Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045420 | sp|Q9SZN1|VATB2_ARATH | 91.463 | 164 | 8 | 1 | 56 | 213 | 34 | 197 | 8.92e-101 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045100 | Msa0045420 | 0.887450 | 1.411660e-72 | -8.615850e-47 |
| Msa0045120 | Msa0045420 | 0.821655 | 3.597766e-53 | -8.615850e-47 |
| Msa0045150 | Msa0045420 | 0.824045 | 9.984052e-54 | -8.615850e-47 |
| Msa0045160 | Msa0045420 | 0.880294 | 6.180415e-70 | -8.615850e-47 |
| Msa0045350 | Msa0045420 | 0.804955 | 1.684681e-49 | -8.615850e-47 |
| Msa0045370 | Msa0045420 | 0.827583 | 1.444213e-54 | -8.615850e-47 |
| Msa0045380 | Msa0045420 | 0.902978 | 5.571039e-79 | -8.615850e-47 |
| Msa0045420 | Msa1085010 | 0.878769 | 2.148381e-69 | -8.615850e-47 |
| Msa0045420 | Msa1426790 | 0.846472 | 2.126704e-59 | -8.615850e-47 |
| Msa0045420 | Msa1426820 | 0.894931 | 1.549160e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045420 | MtrunA17_Chr7g0250051 | 92.073 | 164 | 7 | 1 | 56 | 213 | 34 | 197 | 2.98e-102 | 304 |
| Msa0045420 | MtrunA17_Chr1g0211291 | 92.073 | 164 | 7 | 1 | 56 | 213 | 35 | 198 | 4.27e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045420 | AT4G38510.5 | 91.463 | 164 | 8 | 1 | 56 | 213 | 41 | 204 | 8.55e-102 | 303 |
| Msa0045420 | AT4G38510.1 | 91.463 | 164 | 8 | 1 | 56 | 213 | 34 | 197 | 9.07e-102 | 303 |
| Msa0045420 | AT4G38510.3 | 91.463 | 164 | 8 | 1 | 56 | 213 | 34 | 197 | 9.07e-102 | 303 |
| Msa0045420 | AT4G38510.4 | 91.463 | 164 | 8 | 1 | 56 | 213 | 34 | 197 | 9.07e-102 | 303 |
| Msa0045420 | AT4G38510.2 | 91.463 | 164 | 8 | 1 | 56 | 213 | 34 | 197 | 9.07e-102 | 303 |
| Msa0045420 | AT1G20260.1 | 89.506 | 162 | 11 | 1 | 58 | 213 | 35 | 196 | 3.03e-99 | 296 |
| Msa0045420 | AT1G76030.1 | 90.123 | 162 | 10 | 1 | 58 | 213 | 35 | 196 | 1.31e-98 | 295 |
Find 50 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGACAATCTCTTGATATT+TGG | 0.086118 | 1_1:+77345321 | None:intergenic |
| TTGACAATCTCTTGATATTT+GGG | 0.268902 | 1_1:+77345322 | None:intergenic |
| TTTACGACCGTACAGTTTAC+TGG | 0.269439 | 1_1:-77344956 | Msa0045420:CDS |
| GGGCGGATATTTAACGGTTC+TGG | 0.291085 | 1_1:-77343843 | Msa0045420:CDS |
| AAGTAAGCCTCGAGTAAAAT+TGG | 0.302617 | 1_1:+77343816 | None:intergenic |
| CAGGTATTTGAAGGTACATC+TGG | 0.345618 | 1_1:-77344992 | Msa0045420:CDS |
| GAGATTGTCAATATTCGTTT+AGG | 0.348480 | 1_1:-77345310 | Msa0045420:CDS |
| CTGTGCAGCAATTTCATTAT+GGG | 0.352240 | 1_1:+77343563 | None:intergenic |
| TCTGTGCAGCAATTTCATTA+TGG | 0.352813 | 1_1:+77343562 | None:intergenic |
| GAGGCTTACTTGGATATATC+AGG | 0.402927 | 1_1:-77343804 | Msa0045420:intron |
| GAAGAGGTTGTCCTTCGAAC+TGG | 0.406908 | 1_1:+77347464 | None:intergenic |
| TGCTGCACAGATTTGTCGTC+AGG | 0.414638 | 1_1:-77343550 | Msa0045420:CDS |
| TGGCGAAAAGGCTGTTGTTC+AGG | 0.415818 | 1_1:-77345248 | Msa0045420:intron |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+77347175 | None:intergenic |
| CTGTATCATTGGACATGCTT+GGG | 0.442480 | 1_1:-77343863 | Msa0045420:CDS |
| ATGCTTGGGCGGATATTTAA+CGG | 0.445195 | 1_1:-77343849 | Msa0045420:CDS |
| CCAAGCATGTCCAATGATAC+AGG | 0.451792 | 1_1:+77343864 | None:intergenic |
| CCTGTATCATTGGACATGCT+TGG | 0.467212 | 1_1:-77343864 | Msa0045420:CDS |
| GTCAATATTCGTTTAGGCGA+TGG | 0.473500 | 1_1:-77345304 | Msa0045420:CDS |
| AGACCGGCAGCTGAAAATAG+AGG | 0.475986 | 1_1:+77343588 | None:intergenic |
| CTCGAGAACTTGTCCATGCC+GGG | 0.477725 | 1_1:+77345276 | None:intergenic |
