AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749400 MtrunA17_Chr5g0406721 88.312 462 10 4 80 497 1 462 0.0 772
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749400 AT5G66030.4 59.000 300 117 3 201 497 22 318 1.99e-103 324
Msa0749400 AT5G66030.3 59.000 300 117 3 201 497 22 318 5.39e-103 324
Msa0749400 AT5G66030.2 59.000 300 117 3 201 497 22 318 1.27e-102 324
Msa0749400 AT5G66030.1 59.000 300 117 3 201 497 22 318 1.68e-102 325

Find 117 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTCATCCTTCCTTTGC+TGG 0.174319 5_2:-2912471 None:intergenic
AGCTTCTTCGGATGCAATTC+TGG 0.218013 5_2:-2913079 None:intergenic
GTAAATATTGTATTGGAAAA+TGG 0.236129 5_2:+2912496 Msa0749400:CDS
ACCAACTTCTTTCTGTATAC+TGG 0.244185 5_2:-2912968 None:intergenic
TTTGCAGAATTTGGAGAGTT+TGG 0.258175 5_2:+2915987 Msa0749400:intron
AGAATTCATTCTGAGATTTC+AGG 0.260515 5_2:-2912903 None:intergenic
CCATCTGACAAATGCTCCTC+TGG 0.321478 5_2:-2912676 None:intergenic
GACTCAAGAGCCTCCTCTTT+AGG 0.322229 5_2:-2915275 None:intergenic
ATTATTACAATCTCAGTAAC+TGG 0.345527 5_2:+2911154 Msa0749400:CDS
GTGATACGAGAAGTTGATAA+TGG 0.345740 5_2:+2912327 Msa0749400:intron
GGGAGAAAACGGTGCCGTTT+AGG 0.347902 5_2:-2911250 None:intergenic
CATTGCTAAACCCCTCAATC+TGG 0.360562 5_2:-2912933 None:intergenic
GAGATACCATTGAGGATTTA+CGG 0.361062 5_2:+2915240 Msa0749400:CDS
TGAAGCCGCGGCGGATGTTA+AGG 0.378753 5_2:-2911272 None:intergenic
CTCTCTGAGCAGCTTGTAGA+AGG 0.379695 5_2:+2913153 Msa0749400:CDS
AACAATGAAAGAAAGAGGTT+TGG 0.383711 5_2:-2911179 None:intergenic
ATTCACCTGCAGTGAAGAAA+TGG 0.390871 5_2:-2916058 None:intergenic
GCAATTGTCACTTGCAGAAA+AGG 0.391238 5_2:+2915301 Msa0749400:CDS
GTCAGATGGAAACGAAGTTC+TGG 0.395150 5_2:+2912690 Msa0749400:CDS
AACTTGATGCCAAGTTGAAT+AGG 0.404833 5_2:+2913348 Msa0749400:CDS
AACGAAGGTCCGACTGATAC+TGG 0.405806 5_2:+2912616 Msa0749400:intron
AAGGTGCTTCAAAGCTTCTT+CGG 0.415250 5_2:-2913091 None:intergenic
GCATCTGGTGAAGGTGATAC+TGG 0.418417 5_2:+2912379 Msa0749400:CDS
TGATACGAGAAGTTGATAAT+GGG 0.425175 5_2:+2912328 Msa0749400:intron
AAACGTAACGAGACGGTGAC+TGG 0.426695 5_2:+2911217 Msa0749400:CDS
TTGTTGCAATGCTGACTGTT+GGG 0.429814 5_2:-2913887 None:intergenic
CATCTGAGTACGCAATTTGA+AGG 0.437273 5_2:-2913110 None:intergenic
AACAAGAAGTCGATGGCATC+TGG 0.438022 5_2:+2912364 Msa0749400:CDS
AGTTGAATAGGCTTCACAAA+AGG 0.438247 5_2:+2913360 Msa0749400:CDS
TCGCCGGCACGGTGGCGAAA+TGG 0.443798 5_2:-2911298 None:intergenic
AACGAAGTTCTGGCTGATAC+TGG 0.448934 5_2:+2912700 Msa0749400:CDS
AATGAAGGTCCGGCTGATAC+TGG 0.456678 5_2:+2912532 Msa0749400:CDS
GAAGCCGCGGCGGATGTTAA+GGG 0.457122 5_2:-2911271 None:intergenic
CGAGTCCATTTCTTCACTGC+AGG 0.457585 5_2:+2916053 Msa0749400:CDS
AAGTTGGTGGTACGGAAGAC+GGG 0.460944 5_2:+2912983 Msa0749400:CDS
AAGCTGCTCAGAGAGATCTT+TGG 0.462974 5_2:-2913145 None:intergenic
CCTTGTATTGCACGAGTATG+AGG 0.462984 5_2:-2911351 None:intergenic
TGAAAGCCATGGATGGTGAT+AGG 0.465393 5_2:+2913947 Msa0749400:CDS
CTTCGAACAATGAAAGAAAG+AGG 0.470516 5_2:-2911184 None:intergenic
ATGAATCAGCAAAGCAAAGA+TGG 0.471482 5_2:+2912787 Msa0749400:CDS
CTCGGCTGCCTTTCTCCTAT+CGG 0.473368 5_2:-2916034 None:intergenic
GTCACTTGCAGAAAAGGAAC+AGG 0.473473 5_2:+2915307 Msa0749400:CDS
TCACGATGAGCTTCTGCAAA+TGG 0.473971 5_2:+2912873 Msa0749400:CDS
ATCTGATGGAAATGAAGGTC+CGG 0.480640 5_2:+2912522 Msa0749400:CDS
GAATCAGACAAATGCTCCTC+AGG 0.483026 5_2:-2912760 None:intergenic
GCTCTCTGCTAAACATCAAA+AGG 0.484789 5_2:+2915776 Msa0749400:CDS
CTGGACTGAACATTCCTAAA+CGG 0.489407 5_2:+2911236 Msa0749400:CDS
GCAGAATTTGGAGAGTTTGG+AGG 0.490026 5_2:+2915990 Msa0749400:intron
GAAGCGGGAACCGCTGATGA+AGG 0.490027 5_2:-2911326 None:intergenic
TTCTTGAAATCCCAGATTGA+GGG 0.490247 5_2:+2912922 Msa0749400:CDS
GGCTTATCTGATGGAAATGA+AGG 0.492082 5_2:+2912517 Msa0749400:CDS
GTGTGTAGCTCAAAATAAGC+TGG 0.495154 5_2:+2913289 Msa0749400:intron
CTCAGCAGATTCGTTTAACT+CGG 0.497634 5_2:-2913854 None:intergenic
TGTTGAATTGCAGCTTGTGC+TGG 0.500904 5_2:+2912296 Msa0749400:intron
AGGTGATACTGGTGGAAAGA+TGG 0.501992 5_2:+2912390 Msa0749400:CDS
CTTGTTGCAATGCTGACTGT+TGG 0.506458 5_2:-2913888 None:intergenic
CCTCATACTCGTGCAATACA+AGG 0.512821 5_2:+2911351 Msa0749400:CDS
GTTGAATAGGCTTCACAAAA+GGG 0.513691 5_2:+2913361 Msa0749400:CDS
ACGCATTCAAGAAGTTCAAA+AGG 0.518457 5_2:+2913391 Msa0749400:CDS
TCATATCAGAATCAGACAAA+TGG 0.519407 5_2:-2912447 None:intergenic
CCAGAGGAGCATTTGTCAGA+TGG 0.521431 5_2:+2912676 Msa0749400:CDS
AAGTGATGTAAATATTGTAT+TGG 0.523227 5_2:+2912489 Msa0749400:CDS
ATTCTTGAAATCCCAGATTG+AGG 0.523848 5_2:+2912921 Msa0749400:CDS
TTGTTGCCTATCACCATCCA+TGG 0.524711 5_2:-2913953 None:intergenic
