msa0285450 | 0.805261 | 1.453774e-49 | -8.615850e-47 |
| Msa0122580 | Msa0287410 | 0.820336 | 7.238784e-53 | -8.615850e-47 |
| Msa0122580 | Msa0290870 | 0.800647 | 1.306781e-48 | -8.615850e-47 |
| Msa0122580 | Msa0292030 | 0.814858 | 1.243868e-51 | -8.615850e-47 |
| Msa0122580 | Msa0294590 | 0.811620 | 6.392895e-51 | -8.615850e-47 |
| Msa0122580 | Msa0315530 | 0.837862 | 4.046581e-57 | -8.615850e-47 |
| Msa0122580 | Msa0319170 | 0.801482 | 8.818811e-49 | -8.615850e-47 |
| Msa0122580 | Msa0320800 | 0.824861 | 6.416721e-54 | -8.615850e-47 |
| Msa0122580 | Msa0323370 | 0.819293 | 1.252893e-52 | -8.615850e-47 |
| Msa0122580 | Msa0326110 | 0.835767 | 1.385033e-56 | -8.615850e-47 |
| Msa0122580 | Msa0330340 | 0.832396 | 9.680213e-56 | -8.615850e-47 |
| Msa0122580 | Msa0339620 | 0.818768 | 1.649981e-52 | -8.615850e-47 |
| Msa0122580 | Msa0344980 | 0.811401 | 7.132209e-51 | -8.615850e-47 |
| Msa0122580 | Msa0351810 | 0.802865 | 4.580455e-49 | -8.615850e-47 |
| Msa0122580 | Msa0361780 | 0.812555 | 3.997368e-51 | -8.615850e-47 |
| Msa0122580 | Msa0371730 | 0.804513 | 2.083692e-49 | -8.615850e-47 |
| Msa0122580 | Msa0373450 | 0.842142 | 3.097333e-58 | -8.615850e-47 |
| Msa0122580 | Msa0376590 | 0.802846 | 4.622544e-49 | -8.615850e-47 |
| Msa0122580 | Msa0388960 | 0.819863 | 9.286591e-53 | -8.615850e-47 |
| Msa0122580 | Msa0411390 | 0.808047 | 3.751491e-50 | -8.615850e-47 |
| Msa0122580 | Msa0433410 | -0.809108 | 2.226758e-50 | -8.615850e-47 |
| Msa0122580 | Msa0439970 | 0.842505 | 2.482442e-58 | -8.615850e-47 |
| Msa0122580 | Msa0455760 | 0.811412 | 7.091141e-51 | -8.615850e-47 |
| Msa0122580 | Msa0466120 | 0.800470 | 1.419831e-48 | -8.615850e-47 |
| Msa0122580 | Msa0468550 | 0.811822 | 5.777234e-51 | -8.615850e-47 |
| Msa0122580 | Msa0469940 | -0.805551 | 1.263703e-49 | -8.615850e-47 |
| Msa0122580 | Msa0477130 | -0.813763 | 2.171490e-51 | -8.615850e-47 |
| Msa0122580 | Msa0479340 | 0.804877 | 1.748902e-49 | -8.615850e-47 |
| Msa0122580 | Msa0484780 | 0.820889 | 5.402479e-53 | -8.615850e-47 |
| Msa0122580 | Msa0489100 | 0.805183 | 1.509359e-49 | -8.615850e-47 |
| Msa0122580 | Msa0520700 | 0.809245 | 2.081713e-50 | -8.615850e-47 |
| Msa0122580 | Msa0532350 | 0.803975 | 2.696432e-49 | -8.615850e-47 |
| Msa0122580 | Msa0565450 | 0.802015 | 6.856349e-49 | -8.615850e-47 |
| Msa0122580 | Msa0571130 | 0.805653 | 1.203286e-49 | -8.615850e-47 |
| Msa0122580 | Msa0572420 | 0.812840 | 3.462398e-51 | -8.615850e-47 |
| Msa0122580 | Msa0579100 | 0.803846 | 2.869262e-49 | -8.615850e-47 |
| Msa0122580 | Msa0579130 | 0.829421 | 5.197799e-55 | -8.615850e-47 |
| Msa0122580 | Msa0579200 | 0.839071 | 1.973030e-57 | -8.615850e-47 |
| Msa0122580 | Msa0582180 | 0.822302 | 2.546987e-53 | -8.615850e-47 |
| Msa0122580 | Msa0610670 | 0.834354 | 3.145999e-56 | -8.615850e-47 |
| Msa0122580 | Msa0629450 | 0.841413 | 4.823407e-58 | -8.615850e-47 |
| Msa0122580 | Msa0633060 | 0.811846 | 5.706331e-51 | -8.615850e-47 |
| Msa0122580 | Msa0651270 | 0.816330 | 5.847208e-52 | -8.615850e-47 |
| Msa0122580 | Msa0661320 | 0.808122 | 3.616615e-50 | -8.615850e-47 |
| Msa0122580 | Msa0663250 | 0.804880 | 1.747161e-49 | -8.615850e-47 |
| Msa0122580 | Msa0681250 | 0.804430 | 2.168558e-49 | -8.615850e-47 |
| Msa0122580 | Msa0682550 | 0.805960 | 1.037283e-49 | -8.615850e-47 |
| Msa0122580 | Msa0685750 | 0.854221 | 1.421811e-61 | -8.615850e-47 |
| Msa0122580 | Msa0688070 | 0.844679 | 6.512541e-59 | -8.615850e-47 |
| Msa0122580 | Msa0715470 | 0.800147 | 1.651703e-48 | -8.615850e-47 |
| Msa0122580 | Msa0722070 | 0.803442 | 3.479554e-49 | -8.615850e-47 |
| Msa0122580 | Msa0731940 | 0.800117 | 1.675438e-48 | -8.615850e-47 |
| Msa0122580 | Msa0753720 | 0.829568 | 4.785813e-55 | -8.615850e-47 |
| Msa0122580 | Msa0760130 | 0.830805 | 2.388471e-55 | -8.615850e-47 |
| Msa0122580 | Msa0762360 | 0.816241 | 6.120125e-52 | -8.615850e-47 |
| Msa0122580 | Msa0763400 | 0.823418 | 1.399905e-53 | -8.615850e-47 |
| Msa0122580 | Msa0763890 | 0.836194 | 1.079697e-56 | -8.615850e-47 |
| Msa0122580 | Msa0763920 | 0.821428 | 4.058437e-53 | -8.615850e-47 |
| Msa0122580 | Msa0766630 | 0.816882 | 4.396566e-52 | -8.615850e-47 |
| Msa0122580 | Msa0779330 | 0.806839 | 6.770095e-50 | -8.615850e-47 |
| Msa0122580 | Msa0808100 | 0.803676 | 3.111298e-49 | -8.615850e-47 |
| Msa0122580 | Msa0816710 | 0.800915 | 1.151854e-48 | -8.615850e-47 |
| Msa0122580 | Msa0828850 | 0.810552 | 1.089369e-50 | -8.615850e-47 |
| Msa0122580 | Msa0832090 | 0.805193 | 1.502270e-49 | -8.615850e-47 |
| Msa0122580 | Msa0861540 | 0.802344 | 5.866962e-49 | -8.615850e-47 |
| Msa0122580 | Msa0868160 | 0.809832 | 1.557218e-50 | -8.615850e-47 |
| Msa0122580 | Msa0896770 | 0.807261 | 5.511927e-50 | -8.615850e-47 |
| Msa0122580 | Msa0908050 | 0.806505 | 7.963937e-50 | -8.615850e-47 |
| Msa0122580 | Msa0925270 | 0.807679 | 4.492210e-50 | -8.615850e-47 |
| Msa0122580 | Msa0933100 | 0.840106 | 1.061564e-57 | -8.615850e-47 |
| Msa0122580 | Msa0933450 | 0.808805 | 2.585299e-50 | -8.615850e-47 |
| Msa0122580 | Msa0969520 | 0.809261 | 2.065364e-50 | -8.615850e-47 |
| Msa0122580 | Msa1000880 | 0.808715 | 2.702714e-50 | -8.615850e-47 |
| Msa0122580 | Msa1030970 | 0.801386 | 9.228012e-49 | -8.615850e-47 |
| Msa0122580 | Msa1032850 | 0.816380 | 5.696655e-52 | -8.615850e-47 |
| Msa0122580 | Msa1041670 | 0.804021 | 2.637880e-49 | -8.615850e-47 |
| Msa0122580 | Msa1065610 | 0.804944 | 1.693464e-49 | -8.615850e-47 |
| Msa0122580 | Msa1081330 | 0.838949 | 2.121330e-57 | -8.615850e-47 |
| Msa0122580 | Msa1081590 | 0.808374 | 3.195683e-50 | -8.615850e-47 |
| Msa0122580 | Msa1082500 | 0.823339 | 1.460612e-53 | -8.615850e-47 |
| Msa0122580 | Msa1087980 | 0.801805 | 7.570502e-49 | -8.615850e-47 |
| Msa0122580 | Msa1098400 | 0.810057 | 1.392648e-50 | -8.615850e-47 |
| Msa0122580 | Msa1137570 | 0.805796 | 1.122864e-49 | -8.615850e-47 |
| Msa0122580 | Msa1158310 | 0.804069 | 2.578185e-49 | -8.615850e-47 |
| Msa0122580 | Msa1162550 | -0.802950 | 4.398521e-49 | -8.615850e-47 |
| Msa0122580 | Msa1166560 | 0.803524 | 3.346212e-49 | -8.615850e-47 |
| Msa0122580 | Msa1193290 | 0.812280 | 4.589670e-51 | -8.615850e-47 |
| Msa0122580 | Msa1220150 | 0.816713 | 4.797441e-52 | -8.615850e-47 |
| Msa0122580 | Msa1224480 | 0.845386 | 4.195385e-59 | -8.615850e-47 |
| Msa0122580 | Msa1224580 | -0.805999 | 1.017944e-49 | -8.615850e-47 |
| Msa0122580 | Msa1239720 | 0.824648 | 7.202620e-54 | -8.615850e-47 |
| Msa0122580 | Msa1267610 | 0.818243 | 2.169825e-52 | -8.615850e-47 |
| Msa0122580 | Msa1276440 | 0.802939 | 4.422325e-49 | -8.615850e-47 |