| GGACAAGTTCTCGAGATTGA+TGG | 0.478592 | 1_1:-77345268 | Msa0045420:CDS |
| GCACAGATTTGTCGTCAGGC+TGG | 0.482424 | 1_1:-77343546 | Msa0045420:CDS |
| ACTATTGATCAGGTATTTGA+AGG | 0.488267 | 1_1:-77345001 | Msa0045420:intron |
| CCAGTCTGTATCATCTCCTC+AGG | 0.497280 | 1_1:+77343660 | None:intergenic |
| TCAGGATAGGTTCTATCACT+AGG | 0.497405 | 1_1:+77343678 | None:intergenic |
| TCTCGAGAACTTGTCCATGC+CGG | 0.512745 | 1_1:+77345275 | None:intergenic |
| GGTTCTATCACTAGGGTTGA+CGG | 0.522874 | 1_1:+77343686 | None:intergenic |
| TCTCGAGATTGATGGCGAAA+AGG | 0.527436 | 1_1:-77345260 | Msa0045420:CDS |
| CACTTGCAAAAGATGGAGAC+AGG | 0.528925 | 1_1:+77347182 | None:intergenic |
| CCTTCATTAGCTCTTCATGC+AGG | 0.532164 | 1_1:+77347128 | None:intergenic |
| CTGTATCATCTCCTCAGGAT+AGG | 0.550371 | 1_1:+77343665 | None:intergenic |
| CCTGAGGAGATGATACAGAC+TGG | 0.558233 | 1_1:-77343660 | Msa0045420:CDS |
| GGCGATGGAACTACCCGGCA+TGG | 0.573515 | 1_1:-77345289 | Msa0045420:CDS |
| TGTGCAGCAATTTCATTATG+GGG | 0.578028 | 1_1:+77343564 | None:intergenic |
| CAGGATAGGTTCTATCACTA+GGG | 0.584904 | 1_1:+77343679 | None:intergenic |
| ACATGGAAATTCCAGTTCGA+AGG | 0.590375 | 1_1:-77347475 | Msa0045420:CDS |
| AACATAATAAGCTTCTGAAG+AGG | 0.600221 | 1_1:+77347448 | None:intergenic |
| AGGTATTTGAAGGTACATCT+GGG | 0.603787 | 1_1:-77344991 | Msa0045420:CDS |
| CCTGCATGAAGAGCTAATGA+AGG | 0.605404 | 1_1:-77347128 | Msa0045420:intron |
| ATTAGCTCTTCATGCAGGCG+AGG | 0.608084 | 1_1:+77347133 | None:intergenic |
| TATCATTGGACATGCTTGGG+CGG | 0.609865 | 1_1:-77343860 | Msa0045420:CDS |
| GTCATGAATTCTATTGCTAG+AGG | 0.622259 | 1_1:-77343621 | Msa0045420:CDS |
| GACCGTACAGTTTACTGGAG+AGG | 0.629013 | 1_1:-77344951 | Msa0045420:intron |
| GTGCAGCAATTTCATTATGG+GGG | 0.632413 | 1_1:+77343565 | None:intergenic |
| TACCTCTCCAGTAAACTGTA+CGG | 0.633139 | 1_1:+77344949 | None:intergenic |
| GACCGGCAGCTGAAAATAGA+GGG | 0.638267 | 1_1:+77343589 | None:intergenic |
| GAAGTCTGATAATCTTCTTG+AGG | 0.648163 | 1_1:-77343505 | Msa0045420:CDS |
| GTTTAGGCGATGGAACTACC+CGG | 0.678023 | 1_1:-77345294 | Msa0045420:CDS |
| TAGTGATAGAACCTATCCTG+AGG | 0.709001 | 1_1:-77343676 | Msa0045420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATGTATCTTATAT+CGG | - | chr1_1:77345241-77345260 | Msa0045420:intron | 10.0% |
| !!! | TAATATATTTCTAATTATTC+AGG | - | chr1_1:77347259-77347278 | Msa0045420:intron | 10.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:77343659-77343678 | None:intergenic | 15.0% |
| !! | TTATTACTTATTGAAAAACT+TGG | - | chr1_1:77343962-77343981 | Msa0045420:intron | 15.0% |
| !! | TATTACTTATTGAAAAACTT+GGG | - | chr1_1:77343963-77343982 | Msa0045420:intron | 15.0% |
| !!! | AAAACTACATAATTTAAAGT+AGG | - | chr1_1:77343997-77344016 | Msa0045420:intron | 15.0% |
| !!! | GTTTATATGATAGTTTTAAT+AGG | - | chr1_1:77344061-77344080 | Msa0045420:intron | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:77344154-77344173 | None:intergenic | 15.0% |
| !! | TGTAAATCTATTGATATATT+GGG | - | chr1_1:77344932-77344951 | Msa0045420:intron | 15.0% |
| !!! | TAAACAGCATATATTTTTAT+GGG | + | chr1_1:77346132-77346151 | None:intergenic | 15.0% |
| !!! | ATAAACAGCATATATTTTTA+TGG | + | chr1_1:77346133-77346152 | None:intergenic | 15.0% |