TTTGTGAAGCCTATTCAACT+TGG 0.524900 5_2:-2913357 None:intergenic
GCGTTCATTGCAACCTAAAG+AGG 0.525275 5_2:+2915262 Msa0749400:CDS
GAAGTTGGTGGTACGGAAGA+CGG 0.526029 5_2:+2912982 Msa0749400:CDS
TTGTGAAAGAACTTCGAGAA+AGG 0.527882 5_2:+2913016 Msa0749400:CDS
CTGCAGTGAAGAAATGGACT+CGG 0.531990 5_2:-2916052 None:intergenic
GATCCATTTCGCCACCGTGC+CGG 0.535189 5_2:+2911295 Msa0749400:CDS
GGGGTTTAGCAATGTTGAGA+GGG 0.537454 5_2:+2912942 Msa0749400:intron
TTGGAAAATGGCTTATCTGA+TGG 0.538678 5_2:+2912508 Msa0749400:CDS
AACAAGGAAACAAGCAAATG+AGG 0.539583 5_2:+2913921 Msa0749400:CDS
GCTGATGAAGGCGAGATCGC+CGG 0.541762 5_2:-2911314 None:intergenic
TCCAGTATACAGAAAGAAGT+TGG 0.542727 5_2:+2912967 Msa0749400:CDS
TGCTGTATCCGATAGGAGAA+AGG 0.548396 5_2:+2916026 Msa0749400:CDS
AGGGGTTTAGCAATGTTGAG+AGG 0.551883 5_2:+2912941 Msa0749400:intron
ATTGCTAAACCCCTCAATCT+GGG 0.551982 5_2:-2912932 None:intergenic
GCACGAGTATGAGGAGGAAG+CGG 0.557305 5_2:-2911342 None:intergenic
CACGAGTATGAGGAGGAAGC+GGG 0.560830 5_2:-2911341 None:intergenic
ACAGAAAGAAGTTGGTGGTA+CGG 0.566778 5_2:+2912975 Msa0749400:CDS
TGAACGCCGTAAATCCTCAA+TGG 0.567971 5_2:-2915246 None:intergenic
AACAAGAGTTAGAGCGAACA+AGG 0.568118 5_2:+2913905 Msa0749400:CDS
AAGCCGCGGCGGATGTTAAG+GGG 0.573765 5_2:-2911270 None:intergenic
CGGATGTTAAGGGGAGAAAA+CGG 0.578135 5_2:-2911261 None:intergenic
AAGTCGATGGCATCTGGTGA+AGG 0.582381 5_2:+2912370 Msa0749400:CDS
GGCGATCTCGCCTTCATCAG+CGG 0.586638 5_2:+2911316 Msa0749400:CDS
GACTGATACTGGTGGAACGA+TGG 0.588028 5_2:+2912627 Msa0749400:CDS
TCTTGAAATCCCAGATTGAG+GGG 0.593814 5_2:+2912923 Msa0749400:CDS
GGCTGATACTGGTGGAACGA+TGG 0.598449 5_2:+2912711 Msa0749400:CDS
TGATATGAACCAGCAAAGGA+AGG 0.603160 5_2:+2912462 Msa0749400:CDS
ACAGTTCCACCAGTATCAGC+CGG 0.609423 5_2:-2912541 None:intergenic
AAATGAGGCGTTGAAAGCCA+TGG 0.618853 5_2:+2913936 Msa0749400:CDS
ATTCTGATATGAACCAGCAA+AGG 0.620546 5_2:+2912458 Msa0749400:CDS
GAAGTTCTGGCTGATACTGG+TGG 0.621730 5_2:+2912703 Msa0749400:CDS
TTCATTGCAACCTAAAGAGG+AGG 0.621987 5_2:+2915265 Msa0749400:CDS
ATCGTTCCACCAGTATCAGT+CGG 0.628423 5_2:-2912625 None:intergenic
AGGATTGCTTCGAACTGCCG+AGG 0.631572 5_2:+2915728 Msa0749400:CDS
GTACTCAGATGCAGAAGCAA+AGG 0.633740 5_2:+2913122 Msa0749400:CDS
TCAATGATGCTGTATCCGAT+AGG 0.635857 5_2:+2916019 Msa0749400:CDS
TGAAGGCGAGATCGCCGGCA+CGG 0.638546 5_2:-2911309 None:intergenic
CAGACTTCGAGATACCATTG+AGG 0.644254 5_2:+2915232 Msa0749400:intron
AGTTGGTGGTACGGAAGACG+GGG 0.650080 5_2:+2912984 Msa0749400:CDS
AGTATACAGAAAGAAGTTGG+TGG 0.653400 5_2:+2912970 Msa0749400:CDS
TCTGGTGAAGGTGATACTGG+TGG 0.663250 5_2:+2912382 Msa0749400:CDS
GCGAAATGGATCTGAAGCCG+CGG 0.665876 5_2:-2911284 None:intergenic
GAGGCGTTGAAAGCCATGGA+TGG 0.667270 5_2:+2913940 Msa0749400:CDS
AAATGGATCTGAAGCCGCGG+CGG 0.669266 5_2:-2911281 None:intergenic
GAAGGTCCGACTGATACTGG+TGG 0.678137 5_2:+2912619 Msa0749400:intron
GATACGAGAAGTTGATAATG+GGG 0.681269 5_2:+2912329 Msa0749400:intron
ACAAGATTCGTCAAAACCTG+AGG 0.691768 5_2:+2912744 Msa0749400:CDS
TGTATTGCACGAGTATGAGG+AGG 0.693317 5_2:-2911348 None:intergenic
ACAAGATTCATGTAAACCAG+AGG 0.708170 5_2:+2912660 Msa0749400:CDS
AGGCGAGATCGCCGGCACGG+TGG 0.709256 5_2:-2911306 None:intergenic
GAACTACAAACGTAACGAGA+CGG 0.709608 5_2:+2911210 Msa0749400:CDS
CAGATGCTGGAAGATATGAG+AGG 0.711762 5_2:+2915708 Msa0749400:intron
TCTCCCCTTAACATCCGCCG+CGG 0.764948 5_2:+2911267 Msa0749400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATATAATTAAAAAT+AGG - chr5_2:2915190-2915209 None:intergenic 0.0%
!! AAGTAAAAAATAATTAATGA+TGG + chr5_2:2914195-2914214 Msa0749400:intron 10.0%
!!! TGATTTTCTCAAATTATTAT+TGG - chr5_2:2912110-2912129 None:intergenic 15.0%
!! TAAAAAATAATTAATGATGG+TGG + chr5_2:2914198-2914217 Msa0749400:intron 15.0%
!! AAAAAATAATTAATGATGGT+GGG + chr5_2:2914199-2914218 Msa0749400:intron 15.0%
!! TCTCCATTTATAAAAATAAA+TGG - chr5_2:2914271-2914290 None:intergenic 15.0%
!!! ATTTATTTTTATAAATGGAG+AGG + chr5_2:2914270-2914289 Msa0749400:intron 15.0%
!! AGATATAGATCTTATAATAT+GGG - chr5_2:2914303-2914322 None:intergenic 15.0%
!! TAATAAAATATGCTTATGAT+AGG + chr5_2:2914327-2914346 Msa0749400:intron 15.0%
!!! CTTTTTTAAATTATGAAATG+TGG + chr5_2:2914840-2914859 Msa0749400:intron 15.0%
!!! AAACTAATTCTAGTTATTTA+TGG + chr5_2:2915139-2915158 Msa0749400:intron 15.0%
!!! TTTTTTTTTTTTGCAGAATT+TGG + chr5_2:2915978-2915997 Msa0749400:intron 15.0%
!! TTTAACCATAATAGATAAAC+AGG - chr5_2:2911519-2911538 None:intergenic 20.0%
!!! CTTTAAGTTAGAATCAATTT+TGG + chr5_2:2911820-2911839 Msa0749400:intron 20.0%
!! TTCAATATGTATAACATAGT+AGG + chr5_2:2912258-2912277 Msa0749400:intron 20.0%
!! AAGTGATGTAAATATTGTAT+TGG + chr5_2:2912489-2912508 Msa0749400:CDS 20.0%