| Msa0122580 | Msa1284680 | 0.803649 | 3.151191e-49 | -8.615850e-47 |
| Msa0122580 | Msa1305350 | 0.803971 | 2.702272e-49 | -8.615850e-47 |
| Msa0122580 | Msa1306850 | 0.811867 | 5.648310e-51 | -8.615850e-47 |
| Msa0122580 | Msa1313150 | 0.804516 | 2.080957e-49 | -8.615850e-47 |
| Msa0122580 | Msa1331000 | 0.805354 | 1.390286e-49 | -8.615850e-47 |
| Msa0122580 | Msa1333730 | 0.861262 | 1.160828e-63 | -8.615850e-47 |
| Msa0122580 | Msa1341950 | 0.801315 | 9.543326e-49 | -8.615850e-47 |
| Msa0122580 | Msa1346080 | 0.800713 | 1.266524e-48 | -8.615850e-47 |
| Msa0122580 | Msa1353470 | 0.811465 | 6.908569e-51 | -8.615850e-47 |
| Msa0122580 | Msa1360060 | 0.806045 | 9.952238e-50 | -8.615850e-47 |
| Msa0122580 | Msa1372760 | 0.805140 | 1.541028e-49 | -8.615850e-47 |
| Msa0122580 | Msa1378940 | 0.803082 | 4.130189e-49 | -8.615850e-47 |
| Msa0122580 | Msa1390350 | 0.808147 | 3.572214e-50 | -8.615850e-47 |
| Msa0122580 | Msa1393040 | 0.806637 | 7.469588e-50 | -8.615850e-47 |
| Msa0122580 | Msa1401460 | 0.828692 | 7.804422e-55 | -8.615850e-47 |
| Msa0122580 | Msa1403480 | 0.809375 | 1.952399e-50 | -8.615850e-47 |
| Msa0122580 | Msa1411020 | 0.802323 | 5.925059e-49 | -8.615850e-47 |
| Msa0122580 | Msa1423880 | 0.812555 | 3.997633e-51 | -8.615850e-47 |
| Msa0122580 | Msa1424680 | 0.809063 | 2.276800e-50 | -8.615850e-47 |
| Msa0122580 | Msa1427230 | 0.808520 | 2.974564e-50 | -8.615850e-47 |
| Msa0122580 | Msa1439320 | 0.804584 | 2.014330e-49 | -8.615850e-47 |
| Msa0122580 | Msa1443060 | 0.807596 | 4.678563e-50 | -8.615850e-47 |
| Msa0122580 | Msa1448640 | 0.802385 | 5.754168e-49 | -8.615850e-47 |
| Msa0122580 | Msa1449520 | 0.802260 | 6.102783e-49 | -8.615850e-47 |
| Msa0122580 | Msa1451620 | -0.821824 | 3.287042e-53 | -8.615850e-47 |
| Msa0122580 | Msa1453560 | 0.805384 | 1.370154e-49 | -8.615850e-47 |
| Msa0122580 | Msa1460830 | 0.815071 | 1.115631e-51 | -8.615850e-47 |
| Msa0122580 | Msa1462930 | 0.810607 | 1.059599e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122580 | MtrunA17_Chr1g0182391 | 97.167 | 353 | 10 | 0 | 1 | 353 | 1 | 353 | 0.0 | 701 |
| Msa0122580 | MtrunA17_Chr5g0438781 | 86.104 | 367 | 51 | 0 | 1 | 367 | 1 | 367 | 0.0 | 603 |
| Msa0122580 | MtrunA17_Chr8g0365251 | 82.143 | 84 | 15 | 0 | 252 | 335 | 2 | 85 | 2.62e-39 | 135 |
| Msa0122580 | MtrunA17_Chr5g0427091 | 84.722 | 72 | 11 | 0 | 275 | 346 | 1 | 72 | 1.65e-33 | 121 |
| Msa0122580 | MtrunA17_Chr7g0232251 | 27.945 | 365 | 241 | 9 | 18 | 374 | 19 | 369 | 6.24e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122580 | AT1G55250.5 | 49.457 | 368 | 184 | 2 | 1 | 367 | 1 | 367 | 9.83e-109 | 338 |
| Msa0122580 | AT1G55250.3 | 49.457 | 368 | 184 | 2 | 1 | 367 | 1 | 367 | 1.11e-108 | 339 |
| Msa0122580 | AT1G55250.1 | 46.272 | 389 | 184 | 4 | 1 | 367 | 1 | 386 | 1.85e-100 | 317 |
| Msa0122580 | AT2G44950.2 | 23.733 | 375 | 264 | 8 | 8 | 372 | 6 | 368 | 2.64e-18 | 87.0 |
| Msa0122580 | AT2G44950.1 | 23.733 | 375 | 264 | 9 | 8 | 372 | 6 | 368 | 3.02e-18 | 87.0 |
Find 85 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTCAATAGAATCTTTC+TGG | 0.156125 | 1_3:+49332253 | None:intergenic |
| GCTGAACAAGCTGCTGATTT+TGG | 0.182297 | 1_3:+49332734 | None:intergenic |
| ATTGACAAACCTGAAGTTCT+TGG | 0.253258 | 1_3:+49329178 | None:intergenic |
| TTTCTAGTTGGTTGATGATA+TGG | 0.255629 | 1_3:-49332522 | Msa0122580:intron |
| CTTTGCGTCGGTTATCTACT+AGG | 0.292056 | 1_3:-49332188 | Msa0122580:CDS |
| GGAGAATGGTTGGTTGAATT+TGG | 0.292304 | 1_3:+49333610 | None:intergenic |
| TCTGACATTAAACGCCTTAC+AGG | 0.299793 | 1_3:-49331762 | Msa0122580:intron |
| CAAAGATTCTTTGGAAACTT+TGG | 0.300310 | 1_3:-49332471 | Msa0122580:CDS |
| GATTGATGATATGACGAAAA+AGG | 0.308345 | 1_3:-49331886 | Msa0122580:CDS |
| TTCTGCGAATTTGAAGAAAA+AGG | 0.321727 | 1_3:+49333713 | None:intergenic |
| GCCCTGTCTGCAGGCTTCTC+AGG | 0.332687 | 1_3:+49329400 | None:intergenic |
| AACGCAGAAACACGCTTTAC+AGG | 0.334237 | 1_3:-49332704 | Msa0122580:CDS |
| TGGGAGAGGCAAAGATTCTT+TGG | 0.337753 | 1_3:-49332480 | Msa0122580:CDS |
| TATCATCAATCTTAGACATT+TGG | 0.338646 | 1_3:+49331898 | None:intergenic |
| AAAGAAATTCCAAGAACTTC+AGG | 0.368208 | 1_3:-49329187 | Msa0122580:intron |
| CTTCTTCCTAATGCTTCGTT+TGG | 0.373933 | 1_3:-49333738 | Msa0122580:five_prime_UTR |
| AGATGAGGCTTCTTGTTGTT+GGG | 0.375831 | 1_3:+49333661 | None:intergenic |
| TTCCCTTCCTTCGTGTCATC+CGG | 0.390660 | 1_3:-49332301 | Msa0122580:CDS |
| GTTGATGATATGGCTCTTCT+CGG | 0.394275 | 1_3:-49332512 | Msa0122580:CDS |
| AAACCCATGGCCCTGTCTGC+AGG | 0.401224 | 1_3:+49329391 | None:intergenic |
| ATCCAGAAAGATTCTATTGA+GGG | 0.419466 | 1_3:-49332255 | Msa0122580:CDS |
| GTTTGTAGGCAAGGTGGTTG+TGG | 0.425933 | 1_3:-49328309 | Msa0122580:intron |
| AAGATGAGGCTTCTTGTTGT+TGG | 0.429347 | 1_3:+49333660 | None:intergenic |
| AAGGAACCAAACGAAGCATT+AGG | 0.432172 | 1_3:+49333732 | None:intergenic |
| GGTGAAACGCGGGAAGAAAC+AGG | 0.432248 | 1_3:+49333631 | None:intergenic |
| TGCTCCTTCCAGGCTGATGC+AGG | 0.447363 | 1_3:-49332769 | Msa0122580:intron |
| GCTCTTCTCGGGATACAAGC+TGG | 0.449889 | 1_3:-49332500 | Msa0122580:CDS |
| TCCAATGCTGATTCAGTGAA+TGG | 0.450902 | 1_3:-49329433 | Msa0122580:CDS |
| TCAAATTCGCAGAACCCAAA+TGG | 0.455534 | 1_3:-49333704 | Msa0122580:exon |
| AATGCAAAAGGATGCAGCTA+TGG | 0.467843 | 1_3:-49329467 | Msa0122580:CDS |
| TCCTGAGAAGCCTGCAGACA+GGG | 0.471244 | 1_3:-49329401 | Msa0122580:CDS |
| TCCATTCACTGAATCAGCAT+TGG | 0.484524 | 1_3:+49329432 | None:intergenic |
| CTACATAGAAGTAGATCATC+CGG | 0.493035 | 1_3:+49332282 | None:intergenic |
| AAGAATTGAGGATATAGGTC+AGG | 0.494365 | 1_3:-49332121 | Msa0122580:CDS |
| AAACATTTCAAATACCTGTA+AGG | 0.500187 | 1_3:+49331748 | None:intergenic |
| ATGGAAAGAATTGAGGATAT+AGG | 0.501506 | 1_3:-49332126 | Msa0122580:CDS |
| AATCCAGAAAGATTCTATTG+AGG | 0.504272 | 1_3:-49332256 | Msa0122580:CDS |
| CTCTTCTCGGGATACAAGCT+GGG | 0.505460 | 1_3:-49332499 | Msa0122580:CDS |
| CTCCTGAGAAGCCTGCAGAC+AGG | 0.509679 | 1_3:-49329402 | Msa0122580:CDS |
| AATCACTTCACGAAAATTGT+CGG | 0.513242 | 1_3:+49331860 | None:intergenic |
| TTCTGAGCTCCAAGATGCAC+GGG | 0.513678 | 1_3:-49329229 | Msa0122580:CDS |
| ATTCACTGAATCAGCATTGG+AGG | 0.514943 | 1_3:+49329435 | None:intergenic |
| ATTGTGAAACTGTGTTGAGT+TGG | 0.522872 | 1_3:+49333768 | None:intergenic |
| CATATGTATTATACCTTCTG+TGG | 0.523609 | 1_3:+49332080 | None:intergenic |
| TTGATGATATGGCTCTTCTC+GGG | 0.526932 | 1_3:-49332511 | Msa0122580:CDS |
| CTCAATTGAATGCTTCAACT+CGG | 0.529213 | 1_3:+49329366 | None:intergenic |
