AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274730


Find 235 sgRNAs with CRISPR-Local

Find 619 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr2_3 gene 6595718 6604660 6595718 ID=Msa0274730;Name=Msa0274730
chr2_3 mRNA 6595718 6604660 6595718 ID=Msa0274730-mRNA-1;Parent=Msa0274730;Name=Msa0274730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=58|0.92|0.88|0.96|0.92|0.88|26|0|1043
chr2_3 exon 6595718 6595741 6595718 ID=Msa0274730-mRNA-1:exon:3171;Parent=Msa0274730-mRNA-1
chr2_3 exon 6596705 6596803 6596705 ID=Msa0274730-mRNA-1:exon:3170;Parent=Msa0274730-mRNA-1
chr2_3 exon 6596893 6597108 6596893 ID=Msa0274730-mRNA-1:exon:3169;Parent=Msa0274730-mRNA-1
chr2_3 exon 6597194 6597372 6597194 ID=Msa0274730-mRNA-1:exon:3168;Parent=Msa0274730-mRNA-1
chr2_3 exon 6597629 6597794 6597629 ID=Msa0274730-mRNA-1:exon:3167;Parent=Msa0274730-mRNA-1
chr2_3 exon 6597872 6597930 6597872 ID=Msa0274730-mRNA-1:exon:3166;Parent=Msa0274730-mRNA-1
chr2_3 exon 6598016 6598070 6598016 ID=Msa0274730-mRNA-1:exon:3165;Parent=Msa0274730-mRNA-1
chr2_3 exon 6598163 6598232 6598163 ID=Msa0274730-mRNA-1:exon:3164;Parent=Msa0274730-mRNA-1
chr2_3 exon 6598310 6598399 6598310 ID=Msa0274730-mRNA-1:exon:3163;Parent=Msa0274730-mRNA-1
chr2_3 exon 6598485 6598561 6598485 ID=Msa0274730-mRNA-1:exon:3162;Parent=Msa0274730-mRNA-1
chr2_3 exon 6598682 6598710 6598682 ID=Msa0274730-mRNA-1:exon:3161;Parent=Msa0274730-mRNA-1
chr2_3 exon 6598836 6599024 6598836 ID=Msa0274730-mRNA-1:exon:3160;Parent=Msa0274730-mRNA-1
chr2_3 exon 6599118 6599211 6599118 ID=Msa0274730-mRNA-1:exon:3159;Parent=Msa0274730-mRNA-1
chr2_3 exon 6599293 6599380 6599293 ID=Msa0274730-mRNA-1:exon:3158;Parent=Msa0274730-mRNA-1
chr2_3 exon 6599475 6599695 6599475 ID=Msa0274730-mRNA-1:exon:3157;Parent=Msa0274730-mRNA-1
chr2_3 exon 6599802 6599875 6599802 ID=Msa0274730-mRNA-1:exon:3156;Parent=Msa0274730-mRNA-1
chr2_3 exon 6599967 6600020 6599967 ID=Msa0274730-mRNA-1:exon:3155;Parent=Msa0274730-mRNA-1
chr2_3 exon 6600096 6600249 6600096 ID=Msa0274730-mRNA-1:exon:3154;Parent=Msa0274730-mRNA-1
chr2_3 exon 6600334 6600468 6600334 ID=Msa0274730-mRNA-1:exon:3153;Parent=Msa0274730-mRNA-1
chr2_3 exon 6601221 6601442 6601221 ID=Msa0274730-mRNA-1:exon:3152;Parent=Msa0274730-mRNA-1
chr2_3 exon 6601539 6601718 6601539 ID=Msa0274730-mRNA-1:exon:3151;Parent=Msa0274730-mRNA-1
chr2_3 exon 6601887 6601984 6601887 ID=Msa0274730-mRNA-1:exon:3150;Parent=Msa0274730-mRNA-1
chr2_3 exon 6602362 6602465 6602362 ID=Msa0274730-mRNA-1:exon:3149;Parent=Msa0274730-mRNA-1
chr2_3 exon 6603648 6603751 6603648 ID=Msa0274730-mRNA-1:exon:3148;Parent=Msa0274730-mRNA-1
chr2_3 exon 6603846 6603968 6603846 ID=Msa0274730-mRNA-1:exon:3147;Parent=Msa0274730-mRNA-1
chr2_3 exon 6604375 6604660 6604375 ID=Msa0274730-mRNA-1:exon:3146;Parent=Msa0274730-mRNA-1
chr2_3 five_prime_UTR 6604603 6604660 6604603 ID=Msa0274730-mRNA-1:five_prime_utr;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6604375 6604602 6604375 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6603846 6603968 6603846 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6603648 6603751 6603648 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6602362 6602465 6602362 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6601887 6601984 6601887 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6601539 6601718 6601539 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6601221 6601442 6601221 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6600334 6600468 6600334 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6600096 6600249 6600096 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6599967 6600020 6599967 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6599802 6599875 6599802 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6599475 6599695 6599475 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6599293 6599380 6599293 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6599118 6599211 6599118 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6598836 6599024 6598836 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6598682 6598710 6598682 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6598485 6598561 6598485 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6598310 6598399 6598310 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6598163 6598232 6598163 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6598016 6598070 6598016 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6597872 6597930 6597872 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6597629 6597794 6597629 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6597194 6597372 6597194 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6596893 6597108 6596893 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6596705 6596803 6596705 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
chr2_3 CDS 6595718 6595741 6595718 ID=Msa0274730-mRNA-1:cds;Parent=Msa0274730-mRNA-1
Gene Sequence