!! GTAAATATTGTATTGGAAAA+TGG + chr5_2:2912496-2912515 Msa0749400:CDS 20.0%
!! ATCTTATATGATTGAGATTA+TGG + chr5_2:2913624-2913643 Msa0749400:intron 20.0%
!! TCTTATATAAGCACAAAATA+AGG + chr5_2:2913695-2913714 Msa0749400:intron 20.0%
!! CCATTTATAAAAATAAATGG+AGG - chr5_2:2914268-2914287 None:intergenic 20.0%
!!! CCTCCATTTATTTTTATAAA+TGG + chr5_2:2914265-2914284 Msa0749400:intron 20.0%
!! CAGATATAGATCTTATAATA+TGG - chr5_2:2914304-2914323 None:intergenic 20.0%
!! TTTGTTGAAAAAATCTTTGA+AGG - chr5_2:2914588-2914607 None:intergenic 20.0%
!! ATTTATTCCTCTGATAATTT+GGG - chr5_2:2914808-2914827 None:intergenic 20.0%
!! AATTTATTCCTCTGATAATT+TGG - chr5_2:2914809-2914828 None:intergenic 20.0%
!!! CAGAGTAATTTTTTGTATTA+GGG + chr5_2:2914875-2914894 Msa0749400:intron 20.0%
!!! AGAGTAATTTTTTGTATTAG+GGG + chr5_2:2914876-2914895 Msa0749400:intron 20.0%
!! TATTTATATCAAACATGCAT+GGG - chr5_2:2914909-2914928 None:intergenic 20.0%
!! ATATTTATATCAAACATGCA+TGG - chr5_2:2914910-2914929 None:intergenic 20.0%
!! ATTCATGATAAATTTAACAC+AGG - chr5_2:2915053-2915072 None:intergenic 20.0%
!!! TTCTAGTTATTTATGGAAAA+AGG + chr5_2:2915146-2915165 Msa0749400:intron 20.0%
!! CACACACAAATTAAAATATA+TGG - chr5_2:2915347-2915366 None:intergenic 20.0%
!!! CTTGTGTATTTATGTTATTT+TGG + chr5_2:2915617-2915636 Msa0749400:intron 20.0%
!! GATTATATAACACTGTTTAT+TGG + chr5_2:2915659-2915678 Msa0749400:intron 20.0%
! ATTATTACAATCTCAGTAAC+TGG + chr5_2:2911154-2911173 Msa0749400:CDS 25.0%
! TGTAACCTGTTTATCTATTA+TGG + chr5_2:2911511-2911530 Msa0749400:intron 25.0%
!!! GTAAAGTTGGTTCAATTTTA+TGG + chr5_2:2911543-2911562 Msa0749400:intron 25.0%
! CGATAGATTTAGTACATATT+TGG + chr5_2:2911656-2911675 Msa0749400:intron 25.0%
! TTAGTACATATTTGGTTATG+TGG + chr5_2:2911664-2911683 Msa0749400:intron 25.0%
!! TAAGTTAGAATCAATTTTGG+AGG + chr5_2:2911823-2911842 Msa0749400:intron 25.0%
!!! AAACATTTTGAGACTATGTT+TGG - chr5_2:2911937-2911956 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG - chr5_2:2912104-2912123 None:intergenic 25.0%
! ATTTAAAGATCTATGAAGCA+CGG - chr5_2:2912198-2912217 None:intergenic 25.0%
!!! ACACTACCTAAGTTTTAAAA+GGG - chr5_2:2913557-2913576 None:intergenic 25.0%
!!! TACACTACCTAAGTTTTAAA+AGG - chr5_2:2913558-2913577 None:intergenic 25.0%
! TCAATCATATAAGATAGCAA+AGG - chr5_2:2913619-2913638 None:intergenic 25.0%
! TTTGCTTATAATTATGAACC+TGG + chr5_2:2913662-2913681 Msa0749400:intron 25.0%
! TGCTTATATAAGAACATTGT+GGG - chr5_2:2913688-2913707 None:intergenic 25.0%
! GAAATGGAGAAAGTTATAAA+TGG - chr5_2:2914146-2914165 None:intergenic 25.0%
! AAGTGATACACACAAAAAAT+AGG - chr5_2:2914233-2914252 None:intergenic 25.0%
! AAGACATGTAATAAAATGGA+AGG - chr5_2:2914415-2914434 None:intergenic 25.0%
! AAGGAAGACATGTAATAAAA+TGG - chr5_2:2914419-2914438 None:intergenic 25.0%
!! AATTTGGTGAAAATACTCTT+TGG + chr5_2:2914704-2914723 Msa0749400:intron 25.0%
!!! GCAGAGTAATTTTTTGTATT+AGG + chr5_2:2914874-2914893 Msa0749400:intron 25.0%
!!! AATTTTTTGTATTAGGGGTT+AGG + chr5_2:2914881-2914900 Msa0749400:intron 25.0%
! ATTTATATCAAACATGCATG+GGG - chr5_2:2914908-2914927 None:intergenic 25.0%
! ATCATGAATTATTTCCTAGA+AGG + chr5_2:2915064-2915083 Msa0749400:intron 25.0%
! TCTTATCTCTACATTTGTAT+TGG + chr5_2:2915584-2915603 Msa0749400:intron 25.0%
!!! GTATTCTTGGTTTTTCTTTT+TGG + chr5_2:2915832-2915851 Msa0749400:intron 25.0%
! ACTTTCTTATCAGTAGAATA+AGG - chr5_2:2915891-2915910 None:intergenic 25.0%
AACAATGAAAGAAAGAGGTT+TGG - chr5_2:2911182-2911201 None:intergenic 30.0%
ATGGTTAAAGTTCGTAAAGT+TGG + chr5_2:2911530-2911549 Msa0749400:intron 30.0%
TGAATCAATTGAATGTGAAG+TGG + chr5_2:2911703-2911722 Msa0749400:intron 30.0%
TACACCTCCATAATTAATTC+AGG + chr5_2:2911894-2911913 Msa0749400:intron 30.0%
TACACCTCCATAATTAATTC+AGG + chr5_2:2911894-2911913 Msa0749400:intron 30.0%
!!! GAACATTTTGAGACTATGTT+TGG - chr5_2:2912035-2912054 None:intergenic 30.0%
CAATCTTTAACTATGAAGCA+CGG + chr5_2:2912055-2912074 Msa0749400:intron 30.0%
GTGCTTCATAGATCTTTAAA+TGG + chr5_2:2912197-2912216 Msa0749400:intron 30.0%
TGTATAACATAGTAGGCTTA+TGG + chr5_2:2912265-2912284 Msa0749400:intron 30.0%
!! TGATACGAGAAGTTGATAAT+GGG + chr5_2:2912328-2912347 Msa0749400:intron 30.0%
!!! CATCGACTTCTTGTTTTTTT+TGG - chr5_2:2912359-2912378 None:intergenic 30.0%
CAAAAAAAACAAGAAGTCGA+TGG + chr5_2:2912357-2912376 Msa0749400:CDS 30.0%
TCATATCAGAATCAGACAAA+TGG - chr5_2:2912450-2912469 None:intergenic 30.0%
GAGAATCGATTATCTAATAC+AGG - chr5_2:2912826-2912845 None:intergenic 30.0%
! TTAGATAATCGATTCTCTGA+TGG + chr5_2:2912829-2912848 Msa0749400:intron 30.0%
!! AGAATTCATTCTGAGATTTC+AGG - chr5_2:2912906-2912925 None:intergenic 30.0%