| CACGGAGATTTATCCACAGA+AGG | 0.529280 | 1_3:-49332093 | Msa0122580:intron |
| AGTCAGTCTGAAAATGCAAA+AGG | 0.532068 | 1_3:-49329479 | Msa0122580:CDS |
| TTTGCGTCGGTTATCTACTA+GGG | 0.536181 | 1_3:-49332187 | Msa0122580:CDS |
| AATCAACCAACACTGGGATC+AGG | 0.540393 | 1_3:-49332617 | Msa0122580:intron |
| TAATTGCAATCAACCAACAC+TGG | 0.541368 | 1_3:-49332624 | Msa0122580:CDS |
| TTTGCTGTTAGGAGAATGGT+TGG | 0.546271 | 1_3:+49333600 | None:intergenic |
| GCATTCAATTGAGGAAGCCA+AGG | 0.546475 | 1_3:-49329356 | Msa0122580:intron |
| AGGAGAGCTTGACGAGATTG+TGG | 0.546788 | 1_3:-49329530 | Msa0122580:CDS |
| ATGCAAAAGGATGCAGCTAT+GGG | 0.546927 | 1_3:-49329466 | Msa0122580:CDS |
| TAGATAACCGACGCAAAGCA+AGG | 0.550352 | 1_3:+49332193 | None:intergenic |
| TTGTGGCTTTGTGATGCTGA+TGG | 0.552570 | 1_3:-49328292 | Msa0122580:CDS |
| GAAACAGGAGTGAGAAGATG+AGG | 0.556873 | 1_3:+49333646 | None:intergenic |
| AAGCCTGCAGACAGGGCCAT+GGG | 0.559995 | 1_3:-49329394 | Msa0122580:CDS |
| CTCGGGATACAAGCTGGGAG+AGG | 0.560356 | 1_3:-49332494 | Msa0122580:CDS |
| GAAGCCTGCAGACAGGGCCA+TGG | 0.560728 | 1_3:-49329395 | Msa0122580:CDS |
| AGGAAGCCCTTGCTTTGCGT+CGG | 0.560789 | 1_3:-49332200 | Msa0122580:CDS |
| CGAGTTGAAGCATTCAATTG+AGG | 0.561024 | 1_3:-49329365 | Msa0122580:CDS |
| TGATCAGATGGAAAGAATTG+AGG | 0.561074 | 1_3:-49332133 | Msa0122580:CDS |
| CATCCGGATGACACGAAGGA+AGG | 0.572324 | 1_3:+49332298 | None:intergenic |
| TGAGATTACTAATTATGTTG+AGG | 0.578428 | 1_3:-49332220 | Msa0122580:CDS |
| TTTCTGAGCTCCAAGATGCA+CGG | 0.582913 | 1_3:-49329230 | Msa0122580:CDS |
| AGATACCGTTGATGATCAGA+TGG | 0.584592 | 1_3:-49332145 | Msa0122580:CDS |
| GAATAACCTGATCCCAGTGT+TGG | 0.585715 | 1_3:+49332611 | None:intergenic |
| ATCCGGATGACACGAAGGAA+GGG | 0.598223 | 1_3:+49332299 | None:intergenic |
| TCTTTCCATCTGATCATCAA+CGG | 0.601325 | 1_3:+49332140 | None:intergenic |
| AGATAACCGACGCAAAGCAA+GGG | 0.606298 | 1_3:+49332194 | None:intergenic |
| AAACACAAGGAGTATACTGT+TGG | 0.609461 | 1_3:-49331822 | Msa0122580:CDS |
| TCTTGTTGTTGGGTTCGTCG+TGG | 0.614659 | 1_3:+49333671 | None:intergenic |
| GTTGAGTTGGAAAATGAAGA+AGG | 0.619761 | 1_3:+49333781 | None:intergenic |
| AATTGCAATCAACCAACACT+GGG | 0.631357 | 1_3:-49332623 | Msa0122580:CDS |
| AAGTACCTTGTGGATTATCG+AGG | 0.633911 | 1_3:+49332444 | None:intergenic |
| CTTCAACTCGGACAAACCCA+TGG | 0.641274 | 1_3:+49329378 | None:intergenic |
| GGTTGAATTTGGTGAAACGC+GGG | 0.644185 | 1_3:+49333621 | None:intergenic |
| TGCATAGTTTGTAGGCAAGG+TGG | 0.656620 | 1_3:-49328315 | Msa0122580:intron |
| AGATCATCCGGATGACACGA+AGG | 0.657010 | 1_3:+49332294 | None:intergenic |
| TACTCTCCATGCAAAACACA+AGG | 0.662712 | 1_3:-49331835 | Msa0122580:CDS |
| GTGAAAGACAAAGACGACAA+AGG | 0.666475 | 1_3:-49328270 | Msa0122580:CDS |
| TGGTTGAATTTGGTGAAACG+CGG | 0.705123 | 1_3:+49333620 | None:intergenic |
| GATTACCTCGATAATCCACA+AGG | 0.721386 | 1_3:-49332449 | Msa0122580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTAATAATTAA+AGG | - | chr1_3:49332495-49332514 | Msa0122580:CDS | 0.0% |
| !! | AAGAAATATAATTAAACAAA+AGG | + | chr1_3:49330462-49330481 | None:intergenic | 10.0% |
| !!! | AATATTTGTTAAAATATCAT+TGG | - | chr1_3:49330634-49330653 | Msa0122580:intron | 10.0% |
| !! | AAAAGATTATTAAATAGAAT+TGG | + | chr1_3:49330661-49330680 | None:intergenic | 10.0% |
| !!! | ATAAAATTTAATTTCGAAAA+AGG | - | chr1_3:49333301-49333320 | Msa0122580:intron | 10.0% |
| !! | TTCTTAGTTATAATTATAAG+CGG | - | chr1_3:49330477-49330496 | Msa0122580:intron | 15.0% |
| !!! | TTCTATTTAATAATCTTTTG+AGG | - | chr1_3:49330662-49330681 | Msa0122580:intron | 15.0% |
| !!! | TCTATTTAATAATCTTTTGA+GGG | - | chr1_3:49330663-49330682 | Msa0122580:intron | 15.0% |
| !! | TGATTAATGTTAGAATAATA+TGG | - | chr1_3:49330821-49330840 | Msa0122580:intron | 15.0% |
| !!! | TATCAAGTAAATATGAATTT+TGG | - | chr1_3:49331011-49331030 | Msa0122580:intron | 15.0% |
| !!! | ATCAAGTAAATATGAATTTT+GGG | - | chr1_3:49331012-49331031 | Msa0122580:intron | 15.0% |
| !!! | TGACTTGATTTTTTTTTTTT+TGG | + | chr1_3:49331655-49331674 | None:intergenic | 15.0% |
| !!! | AAATCTAATTTTATGTTTAG+AGG | + | chr1_3:49331770-49331789 | None:intergenic | 15.0% |
| !! | TAATTAAGTAAATTATCAAG+AGG | - | chr1_3:49332094-49332113 | Msa0122580:CDS | 15.0% |
| !!! | GTACTATTAAACATTTTTTT+TGG | + | chr1_3:49333209-49333228 | None:intergenic | 15.0% |
| !! | ATGATAAATTCTTGTGTAAT+TGG | - | chr1_3:49328559-49328578 | Msa0122580:intron | 20.0% |
| !!! | TGTGCTTAATATTTTTTAGA+GGG | - | chr1_3:49329181-49329200 | Msa0122580:intron | 20.0% |
| !! | CATATAAACAAATCATCATT+AGG | + | chr1_3:49329232-49329251 | None:intergenic | 20.0% |
| !!! | GTACTATATTGTTTTTACTA+AGG | - | chr1_3:49330010-49330029 | Msa0122580:intron | 20.0% |
| !! | TCATGTATACATATGATATA+TGG | + | chr1_3:49330056-49330075 | None:intergenic | 20.0% |
| !!! | GAAGTTTAAAATAATTCAGT+AGG | - | chr1_3:49330361-49330380 | Msa0122580:intron | 20.0% |
| !! | ATCTTGATTATCATAAAATG+TGG | - | chr1_3:49330394-49330413 | Msa0122580:intron | 20.0% |
| !! | TCTTGATTATCATAAAATGT+GGG | - | chr1_3:49330395-49330414 | Msa0122580:intron | 20.0% |
| !!! | AAGCAGCATTTTTTATTAAA+AGG | - | chr1_3:49330429-49330448 | Msa0122580:intron | 20.0% |
| !!! | AGCATTTTTTATTAAAAGGA+AGG | - | chr1_3:49330433-49330452 | Msa0122580:intron | 20.0% |
| !!! | ATATTAAAAGGAATGGTTTT+TGG | - | chr1_3:49330579-49330598 | Msa0122580:intron | 20.0% |
| !!! | AAATCTTTTGAGTATCTAAA+TGG | - | chr1_3:49330704-49330723 | Msa0122580:intron | 20.0% |
| !!! | AATCTTTTGAGTATCTAAAT+GGG | - | chr1_3:49330705-49330724 | Msa0122580:intron | 20.0% |
| !! | TCATGAAATATAAGGAATTA+TGG | + | chr1_3:49330910-49330929 | None:intergenic | 20.0% |
| !!! | TCAAGTAAATATGAATTTTG+GGG | - | chr1_3:49331013-49331032 | Msa0122580:intron | 20.0% |
| !! | TTGTATATATCCTAACTATT+GGG | + | chr1_3:49331434-49331453 | None:intergenic | 20.0% |
| !! | TTTGTATATATCCTAACTAT+TGG | + | chr1_3:49331435-49331454 | None:intergenic | 20.0% |
| !! | GATATATACAAATTTCAATG+AGG | - | chr1_3:49331443-49331462 | Msa0122580:intron | 20.0% |
| !! | ATATGTCAGTTAGATAAATA+GGG | - | chr1_3:49331506-49331525 | Msa0122580:intron | 20.0% |
| !! | AATTTGATGTTTGTGTAAAA+GGG | - | chr1_3:49331558-49331577 | Msa0122580:intron | 20.0% |
| !! | CATAAATTAATTACCATGTT+AGG | + | chr1_3:49331827-49331846 | None:intergenic | 20.0% |
| !! | TAAATATTCAGATTAATGCA+AGG | + | chr1_3:49331886-49331905 | None:intergenic | 20.0% |
| !! | TTGCATTAATCTGAATATTT+AGG | - | chr1_3:49331885-49331904 | Msa0122580:CDS | 20.0% |
| !! | AATTGAAACACATTCATTAT+AGG | - | chr1_3:49332929-49332948 | Msa0122580:intron | 20.0% |
