AlfalfaGEDB | Msa0341230

M. sativa cultivar zhongmu-4 / Msa0341230

KEGG: K04730|K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341230	XP_003597913.1	99.150	353	3	0	35	387	15	367	0.0	721

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341230	sp\|Q9LSC2\|Y3589_ARATH	64.080	348	123	2	36	382	15	361	6.41e-163	464

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0341230	0.847156	1.381916e-59	-8.615850e-47
Msa0005000	Msa0341230	-0.812209	4.757598e-51	-8.615850e-47
Msa0005270	Msa0341230	0.814589	1.426360e-51	-8.615850e-47
Msa0008220	Msa0341230	0.813922	2.003216e-51	-8.615850e-47
Msa0009100	Msa0341230	0.834720	2.545237e-56	-8.615850e-47
Msa0010770	Msa0341230	0.848048	7.856387e-60	-8.615850e-47
Msa0013540	Msa0341230	0.814214	1.726382e-51	-8.615850e-47
Msa0015090	Msa0341230	0.803274	3.769457e-49	-8.615850e-47
Msa0017320	Msa0341230	0.865805	4.523148e-65	-8.615850e-47
Msa0021210	Msa0341230	0.803420	3.515746e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341230	MtrunA17_Chr2g0333181	99.150	353	3	0	35	387	15	367	0.0	721
Msa0341230	MtrunA17_Chr4g0072901	62.997	327	111	2	45	369	27	345	1.57e-150	430
Msa0341230	MtrunA17_Chr6g0485721	47.751	289	147	2	47	333	85	371	3.28e-91	280
Msa0341230	MtrunA17_Chr6g0485761	46.918	292	149	2	47	334	282	571	3.59e-90	285
Msa0341230	MtrunA17_Chr8g0373501	47.099	293	147	3	47	334	324	613	1.03e-89	284
Msa0341230	MtrunA17_Chr5g0413511	42.075	347	182	6	47	378	46	388	1.93e-89	275
Msa0341230	MtrunA17_Chr7g0221191	47.176	301	151	3	48	344	383	679	2.17e-89	285
Msa0341230	MtrunA17_Chr2g0281971	45.215	303	165	1	46	348	35	336	5.63e-89	273
Msa0341230	MtrunA17_Chr3g0144551	45.603	307	165	1	46	352	120	424	2.01e-87	271
Msa0341230	MtrunA17_Chr2g0278861	46.032	315	163	4	48	358	277	588	5.34e-87	275

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0341230	AT1G52540.2	65.976	338	107	3	35	372	12	341	2.59e-164	464
Msa0341230	AT1G52540.1	65.976	338	107	3	35	372	15	344	6.06e-164	463
Msa0341230	AT3G15890.1	64.080	348	123	2	36	382	15	361	6.52e-164	464
Msa0341230	AT1G70460.1	50.859	291	137	3	48	334	341	629	7.68e-93	293
Msa0341230	AT1G68690.1	45.981	311	158	3	47	350	364	671	2.41e-91	289
Msa0341230	AT1G68690.3	45.981	311	158	3	47	350	364	671	2.41e-91	289
Msa0341230	AT1G68690.2	45.981	311	158	3	47	350	364	671	2.41e-91	289
Msa0341230	AT3G24540.1	47.766	291	146	2	47	333	170	458	5.74e-91	282
Msa0341230	AT1G68690.4	48.772	285	139	2	47	327	364	645	3.05e-90	285
Msa0341230	AT1G60800.2	49.481	289	144	2	48	334	222	510	3.83e-90	282