TACATGATAATAGATTGTGC+AGG - chr5_2:2913495-2913514 None:intergenic 30.0%
TACTCAAACTTCTAATCAAG+TGG + chr5_2:2913513-2913532 Msa0749400:intron 30.0%
ACTCAAACTTCTAATCAAGT+GGG + chr5_2:2913514-2913533 Msa0749400:intron 30.0%
!!! TACCTAAGTTTTAAAAGGGT+GGG - chr5_2:2913553-2913572 None:intergenic 30.0%
GTGCTTATATAAGAACATTG+TGG - chr5_2:2913689-2913708 None:intergenic 30.0%
ATCTCTCAAAATGGAAGAAA+TGG - chr5_2:2914162-2914181 None:intergenic 30.0%
TGTGTCTTTATCTCTCAAAA+TGG - chr5_2:2914171-2914190 None:intergenic 30.0%
ACACACAAAAAATAGGTTGT+GGG - chr5_2:2914226-2914245 None:intergenic 30.0%
TACACACAAAAAATAGGTTG+TGG - chr5_2:2914227-2914246 None:intergenic 30.0%
TGTGTGTATCACTTTCTAAA+TGG + chr5_2:2914239-2914258 Msa0749400:intron 30.0%
!!! TAGTTGCTCTTCTTTTTTCA+AGG + chr5_2:2914452-2914471 Msa0749400:intron 30.0%
! AATTTTGTCCTCCAAAGATT+AGG + chr5_2:2914486-2914505 Msa0749400:intron 30.0%
! ATTTTGTCCTCCAAAGATTA+GGG + chr5_2:2914487-2914506 Msa0749400:intron 30.0%
! AAATCATTAGAGCACTAATG+CGG - chr5_2:2914518-2914537 None:intergenic 30.0%
! TGCTCTAATGATTTTTGCAT+CGG + chr5_2:2914524-2914543 Msa0749400:intron 30.0%
! GAACAACTTTGTGTCTTTTA+AGG + chr5_2:2914678-2914697 Msa0749400:intron 30.0%
!! GTGTCTTTTAAGGACTAATT+TGG + chr5_2:2914688-2914707 Msa0749400:intron 30.0%
GGGACACTTTAATCATTTAA+GGG + chr5_2:2914739-2914758 Msa0749400:intron 30.0%
TATGATACCCAAATTATCAG+AGG + chr5_2:2914798-2914817 Msa0749400:intron 30.0%
!!! TCATTAGTTTTCACCACAAA+CGG - chr5_2:2914959-2914978 None:intergenic 30.0%
!! CTAGAAGGTTGCTTTAAAAT+CGG + chr5_2:2915079-2915098 Msa0749400:intron 30.0%
!! AAAACATTTTGTTAGCCTAG+AGG - chr5_2:2915105-2915124 None:intergenic 30.0%
ACTAAACGCAATATACATAC+AGG - chr5_2:2915420-2915439 None:intergenic 30.0%
CAATTTCTGCGAAAAATATC+TGG - chr5_2:2915541-2915560 None:intergenic 30.0%
! GATATTTTTCGCAGAAATTG+TGG + chr5_2:2915541-2915560 Msa0749400:intron 30.0%
! AAATTTTACAACTCAGATGC+TGG + chr5_2:2915695-2915714 Msa0749400:intron 30.0%
!! TTCTTGGTTTTTCTTTTTGG+AGG + chr5_2:2915835-2915854 Msa0749400:intron 30.0%
! TTTTGTATATAGTTGCACCT+TGG + chr5_2:2915933-2915952 Msa0749400:intron 30.0%
CTTCGAACAATGAAAGAAAG+AGG - chr5_2:2911187-2911206 None:intergenic 35.0%
! TGGATATGTATGCAGCATTT+TGG + chr5_2:2911563-2911582 Msa0749400:intron 35.0%
! TGGAGGTGTAAAATTGATTC+TGG - chr5_2:2911884-2911903 None:intergenic 35.0%
! ACTATGTTTGGTTCCACATT+TGG - chr5_2:2911925-2911944 None:intergenic 35.0%
! TGGAGGTGTAAAATTGATTC+TGG - chr5_2:2911884-2911903 None:intergenic 35.0%
! ACTATGTTTGGTTCCACATT+TGG - chr5_2:2911925-2911944 None:intergenic 35.0%
CGTGCTTCATAGTTAAAGAT+TGG - chr5_2:2912057-2912076 None:intergenic 35.0%
ATAGTAGGCTTATGGCTATT+GGG + chr5_2:2912273-2912292 Msa0749400:intron 35.0%
!! GTGATACGAGAAGTTGATAA+TGG + chr5_2:2912327-2912346 Msa0749400:intron 35.0%
!! GATACGAGAAGTTGATAATG+GGG + chr5_2:2912329-2912348 Msa0749400:intron 35.0%
! GAATCAGACAAATGGTTTTC+AGG - chr5_2:2912442-2912461 None:intergenic 35.0%
ATTCTGATATGAACCAGCAA+AGG + chr5_2:2912458-2912477 Msa0749400:CDS 35.0%
TTGGAAAATGGCTTATCTGA+TGG + chr5_2:2912508-2912527 Msa0749400:CDS 35.0%
ACAAGATTCATGTAAACCAG+AGG + chr5_2:2912660-2912679 Msa0749400:CDS 35.0%
ATGAATCAGCAAAGCAAAGA+TGG + chr5_2:2912787-2912806 Msa0749400:CDS 35.0%
ATTCTTGAAATCCCAGATTG+AGG + chr5_2:2912921-2912940 Msa0749400:CDS 35.0%
TTCTTGAAATCCCAGATTGA+GGG + chr5_2:2912922-2912941 Msa0749400:CDS 35.0%
TCCAGTATACAGAAAGAAGT+TGG + chr5_2:2912967-2912986 Msa0749400:CDS 35.0%
ACCAACTTCTTTCTGTATAC+TGG - chr5_2:2912971-2912990 None:intergenic 35.0%
AGTATACAGAAAGAAGTTGG+TGG + chr5_2:2912970-2912989 Msa0749400:CDS 35.0%
TTGTGAAAGAACTTCGAGAA+AGG + chr5_2:2913016-2913035 Msa0749400:CDS 35.0%
AACACGATGCATTCATTCAA+AGG - chr5_2:2913261-2913280 None:intergenic 35.0%
! AACTTGATGCCAAGTTGAAT+AGG + chr5_2:2913348-2913367 Msa0749400:CDS 35.0%
TTTGTGAAGCCTATTCAACT+TGG - chr5_2:2913360-2913379 None:intergenic 35.0%
AGTTGAATAGGCTTCACAAA+AGG + chr5_2:2913360-2913379 Msa0749400:CDS 35.0%
GTTGAATAGGCTTCACAAAA+GGG + chr5_2:2913361-2913380 Msa0749400:CDS 35.0%
ACGCATTCAAGAAGTTCAAA+AGG + chr5_2:2913391-2913410 Msa0749400:CDS 35.0%
ACATCAAAAGATTAACGAGC+AGG - chr5_2:2913439-2913458 None:intergenic 35.0%
!!! ACCTAAGTTTTAAAAGGGTG+GGG - chr5_2:2913552-2913571 None:intergenic 35.0%
!!! CTACCTAAGTTTTAAAAGGG+TGG - chr5_2:2913554-2913573 None:intergenic 35.0%
ACTCGCACAAACTAATAATG+TGG - chr5_2:2913582-2913601 None:intergenic 35.0%
CATATAAGATAGCAAAGGTG+AGG - chr5_2:2913614-2913633 None:intergenic 35.0%
! CCTCAGTAAATTGCTTTAAG+AGG - chr5_2:2913748-2913767 None:intergenic 35.0%
CCTCTTAAAGCAATTTACTG+AGG + chr5_2:2913745-2913764 Msa0749400:intron 35.0%