| !! | ATTGAAACACATTCATTATA+GGG | - | chr1_3:49332930-49332949 | Msa0122580:intron | 20.0% |
| !!! | AATTTTATATTGGAAAATGC+TGG | - | chr1_3:49333491-49333510 | Msa0122580:intron | 20.0% |
| !!! | AAGTTTACATTTTTGCTGTT+AGG | + | chr1_3:49328459-49328478 | None:intergenic | 25.0% |
| ! | TTGATCATGTTTATATACTG+TGG | - | chr1_3:49328504-49328523 | Msa0122580:intron | 25.0% |
| !! | ATTGGATTTTTATAGCTGAT+TGG | - | chr1_3:49328577-49328596 | Msa0122580:intron | 25.0% |
| !!! | TATGAAACTATGGTTTTGTT+TGG | - | chr1_3:49328671-49328690 | Msa0122580:intron | 25.0% |
| !!! | TTTTTTTTGAGAGATACCTT+AGG | + | chr1_3:49329006-49329025 | None:intergenic | 25.0% |
| ! | TTATGTATGTTAGATTTGTG+TGG | - | chr1_3:49329128-49329147 | Msa0122580:intron | 25.0% |
| !!! | GTGTGCTTAATATTTTTTAG+AGG | - | chr1_3:49329180-49329199 | Msa0122580:intron | 25.0% |
| !!! | GTGCTTAATATTTTTTAGAG+GGG | - | chr1_3:49329182-49329201 | Msa0122580:intron | 25.0% |
| ! | ATTCAAGAATATGACAAAAC+TGG | + | chr1_3:49329474-49329493 | None:intergenic | 25.0% |
| !! | AGTTCTTTTATGCAGTATTA+AGG | - | chr1_3:49329685-49329704 | Msa0122580:intron | 25.0% |
| ! | TGAGATTACTAATTATGTTG+AGG | - | chr1_3:49329825-49329844 | Msa0122580:intron | 25.0% |
| !! | GTTTTTACTAAGGATTGAAT+TGG | - | chr1_3:49330020-49330039 | Msa0122580:intron | 25.0% |
| ! | TATCATCAATCTTAGACATT+TGG | + | chr1_3:49330150-49330169 | None:intergenic | 25.0% |
| ! | AAACATTTCAAATACCTGTA+AGG | + | chr1_3:49330300-49330319 | None:intergenic | 25.0% |
| ! | AAACTTCATAATAACTGAAG+TGG | + | chr1_3:49330348-49330367 | None:intergenic | 25.0% |
| !!! | CATAAAATGTGGGTTTTAAA+TGG | - | chr1_3:49330405-49330424 | Msa0122580:intron | 25.0% |
| ! | ATAAGCGGTAGTATTATATA+TGG | - | chr1_3:49330492-49330511 | Msa0122580:intron | 25.0% |
| !! | AAATCTTTGAAGGATCAAAT+TGG | + | chr1_3:49330533-49330552 | None:intergenic | 25.0% |
| ! | ATGTTCGAAAAAATCTTTGA+AGG | + | chr1_3:49330543-49330562 | None:intergenic | 25.0% |
| ! | TTGACCATGGAAATATTAAA+AGG | - | chr1_3:49330567-49330586 | Msa0122580:intron | 25.0% |
| !! | CATTCCTTTTAATATTTCCA+TGG | + | chr1_3:49330574-49330593 | None:intergenic | 25.0% |
| ! | CATGGAAATATTAAAAGGAA+TGG | - | chr1_3:49330572-49330591 | Msa0122580:intron | 25.0% |
| ! | AACAAATATTACTGCATACA+GGG | + | chr1_3:49330624-49330643 | None:intergenic | 25.0% |
| ! | TAACAAATATTACTGCATAC+AGG | + | chr1_3:49330625-49330644 | None:intergenic | 25.0% |
| !!! | ATCTTTTGAGTATCTAAATG+GGG | - | chr1_3:49330706-49330725 | Msa0122580:intron | 25.0% |
| ! | GTTTACCATAAAGTTATAGT+GGG | - | chr1_3:49330728-49330747 | Msa0122580:intron | 25.0% |
| ! | TTTACCATAAAGTTATAGTG+GGG | - | chr1_3:49330729-49330748 | Msa0122580:intron | 25.0% |
| !! | ATTTTCGTATCTTGAAACAA+AGG | - | chr1_3:49330864-49330883 | Msa0122580:intron | 25.0% |
| ! | GAAATGGATCATGAAATATA+AGG | + | chr1_3:49330918-49330937 | None:intergenic | 25.0% |
| ! | AGTCCAGTTAAAGTATAAAT+AGG | - | chr1_3:49330959-49330978 | Msa0122580:intron | 25.0% |
| ! | GTCCAGTTAAAGTATAAATA+GGG | - | chr1_3:49330960-49330979 | Msa0122580:intron | 25.0% |
| ! | ATCCCTATTTATACTTTAAC+TGG | + | chr1_3:49330965-49330984 | None:intergenic | 25.0% |
| ! | GTTAAAGTATAAATAGGGAT+TGG | - | chr1_3:49330965-49330984 | Msa0122580:intron | 25.0% |
| ! | ATGTTTGGATGAAAAGAAAA+GGG | - | chr1_3:49331061-49331080 | Msa0122580:intron | 25.0% |
| !! | TAGTTAGTTAGTGTTGAAAT+TGG | - | chr1_3:49331098-49331117 | Msa0122580:intron | 25.0% |
| !! | AGTTAGTTAGTGTTGAAATT+GGG | - | chr1_3:49331099-49331118 | Msa0122580:intron | 25.0% |
| ! | CTTGATAAGAGTTTATAAAG+AGG | + | chr1_3:49331171-49331190 | None:intergenic | 25.0% |
| ! | CTTGATAAGAGTTTATAAAG+AGG | + | chr1_3:49331171-49331190 | None:intergenic | 25.0% |
| ! | CATATGTCAGTTAGATAAAT+AGG | - | chr1_3:49331505-49331524 | Msa0122580:intron | 25.0% |
| ! | TATGTCAGTTAGATAAATAG+GGG | - | chr1_3:49331507-49331526 | Msa0122580:intron | 25.0% |
| ! | ATAAATAGGGGAAATAAAGA+TGG | - | chr1_3:49331519-49331538 | Msa0122580:intron | 25.0% |
| ! | GAATTTGATGTTTGTGTAAA+AGG | - | chr1_3:49331557-49331576 | Msa0122580:intron | 25.0% |
| ! | ATTTGATGTTTGTGTAAAAG+GGG | - | chr1_3:49331559-49331578 | Msa0122580:intron | 25.0% |
| ! | AAATAGGATGAAAGATAGAA+AGG | + | chr1_3:49331686-49331705 | None:intergenic | 25.0% |
| ! | AGAGATTGGAATTGAAAAAT+AGG | + | chr1_3:49331702-49331721 | None:intergenic | 25.0% |
| ! | TTTATGATGAATTCCTAACA+TGG | - | chr1_3:49331811-49331830 | Msa0122580:CDS | 25.0% |
| ! | ATCTGAATATTTAGGCAAAT+AGG | - | chr1_3:49331893-49331912 | Msa0122580:CDS | 25.0% |
| ! | TAAATTATCAAGAGGAGTTA+TGG | - | chr1_3:49332102-49332121 | Msa0122580:CDS | 25.0% |
| !!! | TTTTAAAAATTAGTCCGAAC+TGG | - | chr1_3:49332143-49332162 | Msa0122580:CDS | 25.0% |
| ! | ATGAAGTGCAAAACAAAAAT+TGG | + | chr1_3:49332261-49332280 | None:intergenic | 25.0% |
| ! | AATTCTCTGCATAAATATCA+GGG | + | chr1_3:49332400-49332419 | None:intergenic | 25.0% |
| ! | AAATTCTCTGCATAAATATC+AGG | + | chr1_3:49332401-49332420 | None:intergenic | 25.0% |
| ! | TACGATTCTGAATATCTTAT+TGG | - | chr1_3:49332425-49332444 | Msa0122580:intron | 25.0% |
| !!! | CTTATTGGCTCATATAAATT+TGG | - | chr1_3:49332440-49332459 | Msa0122580:intron | 25.0% |
| ! | AATCACAAAAAGTTAAACCT+TGG | + | chr1_3:49332709-49332728 | None:intergenic | 25.0% |
| ! | AAAGAATCGACAAAAATGAA+TGG | + | chr1_3:49332745-49332764 | None:intergenic | 25.0% |
| !! | CTTTGTCTAAGATATATGTT+TGG | - | chr1_3:49332761-49332780 | Msa0122580:intron | 25.0% |
| !! | CACGAAAAAATACTTTTACA+TGG | + | chr1_3:49332958-49332977 | None:intergenic | 25.0% |
| !! | TATCATCATTTAGTTCATTC+TGG | + | chr1_3:49332988-49333007 | None:intergenic | 25.0% |
| ! | AATAGTACTTGAATTGTCAT+CGG | - | chr1_3:49333221-49333240 | Msa0122580:intron | 25.0% |
| ! | AATATATTTAATGTGTCGTG+TGG | - | chr1_3:49333329-49333348 | Msa0122580:intron | 25.0% |
| ! | GAATTATAGGTAACGTAAAA+GGG | + | chr1_3:49333641-49333660 | None:intergenic | 25.0% |
| ! | AGAATTATAGGTAACGTAAA+AGG | + | chr1_3:49333642-49333661 | None:intergenic | 25.0% |
| TTCTGCGAATTTGAAGAAAA+AGG | + | chr1_3:49328335-49328354 | None:intergenic | 30.0% | |
| !!! | TTTATAGCTGATTGGTTTTG+TGG | - | chr1_3:49328585-49328604 | Msa0122580:intron | 30.0% |
| !!! | TTATAGCTGATTGGTTTTGT+GGG | - | chr1_3:49328586-49328605 | Msa0122580:intron | 30.0% |
| !!! | ATTGGGTTTTTTGAAAGAAG+TGG | - | chr1_3:49328619-49328638 | Msa0122580:intron | 30.0% |
| GATAAGAACTTAATGAAGCA+CGG | + | chr1_3:49328878-49328897 | None:intergenic | 30.0% | |