| !!! | TTTAACTTGAAATTTTGTAT+TGG | - | chr1_1:77346437-77346456 | Msa0045420:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_1:77346691-77346710 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_1:77346690-77346709 | Msa0045420:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1_1:77346714-77346733 | Msa0045420:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr1_1:77346817-77346836 | Msa0045420:intron | 15.0% |
| !!! | ATCAATTTATTTCAAGTAGT+TGG | - | chr1_1:77344903-77344922 | Msa0045420:intron | 20.0% |
| !! | GTGTAAATCTATTGATATAT+TGG | - | chr1_1:77344931-77344950 | Msa0045420:intron | 20.0% |
| !! | AAGTTTGAACACATTTAAAA+AGG | + | chr1_1:77345327-77345346 | None:intergenic | 20.0% |
| !! | AATAAAGAGACACATAATTT+AGG | + | chr1_1:77345459-77345478 | None:intergenic | 20.0% |
| !! | AGTTAAAATTTAGTCACAAA+GGG | + | chr1_1:77345611-77345630 | None:intergenic | 20.0% |
| !! | AAGTTAAAATTTAGTCACAA+AGG | + | chr1_1:77345612-77345631 | None:intergenic | 20.0% |
| !!! | TTGTGACTAAATTTTAACTT+CGG | - | chr1_1:77345612-77345631 | Msa0045420:intron | 20.0% |
| !! | AAACTATAAAATGACGTTAA+AGG | + | chr1_1:77345937-77345956 | None:intergenic | 20.0% |
| !! | CTTTATAATAACTATTGATC+AGG | - | chr1_1:77345962-77345981 | Msa0045420:intron | 20.0% |
| !! | TAACAGTTAATGCATTATTT+AGG | + | chr1_1:77346188-77346207 | None:intergenic | 20.0% |
| !! | TATCTTCTTTATCATTATCT+GGG | + | chr1_1:77346300-77346319 | None:intergenic | 20.0% |
| !! | TTATCTTCTTTATCATTATC+TGG | + | chr1_1:77346301-77346320 | None:intergenic | 20.0% |
| !! | TAAATTCTGCTTAGAAAAAA+GGG | - | chr1_1:77346515-77346534 | Msa0045420:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr1_1:77346657-77346676 | Msa0045420:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_1:77346700-77346719 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr1_1:77346777-77346796 | Msa0045420:intron | 20.0% |
| !! | ATAAAAGTTCTTCCTTTAAT+TGG | - | chr1_1:77346978-77346997 | Msa0045420:intron | 20.0% |
| !! | TAAAAGCAAAATGTTAAAGA+AGG | + | chr1_1:77347013-77347032 | None:intergenic | 20.0% |
| ! | TGTCTAAACGAAATATCATA+GGG | + | chr1_1:77343729-77343748 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGATGAA+CGG | + | chr1_1:77343939-77343958 | None:intergenic | 25.0% |
| !!! | TGTGGTTATCATCTTTATTT+TGG | + | chr1_1:77344136-77344155 | None:intergenic | 25.0% |
| ! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:77344285-77344304 | None:intergenic | 25.0% |
| ! | AAAAGAATTGTTGTAGATGA+AGG | + | chr1_1:77344396-77344415 | None:intergenic | 25.0% |
| ! | TGTAAATCAATTGTTGTACA+GGG | - | chr1_1:77344430-77344449 | Msa0045420:intron | 25.0% |
| !! | TATGATTTTTCTCTGAACTT+TGG | - | chr1_1:77344515-77344534 | Msa0045420:intron | 25.0% |
| !! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:77344570-77344589 | None:intergenic | 25.0% |
| ! | AACAAGTTGTTTAATAGCAT+TGG | - | chr1_1:77344877-77344896 | Msa0045420:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr1_1:77345158-77345177 | None:intergenic | 25.0% |
| !!! | TAGGCAACTTTTTACTTTTT+AGG | + | chr1_1:77345183-77345202 | None:intergenic | 25.0% |
| !!! | GATACATTTTTTTTTTTCCC+TGG | + | chr1_1:77345235-77345254 | None:intergenic | 25.0% |
| !! | AAAATCACACATTTTAGATC+AGG | + | chr1_1:77345271-77345290 | None:intergenic | 25.0% |
| ! | AATACCATAAGTTATCAACA+CGG | + | chr1_1:77345412-77345431 | None:intergenic | 25.0% |
| ! | TTGACAATCTCTTGATATTT+GGG | + | chr1_1:77345654-77345673 | None:intergenic | 25.0% |
| ! | ATTGACAATCTCTTGATATT+TGG | + | chr1_1:77345655-77345674 | None:intergenic | 25.0% |
| ! | AATCTTATTATGCATGCTTA+AGG | + | chr1_1:77345757-77345776 | None:intergenic | 25.0% |