! AATTTACTGAGGCACTTAAC+TGG + chr5_2:2913756-2913775 Msa0749400:intron 35.0%
!!! GAGTTCATTTTTTCATTCGC+AGG + chr5_2:2913804-2913823 Msa0749400:intron 35.0%
AACAAGGAAACAAGCAAATG+AGG + chr5_2:2913921-2913940 Msa0749400:CDS 35.0%
GGAGAAAGTTATAAATGGAG+AGG - chr5_2:2914141-2914160 None:intergenic 35.0%
TTACAGTGCAAATAACCGTA+AGG - chr5_2:2914366-2914385 None:intergenic 35.0%
TTACGGTTATTTGCACTGTA+AGG + chr5_2:2914365-2914384 Msa0749400:intron 35.0%
TACGGTTATTTGCACTGTAA+GGG + chr5_2:2914366-2914385 Msa0749400:intron 35.0%
CAACTAGTTACACACGAATA+AGG - chr5_2:2914438-2914457 None:intergenic 35.0%
! TCTTTGGAGGACAAAATTGA+TGG - chr5_2:2914484-2914503 None:intergenic 35.0%
! CACTTACAACTACGTTTTTG+AGG - chr5_2:2914617-2914636 None:intergenic 35.0%
CTCAAAAACGTAGTTGTAAG+TGG + chr5_2:2914615-2914634 Msa0749400:intron 35.0%
! TGATTAAAGTGTCCCCATAT+CGG - chr5_2:2914734-2914753 None:intergenic 35.0%
GGGGACACTTTAATCATTTA+AGG + chr5_2:2914738-2914757 Msa0749400:intron 35.0%
!!! CATTAGTTTTCACCACAAAC+GGG - chr5_2:2914958-2914977 None:intergenic 35.0%
!!! CGATTTTAAAGCAACCTTCT+AGG - chr5_2:2915081-2915100 None:intergenic 35.0%
GAGATACCATTGAGGATTTA+CGG + chr5_2:2915240-2915259 Msa0749400:CDS 35.0%
GTTTAGTATTTCCGTCTTAC+TGG + chr5_2:2915433-2915452 Msa0749400:intron 35.0%
ATAACCAGTTACCAGTAAGA+CGG - chr5_2:2915447-2915466 None:intergenic 35.0%
AACTCATGTCTTGTATCTTG+TGG + chr5_2:2915467-2915486 Msa0749400:intron 35.0%
TGTATCTTATCATCTTTGCC+TGG + chr5_2:2915807-2915826 Msa0749400:intron 35.0%
TTTGCAGAATTTGGAGAGTT+TGG + chr5_2:2915987-2916006 Msa0749400:intron 35.0%
GAACTACAAACGTAACGAGA+CGG + chr5_2:2911210-2911229 Msa0749400:CDS 40.0%
CTGGACTGAACATTCCTAAA+CGG + chr5_2:2911236-2911255 Msa0749400:CDS 40.0%
GTGGCCTGAATTAATTATGG+AGG - chr5_2:2911901-2911920 None:intergenic 40.0%
GGAGTGGCCTGAATTAATTA+TGG - chr5_2:2911904-2911923 None:intergenic 40.0%
GTGGCCTGAATTAATTATGG+AGG - chr5_2:2911901-2911920 None:intergenic 40.0%
GGAGTGGCCTGAATTAATTA+TGG - chr5_2:2911904-2911923 None:intergenic 40.0%
CATAGTAGGCTTATGGCTAT+TGG + chr5_2:2912272-2912291 Msa0749400:intron 40.0%
!!! CAAATGGTTTTCAGGTCTAG+AGG - chr5_2:2912434-2912453 None:intergenic 40.0%
TGATATGAACCAGCAAAGGA+AGG + chr5_2:2912462-2912481 Msa0749400:CDS 40.0%
GGCTTATCTGATGGAAATGA+AGG + chr5_2:2912517-2912536 Msa0749400:CDS 40.0%
ATCTGATGGAAATGAAGGTC+CGG + chr5_2:2912522-2912541 Msa0749400:CDS 40.0%
CATTTGTCAGATGGAAACGA+AGG + chr5_2:2912601-2912620 Msa0749400:intron 40.0%
ACAAGATTCGTCAAAACCTG+AGG + chr5_2:2912744-2912763 Msa0749400:CDS 40.0%
CGATTCTCTGATGGAAATGA+AGG + chr5_2:2912838-2912857 Msa0749400:intron 40.0%
CTCTGATGGAAATGAAGGTT+TGG + chr5_2:2912843-2912862 Msa0749400:intron 40.0%
TCTTGAAATCCCAGATTGAG+GGG + chr5_2:2912923-2912942 Msa0749400:CDS 40.0%
ATTGCTAAACCCCTCAATCT+GGG - chr5_2:2912935-2912954 None:intergenic 40.0%
!! ACAGAAAGAAGTTGGTGGTA+CGG + chr5_2:2912975-2912994 Msa0749400:CDS 40.0%
! AAGGTGCTTCAAAGCTTCTT+CGG - chr5_2:2913094-2913113 None:intergenic 40.0%
CATCTGAGTACGCAATTTGA+AGG - chr5_2:2913113-2913132 None:intergenic 40.0%
GTGTGTAGCTCAAAATAAGC+TGG + chr5_2:2913289-2913308 Msa0749400:intron 40.0%
!!! CCTAAGTTTTAAAAGGGTGG+GGG - chr5_2:2913551-2913570 None:intergenic 40.0%
ATATAAGAACATTGTGGGCC+AGG - chr5_2:2913683-2913702 None:intergenic 40.0%
CTCAGCAGATTCGTTTAACT+CGG - chr5_2:2913857-2913876 None:intergenic 40.0%
! TTGTTGCAATGCTGACTGTT+GGG - chr5_2:2913890-2913909 None:intergenic 40.0%
AACAAGAGTTAGAGCGAACA+AGG + chr5_2:2913905-2913924 Msa0749400:CDS 40.0%
TGCAAATAACCGTAAGGCTT+GGG - chr5_2:2914360-2914379 None:intergenic 40.0%
! GGAGGACAAAATTGATGGTA+TGG - chr5_2:2914479-2914498 None:intergenic 40.0%
CATTAAAAGCCTGAGACGAA+AGG + chr5_2:2914645-2914664 Msa0749400:intron 40.0%
TGAATTTGTCCTTTCGTCTC+AGG - chr5_2:2914657-2914676 None:intergenic 40.0%
TGAGACGAAAGGACAAATTC+AGG + chr5_2:2914656-2914675 Msa0749400:intron 40.0%
! TACTCTTTGGAAGACCGATA+TGG + chr5_2:2914717-2914736 Msa0749400:intron 40.0%
! ACTCTTTGGAAGACCGATAT+GGG + chr5_2:2914718-2914737 Msa0749400:intron 40.0%
! ATTCTCTTTTCTCCCGTTTG+TGG + chr5_2:2914943-2914962 Msa0749400:intron 40.0%
! GATTTTGCTCCAAGATAGCA+CGG + chr5_2:2914977-2914996 Msa0749400:intron 40.0%
AGCTCAGTCAGTTGAAATCA+GGG - chr5_2:2915007-2915026 None:intergenic 40.0%
TAGCTCAGTCAGTTGAAATC+AGG - chr5_2:2915008-2915027 None:intergenic 40.0%
TTCAACTGACTGAGCTATGT+AGG + chr5_2:2915011-2915030 Msa0749400:intron 40.0%
!! TTGCTTTAAAATCGGCCTCT+AGG + chr5_2:2915087-2915106 Msa0749400:intron 40.0%
TCAATGGTATCTCGAAGTCT+GGG - chr5_2:2915233-2915252 None:intergenic 40.0%
TTCATTGCAACCTAAAGAGG+AGG + chr5_2:2915265-2915284 Msa0749400:CDS 40.0%
