AlfalfaGEDB | Msa0663250

M. sativa cultivar zhongmu-4 / Msa0663250

KEGG: K10406
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
PFAM: PF16796.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663250	XP_024640352.1	72.585	383	68	5	205	555	366	743	0.0	553

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663250	sp\|B9FAF3\|KN14E_ORYSJ	63.708	383	102	5	205	555	373	750	5.00e-158	482

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663250	G7KGK0	72.585	383	68	5	205	555	365	742	0.0	553

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0663250	0.805639	1.211170e-49	-8.615850e-47
Msa0006390	Msa0663250	0.800503	1.397738e-48	-8.615850e-47
Msa0008220	Msa0663250	0.810444	1.149120e-50	-8.615850e-47
Msa0014570	Msa0663250	0.802219	6.224967e-49	-8.615850e-47
Msa0014710	Msa0663250	0.836331	9.961945e-57	-8.615850e-47
Msa0015120	Msa0663250	0.811889	5.586257e-51	-8.615850e-47
Msa0021540	Msa0663250	0.807705	4.435651e-50	-8.615850e-47
Msa0026910	Msa0663250	0.814410	1.562578e-51	-8.615850e-47
Msa0027390	Msa0663250	0.817103	3.922688e-52	-8.615850e-47
Msa0028550	Msa0663250	0.803269	3.778521e-49	-8.615850e-47

Showing 1 to 10 of 397 entries

Previous1 2 3 4 5…40Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663250	MtrunA17_Chr5g0411971	72.585	383	68	5	205	555	365	742	0.0	553
Msa0663250	MtrunA17_Chr5g0421591	71.802	383	71	5	205	555	340	717	0.0	549
Msa0663250	MtrunA17_Chr5g0421521	71.540	383	72	5	205	555	340	717	0.0	546
Msa0663250	MtrunA17_Chr2g0312631	50.698	430	149	9	185	554	303	729	2.45e-128	400
Msa0663250	MtrunA17_Chr1g0191851	50.498	402	157	7	190	555	97	492	5.14e-119	369
Msa0663250	MtrunA17_Chr7g0272871	49.742	388	154	7	202	554	90	471	1.52e-111	348
Msa0663250	MtrunA17_Chr1g0195111	39.952	418	196	9	189	556	333	745	5.11e-82	276
Msa0663250	MtrunA17_Chr1g0192481	39.286	392	189	7	190	537	3	389	4.08e-78	257
Msa0663250	MtrunA17_Chr7g0271961	38.498	426	206	10	176	556	331	745	3.71e-77	263
Msa0663250	MtrunA17_Chr7g0257301	40.506	395	162	9	227	555	377	764	1.10e-73	253

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0663250	AT2G22610.2	61.518	382	112	4	205	555	383	760	1.68e-153	467
Msa0663250	AT2G22610.1	61.518	382	112	4	205	555	383	760	1.89e-153	468
Msa0663250	AT2G22610.3	61.518	382	112	4	205	555	384	761	2.04e-153	468
Msa0663250	AT1G72250.1	52.300	413	146	7	190	555	430	838	1.26e-126	400
Msa0663250	AT1G72250.2	52.300	413	146	7	190	555	439	847	1.39e-126	400
Msa0663250	AT1G72250.4	52.300	413	146	7	190	555	450	858	1.90e-126	400
Msa0663250	AT1G72250.3	52.300	413	146	7	190	555	451	859	1.93e-126	400
Msa0663250	AT5G27550.2	53.056	360	135	4	228	554	118	476	1.41e-116	363
Msa0663250	AT5G27550.1	53.056	360	135	4	228	554	118	476	1.41e-116	363
Msa0663250	AT1G09170.4	40.741	432	200	8	168	556	364	782	8.76e-89	292

Showing 1 to 10 of 157 entries

Previous1 2 3 4 5…16Next

Find 175 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATGGACCTAATTCTTT+TGG	0.277801	4_4:-1949287	None:intergenic
AACGAGGCTGCAGATGGTGG+TGG	0.566131	4_4:+1949148	Msa0663250:CDS
AACGGGCTTACGTGTCTGAA+AGG	0.563864	4_4:-1946353	None:intergenic
AACTTGTTGATGCTTCAATA+TGG	0.391748	4_4:-1948854	None:intergenic
AAGACCGATGGTGTAGTAGG+TGG	0.653554	4_4:+1949244	Msa0663250:CDS
AAGACTAAGAATTTGATGAA+TGG	0.549296	4_4:+1950819	Msa0663250:CDS
AAGAGGCCAAAGGGAACATT+AGG	0.295298	4_4:+1949807	Msa0663250:CDS
AAGGAACAAAGAATAACCGA+GGG	0.671951	4_4:+1950277	Msa0663250:CDS
AAGGATGGTGTTGAAGTTGG+CGG	0.552547	4_4:+1949001	Msa0663250:CDS
AAGGTGGTGGTGGCAAAAGG+AGG	0.615115	4_4:+1949044	Msa0663250:CDS