| ATATCCAGCTTATGAAAGTT+AGG | - | chr1_3:49328945-49328964 | Msa0122580:intron | 30.0% | |
| !! | TATCATAAGCTGTTTTCCTA+AGG | - | chr1_3:49328987-49329006 | Msa0122580:intron | 30.0% |
| GATTTGTGTGGTAAAGATTT+CGG | - | chr1_3:49329140-49329159 | Msa0122580:intron | 30.0% | |
| ATTTGTGTGGTAAAGATTTC+GGG | - | chr1_3:49329141-49329160 | Msa0122580:intron | 30.0% | |
| !! | AACTTATTTCCGTTTCTAGT+TGG | - | chr1_3:49329511-49329530 | Msa0122580:CDS | 30.0% |
| TATCATCAACCAACTAGAAA+CGG | + | chr1_3:49329523-49329542 | None:intergenic | 30.0% | |
| !! | TTTCTAGTTGGTTGATGATA+TGG | - | chr1_3:49329523-49329542 | Msa0122580:CDS | 30.0% |
| ! | CAAAGATTCTTTGGAAACTT+TGG | - | chr1_3:49329574-49329593 | Msa0122580:intron | 30.0% |
| ! | ACTGACTTTACTTTCTTTCT+AGG | - | chr1_3:49329721-49329740 | Msa0122580:intron | 30.0% |
| AATCCAGAAAGATTCTATTG+AGG | - | chr1_3:49329789-49329808 | Msa0122580:intron | 30.0% | |
| ATCCAGAAAGATTCTATTGA+GGG | - | chr1_3:49329790-49329809 | Msa0122580:intron | 30.0% | |
| ATGGAAAGAATTGAGGATAT+AGG | - | chr1_3:49329919-49329938 | Msa0122580:intron | 30.0% | |
| CATATGTATTATACCTTCTG+TGG | + | chr1_3:49329968-49329987 | None:intergenic | 30.0% | |
| !! | ACTTTTGCTTTACTTTTACG+TGG | - | chr1_3:49330106-49330125 | Msa0122580:intron | 30.0% |
| !! | CTTTTGCTTTACTTTTACGT+GGG | - | chr1_3:49330107-49330126 | Msa0122580:intron | 30.0% |
| ! | GATTGATGATATGACGAAAA+AGG | - | chr1_3:49330159-49330178 | Msa0122580:intron | 30.0% |
| AATCACTTCACGAAAATTGT+CGG | + | chr1_3:49330188-49330207 | None:intergenic | 30.0% | |
| ACAAATATTACTGCATACAG+GGG | + | chr1_3:49330623-49330642 | None:intergenic | 30.0% | |
| GGTTTACCATAAAGTTATAG+TGG | - | chr1_3:49330727-49330746 | Msa0122580:intron | 30.0% | |
| ! | CTTTTCTTTTCATCCAAACA+TGG | + | chr1_3:49331062-49331081 | None:intergenic | 30.0% |
| CATGTTTGGATGAAAAGAAA+AGG | - | chr1_3:49331060-49331079 | Msa0122580:intron | 30.0% | |
| ! | GTTAGTTAGTGTTGAAATTG+GGG | - | chr1_3:49331100-49331119 | Msa0122580:intron | 30.0% |
| GATAAGAGTTTATAAAGAGG+AGG | + | chr1_3:49331168-49331187 | None:intergenic | 30.0% | |
| ! | TCTGATACCATGTTGTTATT+AGG | - | chr1_3:49331305-49331324 | Msa0122580:intron | 30.0% |
| ! | CTGATACCATGTTGTTATTA+GGG | - | chr1_3:49331306-49331325 | Msa0122580:intron | 30.0% |
| ATATGAACAGTTAGAGAAGT+TGG | - | chr1_3:49331470-49331489 | Msa0122580:intron | 30.0% | |
| ! | AGTTAGAGAAGTTGGTTAAT+TGG | - | chr1_3:49331478-49331497 | Msa0122580:intron | 30.0% |
| AAGATGGAAAAGTTCATTCA+AGG | - | chr1_3:49331535-49331554 | Msa0122580:intron | 30.0% | |
| ATGATTTAATCCTGTTCCAA+GGG | + | chr1_3:49331588-49331607 | None:intergenic | 30.0% | |
| AATGATTTAATCCTGTTCCA+AGG | + | chr1_3:49331589-49331608 | None:intergenic | 30.0% | |
| TTCAGATTAATGCAAGGTAT+TGG | + | chr1_3:49331880-49331899 | None:intergenic | 30.0% | |
| !! | TTTATCTGCTTTTCGATGAA+TGG | - | chr1_3:49331945-49331964 | Msa0122580:intron | 30.0% |
| ! | ATTACAATTTTCTCCCTACT+CGG | + | chr1_3:49332054-49332073 | None:intergenic | 30.0% |
| AAGAGGAGTTATGGTTAATT+AGG | - | chr1_3:49332111-49332130 | Msa0122580:CDS | 30.0% | |
| AAACTAACAGGCAAATTGTT+AGG | + | chr1_3:49332194-49332213 | None:intergenic | 30.0% | |
| GCTCATATAAATTTGGTTGA+TGG | - | chr1_3:49332447-49332466 | Msa0122580:intron | 30.0% | |
| AAAGAAATTCCAAGAACTTC+AGG | - | chr1_3:49332858-49332877 | Msa0122580:intron | 30.0% | |
| CAAATGATCAACTTCAACAT+TGG | - | chr1_3:49333041-49333060 | Msa0122580:intron | 30.0% | |
| ATGATCATTATGTCATTCGT+GGG | + | chr1_3:49333545-49333564 | None:intergenic | 30.0% | |
| AATGATCATTATGTCATTCG+TGG | + | chr1_3:49333546-49333565 | None:intergenic | 30.0% | |
| GCATATCAACACTTAAACAT+TGG | + | chr1_3:49333713-49333732 | None:intergenic | 30.0% | |
| ! | TGTTGATATGCATAGTTTGT+AGG | - | chr1_3:49333722-49333741 | Msa0122580:five_prime_UTR | 30.0% |
| !! | GTTGAGTTGGAAAATGAAGA+AGG | + | chr1_3:49328267-49328286 | None:intergenic | 35.0% |
| ATTGTGAAACTGTGTTGAGT+TGG | + | chr1_3:49328280-49328299 | None:intergenic | 35.0% | |
| ! | GTGGTCTGAATTTTCCATTT+GGG | + | chr1_3:49328358-49328377 | None:intergenic | 35.0% |
| !!! | CATTTTTGCTGTTAGGAGAA+TGG | + | chr1_3:49328452-49328471 | None:intergenic | 35.0% |
| TTTGTGGGTATCTACTGAAT+TGG | - | chr1_3:49328601-49328620 | Msa0122580:intron | 35.0% | |
| TTGTGGGTATCTACTGAATT+GGG | - | chr1_3:49328602-49328621 | Msa0122580:intron | 35.0% | |
| GCTCACTAACTATGAAACTA+TGG | - | chr1_3:49328661-49328680 | Msa0122580:intron | 35.0% | |
| TTCACCTAACTTTCATAAGC+TGG | + | chr1_3:49328952-49328971 | None:intergenic | 35.0% | |
| TTTGTGTGGTAAAGATTTCG+GGG | - | chr1_3:49329142-49329161 | Msa0122580:intron | 35.0% | |
| TAATTGCAATCAACCAACAC+TGG | - | chr1_3:49329421-49329440 | Msa0122580:CDS | 35.0% | |
| AATTGCAATCAACCAACACT+GGG | - | chr1_3:49329422-49329441 | Msa0122580:CDS | 35.0% | |
| TTCTTGAATGATGTGCACAT+TGG | - | chr1_3:49329485-49329504 | Msa0122580:CDS | 35.0% | |
| CTACATAGAAGTAGATCATC+CGG | + | chr1_3:49329766-49329785 | None:intergenic | 35.0% | |
| TTCCCTCAATAGAATCTTTC+TGG | + | chr1_3:49329795-49329814 | None:intergenic | 35.0% | |
| TCTTTCCATCTGATCATCAA+CGG | + | chr1_3:49329908-49329927 | None:intergenic | 35.0% | |
| TGATCAGATGGAAAGAATTG+AGG | - | chr1_3:49329912-49329931 | Msa0122580:intron | 35.0% | |
| AAGAATTGAGGATATAGGTC+AGG | - | chr1_3:49329924-49329943 | Msa0122580:intron | 35.0% | |
| ! | GATATAGGTCAGGTTTTACA+CGG | - | chr1_3:49329934-49329953 | Msa0122580:intron | 35.0% |
| TGATGATATGACGAAAAAGG+AGG | - | chr1_3:49330162-49330181 | Msa0122580:intron | 35.0% | |
| ! | TATACTCCTTGTGTTTTGCA+TGG | + | chr1_3:49330219-49330238 | None:intergenic | 35.0% |
| ! | AAACACAAGGAGTATACTGT+TGG | - | chr1_3:49330223-49330242 | Msa0122580:intron | 35.0% |
| TTCGAACATCAATTTGACCA+TGG | - | chr1_3:49330554-49330573 | Msa0122580:intron | 35.0% | |
| TTTGGTCCATGACATCAATT+TGG | - | chr1_3:49330597-49330616 | Msa0122580:intron | 35.0% | |
| AATTGTACAGAGAACATCTC+TGG | - | chr1_3:49330767-49330786 | Msa0122580:intron | 35.0% | |
| ATCCATTTCCTCGTTTAATC+AGG | - | chr1_3:49330929-49330948 | Msa0122580:intron | 35.0% | |
| TCTTAAGTCCTGATTAAACG+AGG | + | chr1_3:49330940-49330959 | None:intergenic | 35.0% | |
| !!! | CTCTTTTTTCTCTCCATGTT+TGG | - | chr1_3:49331046-49331065 | Msa0122580:intron | 35.0% |
| GTAACTCATCCTTACAAAAC+CGG | - | chr1_3:49331330-49331349 | Msa0122580:intron | 35.0% | |
| ! | TAGAGAAGTTGGTTAATTGG+AGG | - | chr1_3:49331481-49331500 | Msa0122580:intron | 35.0% |
| ! | AGAGAAGTTGGTTAATTGGA+GGG | - | chr1_3:49331482-49331501 | Msa0122580:intron | 35.0% |