! GCAATTGTCACTTGCAGAAA+AGG + chr5_2:2915301-2915320 Msa0749400:CDS 40.0%
ATTTCCGTCTTACTGGTAAC+TGG + chr5_2:2915440-2915459 Msa0749400:intron 40.0%
GCTCTCTGCTAAACATCAAA+AGG + chr5_2:2915776-2915795 Msa0749400:CDS 40.0%
GAAAAACCAAGAATACAGCC+AGG - chr5_2:2915828-2915847 None:intergenic 40.0%
CGAACATTGAATTGAAGCCA+AGG - chr5_2:2915953-2915972 None:intergenic 40.0%
TCAATGATGCTGTATCCGAT+AGG + chr5_2:2916019-2916038 Msa0749400:CDS 40.0%
CGGATGTTAAGGGGAGAAAA+CGG - chr5_2:2911264-2911283 None:intergenic 45.0%
TGTATTGCACGAGTATGAGG+AGG - chr5_2:2911351-2911370 None:intergenic 45.0%
CCTTGTATTGCACGAGTATG+AGG - chr5_2:2911354-2911373 None:intergenic 45.0%
CCTCATACTCGTGCAATACA+AGG + chr5_2:2911351-2911370 Msa0749400:CDS 45.0%
AATTCAGGCCACTCCAAATG+TGG + chr5_2:2911909-2911928 Msa0749400:intron 45.0%
! GTTTGGTTCCACATTTGGAG+TGG - chr5_2:2911920-2911939 None:intergenic 45.0%
AATTCAGGCCACTCCAAATG+TGG + chr5_2:2911909-2911928 Msa0749400:intron 45.0%
! GTTTGGTTCCACATTTGGAG+TGG - chr5_2:2911920-2911939 None:intergenic 45.0%
ATGAAGCACGGATACTGACA+CGG + chr5_2:2912067-2912086 Msa0749400:intron 45.0%
TGTTGAATTGCAGCTTGTGC+TGG + chr5_2:2912296-2912315 Msa0749400:intron 45.0%
AACAAGAAGTCGATGGCATC+TGG + chr5_2:2912364-2912383 Msa0749400:CDS 45.0%
AGGTGATACTGGTGGAAAGA+TGG + chr5_2:2912390-2912409 Msa0749400:CDS 45.0%
CACTTTCATCCTTCCTTTGC+TGG - chr5_2:2912474-2912493 None:intergenic 45.0%
ACAAGATTCGTCTAAACCCG+AGG + chr5_2:2912576-2912595 Msa0749400:intron 45.0%
TCCATCTGACAAATGCTCCT+CGG - chr5_2:2912596-2912615 None:intergenic 45.0%
ATCGTTCCACCAGTATCAGT+CGG - chr5_2:2912628-2912647 None:intergenic 45.0%
GTCAGATGGAAACGAAGTTC+TGG + chr5_2:2912690-2912709 Msa0749400:CDS 45.0%
! AACGAAGTTCTGGCTGATAC+TGG + chr5_2:2912700-2912719 Msa0749400:CDS 45.0%
GAATCAGACAAATGCTCCTC+AGG - chr5_2:2912763-2912782 None:intergenic 45.0%
TCACGATGAGCTTCTGCAAA+TGG + chr5_2:2912873-2912892 Msa0749400:CDS 45.0%
CATTGCTAAACCCCTCAATC+TGG - chr5_2:2912936-2912955 None:intergenic 45.0%
AGGGGTTTAGCAATGTTGAG+AGG + chr5_2:2912941-2912960 Msa0749400:intron 45.0%
GGGGTTTAGCAATGTTGAGA+GGG + chr5_2:2912942-2912961 Msa0749400:intron 45.0%
AGCTTCTTCGGATGCAATTC+TGG - chr5_2:2913082-2913101 None:intergenic 45.0%
GTACTCAGATGCAGAAGCAA+AGG + chr5_2:2913122-2913141 Msa0749400:CDS 45.0%
AAGCTGCTCAGAGAGATCTT+TGG - chr5_2:2913148-2913167 None:intergenic 45.0%
GGTTATGTTTGTGCGCATAG+TGG + chr5_2:2913179-2913198 Msa0749400:intron 45.0%
GTGCAGGTAGCATTACTTCA+AGG - chr5_2:2913479-2913498 None:intergenic 45.0%
!!! CCCCCACCCTTTTAAAACTT+AGG + chr5_2:2913548-2913567 Msa0749400:intron 45.0%
GCAGGAAAAAGACGATCTTG+AGG + chr5_2:2913822-2913841 Msa0749400:intron 45.0%
! CTTGTTGCAATGCTGACTGT+TGG - chr5_2:2913891-2913910 None:intergenic 45.0%
!! AAATGAGGCGTTGAAAGCCA+TGG + chr5_2:2913936-2913955 Msa0749400:CDS 45.0%
TGAAAGCCATGGATGGTGAT+AGG + chr5_2:2913947-2913966 Msa0749400:CDS 45.0%
TTGTTGCCTATCACCATCCA+TGG - chr5_2:2913956-2913975 None:intergenic 45.0%
CTGAAGATGCGCACATTTCT+AGG - chr5_2:2914062-2914081 None:intergenic 45.0%
CTAGAAATGTGCGCATCTTC+AGG + chr5_2:2914060-2914079 Msa0749400:intron 45.0%
GCAAATAACCGTAAGGCTTG+GGG - chr5_2:2914359-2914378 None:intergenic 45.0%
GTGCAAATAACCGTAAGGCT+TGG - chr5_2:2914361-2914380 None:intergenic 45.0%
! CTCTTTGGAAGACCGATATG+GGG + chr5_2:2914719-2914738 Msa0749400:intron 45.0%
GCTCAGTCAGTTGAAATCAG+GGG - chr5_2:2915006-2915025 None:intergenic 45.0%
CTCAATGGTATCTCGAAGTC+TGG - chr5_2:2915234-2915253 None:intergenic 45.0%
CAGACTTCGAGATACCATTG+AGG + chr5_2:2915232-2915251 Msa0749400:intron 45.0%
TGAACGCCGTAAATCCTCAA+TGG - chr5_2:2915249-2915268 None:intergenic 45.0%
GCGTTCATTGCAACCTAAAG+AGG + chr5_2:2915262-2915281 Msa0749400:CDS 45.0%
GTCACTTGCAGAAAAGGAAC+AGG + chr5_2:2915307-2915326 Msa0749400:CDS 45.0%
CAGATGCTGGAAGATATGAG+AGG + chr5_2:2915708-2915727 Msa0749400:intron 45.0%
TTCGAACTGCCGAGGAAAAA+AGG + chr5_2:2915736-2915755 Msa0749400:CDS 45.0%
!!! TGCAGCTTGCCTTTTTTCCT+CGG - chr5_2:2915748-2915767 None:intergenic 45.0%
TCTTTGCCTGGCTGTATTCT+TGG + chr5_2:2915819-2915838 Msa0749400:intron 45.0%
GCAGAATTTGGAGAGTTTGG+AGG + chr5_2:2915990-2916009 Msa0749400:intron 45.0%
TGCTGTATCCGATAGGAGAA+AGG + chr5_2:2916026-2916045 Msa0749400:CDS 45.0%
! CTGCAGTGAAGAAATGGACT+CGG - chr5_2:2916055-2916074 None:intergenic 45.0%
!! AATTTAAATTTATTAATGTT+TGG + chr5_2:2911601-2911620 Msa0749400:intron 5.0%
AAACGTAACGAGACGGTGAC+TGG + chr5_2:2911217-2911236 Msa0749400:CDS 50.0%
ACCTATGCGTGTCCGACAAT+GGG + chr5_2:2912164-2912183 Msa0749400:intron 50.0%
AAGTCGATGGCATCTGGTGA+AGG + chr5_2:2912370-2912389 Msa0749400:CDS 50.0%