| ! | TGTCTTATCTCAATGAAATT+TGG | - | chr1_1:77346153-77346172 | Msa0045420:intron | 25.0% |
| ! | CTAAATTCTGCTTAGAAAAA+AGG | - | chr1_1:77346514-77346533 | Msa0045420:intron | 25.0% |
| ! | AAATTCTGCTTAGAAAAAAG+GGG | - | chr1_1:77346516-77346535 | Msa0045420:intron | 25.0% |
| ! | TTGAAATTCTAGTAATCACA+TGG | - | chr1_1:77346554-77346573 | Msa0045420:intron | 25.0% |
| ! | TCAATTCAATAACCAATACT+TGG | + | chr1_1:77346957-77346976 | None:intergenic | 25.0% |
| !!! | ACATTTTGCTTTTACTATAG+TGG | - | chr1_1:77347019-77347038 | Msa0045420:intron | 25.0% |
| ! | AACATAATAAGCTTCTGAAG+AGG | + | chr1_1:77343528-77343547 | None:intergenic | 30.0% |
| GTCTAAACGAAATATCATAG+GGG | + | chr1_1:77343728-77343747 | None:intergenic | 30.0% | |
| CTGTCTAAACGAAATATCAT+AGG | + | chr1_1:77343730-77343749 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:77343801-77343820 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:77343802-77343821 | Msa0045420:intron | 30.0% |
| TCGAATCTAATCTATCACAA+AGG | + | chr1_1:77343894-77343913 | None:intergenic | 30.0% | |
| GTCATCATTATCTTATGTGA+TGG | - | chr1_1:77344184-77344203 | Msa0045420:intron | 30.0% | |
| TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:77344370-77344389 | None:intergenic | 30.0% | |
| ! | AATTCTTTTCCTATGCAACT+AGG | - | chr1_1:77344407-77344426 | Msa0045420:intron | 30.0% |
| GTGTAAATCAATTGTTGTAC+AGG | - | chr1_1:77344429-77344448 | Msa0045420:intron | 30.0% | |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:77344726-77344745 | None:intergenic | 30.0% |
| TGCAACATACATTTAACCTT+TGG | - | chr1_1:77344743-77344762 | Msa0045420:intron | 30.0% | |
| !! | ATTCTAGAGTGATATACCAA+AGG | + | chr1_1:77344762-77344781 | None:intergenic | 30.0% |
| ! | TTATTTCAAGTAGTTGGACT+AGG | - | chr1_1:77344909-77344928 | Msa0045420:intron | 30.0% |
| GATGTATGTGGTCTATAATA+TGG | + | chr1_1:77345146-77345165 | None:intergenic | 30.0% | |
| GATAACTTATGGTATTCGTT+TGG | - | chr1_1:77345416-77345435 | Msa0045420:intron | 30.0% | |
| GTCATTCTTGAGAAAGTTTA+AGG | - | chr1_1:77345524-77345543 | Msa0045420:intron | 30.0% | |
| GAGATTGTCAATATTCGTTT+AGG | - | chr1_1:77345663-77345682 | Msa0045420:intron | 30.0% | |
| ACTATTGATCAGGTATTTGA+AGG | - | chr1_1:77345972-77345991 | Msa0045420:intron | 30.0% | |
| CTCAATGAAATTTGGATTAC+AGG | - | chr1_1:77346161-77346180 | Msa0045420:intron | 30.0% | |
| TTATAAGTATAGCCAACCAT+CGG | + | chr1_1:77346257-77346276 | None:intergenic | 30.0% | |
| TTCTTTATCATTATCTGGGA+CGG | + | chr1_1:77346296-77346315 | None:intergenic | 30.0% | |
| TTGCATGTCATCTTGATTAA+TGG | - | chr1_1:77346381-77346400 | Msa0045420:intron | 30.0% | |
| ATACATGTAAACCTAGAAAC+TGG | - | chr1_1:77346488-77346507 | Msa0045420:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_1:77346608-77346627 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_1:77346609-77346628 | Msa0045420:intron | 30.0% |
| !!! | CTTCCTTTAATTGGTTTTCT+TGG | - | chr1_1:77346987-77347006 | Msa0045420:intron | 30.0% |
| GTTAAAAACTCCTGTATCAT+TGG | - | chr1_1:77347099-77347118 | Msa0045420:intron | 30.0% | |
| ACTGCATGTTTGTTTATTTC+TGG | - | chr1_1:77347217-77347236 | Msa0045420:CDS | 30.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:77344324-77344343 | Msa0045420:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:77344325-77344344 | Msa0045420:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:77344419-77344438 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:77344669-77344688 | Msa0045420:intron | 35.0% |