| !! | GATTAATGCAAGGTATTGGT+TGG | + | chr1_3:49331876-49331895 | None:intergenic | 35.0% |
| !! | AAAAGTAACACTAGCCTTAG+TGG | - | chr1_3:49332004-49332023 | Msa0122580:intron | 35.0% |
| ! | TTTGCCTGTTAGTTTGATCT+CGG | - | chr1_3:49332199-49332218 | Msa0122580:CDS | 35.0% |
| AAAAATTGGTTGAACCAACC+GGG | + | chr1_3:49332247-49332266 | None:intergenic | 35.0% | |
| CAAAAATTGGTTGAACCAAC+CGG | + | chr1_3:49332248-49332267 | None:intergenic | 35.0% | |
| TTTCGCATTCTATTAATCCG+TGG | - | chr1_3:49332309-49332328 | Msa0122580:intron | 35.0% | |
| TGATTCTCTTGGTTTAACCA+CGG | + | chr1_3:49332329-49332348 | None:intergenic | 35.0% | |
| ! | CATAAATATCAGGGTGTTAC+CGG | + | chr1_3:49332391-49332410 | None:intergenic | 35.0% |
| AGTCAGTCTGAAAATGCAAA+AGG | - | chr1_3:49332566-49332585 | Msa0122580:intron | 35.0% | |
| CTCAATTGAATGCTTCAACT+CGG | + | chr1_3:49332682-49332701 | None:intergenic | 35.0% | |
| GAATCGACAAAAATGAATGG+TGG | + | chr1_3:49332742-49332761 | None:intergenic | 35.0% | |
| ATTGACAAACCTGAAGTTCT+TGG | + | chr1_3:49332870-49332889 | None:intergenic | 35.0% | |
| TCAATTTGAGCTATCTGCAA+TGG | - | chr1_3:49332885-49332904 | Msa0122580:intron | 35.0% | |
| ! | ATTTGCCAAAGAGTATACTC+GGG | + | chr1_3:49333026-49333045 | None:intergenic | 35.0% |
| ! | CATTTGCCAAAGAGTATACT+CGG | + | chr1_3:49333027-49333046 | None:intergenic | 35.0% |
| TCAACATTGGATTGCTGAAT+TGG | - | chr1_3:49333054-49333073 | Msa0122580:intron | 35.0% | |
| TTAATCTCCTTAACTCCCTT+GGG | + | chr1_3:49333454-49333473 | None:intergenic | 35.0% | |
| TTTAATCTCCTTAACTCCCT+TGG | + | chr1_3:49333455-49333474 | None:intergenic | 35.0% | |
| TTATAGGTAACGTAAAAGGG+AGG | + | chr1_3:49333638-49333657 | None:intergenic | 35.0% | |
| TACGTTACCTATAATTCTGC+TGG | - | chr1_3:49333644-49333663 | Msa0122580:CDS | 35.0% | |
| ACGTTACCTATAATTCTGCT+GGG | - | chr1_3:49333645-49333664 | Msa0122580:CDS | 35.0% | |
| ! | ATATGCATAGTTTGTAGGCA+AGG | - | chr1_3:49333727-49333746 | Msa0122580:five_prime_UTR | 35.0% |
| CTTCTTCCTAATGCTTCGTT+TGG | - | chr1_3:49328307-49328326 | Msa0122580:intron | 40.0% | |
| ! | AAGGAACCAAACGAAGCATT+AGG | + | chr1_3:49328316-49328335 | None:intergenic | 40.0% |
| TCAAATTCGCAGAACCCAAA+TGG | - | chr1_3:49328341-49328360 | Msa0122580:intron | 40.0% | |
| ! | CGTGGTCTGAATTTTCCATT+TGG | + | chr1_3:49328359-49328378 | None:intergenic | 40.0% |
| !! | AGATGAGGCTTCTTGTTGTT+GGG | + | chr1_3:49328387-49328406 | None:intergenic | 40.0% |
| ! | AAGATGAGGCTTCTTGTTGT+TGG | + | chr1_3:49328388-49328407 | None:intergenic | 40.0% |
| ! | TGGTTGAATTTGGTGAAACG+CGG | + | chr1_3:49328428-49328447 | None:intergenic | 40.0% |
| ! | GGAGAATGGTTGGTTGAATT+TGG | + | chr1_3:49328438-49328457 | None:intergenic | 40.0% |
| !! | TTTGCTGTTAGGAGAATGGT+TGG | + | chr1_3:49328448-49328467 | None:intergenic | 40.0% |
| AGTCGATCTAAACAGACTCT+AGG | - | chr1_3:49329047-49329066 | Msa0122580:intron | 40.0% | |
| GTCGATCTAAACAGACTCTA+GGG | - | chr1_3:49329048-49329067 | Msa0122580:intron | 40.0% | |
| GGGCTATGAAGAGTAGAAAA+AGG | - | chr1_3:49329068-49329087 | Msa0122580:intron | 40.0% | |
| !! | GTTGATGATATGGCTCTTCT+CGG | - | chr1_3:49329533-49329552 | Msa0122580:intron | 40.0% |
| ! | TTGATGATATGGCTCTTCTC+GGG | - | chr1_3:49329534-49329553 | Msa0122580:intron | 40.0% |
| GATTACCTCGATAATCCACA+AGG | - | chr1_3:49329596-49329615 | Msa0122580:intron | 40.0% | |
| ! | AAGTACCTTGTGGATTATCG+AGG | + | chr1_3:49329604-49329623 | None:intergenic | 40.0% |
| ! | GTGCTTGTTAAAGTACCTTG+TGG | + | chr1_3:49329614-49329633 | None:intergenic | 40.0% |
| !! | TTTGCGTCGGTTATCTACTA+GGG | - | chr1_3:49329858-49329877 | Msa0122580:intron | 40.0% |
| !! | AGATACCGTTGATGATCAGA+TGG | - | chr1_3:49329900-49329919 | Msa0122580:intron | 40.0% |
| TACTCTCCATGCAAAACACA+AGG | - | chr1_3:49330210-49330229 | Msa0122580:intron | 40.0% | |
| TCTGACATTAAACGCCTTAC+AGG | - | chr1_3:49330283-49330302 | Msa0122580:intron | 40.0% | |
| GATGCCCCACTATAACTTTA+TGG | + | chr1_3:49330736-49330755 | None:intergenic | 40.0% | |
| TGAAACAAAGGTGATCTCTG+AGG | - | chr1_3:49330876-49330895 | Msa0122580:intron | 40.0% | |
| GTCCTGATTAAACGAGGAAA+TGG | + | chr1_3:49330934-49330953 | None:intergenic | 40.0% | |
| CTAACTCAGCCTTACAAAAC+CGG | - | chr1_3:49331124-49331143 | Msa0122580:intron | 40.0% | |
| !! | TCTTATGAGCCGGTTTTGTA+AGG | + | chr1_3:49331136-49331155 | None:intergenic | 40.0% |
| GAATCTTATCTACCCGAAGT+AGG | - | chr1_3:49331190-49331209 | Msa0122580:intron | 40.0% | |
| AAAAACCCAAGTCCTACTTC+GGG | + | chr1_3:49331205-49331224 | None:intergenic | 40.0% | |
| GAAAAACCCAAGTCCTACTT+CGG | + | chr1_3:49331206-49331225 | None:intergenic | 40.0% | |
| TCAGAGCTTGTCGAATTCAA+GGG | + | chr1_3:49331290-49331309 | None:intergenic | 40.0% | |
| ATCAGAGCTTGTCGAATTCA+AGG | + | chr1_3:49331291-49331310 | None:intergenic | 40.0% | |
| GTTACGCCCTAATAACAACA+TGG | + | chr1_3:49331315-49331334 | None:intergenic | 40.0% | |
| !! | TCTTATGAGCCGGTTTTGTA+AGG | + | chr1_3:49331136-49331155 | None:intergenic | 40.0% |
| ACACTCTTCATCTTATGAGC+CGG | + | chr1_3:49331352-49331371 | None:intergenic | 40.0% | |
| TTGGGTCTTTCCCAATAGTT+AGG | - | chr1_3:49331421-49331440 | Msa0122580:intron | 40.0% | |
| AGTAACTTACGAGCAGAGAT+TGG | + | chr1_3:49331716-49331735 | None:intergenic | 40.0% | |
| AAAAATTAGTCCGAACTGGC+TGG | - | chr1_3:49332147-49332166 | Msa0122580:CDS | 40.0% | |
| GTAACCGAGATCAAACTAAC+AGG | + | chr1_3:49332206-49332225 | None:intergenic | 40.0% | |
| AAAATTGGTTGAACCAACCG+GGG | + | chr1_3:49332246-49332265 | None:intergenic | 40.0% | |
| !! | CTCTAGGACATTGATTCTCT+TGG | + | chr1_3:49332340-49332359 | None:intergenic | 40.0% |
| CAAGAGAATCAATGTCCTAG+AGG | - | chr1_3:49332338-49332357 | Msa0122580:intron | 40.0% | |
| AATGCAAAAGGATGCAGCTA+TGG | - | chr1_3:49332578-49332597 | Msa0122580:intron | 40.0% | |
| ATGCAAAAGGATGCAGCTAT+GGG | - | chr1_3:49332579-49332598 | Msa0122580:intron | 40.0% | |
| ! | ATTCACTGAATCAGCATTGG+AGG | + | chr1_3:49332613-49332632 | None:intergenic | 40.0% |
| !! | TCCAATGCTGATTCAGTGAA+TGG | - | chr1_3:49332612-49332631 | Msa0122580:intron | 40.0% |
| TCCATTCACTGAATCAGCAT+TGG | + | chr1_3:49332616-49332635 | None:intergenic | 40.0% | |
| ! | CGAGTTGAAGCATTCAATTG+AGG | - | chr1_3:49332680-49332699 | Msa0122580:CDS | 40.0% |
| ! | CGACAAAAATGAATGGTGGA+AGG | + | chr1_3:49332738-49332757 | None:intergenic | 40.0% |
| CAATTCCCGAGTATACTCTT+TGG | - | chr1_3:49333018-49333037 | Msa0122580:intron | 40.0% | |
| TTAATGTGTCGTGTGGTTTG+TGG | - | chr1_3:49333336-49333355 | Msa0122580:intron | 40.0% | |