GCATCTGGTGAAGGTGATAC+TGG + chr5_2:2912379-2912398 Msa0749400:CDS 50.0%
TCTGGTGAAGGTGATACTGG+TGG + chr5_2:2912382-2912401 Msa0749400:CDS 50.0%
AATGAAGGTCCGGCTGATAC+TGG + chr5_2:2912532-2912551 Msa0749400:CDS 50.0%
ACAGTTCCACCAGTATCAGC+CGG - chr5_2:2912544-2912563 None:intergenic 50.0%
CCATCTGACAAATGCTCCTC+GGG - chr5_2:2912595-2912614 None:intergenic 50.0%
AACGAAGGTCCGACTGATAC+TGG + chr5_2:2912616-2912635 Msa0749400:intron 50.0%
GACTGATACTGGTGGAACGA+TGG + chr5_2:2912627-2912646 Msa0749400:CDS 50.0%
CCATCTGACAAATGCTCCTC+TGG - chr5_2:2912595-2912614 None:intergenic 50.0%
!! CCAGAGGAGCATTTGTCAGA+TGG + chr5_2:2912676-2912695 Msa0749400:CDS 50.0%
! GAAGTTCTGGCTGATACTGG+TGG + chr5_2:2912703-2912722 Msa0749400:CDS 50.0%
!! GAAGTTGGTGGTACGGAAGA+CGG + chr5_2:2912982-2913001 Msa0749400:CDS 50.0%
!! AAGTTGGTGGTACGGAAGAC+GGG + chr5_2:2912983-2913002 Msa0749400:CDS 50.0%
CTCTCTGAGCAGCTTGTAGA+AGG + chr5_2:2913153-2913172 Msa0749400:CDS 50.0%
TGAGCAGCTTGTAGAAGGTG+TGG + chr5_2:2913158-2913177 Msa0749400:intron 50.0%
AAAGGGTGGGGGAGTTTAAG+TGG - chr5_2:2913540-2913559 None:intergenic 50.0%
TGCGCATCTTCAGGTGTTTC+AGG + chr5_2:2914069-2914088 Msa0749400:intron 50.0%
GGAGTTTACCCCAAGCCTTA+CGG + chr5_2:2914348-2914367 Msa0749400:intron 50.0%
GGTGACACCCTAATCTTTGG+AGG - chr5_2:2914497-2914516 None:intergenic 50.0%
TGCGGTGACACCCTAATCTT+TGG - chr5_2:2914500-2914519 None:intergenic 50.0%
GACTCAAGAGCCTCCTCTTT+AGG - chr5_2:2915278-2915297 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + chr5_2:2915359-2915378 Msa0749400:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + chr5_2:2915360-2915379 Msa0749400:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG + chr5_2:2915359-2915378 Msa0749400:intron 50.0%
!! GGGAGAAAACGGTGCCGTTT+AGG - chr5_2:2911253-2911272 None:intergenic 55.0%
! AAATGGATCTGAAGCCGCGG+CGG - chr5_2:2911284-2911303 None:intergenic 55.0%
! GCGAAATGGATCTGAAGCCG+CGG - chr5_2:2911287-2911306 None:intergenic 55.0%
CACGAGTATGAGGAGGAAGC+GGG - chr5_2:2911344-2911363 None:intergenic 55.0%
GCACGAGTATGAGGAGGAAG+CGG - chr5_2:2911345-2911364 None:intergenic 55.0%
CACGGATACTGACACGGACA+CGG + chr5_2:2912073-2912092 Msa0749400:intron 55.0%
ACGGATACTGACACGGACAC+GGG + chr5_2:2912074-2912093 Msa0749400:intron 55.0%
CACCTATGCGTGTCCGACAA+TGG + chr5_2:2912163-2912182 Msa0749400:intron 55.0%
TCCCATTGTCGGACACGCAT+AGG - chr5_2:2912168-2912187 None:intergenic 55.0%
ACGGACACGTGTCCCATTGT+CGG - chr5_2:2912179-2912198 None:intergenic 55.0%
GGCTGATACTGGTGGAACTG+TGG + chr5_2:2912543-2912562 Msa0749400:intron 55.0%
!! CCCGAGGAGCATTTGTCAGA+TGG + chr5_2:2912592-2912611 Msa0749400:intron 55.0%
GAAGGTCCGACTGATACTGG+TGG + chr5_2:2912619-2912638 Msa0749400:intron 55.0%
GGCTGATACTGGTGGAACGA+TGG + chr5_2:2912711-2912730 Msa0749400:CDS 55.0%
!! AGTTGGTGGTACGGAAGACG+GGG + chr5_2:2912984-2913003 Msa0749400:CDS 55.0%
!! GAGGCGTTGAAAGCCATGGA+TGG + chr5_2:2913940-2913959 Msa0749400:CDS 55.0%
CAGGGGTTACCGTGCTATCT+TGG - chr5_2:2914989-2915008 None:intergenic 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG + chr5_2:2915364-2915383 Msa0749400:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+GGG + chr5_2:2915365-2915384 Msa0749400:intron 55.0%
AGGATTGCTTCGAACTGCCG+AGG + chr5_2:2915728-2915747 Msa0749400:CDS 55.0%
CTCGGCTGCCTTTCTCCTAT+CGG - chr5_2:2916037-2916056 None:intergenic 55.0%
TCTCCCCTTAACATCCGCCG+CGG + chr5_2:2911267-2911286 Msa0749400:CDS 60.0%
AAGCCGCGGCGGATGTTAAG+GGG - chr5_2:2911273-2911292 None:intergenic 60.0%
GAAGCCGCGGCGGATGTTAA+GGG - chr5_2:2911274-2911293 None:intergenic 60.0%
TGAAGCCGCGGCGGATGTTA+AGG - chr5_2:2911275-2911294 None:intergenic 60.0%
GATCCATTTCGCCACCGTGC+CGG + chr5_2:2911295-2911314 Msa0749400:CDS 60.0%
GCTGATGAAGGCGAGATCGC+CGG - chr5_2:2911317-2911336 None:intergenic 60.0%
GGCGATCTCGCCTTCATCAG+CGG + chr5_2:2911316-2911335 Msa0749400:CDS 60.0%
GAAGCGGGAACCGCTGATGA+AGG - chr5_2:2911329-2911348 None:intergenic 60.0%
GAAGGTCCGGCTGATACTGG+TGG + chr5_2:2912535-2912554 Msa0749400:intron 60.0%
GTGTGTGTGTGTGTGTGGGG+GGG + chr5_2:2915366-2915385 Msa0749400:intron 60.0%
TGTGTGTGTGTGTGTGGGGG+GGG + chr5_2:2915367-2915386 Msa0749400:intron 60.0%
TGAAGGCGAGATCGCCGGCA+CGG - chr5_2:2911312-2911331 None:intergenic 65.0%
GTGTGTGTGTGTGTGGGGGG+GGG + chr5_2:2915368-2915387 Msa0749400:intron 65.0%
TGTGTGTGTGTGTGGGGGGG+GGG + chr5_2:2915369-2915388 Msa0749400:intron 65.0%
TCGCCGGCACGGTGGCGAAA+TGG - chr5_2:2911301-2911320 None:intergenic 70.0%
GTGTGTGTGTGTGGGGGGGG+GGG + chr5_2:2915370-2915389 Msa0749400:intron 70.0%
TGTGTGTGTGTGGGGGGGGG+GGG + chr5_2:2915371-2915390 Msa0749400:intron 70.0%
AGGCGAGATCGCCGGCACGG+TGG - chr5_2:2911309-2911328 None:intergenic 75.0%