| AAGTCTAAATGTATGCAGCT+GGG | + | chr1_1:77344801-77344820 | None:intergenic | 35.0% | |
| TAATTTCATAGCACGTAGCT+GGG | + | chr1_1:77344858-77344877 | None:intergenic | 35.0% | |
| TTAATTTCATAGCACGTAGC+TGG | + | chr1_1:77344859-77344878 | None:intergenic | 35.0% | |
| ! | ATGTTGCTTACATTTGAGAC+CGG | + | chr1_1:77345084-77345103 | None:intergenic | 35.0% |
| !! | CAATCCGTGTTGATAACTTA+TGG | - | chr1_1:77345405-77345424 | Msa0045420:intron | 35.0% |
| ACTTTCTCAAGAATGACCAA+TGG | + | chr1_1:77345521-77345540 | None:intergenic | 35.0% | |
| ! | AGGTATTTGAAGGTACATCT+GGG | - | chr1_1:77345982-77346001 | Msa0045420:intron | 35.0% |
| ! | GAATTTAGCTTCCAGTTTCT+AGG | + | chr1_1:77346502-77346521 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr1_1:77346739-77346758 | Msa0045420:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr1_1:77346743-77346762 | Msa0045420:intron | 35.0% |
| !!! | GACACTCATTTTGAAACAGA+GGG | - | chr1_1:77346847-77346866 | Msa0045420:intron | 35.0% |
| !! | GAGTGTTAATTTGTTCTGGA+GGG | - | chr1_1:77346869-77346888 | Msa0045420:intron | 35.0% |
| !! | AGTGTTAATTTGTTCTGGAG+GGG | - | chr1_1:77346870-77346889 | Msa0045420:intron | 35.0% |
| AATACTTGGCTAAATTGCAG+AGG | + | chr1_1:77346943-77346962 | None:intergenic | 35.0% | |
| TCTGCAATTTAGCCAAGTAT+TGG | - | chr1_1:77346942-77346961 | Msa0045420:intron | 35.0% | |
| AGGCCAAGAAAACCAATTAA+AGG | + | chr1_1:77346993-77347012 | None:intergenic | 35.0% | |
| ! | ACAGGAGTTTTTAACACCTA+CGG | + | chr1_1:77347094-77347113 | None:intergenic | 35.0% |
| ! | TGGAAAACCAATTTTACTCG+AGG | - | chr1_1:77347150-77347169 | Msa0045420:CDS | 35.0% |
| AAGTAAGCCTCGAGTAAAAT+TGG | + | chr1_1:77347160-77347179 | None:intergenic | 35.0% | |
| ! | AATTTTACTCGAGGCTTACT+TGG | - | chr1_1:77347159-77347178 | Msa0045420:CDS | 35.0% |
| GTCATGAATTCTATTGCTAG+AGG | - | chr1_1:77347352-77347371 | Msa0045420:intron | 35.0% | |
| TGTGCAGCAATTTCATTATG+GGG | + | chr1_1:77347412-77347431 | None:intergenic | 35.0% | |
| CTGTGCAGCAATTTCATTAT+GGG | + | chr1_1:77347413-77347432 | None:intergenic | 35.0% | |
| TCTGTGCAGCAATTTCATTA+TGG | + | chr1_1:77347414-77347433 | None:intergenic | 35.0% | |
| GAAGTCTGATAATCTTCTTG+AGG | - | chr1_1:77347468-77347487 | Msa0045420:CDS | 35.0% | |
| GCTCTTGCTTAATGTTCTTG+AGG | + | chr1_1:77343575-77343594 | None:intergenic | 40.0% | |
| TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:77344580-77344599 | Msa0045420:intron | 40.0% | |
| CAAGTCTAAATGTATGCAGC+TGG | + | chr1_1:77344802-77344821 | None:intergenic | 40.0% | |
| CAGCTGCATACATTTAGACT+TGG | - | chr1_1:77344800-77344819 | Msa0045420:intron | 40.0% | |
| ATCTTGTGTAATACTCCCTC+CGG | - | chr1_1:77345062-77345081 | Msa0045420:intron | 40.0% | |
| ACAGAATACATGACTGTGTC+TGG | - | chr1_1:77345485-77345504 | Msa0045420:intron | 40.0% | |
| TAACTTCGGTCAACTGCATT+AGG | - | chr1_1:77345626-77345645 | Msa0045420:intron | 40.0% | |
| AACTTCGGTCAACTGCATTA+GGG | - | chr1_1:77345627-77345646 | Msa0045420:intron | 40.0% | |
| GTCAATATTCGTTTAGGCGA+TGG | - | chr1_1:77345669-77345688 | Msa0045420:intron | 40.0% | |
| ! | GTCAGAAGCTCAGAACATTT+TGG | + | chr1_1:77345810-77345829 | None:intergenic | 40.0% |
| AATAAAGCAGACAACGATGG+AGG | + | chr1_1:77345853-77345872 | None:intergenic | 40.0% | |
| GTGAATAAAGCAGACAACGA+TGG | + | chr1_1:77345856-77345875 | None:intergenic | 40.0% | |