| ! | TAATGTGTCGTGTGGTTTGT+GGG | - | chr1_3:49333337-49333356 | Msa0122580:intron | 40.0% |
| TAATCTCCTTAACTCCCTTG+GGG | + | chr1_3:49333453-49333472 | None:intergenic | 40.0% | |
| GGCTAGGATTAGATCAAACT+AGG | + | chr1_3:49333573-49333592 | None:intergenic | 40.0% | |
| GTGAAAGACAAAGACGACAA+AGG | - | chr1_3:49333775-49333794 | Msa0122580:five_prime_UTR | 40.0% | |
| GACGACAAAGGTAAAAACGA+CGG | - | chr1_3:49333787-49333806 | Msa0122580:five_prime_UTR | 40.0% | |
| GAAACAGGAGTGAGAAGATG+AGG | + | chr1_3:49328402-49328421 | None:intergenic | 45.0% | |
| ! | GGTTGAATTTGGTGAAACGC+GGG | + | chr1_3:49328427-49328446 | None:intergenic | 45.0% |
| !! | TCAGAAGTGTCAGTGCTACA+TGG | + | chr1_3:49328730-49328749 | None:intergenic | 45.0% |
| !! | GTAGCACTGACACTTCTGAT+AGG | - | chr1_3:49328731-49328750 | Msa0122580:intron | 45.0% |
| TGAAGCACGGACACTTACAT+CGG | + | chr1_3:49328865-49328884 | None:intergenic | 45.0% | |
| TAACTGCAAATGCTCCTTCC+AGG | - | chr1_3:49329266-49329285 | Msa0122580:intron | 45.0% | |
| !!! | GCTGAACAAGCTGCTGATTT+TGG | + | chr1_3:49329314-49329333 | None:intergenic | 45.0% |
| AACGCAGAAACACGCTTTAC+AGG | - | chr1_3:49329341-49329360 | Msa0122580:intron | 45.0% | |
| AATCAACCAACACTGGGATC+AGG | - | chr1_3:49329428-49329447 | Msa0122580:CDS | 45.0% | |
| GAATAACCTGATCCCAGTGT+TGG | + | chr1_3:49329437-49329456 | None:intergenic | 45.0% | |
| TGGGAGAGGCAAAGATTCTT+TGG | - | chr1_3:49329565-49329584 | Msa0122580:intron | 45.0% | |
| AGATAACCGACGCAAAGCAA+GGG | + | chr1_3:49329854-49329873 | None:intergenic | 45.0% | |
| TAGATAACCGACGCAAAGCA+AGG | + | chr1_3:49329855-49329874 | None:intergenic | 45.0% | |
| !! | CTTTGCGTCGGTTATCTACT+AGG | - | chr1_3:49329857-49329876 | Msa0122580:intron | 45.0% |
| CACGGAGATTTATCCACAGA+AGG | - | chr1_3:49329952-49329971 | Msa0122580:intron | 45.0% | |
| !! | CGGTTTTGTAAGGCTGAGTT+AGG | + | chr1_3:49331126-49331145 | None:intergenic | 45.0% |
| ! | CAAAACCGGCTCATAAGATG+AGG | - | chr1_3:49331138-49331157 | Msa0122580:intron | 45.0% |
| TATCTACCCGAAGTAGGACT+TGG | - | chr1_3:49331196-49331215 | Msa0122580:intron | 45.0% | |
| ATCTACCCGAAGTAGGACTT+GGG | - | chr1_3:49331197-49331216 | Msa0122580:intron | 45.0% | |
| ! | GAGTCTTATCTACCCGAAGT+AGG | - | chr1_3:49331396-49331415 | Msa0122580:intron | 45.0% |
| TATCTACCCGAAGTAGGACT+TGG | - | chr1_3:49331196-49331215 | Msa0122580:intron | 45.0% | |
| ATCTACCCGAAGTAGGACTT+GGG | - | chr1_3:49331197-49331216 | Msa0122580:intron | 45.0% | |
| AAAGACCCAAGTCCTACTTC+GGG | + | chr1_3:49331411-49331430 | None:intergenic | 45.0% | |
| GAAAGACCCAAGTCCTACTT+CGG | + | chr1_3:49331412-49331431 | None:intergenic | 45.0% | |
| TGTGTAAAAGGGGAAACCCT+TGG | - | chr1_3:49331569-49331588 | Msa0122580:intron | 45.0% | |
| !! | AGTAACACTAGCCTTAGTGG+AGG | - | chr1_3:49332007-49332026 | Msa0122580:intron | 45.0% |
| CAAAACTGCATCCTCCACTA+AGG | + | chr1_3:49332021-49332040 | None:intergenic | 45.0% | |
| TTTGCAGTAGTATGCCGAGT+AGG | - | chr1_3:49332037-49332056 | Msa0122580:intron | 45.0% | |
| TTGCAGTAGTATGCCGAGTA+GGG | - | chr1_3:49332038-49332057 | Msa0122580:intron | 45.0% | |
| ACCAATTGAACCAGCCAGTT+CGG | + | chr1_3:49332160-49332179 | None:intergenic | 45.0% | |
| ATCTCGGTTACATTGCAGTC+TGG | - | chr1_3:49332215-49332234 | Msa0122580:CDS | 45.0% | |
| TACCGGAGTGGATATTGAAC+CGG | + | chr1_3:49332374-49332393 | None:intergenic | 45.0% | |
| GCATTCAATTGAGGAAGCCA+AGG | - | chr1_3:49332689-49332708 | Msa0122580:CDS | 45.0% | |
| TTTCTGAGCTCCAAGATGCA+CGG | - | chr1_3:49332815-49332834 | Msa0122580:intron | 45.0% | |
| ! | GATTTTCTTCCCGTGCATCT+TGG | + | chr1_3:49332828-49332847 | None:intergenic | 45.0% |
| !! | TCATGTTAACTTGTGCCCCA+AGG | - | chr1_3:49333435-49333454 | Msa0122580:intron | 45.0% |
| !! | CATGTTAACTTGTGCCCCAA+GGG | - | chr1_3:49333436-49333455 | Msa0122580:intron | 45.0% |
| TCACTGCCCAGCAGAATTAT+AGG | + | chr1_3:49333654-49333673 | None:intergenic | 45.0% | |
| ACACTTAAACATTGGCCACG+AGG | + | chr1_3:49333705-49333724 | None:intergenic | 45.0% | |
| ! | TGCATAGTTTGTAGGCAAGG+TGG | - | chr1_3:49333730-49333749 | Msa0122580:five_prime_UTR | 45.0% |
| !! | TTGTGGCTTTGTGATGCTGA+TGG | - | chr1_3:49333753-49333772 | Msa0122580:five_prime_UTR | 45.0% |
| !!! | ATAAAATTTAATTTAGAAAA+AGG | + | chr1_3:49333409-49333428 | None:intergenic | 5.0% |
| !!! | TTCTAAATTAAATTTTATAA+AGG | - | chr1_3:49333411-49333430 | Msa0122580:intron | 5.0% |
| !!! | TCTAAATTAAATTTTATAAA+GGG | - | chr1_3:49333412-49333431 | Msa0122580:intron | 5.0% |
| !!! | TTAACAAATAAATTTTATAT+TGG | - | chr1_3:49333481-49333500 | Msa0122580:intron | 5.0% |
| !! | TCTTGTTGTTGGGTTCGTCG+TGG | + | chr1_3:49328377-49328396 | None:intergenic | 50.0% |
| ! | GCACTGACACTTCTGATAGG+AGG | - | chr1_3:49328734-49328753 | Msa0122580:intron | 50.0% |
| CTGACACTTCTGATAGGAGG+CGG | - | chr1_3:49328737-49328756 | Msa0122580:intron | 50.0% | |
| CTCTTCTCGGGATACAAGCT+GGG | - | chr1_3:49329546-49329565 | Msa0122580:intron | 50.0% | |
| TTCCCTTCCTTCGTGTCATC+CGG | - | chr1_3:49329744-49329763 | Msa0122580:intron | 50.0% | |
| ATCCGGATGACACGAAGGAA+GGG | + | chr1_3:49329749-49329768 | None:intergenic | 50.0% | |
| AGATCATCCGGATGACACGA+AGG | + | chr1_3:49329754-49329773 | None:intergenic | 50.0% | |
| CAGGGGCCAAATTGATGTCA+TGG | + | chr1_3:49330606-49330625 | None:intergenic | 50.0% | |
| GCACTCCTCATCTTATGAGC+CGG | + | chr1_3:49331146-49331165 | None:intergenic | 50.0% | |
| AAAAAGAGGGCTGGGCGTAA+GGG | + | chr1_3:49331240-49331259 | None:intergenic | 50.0% | |
| ! | TTACGCCCAGCCCTCTTTTT+GGG | - | chr1_3:49331240-49331259 | Msa0122580:intron | 50.0% |
| ACGCACCAAGCCCAAAAAGA+GGG | + | chr1_3:49331253-49331272 | None:intergenic | 50.0% | |
| AAAGGGGAAACCCTTGGAAC+AGG | - | chr1_3:49331575-49331594 | Msa0122580:intron | 50.0% | |
| ! | TCCGAACTGGCTGGTTCAAT+TGG | - | chr1_3:49332156-49332175 | Msa0122580:CDS | 50.0% |
| ATTGCAGTCTGGTTGAACCC+CGG | - | chr1_3:49332226-49332245 | Msa0122580:CDS | 50.0% | |
| ! | ATATCAGGGTGTTACCGGAG+TGG | + | chr1_3:49332386-49332405 | None:intergenic | 50.0% |
| AGGAGAGCTTGACGAGATTG+TGG | - | chr1_3:49332515-49332534 | Msa0122580:CDS | 50.0% | |
| CTTCAACTCGGACAAACCCA+TGG | + | chr1_3:49332670-49332689 | None:intergenic | 50.0% | |
| TTCTGAGCTCCAAGATGCAC+GGG | - | chr1_3:49332816-49332835 | Msa0122580:intron | 50.0% | |
| CATTCGTGGGATTTGCACGA+AGG | + | chr1_3:49333532-49333551 | None:intergenic | 50.0% | |
| ATGGGTGGCATGCAAGAGAA+CGG | + | chr1_3:49333594-49333613 | None:intergenic | 50.0% | |
| !! | TGAGTTCAGTGGTGGGTCAT+GGG | + | chr1_3:49333612-49333631 | None:intergenic | 50.0% |