>Msa0274730

ATGGCGAAACTGTCCAAGCAACAACCTTCTTCCGACGAAGAACAGGTGAACTCTTCGTCGGAGGAAGAAGAGCAAGTTAATGAGCAGATCAACGAAGAAGAAGATCAAGAGGAGTTGGAAGCTGTTGCTCGTGCTGTTAGTTCCGATGATGATGAAGATGTCGTTGGAGATAATCCTCCGGATTCTGATGCAGATGTTGCTGGTGAAGATGGTGATGATGATGGGGAGGGAGAAGGTGCTCCTGAAATAAGCAAACGTGAGAAGGCGAGATTGCGAGAAATGCAAAAAATGAAGAAACAGAAAGTTCAGGAGATATTAGATGCTCAAAATGCGGCCATTGAAGCTGACATGAATAACAGAGGAAAGGGGCGGTTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCCCATTTTGCGAAAGGTGACCAATCATCTCAAAAGAAGTCAAAAGGAAGTGGTCGCCATGCGTCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAAGGAGAAGAAGACGGTGTTTCAAACACTCGTCTGGTGACACAGCCATCATGTATTCAAGGGAAGATGAGGGATTACCAATTGGCTGGACTGAACTGGCTCATTCGATTGTATGAAAATGGAATAAATGGAATTCTGGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGCTACTTGCATGAGTTCAGAGGAATTAAAGGCCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGAAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTCTGCGTGCTGTAAAATTCCTTGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGACTTATTAGTTGCTGGAAAGTTTGACGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGTCTACTTTACGTCGATTTAGTTGGCGCTACATAATTATCGATGAAGCTCATAGAATCAAGAACGAGAATTCCTTGCTCTCTAAAACAATGAGGATTTACAATACAAACTATCGCCTCCTTATCACTGGTACACCGCTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACCTTCGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTGCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAAGAAACCATTCTTAAAGTGGGCATGTCACAATTGCAGAAACAATATTATAAAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGCTGAACCTGGTCCTCCTTATACAACAGGAGATCATCTCATTACCAGTGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATTGATGCTTTCAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGACGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAAGATCGTGCCCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACCGAGTATACGATTGAGGAGAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAACAGGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACTGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAGGCAACTGCAGAGCTTGATGCCAAGATGAAGAAATTTACAGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATACGATTTTGATGATAAGGATGAGAACAAGTTTGATTTCAAAAAAATTGTGAGTGAAAACTGGGTTGAACCAACAAGAAGGGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACCATGCGGCAAGGTGGTCCTTCTAAACCAAAGGAGCCCCGCATTCCTAGGATGCCACAGTTGCATGATTTCCAGTTTTTCAACACACCGAGATTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAACCCATCAGAAGAATCAGGTAAAGGACTCGATAGATGTTGATGAACCAGAAGAGGTAGGAGATCAATTGACCGCTGAAGAGATGGAAGAAAAGGAGCGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGAAAAGATTTTAACACCTTCCTCAGGGCCTGTGAGAAATATGGTCGAAATGATATACAAAGTATTGCCTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATCAAAAACATCGAGAGGGGGGAGGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCTATCGGAAAGAAATTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGGTACAGTATGGGCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCGTTTCGAACATCACCCTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAACTTGCAAGGAGGTGCGACACCCTCATTCGGTTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAGAACATGACTCCGACAAAGCGGGCTTTGGCAAGACAAACTGAGAGTCCATCTTCTGCTAAGAAGCGGAAGCAGTCAACCACAGATGATTATGCTAGCACGGCTTTGACCAAAAAGCATATTTGA

Protein sequence

>Msa0274730

MAKLSKQQPSSDEEQVNSSSEEEEQVNEQINEEEDQEELEAVARAVSSDDDEDVVGDNPPDSDADVAGEDGDDDGEGEGAPEISKREKARLREMQKMKKQKVQEILDAQNAAIEADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGSGRHASKVTEEEEDEEYLKGEEDGVSNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDKDENKFDFKKIVSENWVEPTRRERKRNYSESEYFKQTMRQGGPSKPKEPRIPRMPQLHDFQFFNTPRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDQLTAEEMEEKERLLEEGFSSWSRKDFNTFLRACEKYGRNDIQSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPTKRALARQTESPSSAKKRKQSTTDDYASTALTKKHI*