| ! | CAGGTATTTGAAGGTACATC+TGG | - | chr1_1:77345981-77346000 | Msa0045420:intron | 40.0% |
| TTTACGACCGTACAGTTTAC+TGG | - | chr1_1:77346017-77346036 | Msa0045420:intron | 40.0% | |
| TACCTCTCCAGTAAACTGTA+CGG | + | chr1_1:77346027-77346046 | None:intergenic | 40.0% | |
| AGAAAACACAATTGAGCCGA+TGG | - | chr1_1:77346238-77346257 | Msa0045420:intron | 40.0% | |
| ! | TATCATTATCTGGGACGGTT+TGG | + | chr1_1:77346291-77346310 | None:intergenic | 40.0% |
| GCTTAGGTGATAGTTACGAT+TGG | + | chr1_1:77346326-77346345 | None:intergenic | 40.0% | |
| TTCTGCTTAGAAAAAAGGGG+AGG | - | chr1_1:77346519-77346538 | Msa0045420:intron | 40.0% | |
| GAGGGAGTAGAATAGTAATC+AGG | + | chr1_1:77346586-77346605 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_1:77346604-77346623 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr1_1:77346742-77346761 | Msa0045420:intron | 40.0% |
| !!! | CGACACTCATTTTGAAACAG+AGG | - | chr1_1:77346846-77346865 | Msa0045420:intron | 40.0% |
| !! | GAGGGAGTGTTAATTTGTTC+TGG | - | chr1_1:77346865-77346884 | Msa0045420:intron | 40.0% |
| !! | GGAGTGTTAATTTGTTCTGG+AGG | - | chr1_1:77346868-77346887 | Msa0045420:intron | 40.0% |
| !! | GTGTTAATTTGTTCTGGAGG+GGG | - | chr1_1:77346871-77346890 | Msa0045420:intron | 40.0% |
| TTGGCTAAATTGCAGAGGAA+CGG | + | chr1_1:77346938-77346957 | None:intergenic | 40.0% | |
| CTACGGATGTAAACAAGAGA+GGG | + | chr1_1:77347077-77347096 | None:intergenic | 40.0% | |
| CTGTATCATTGGACATGCTT+GGG | - | chr1_1:77347110-77347129 | Msa0045420:intron | 40.0% | |
| ATGCTTGGGCGGATATTTAA+CGG | - | chr1_1:77347124-77347143 | Msa0045420:intron | 40.0% | |
| GAGGCTTACTTGGATATATC+AGG | - | chr1_1:77347169-77347188 | Msa0045420:CDS | 40.0% | |
| CAGGATAGGTTCTATCACTA+GGG | + | chr1_1:77347297-77347316 | None:intergenic | 40.0% | |
| TCAGGATAGGTTCTATCACT+AGG | + | chr1_1:77347298-77347317 | None:intergenic | 40.0% | |
| TAGTGATAGAACCTATCCTG+AGG | - | chr1_1:77347297-77347316 | Msa0045420:intron | 40.0% | |
| AATTTCATTATGGGGGAGAC+CGG | + | chr1_1:77347404-77347423 | None:intergenic | 40.0% | |
| GTGCAGCAATTTCATTATGG+GGG | + | chr1_1:77347411-77347430 | None:intergenic | 40.0% | |
| ! | AGCAAGAGCAGACCAAGTTT+TGG | - | chr1_1:77343586-77343605 | Msa0045420:CDS | 45.0% |
| CACGATGCTCTTCCAAAACT+TGG | + | chr1_1:77343601-77343620 | None:intergenic | 45.0% | |
| TCATAGGGGTGAGCACAAAA+AGG | + | chr1_1:77343714-77343733 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:77343794-77343813 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCATGC+AGG | + | chr1_1:77343848-77343867 | None:intergenic | 45.0% |
| CCTGCATGAAGAGCTAATGA+AGG | - | chr1_1:77343845-77343864 | Msa0045420:CDS | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:77343852-77343871 | Msa0045420:CDS | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr1_1:77344049-77344068 | None:intergenic | 45.0% | |
| ! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:77344268-77344287 | None:intergenic | 45.0% |
| ! | TCCTCTGGTCGTGCTTATTT+TGG | - | chr1_1:77344697-77344716 | Msa0045420:intron | 45.0% |
| ACCAAAATAAGCACGACCAG+AGG | + | chr1_1:77344701-77344720 | None:intergenic | 45.0% | |
| !!! | TCTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:77344700-77344719 | Msa0045420:intron | 45.0% |
| ! | TGCTTACATTTGAGACCGGA+GGG | + | chr1_1:77345080-77345099 | None:intergenic | 45.0% |
| ! | TTGCTTACATTTGAGACCGG+AGG | + | chr1_1:77345081-77345100 | None:intergenic | 45.0% |