| GAGGAAGTGAGTTCAGTGGT+GGG | + | chr1_3:49333619-49333638 | None:intergenic | 50.0% | |
| AAGGGAGGAAGTGAGTTCAG+TGG | + | chr1_3:49333623-49333642 | None:intergenic | 50.0% | |
| TAATTCTGCTGGGCAGTGAC+TGG | - | chr1_3:49333655-49333674 | Msa0122580:CDS | 50.0% | |
| GAGGATGCGGTGTACAAAAC+CGG | + | chr1_3:49333686-49333705 | None:intergenic | 50.0% | |
| ! | TTTTGTACACCGCATCCTCG+TGG | - | chr1_3:49333687-49333706 | Msa0122580:CDS | 50.0% |
| AAACATTGGCCACGAGGATG+CGG | + | chr1_3:49333699-49333718 | None:intergenic | 50.0% | |
| GTTTGTAGGCAAGGTGGTTG+TGG | - | chr1_3:49333736-49333755 | Msa0122580:five_prime_UTR | 50.0% | |
| GGTGAAACGCGGGAAGAAAC+AGG | + | chr1_3:49328417-49328436 | None:intergenic | 55.0% | |
| GTAAGAGACCTGCATCAGCC+TGG | + | chr1_3:49329287-49329306 | None:intergenic | 55.0% | |
| GCTCTTCTCGGGATACAAGC+TGG | - | chr1_3:49329545-49329564 | Msa0122580:intron | 55.0% | |
| CATCCGGATGACACGAAGGA+AGG | + | chr1_3:49329750-49329769 | None:intergenic | 55.0% | |
| AGGAAGCCCTTGCTTTGCGT+CGG | - | chr1_3:49329845-49329864 | Msa0122580:intron | 55.0% | |
| AAAAGAGGGCTGGGCGTAAG+GGG | + | chr1_3:49331239-49331258 | None:intergenic | 55.0% | |
| CAAAAAGAGGGCTGGGCGTA+AGG | + | chr1_3:49331241-49331260 | None:intergenic | 55.0% | |
| ! | CTTACGCCCAGCCCTCTTTT+TGG | - | chr1_3:49331239-49331258 | Msa0122580:intron | 55.0% |
| CCAAGCCCAAAAAGAGGGCT+GGG | + | chr1_3:49331248-49331267 | None:intergenic | 55.0% | |
| ACCAAGCCCAAAAAGAGGGC+TGG | + | chr1_3:49331249-49331268 | None:intergenic | 55.0% | |
| CACGCACCAAGCCCAAAAAG+AGG | + | chr1_3:49331254-49331273 | None:intergenic | 55.0% | |
| !!! | CTCTTTTTGGGCTTGGTGCG+TGG | - | chr1_3:49331252-49331271 | Msa0122580:intron | 55.0% |
| !! | TTTGGGCTTGGTGCGTGGAT+AGG | - | chr1_3:49331257-49331276 | Msa0122580:intron | 55.0% |
| TTGGTGCGTGGATAGGTAGG+TGG | - | chr1_3:49331264-49331283 | Msa0122580:intron | 55.0% | |
| GAGTGGATATTGAACCGGCG+TGG | + | chr1_3:49332369-49332388 | None:intergenic | 55.0% | |
| !! | CGCCGGTTCAATATCCACTC+CGG | - | chr1_3:49332369-49332388 | Msa0122580:intron | 55.0% |
| TCCTGAGAAGCCTGCAGACA+GGG | - | chr1_3:49332644-49332663 | Msa0122580:CDS | 55.0% | |
| CTTGTGCCCCAAGGGAGTTA+AGG | - | chr1_3:49333444-49333463 | Msa0122580:intron | 55.0% | |
| CGTGGGATTTGCACGAAGGT+TGG | + | chr1_3:49333528-49333547 | None:intergenic | 55.0% | |
| TGGCATGCAAGAGAACGGCT+AGG | + | chr1_3:49333589-49333608 | None:intergenic | 55.0% | |
| !! | GTGAGTTCAGTGGTGGGTCA+TGG | + | chr1_3:49333613-49333632 | None:intergenic | 55.0% |
| GGAGGAAGTGAGTTCAGTGG+TGG | + | chr1_3:49333620-49333639 | None:intergenic | 55.0% | |
| TGCTCCTTCCAGGCTGATGC+AGG | - | chr1_3:49329276-49329295 | Msa0122580:intron | 60.0% | |
| GAGACCTGCATCAGCCTGGA+AGG | + | chr1_3:49329283-49329302 | None:intergenic | 60.0% | |
| CTCGGGATACAAGCTGGGAG+AGG | - | chr1_3:49329551-49329570 | Msa0122580:intron | 60.0% | |
| ! | GGGCGTAAGGGGGGTGTATT+AGG | + | chr1_3:49331228-49331247 | None:intergenic | 60.0% |
| AAAGAGGGCTGGGCGTAAGG+GGG | + | chr1_3:49331238-49331257 | None:intergenic | 60.0% | |
| !! | CCCAGCCCTCTTTTTGGGCT+TGG | - | chr1_3:49331245-49331264 | Msa0122580:intron | 60.0% |
| !! | GGCTTGGTGCGTGGATAGGT+AGG | - | chr1_3:49331261-49331280 | Msa0122580:intron | 60.0% |
| CAGTCTGGTTGAACCCCGGT+TGG | - | chr1_3:49332230-49332249 | Msa0122580:CDS | 60.0% | |
| CTCCTGAGAAGCCTGCAGAC+AGG | - | chr1_3:49332643-49332662 | Msa0122580:CDS | 60.0% | |
| AAGCCTGCAGACAGGGCCAT+GGG | - | chr1_3:49332651-49332670 | Msa0122580:CDS | 60.0% | |
| AAACCCATGGCCCTGTCTGC+AGG | + | chr1_3:49332657-49332676 | None:intergenic | 60.0% | |
| !! | GTTCAGTGGTGGGTCATGGG+TGG | + | chr1_3:49333609-49333628 | None:intergenic | 60.0% |
| !! | TGGGCAGTGACTGGTTCTGC+CGG | - | chr1_3:49333664-49333683 | Msa0122580:CDS | 60.0% |
| AAGAGGGCTGGGCGTAAGGG+GGG | + | chr1_3:49331237-49331256 | None:intergenic | 65.0% | |
| TCCTAGAGGTCTCGCCACGC+CGG | - | chr1_3:49332352-49332371 | Msa0122580:intron | 65.0% | |
| GCCCTGTCTGCAGGCTTCTC+AGG | + | chr1_3:49332648-49332667 | None:intergenic | 65.0% | |
| GAAGCCTGCAGACAGGGCCA+TGG | - | chr1_3:49332650-49332669 | Msa0122580:CDS | 65.0% | |
| ACCGGCGTGGCGAGACCTCT+AGG | + | chr1_3:49332356-49332375 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49328257 | 49333810 | 49328257 | ID=Msa0122580;Name=Msa0122580 |
| chr1_3 | mRNA | 49328257 | 49333810 | 49328257 | ID=Msa0122580-mRNA-1;Parent=Msa0122580;Name=Msa0122580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=103|0.87|0.77|0.88|1|0.88|9|0|375 |
| chr1_3 | exon | 49328257 | 49328323 | 49328257 | ID=Msa0122580-mRNA-1:exon:14952;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49329059 | 49329078 | 49329059 | ID=Msa0122580-mRNA-1:exon:14951;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49329188 | 49329271 | 49329188 | ID=Msa0122580-mRNA-1:exon:14950;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49329357 | 49329550 | 49329357 | ID=Msa0122580-mRNA-1:exon:14949;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49331763 | 49331930 | 49331763 | ID=Msa0122580-mRNA-1:exon:14948;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49332094 | 49332324 | 49332094 | ID=Msa0122580-mRNA-1:exon:14947;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49332450 | 49332537 | 49332450 | ID=Msa0122580-mRNA-1:exon:14946;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49332618 | 49332779 | 49332618 | ID=Msa0122580-mRNA-1:exon:14945;Parent=Msa0122580-mRNA-1 |
| chr1_3 | exon | 49333597 | 49333810 | 49333597 | ID=Msa0122580-mRNA-1:exon:14944;Parent=Msa0122580-mRNA-1 |
| chr1_3 | five_prime_UTR | 49333708 | 49333810 | 49333708 | ID=Msa0122580-mRNA-1:five_prime_utr;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49333597 | 49333707 | 49333597 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49332618 | 49332779 | 49332618 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49332450 | 49332537 | 49332450 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49332094 | 49332324 | 49332094 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49331763 | 49331930 | 49331763 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49329357 | 49329550 | 49329357 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49329188 | 49329271 | 49329188 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49329059 | 49329078 | 49329059 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| chr1_3 | CDS | 49328257 | 49328323 | 49328257 | ID=Msa0122580-mRNA-1:cds;Parent=Msa0122580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