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Find 106 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAAGATAACGCTTG+TGG	0.621921	2_4:+62715926	Msa0341230:three_prime_UTR
AAAGAAAACACTCGCCATGG+AGG	0.702534	2_4:-62713688	None:intergenic
AACACCGCATATCATCCATA+GGG	0.634115	2_4:+62715054	Msa0341230:CDS
AACTAAGTTCTTCAGTGAAA+CGG	0.438441	2_4:+62715311	Msa0341230:CDS
AAGAATCTTCTTAGTCTACG+TGG	0.730144	2_4:+62714783	Msa0341230:CDS
AAGACTTAATGGTGACTATG+TGG	0.583549	2_4:+62715396	Msa0341230:CDS
AAGGGTGCCCTTAACTCGAG+TGG	0.638288	2_4:-62715176	None:intergenic
AATTGGCCGCTATAATAAAC+AGG	0.456753	2_4:-62715799	None:intergenic
ACATAGTCACCATTAAGTCT+TGG	0.509082	2_4:-62715394	None:intergenic
ACATCCCTATGGATGATATG+CGG	0.704980	2_4:-62715058	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTAAAACTGTTGCAG+CGG	-	chr2_4:62711538-62711557	None:intergenic	30.0%
TTAAGATTTATGTTGCCTCT+AGG	+	chr2_4:62711676-62711695	Msa0341230:intron	30.0%
TAAGATTTATGTTGCCTCTA+GGG	+	chr2_4:62711677-62711696	Msa0341230:intron	30.0%
TGTAGTTGGAAATAGCAAAA+GGG	-	chr2_4:62712261-62712280	None:intergenic	30.0%
ATGTAGTTGGAAATAGCAAA+AGG	-	chr2_4:62712262-62712281	None:intergenic	30.0%
TTCAAAAGGGTCCTATAATT+AGG	+	chr2_4:62712459-62712478	Msa0341230:intron	30.0%
TCAAAAGGGTCCTATAATTA+GGG	+	chr2_4:62712460-62712479	Msa0341230:intron	30.0%
GAAACAAGAACAACAACAAA+AGG	-	chr2_4:62712654-62712673	None:intergenic	30.0%
AAATCTATGAAACACGGATA+CGG	-	chr2_4:62713269-62713288	None:intergenic	30.0%
TTTGGTATGTAAACTCTCAA+GGG	+	chr2_4:62713377-62713396	Msa0341230:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	62711302	62715964	62711302	ID=Msa0341230;Name=Msa0341230
chr2_4	mRNA	62711302	62715964	62711302	ID=Msa0341230-mRNA-1;Parent=Msa0341230;Name=Msa0341230-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.66\|0.75\|0.75\|1\|1\|4\|280\|387
chr2_4	exon	62711302	62711405	62711302	ID=Msa0341230-mRNA-1:exon:19990;Parent=Msa0341230-mRNA-1
chr2_4	exon	62713666	62713813	62713666	ID=Msa0341230-mRNA-1:exon:19991;Parent=Msa0341230-mRNA-1
chr2_4	exon	62714696	62714958	62714696	ID=Msa0341230-mRNA-1:exon:19992;Parent=Msa0341230-mRNA-1
chr2_4	exon	62715036	62715964	62715036	ID=Msa0341230-mRNA-1:exon:19993;Parent=Msa0341230-mRNA-1
chr2_4	CDS	62711302	62711405	62711302	ID=Msa0341230-mRNA-1:cds;Parent=Msa0341230-mRNA-1
chr2_4	CDS	62713666	62713813	62713666	ID=Msa0341230-mRNA-1:cds;Parent=Msa0341230-mRNA-1
chr2_4	CDS	62714696	62714958	62714696	ID=Msa0341230-mRNA-1:cds;Parent=Msa0341230-mRNA-1
chr2_4	CDS	62715036	62715684	62715036	ID=Msa0341230-mRNA-1:cds;Parent=Msa0341230-mRNA-1
chr2_4	three_prime_UTR	62715685	62715964	62715685	ID=Msa0341230-mRNA-1:three_prime_utr;Parent=Msa0341230-mRNA-1

Gene Sequence

>Msa0341230

ATGAAATCTCACCCCTTCTGCTTATATGTTGCCTCGACCGTGGGTAATGTGCAGGTAATAAAGGTTAGAGGCGTTCGTGAGTGGACTCCTCACTTGGTGTCTAGAAAAGGACGTGGGAAGAAACAACCTCCATGGCGAGTGTTTTCTTTGAAGGAATTACACTCTGCTACAAATAACTTCAATTATGATAACAAGCTTGGCGAGGGGGGATTTGGAAGTGTTTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTCAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGCCAGGAACGGCTAATTGTATATGACTATATGCCGAATTTGAGCCTACTCTCTCATCTTCACGGACAGCACTCGACAGAAAGCCTCCTTGATTGGAATCGACGAATGAATATTGCAATCGGATCTGCTGAGGGAATTGTATATCTTCACGTTCAAGCAACACCGCATATCATCCATAGGGATGTTAAAGCAAGCAACGTGTTGCTGGATTCAGATTTTCAAGCGCGTGTTGCTGATTTTGGCTTCGCCAAGTTGATCCCTGATGGAGCAACGCATGTGACCACTCGAGTTAAGGGCACCCTTGGCTATCTTGCACCAGAATATGCTATGTTAGGTAAAGCCAATGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCCTTCTCGAACTTGCCAGCGGCAAAAAACCGCTTGAAAAACTAAGTTCTTCAGTGAAACGGGCGATAAATGATTGGGCACTACCATTAGCCTGTGAAAAGAAATTTAGTGAACTTGCAGATCCAAGACTTAATGGTGACTATGTGGAAGAAGAGCTTAAAAGGGTTGTATTAGTTGCTCTAATATGTGCTCAGAATCAGCCTGAGAAGAGACCTACGATGGTCGAGGTGGTAGAACTACTGAAGGGAGAGTCTAAAGAGAAGGTTTCGCAGTTGGAGAATAATGAACTGTTTAAGAACCCCCTTGCTGTAGGAAACAATAATGATGAAATATCAGCTGCTGAAGGGAGTTCTGACTTCATATCAGCGGAGAATGAATCTAAACATGAGATGGAAGAGAATGCAGAACCATGA

Protein sequence

>Msa0341230

MKSHPFCLYVASTVGNVQVIKVRGVREWTPHLVSRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSTESLLDWNRRMNIAIGSAEGIVYLHVQATPHIIHRDVKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSSVKRAINDWALPLACEKKFSELADPRLNGDYVEEELKRVVLVALICAQNQPEKRPTMVEVVELLKGESKEKVSQLENNELFKNPLAVGNNNDEISAAEGSSDFISAENESKHEMEENAEP*