| ! | TTGCCTACATTTGAGACCGA+GGG | - | chr1_1:77345196-77345215 | Msa0045420:intron | 45.0% |
| TGGTTTCTCACATACTCCCT+CGG | + | chr1_1:77345215-77345234 | None:intergenic | 45.0% | |
| ! | AGGGAGTATGTGAGAAACCA+GGG | - | chr1_1:77345215-77345234 | Msa0045420:intron | 45.0% |
| ! | ATGACTGTGTCTGGAGTTAC+CGG | - | chr1_1:77345494-77345513 | Msa0045420:intron | 45.0% |
| CTCAAGAATGACCAATGGTC+CGG | + | chr1_1:77345516-77345535 | None:intergenic | 45.0% | |
| GGACAAGTTCTCGAGATTGA+TGG | - | chr1_1:77345705-77345724 | Msa0045420:intron | 45.0% | |
| !! | TCTCGAGATTGATGGCGAAA+AGG | - | chr1_1:77345713-77345732 | Msa0045420:intron | 45.0% |
| AACACAATTGAGCCGATGGT+TGG | - | chr1_1:77346242-77346261 | Msa0045420:intron | 45.0% | |
| !! | ATTATCTGGGACGGTTTGGT+AGG | + | chr1_1:77346287-77346306 | None:intergenic | 45.0% |
| !! | ACAGCAGTTTTGGCATGCTT+AGG | + | chr1_1:77346342-77346361 | None:intergenic | 45.0% |
| TGACATGCAACACAGTCTGA+CGG | + | chr1_1:77346371-77346390 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_1:77346605-77346624 | None:intergenic | 45.0% |
| TGTAAACAAGAGAGGGACAG+AGG | + | chr1_1:77347070-77347089 | None:intergenic | 45.0% | |
| CCTACGGATGTAAACAAGAG+AGG | + | chr1_1:77347078-77347097 | None:intergenic | 45.0% | |
| ! | CCTCTCTTGTTTACATCCGT+AGG | - | chr1_1:77347075-77347094 | Msa0045420:intron | 45.0% |
| CCAAGCATGTCCAATGATAC+AGG | + | chr1_1:77347112-77347131 | None:intergenic | 45.0% | |
| CCTGTATCATTGGACATGCT+TGG | - | chr1_1:77347109-77347128 | Msa0045420:intron | 45.0% | |
| TATCATTGGACATGCTTGGG+CGG | - | chr1_1:77347113-77347132 | Msa0045420:intron | 45.0% | |
| GGTTCTATCACTAGGGTTGA+CGG | + | chr1_1:77347290-77347309 | None:intergenic | 45.0% | |
| CTGTATCATCTCCTCAGGAT+AGG | + | chr1_1:77347311-77347330 | None:intergenic | 45.0% | |
| ! | ATCCCTCTATTTTCAGCTGC+CGG | - | chr1_1:77347382-77347401 | Msa0045420:intron | 45.0% |
| GAAGAGGTTGTCCTTCGAAC+TGG | + | chr1_1:77343512-77343531 | None:intergenic | 50.0% | |
| !! | AGAGCATCGTGTACTAGCAG+AGG | - | chr1_1:77343610-77343629 | Msa0045420:CDS | 50.0% |
| ! | ATTAGCTCTTCATGCAGGCG+AGG | + | chr1_1:77343843-77343862 | None:intergenic | 50.0% |
| AGTAGGCTGAACTGCACTTG+TGG | - | chr1_1:77344014-77344033 | Msa0045420:intron | 50.0% | |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:77344031-77344050 | Msa0045420:intron | 50.0% | |
| ! | GTTGCCTACATTTGAGACCG+AGG | - | chr1_1:77345195-77345214 | Msa0045420:intron | 50.0% |
| ACTCCCTCGGTCTCAAATGT+AGG | + | chr1_1:77345202-77345221 | None:intergenic | 50.0% | |
| ! | GAGGGAGTATGTGAGAAACC+AGG | - | chr1_1:77345214-77345233 | Msa0045420:intron | 50.0% |
| GTTTAGGCGATGGAACTACC+CGG | - | chr1_1:77345679-77345698 | Msa0045420:intron | 50.0% | |
| TCTCGAGAACTTGTCCATGC+CGG | + | chr1_1:77345701-77345720 | None:intergenic | 50.0% | |
| TGGCGAAAAGGCTGTTGTTC+AGG | - | chr1_1:77345725-77345744 | Msa0045420:intron | 50.0% | |
| GACCGTACAGTTTACTGGAG+AGG | - | chr1_1:77346022-77346041 | Msa0045420:intron | 50.0% | |
| ! | ACGGGGGATAACAGCAGTTT+TGG | + | chr1_1:77346352-77346371 | None:intergenic | 50.0% |
| ACATGCAACACAGTCTGACG+GGG | + | chr1_1:77346369-77346388 | None:intergenic | 50.0% | |
| GACATGCAACACAGTCTGAC+GGG | + | chr1_1:77346370-77346389 | None:intergenic | 50.0% | |
| ! | TTCTGGAGGGGGAATTTCTC+AGG | - | chr1_1:77346882-77346901 | Msa0045420:intron | 50.0% |
| ATTGCAGAGGAACGGAGGAT+GGG | + | chr1_1:77346930-77346949 | None:intergenic | 50.0% | |