GTGTGTGTGTGGGGGGGGGG+GGG + chr5_2:2915372-2915391 Msa0749400:intron 75.0%
TGTGTGTGTGGGGGGGGGGG+GGG + chr5_2:2915373-2915392 Msa0749400:intron 75.0%
! GTGTGTGTGGGGGGGGGGGG+GGG + chr5_2:2915374-2915393 Msa0749400:intron 80.0%
! GTGTGGGGGGGGGGGGGGGA+TGG + chr5_2:2915378-2915397 Msa0749400:intron 85.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 2911151 2916074 2911151 ID=Msa0749400;Name=Msa0749400
chr5_2 mRNA 2911151 2916074 2911151 ID=Msa0749400-mRNA-1;Parent=Msa0749400;Name=Msa0749400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.6|0.36|1|0.5|0.54|11|0|497
chr5_2 exon 2911151 2911372 2911151 ID=Msa0749400-mRNA-1:exon:936;Parent=Msa0749400-mRNA-1
chr5_2 exon 2912309 2912317 2912309 ID=Msa0749400-mRNA-1:exon:937;Parent=Msa0749400-mRNA-1
chr5_2 exon 2912340 2912553 2912340 ID=Msa0749400-mRNA-1:exon:938;Parent=Msa0749400-mRNA-1
chr5_2 exon 2912623 2912811 2912623 ID=Msa0749400-mRNA-1:exon:939;Parent=Msa0749400-mRNA-1
chr5_2 exon 2912860 2912944 2912860 ID=Msa0749400-mRNA-1:exon:940;Parent=Msa0749400-mRNA-1
chr5_2 exon 2912951 2913174 2912951 ID=Msa0749400-mRNA-1:exon:941;Parent=Msa0749400-mRNA-1
chr5_2 exon 2913297 2913412 2913297 ID=Msa0749400-mRNA-1:exon:942;Parent=Msa0749400-mRNA-1
chr5_2 exon 2913826 2913995 2913826 ID=Msa0749400-mRNA-1:exon:943;Parent=Msa0749400-mRNA-1
chr5_2 exon 2915235 2915328 2915235 ID=Msa0749400-mRNA-1:exon:944;Parent=Msa0749400-mRNA-1
chr5_2 exon 2915711 2915797 2915711 ID=Msa0749400-mRNA-1:exon:945;Parent=Msa0749400-mRNA-1
chr5_2 exon 2915994 2916074 2915994 ID=Msa0749400-mRNA-1:exon:946;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2911151 2911372 2911151 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2912309 2912317 2912309 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2912340 2912553 2912340 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2912623 2912811 2912623 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2912860 2912944 2912860 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2912951 2913174 2912951 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2913297 2913412 2913297 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2913826 2913995 2913826 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2915235 2915328 2915235 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2915711 2915797 2915711 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
chr5_2 CDS 2915994 2916074 2915994 ID=Msa0749400-mRNA-1:cds;Parent=Msa0749400-mRNA-1
Gene Sequence

>Msa0749400

CAAATTATTACAATCTCAGTAACTGGATCCAAACCTCTTTCTTTCATTGTTCGAAGTTCGAACTACAAACGTAACGAGACGGTGACTGGACTGAACATTCCTAAACGGCACCGTTTTCTCCCCTTAACATCCGCCGCGGCTTCAGATCCATTTCGCCACCGTGCCGGCGATCTCGCCTTCATCAGCGGTTCCCGCTTCCTCCTCATACTCGTGCAATACAAGCTTGTGCTGTTGATAATGGGGCGTTCCAAAAAAAACAAGAAGTCGATGGCATCTGGTGAAGGTGATACTGGTGGAAAGATGGAGATACGCGCAGAAGATTCCTCTAGACCTGAAAACCATTTGTCTGATTCTGATATGAACCAGCAAAGGAAGGATGAAAGTGATGTAAATATTGTATTGGAAAATGGCTTATCTGATGGAAATGAAGGTCCGGCTGATACTGGTCCGACTGATACTGGTGGAACGATGGATATTCACGCACAAGATTCATGTAAACCAGAGGAGCATTTGTCAGATGGAAACGAAGTTCTGGCTGATACTGGTGGAACGATGGAGATTCACGCACAAGATTCGTCAAAACCTGAGGAGCATTTGTCTGATTCTGATATGAATCAGCAAAGCAAAGATGGAAGTTTGGCTGATACTCACGATGAGCTTCTGCAAATGGTTGTTGACCTGAAATCTCAGAATGAATTCTTGAAATCCCAGATTGAGGGCAATGTTGAGAGGGAATCCAGTATACAGAAAGAAGTTGGTGGTACGGAAGACGGGGAATCTGACATTGTGAAAGAACTTCGAGAAAGGATAGAATTATTGAATAAAGAATTTCTGATAGAAAAACAAACCAGAATTGCATCCGAAGAAGCTTTGAAGCACCTTCAAATTGCGTACTCAGATGCAGAAGCAAAGGCCAAAGATCTCTCTGAGCAGCTTGTAGAAGCTCAAAATAAGCTGGAACATGAAATAAAAGAACGTGATGAGAAGTACTCTGAACTTGATGCCAAGTTGAATAGGCTTCACAAAAGGGCAAAACAACGCATTCAAGAAGTTCAAAAGGAAAAAGACGATCTTGAGGCACAATTCTCCGAGTTAAACGAATCTGCTGAGCGAGCATCATCCCAACAGTCAGCATTGCAACAAGAGTTAGAGCGAACAAGGAAACAAGCAAATGAGGCGTTGAAAGCCATGGATGGTGATAGGCAACAATTAAGAAGTGCAAACAACAAACTTCGAGATACCATTGAGGATTTACGGCGTTCATTGCAACCTAAAGAGGAGGCTCTTGAGTCATTGCAATTGTCACTTGCAGAAAAGGAACAGATGCTGGAAGATATGAGAGGATTGCTTCGAACTGCCGAGGAAAAAAGGCAAGCTGCACTAGCTGAGCTCTCTGCTAAACATCAAAAGAATTTGGAGAGTTTGGAGGCTCAACTCAATGATGCTGTATCCGATAGGAGAAAGGCAGCCGAGTCCATTTCTTCACTGCAG

Protein sequence

>Msa0749400

QIITISVTGSKPLSFIVRSSNYKRNETVTGLNIPKRHRFLPLTSAAASDPFRHRAGDLAFISGSRFLLILVQYKLVLLIMGRSKKNKKSMASGEGDTGGKMEIRAEDSSRPENHLSDSDMNQQRKDESDVNIVLENGLSDGNEGPADTGPTDTGGTMDIHAQDSCKPEEHLSDGNEVLADTGGTMEIHAQDSSKPEEHLSDSDMNQQSKDGSLADTHDELLQMVVDLKSQNEFLKSQIEGNVERESSIQKEVGGTEDGESDIVKELRERIELLNKEFLIEKQTRIASEEALKHLQIAYSDAEAKAKDLSEQLVEAQNKLEHEIKERDEKYSELDAKLNRLHKRAKQRIQEVQKEKDDLEAQFSELNESAERASSQQSALQQELERTRKQANEALKAMDGDRQQLRSANNKLRDTIEDLRRSLQPKEEALESLQLSLAEKEQMLEDMRGLLRTAEEKRQAALAELSAKHQKNLESLEAQLNDAVSDRRKAAESISSLQ