Showing 1 to 10 of 175 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATTTGCGAAGTGAAAA+CGG	-	chr4_4:1946528-1946547	None:intergenic	30.0%
TTTCACTTCGCAAATTTCAT+TGG	+	chr4_4:1946529-1946548	Msa0663250:five_prime_UTR	30.0%
TAAACTGAAACAATCCAAAC+AGG	-	chr4_4:1946813-1946832	None:intergenic	30.0%
AACACCAATCAAAACAAAAC+AGG	-	chr4_4:1946905-1946924	None:intergenic	30.0%
TTTGTGCTCACTACTAAAAT+GGG	-	chr4_4:1946954-1946973	None:intergenic	30.0%
TTCATCCAAAACAACCAATA+AGG	-	chr4_4:1947027-1947046	None:intergenic	30.0%
AAACCATATAGACTGATACA+CGG	-	chr4_4:1947257-1947276	None:intergenic	30.0%
TTTCAACATTTAGCATGTAC+TGG	+	chr4_4:1947363-1947382	Msa0663250:intron	30.0%
TGCAACTTTATCAGCTTAAA+AGG	-	chr4_4:1947686-1947705	None:intergenic	30.0%
TGATTTAATTGAGGCAATGT+TGG	-	chr4_4:1947915-1947934	None:intergenic	30.0%

Showing 1 to 10 of 333 entries

Previous1 2 3 4 5…34Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	1946288	1951415	1946288	ID=Msa0663250;Name=Msa0663250
chr4_4	mRNA	1946288	1951415	1946288	ID=Msa0663250-mRNA-1;Parent=Msa0663250;Name=Msa0663250-mRNA-1;_AED=0.17;_eAED=0.17;_QI=463\|0.88\|0.8\|1\|0.66\|0.6\|10\|0\|557
chr4_4	exon	1946288	1946360	1946288	ID=Msa0663250-mRNA-1:exon:504;Parent=Msa0663250-mRNA-1
chr4_4	exon	1946390	1946615	1946390	ID=Msa0663250-mRNA-1:exon:505;Parent=Msa0663250-mRNA-1
chr4_4	exon	1947053	1947148	1947053	ID=Msa0663250-mRNA-1:exon:506;Parent=Msa0663250-mRNA-1
chr4_4	exon	1948843	1949448	1948843	ID=Msa0663250-mRNA-1:exon:507;Parent=Msa0663250-mRNA-1
chr4_4	exon	1949636	1949986	1949636	ID=Msa0663250-mRNA-1:exon:508;Parent=Msa0663250-mRNA-1
chr4_4	exon	1950253	1950442	1950253	ID=Msa0663250-mRNA-1:exon:509;Parent=Msa0663250-mRNA-1
chr4_4	exon	1950522	1950683	1950522	ID=Msa0663250-mRNA-1:exon:510;Parent=Msa0663250-mRNA-1
chr4_4	exon	1950800	1951015	1950800	ID=Msa0663250-mRNA-1:exon:511;Parent=Msa0663250-mRNA-1
chr4_4	exon	1951112	1951149	1951112	ID=Msa0663250-mRNA-1:exon:512;Parent=Msa0663250-mRNA-1
chr4_4	exon	1951237	1951415	1951237	ID=Msa0663250-mRNA-1:exon:513;Parent=Msa0663250-mRNA-1
chr4_4	five_prime_UTR	1946288	1946360	1946288	ID=Msa0663250-mRNA-1:five_prime_utr;Parent=Msa0663250-mRNA-1
chr4_4	five_prime_UTR	1946390	1946615	1946390	ID=Msa0663250-mRNA-1:five_prime_utr;Parent=Msa0663250-mRNA-1
chr4_4	five_prime_UTR	1947053	1947148	1947053	ID=Msa0663250-mRNA-1:five_prime_utr;Parent=Msa0663250-mRNA-1
chr4_4	five_prime_UTR	1948843	1948910	1948843	ID=Msa0663250-mRNA-1:five_prime_utr;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1948911	1949448	1948911	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1949636	1949986	1949636	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1950253	1950442	1950253	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1950522	1950683	1950522	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1950800	1951015	1950800	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1951112	1951149	1951112	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1
chr4_4	CDS	1951237	1951415	1951237	ID=Msa0663250-mRNA-1:cds;Parent=Msa0663250-mRNA-1