| AATTGCAGAGGAACGGAGGA+TGG | + | chr1_1:77346931-77346950 | None:intergenic | 50.0% | |
| GCTAAATTGCAGAGGAACGG+AGG | + | chr1_1:77346935-77346954 | None:intergenic | 50.0% | |
| GGGCGGATATTTAACGGTTC+TGG | - | chr1_1:77347130-77347149 | Msa0045420:CDS | 50.0% | |
| CCAGTCTGTATCATCTCCTC+AGG | + | chr1_1:77347316-77347335 | None:intergenic | 50.0% | |
| CCTGAGGAGATGATACAGAC+TGG | - | chr1_1:77347313-77347332 | Msa0045420:intron | 50.0% | |
| GACCGGCAGCTGAAAATAGA+GGG | + | chr1_1:77347387-77347406 | None:intergenic | 50.0% | |
| AGACCGGCAGCTGAAAATAG+AGG | + | chr1_1:77347388-77347407 | None:intergenic | 50.0% | |
| TGCTGCACAGATTTGTCGTC+AGG | - | chr1_1:77347423-77347442 | Msa0045420:intron | 50.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:77344030-77344049 | Msa0045420:intron | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:77344038-77344057 | Msa0045420:intron | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:77344039-77344058 | Msa0045420:intron | 55.0% |
| !! | GAGAGCTTGGTGTAGTCCTC+TGG | - | chr1_1:77344682-77344701 | Msa0045420:intron | 55.0% |
| ATGCAGCTGGGAACACGTTC+AGG | + | chr1_1:77344789-77344808 | None:intergenic | 55.0% | |
| ! | GTCTGGAGTTACCGGACCAT+TGG | - | chr1_1:77345502-77345521 | Msa0045420:intron | 55.0% |
| CTCGAGAACTTGTCCATGCC+GGG | + | chr1_1:77345700-77345719 | None:intergenic | 55.0% | |
| CATGCAACACAGTCTGACGG+GGG | + | chr1_1:77346368-77346387 | None:intergenic | 55.0% | |
| AGAGGGACAGAGGAAGTCAG+AGG | + | chr1_1:77347060-77347079 | None:intergenic | 55.0% | |
| GCACAGATTTGTCGTCAGGC+TGG | - | chr1_1:77347427-77347446 | Msa0045420:intron | 55.0% | |
| GGGACAGAGGAAGTCAGAGG+TGG | + | chr1_1:77347057-77347076 | None:intergenic | 60.0% | |
| GGCGATGGAACTACCCGGCA+TGG | - | chr1_1:77345684-77345703 | Msa0045420:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77343500 | 77347495 | 77343500 | ID=Msa0045420;Name=Msa0045420 |
| chr1_1 | mRNA | 77343500 | 77347495 | 77343500 | ID=Msa0045420-mRNA-1;Parent=Msa0045420;Name=Msa0045420-mRNA-1;_AED=0.41;_eAED=0.46;_QI=0|0.6|0.66|1|1|1|6|0|214 |
| chr1_1 | exon | 77347440 | 77347495 | 77347440 | ID=Msa0045420-mRNA-1:exon:26427;Parent=Msa0045420-mRNA-1 |
| chr1_1 | exon | 77347129 | 77347249 | 77347129 | ID=Msa0045420-mRNA-1:exon:26426;Parent=Msa0045420-mRNA-1 |
| chr1_1 | exon | 77345249 | 77345347 | 77345249 | ID=Msa0045420-mRNA-1:exon:26425;Parent=Msa0045420-mRNA-1 |
| chr1_1 | exon | 77344952 | 77345011 | 77344952 | ID=Msa0045420-mRNA-1:exon:26424;Parent=Msa0045420-mRNA-1 |
| chr1_1 | exon | 77343805 | 77343898 | 77343805 | ID=Msa0045420-mRNA-1:exon:26423;Parent=Msa0045420-mRNA-1 |
| chr1_1 | exon | 77343500 | 77343714 | 77343500 | ID=Msa0045420-mRNA-1:exon:26422;Parent=Msa0045420-mRNA-1 |
| chr1_1 | CDS | 77347440 | 77347495 | 77347440 | ID=Msa0045420-mRNA-1:cds;Parent=Msa0045420-mRNA-1 |
| chr1_1 | CDS | 77347129 | 77347249 | 77347129 | ID=Msa0045420-mRNA-1:cds;Parent=Msa0045420-mRNA-1 |
| chr1_1 | CDS | 77345249 | 77345347 | 77345249 | ID=Msa0045420-mRNA-1:cds;Parent=Msa0045420-mRNA-1 |
| chr1_1 | CDS | 77344952 | 77345011 | 77344952 | ID=Msa0045420-mRNA-1:cds;Parent=Msa0045420-mRNA-1 |
| chr1_1 | CDS | 77343805 | 77343898 | 77343805 | ID=Msa0045420-mRNA-1:cds;Parent=Msa0045420-mRNA-1 |
| chr1_1 | CDS | 77343500 | 77343714 | 77343500 | ID=Msa0045420-mRNA-1:cds;Parent=Msa0045420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