Gene Sequence

>Msa0663250

ATGCCTAATAGATATCCAAGCATTCAATATCCGATTGGAAAACCCAGGAGATCGAATAGGATTAGAGCTCGATGCGATGGCGAAAGGATGAAGGATGGTGTTGAAGTTGGCGGTGGCGGTGGCACCGGTGTTGAAGGTGGTGGTGGCAAAAGGAGGACCGATGGTGTAGTAGGTGGTGGTGGGGAAAGGAGAAGGTCGAAAAGAACTAGGGCCATGGTTGAAGTTGGTGGTGGTGGCAACGAGGCTGCAGATGGTGGTGGAAAAATGAGGATGGATGGTGTTGAAGTTGGCGGTGGCGGTGACACCGGAGCTAAAGGTGGTGGTGGCGAAAGGAAGACCGATGGTGTAGTAGGTGGCGGTGGGGAAAGGAGAAGGTCCAAAAGAATTAGGTCCATGGTTGAAGTTGGCGGCGGTGGCTATGAGGCTGTAGATGGTGGTGGACAAATGAGGATGGATGGTGTTGAAGTTGGCGGTGGAGATGTGCATGGTGGTTGTGCTGAGATATTAGAAAAGCTGAGGAGTGAACTCATTGAAACGAAACATAATGTGGAGAAACAAGCTGGAGACATCAAGAAATTGGAAGAAACATTGAGCAGTTTACAAATGAAGCATATTCAAACTGTGGAGAAACAAGGTGAACACATCAAGAAATTGGAAGAAGCGTTGAACAATTTACATGAACAGAGAAGGAAACTCTTCAATGAAGTTCAAGAGGCCAAAGGGAACATTAGGGTTTTTTGCCGCTGTCGACCATTGAGTAGTGATGAAATGTCGGCTGGGTGTAAAACTGTTGTGGATTTCGATGCAGCAAAGGAGGGATGTCTTAGAATTTTGCACAACTCCAAAATTTTTAGATTTGACAGGGTTTATACACCAAAAGATGATCAAGGGTCTGGAAAAACATATACAATGGAAGGAACAAAGAATAACCGAGGGGTTAATTACAGGACTCTAGAGTATTTGTTTAGAATTAGTAATGAGAGGAGGGAAACATTTTCATACGACATATCTGTTAGCGTTGTTGAGGTCTATAACGAACAGATAAGAGATTTGCTGGCTACAGGACCAACATCAAAAAGGTTGGAGATAAAACAAAATTTTGAAGGACATCATCATGTCCCTGGTGTTGTAGAAGCCAAGGTTGATGACCTGAGTGACATGTTGAAGGTACTGCAGACTGGAAGCAATGCTAGAGCAGTTGGAAGTAATAACATCAATGAGGAGAGCAGTAGATCTCATGGCGTGCTATGTATAACAGTAAAGACTAAGAATTTGATGAATGGCGAGTGTACCACGAGCAAACTTTGGCTTGTGGATTTGGCAGGTAGTGAGAGACTTGCAAAGACTGATCTGGAAGGTGAGCGGCGTAAGGAGGCACAAAATATCAATCGTTCTCTTTCTGCTCTTGGAGATGTGATTTCTGCTTTAGGTTCTAAGAAAACTCATATTCCGTATAGGAATTCTAAATTGACACATTTACTCCAAGACTCACTAGGAGGACACTCCTCAAAAACTGCACTATTTTTGCATGTGAGTCCATCAGACCAGGACGTCAGTGAGACTCTGAGTTCACTTAATTTTGCAACGAGAGTGAAGCGCATTGAGTTAGGTCCTGTTAAGAAGCAAATTGATACAGTTGACCTTCAAAAATCGAAGGTAATGGTAGGTTGCTGA

Protein sequence

>Msa0663250

MPNRYPSIQYPIGKPRRSNRIRARCDGERMKDGVEVGGGGGTGVEGGGGKRRTDGVVGGGGERRRSKRTRAMVEVGGGGNEAADGGGKMRMDGVEVGGGGDTGAKGGGGERKTDGVVGGGGERRRSKRIRSMVEVGGGGYEAVDGGGQMRMDGVEVGGGDVHGGCAEILEKLRSELIETKHNVEKQAGDIKKLEETLSSLQMKHIQTVEKQGEHIKKLEEALNNLHEQRRKLFNEVQEAKGNIRVFCRCRPLSSDEMSAGCKTVVDFDAAKEGCLRILHNSKIFRFDRVYTPKDDQGSGKTYTMEGTKNNRGVNYRTLEYLFRISNERRETFSYDISVSVVEVYNEQIRDLLATGPTSKRLEIKQNFEGHHHVPGVVEAKVDDLSDMLKVLQTGSNARAVGSNNINEESSRSHGVLCITVKTKNLMNGECTTSKLWLVDLAGSERLAKTDLEGERRKEAQNINRSLSALGDVISALGSKKTHIPYRNSKLTHLLQDSLGGHSSKTALFLHVSPSDQDVSETLSSLNFATRVKRIELGPVKKQIDTVDLQKSKVMVGC*