Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045150 | sp|P42813|RNS1_ARATH | 31.720 | 186 | 113 | 5 | 68 | 248 | 30 | 206 | 1.51e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa0045150 | 0.854090 | 1.551855e-61 | -8.615850e-47 |
| Msa0045090 | Msa0045150 | 0.956376 | 3.415563e-114 | -8.615850e-47 |
| Msa0045100 | Msa0045150 | 0.901420 | 2.728271e-78 | -8.615850e-47 |
| Msa0045120 | Msa0045150 | 0.948730 | 5.282360e-107 | -8.615850e-47 |
| Msa0045140 | Msa0045150 | 0.955683 | 1.723292e-113 | -8.615850e-47 |
| Msa0045150 | Msa0045160 | 0.914608 | 1.569703e-84 | -8.615850e-47 |
| Msa0045150 | Msa0045190 | 0.848203 | 7.117394e-60 | -8.615850e-47 |
| Msa0045150 | Msa0045350 | 0.954286 | 4.162946e-112 | -8.615850e-47 |
| Msa0045150 | Msa0045370 | 0.937797 | 1.930730e-98 | -8.615850e-47 |
| Msa0045150 | Msa0045380 | 0.885816 | 5.868092e-72 | -8.615850e-47 |
| Msa0045150 | Msa0045400 | 0.911422 | 6.195105e-83 | -8.615850e-47 |
| Msa0045150 | Msa0045420 | 0.824045 | 9.984052e-54 | -8.615850e-47 |
| Msa0045150 | Msa0045440 | 0.818280 | 2.128237e-52 | -8.615850e-47 |
| Msa0045150 | Msa0484480 | 0.810338 | 1.211216e-50 | -8.615850e-47 |
| Msa0045150 | Msa1084980 | 0.840592 | 7.926885e-58 | -8.615850e-47 |
| Msa0045150 | Msa1085000 | 0.944177 | 3.146398e-103 | -8.615850e-47 |
| Msa0045150 | Msa1085010 | 0.888326 | 6.519105e-73 | -8.615850e-47 |
| Msa0045150 | Msa1426790 | 0.911223 | 7.753559e-83 | -8.615850e-47 |
| Msa0045150 | Msa1426820 | 0.902447 | 9.604214e-79 | -8.615850e-47 |
| Msa0045150 | Msa1426840 | 0.874491 | 6.477735e-68 | -8.615850e-47 |
| Msa0045150 | Msa1432570 | 0.827805 | 1.277317e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045150 | MtrunA17_Chr6g0479301 | 41.880 | 234 | 124 | 6 | 31 | 257 | 36 | 264 | 2.22e-47 | 161 |
| Msa0045150 | MtrunA17_Chr6g0479341 | 44.845 | 194 | 94 | 8 | 67 | 257 | 70 | 253 | 1.66e-40 | 143 |
| Msa0045150 | MtrunA17_Chr5g0417371 | 34.409 | 186 | 108 | 6 | 68 | 248 | 27 | 203 | 1.02e-27 | 108 |
| Msa0045150 | MtrunA17_Chr2g0333421 | 41.905 | 105 | 61 | 0 | 153 | 257 | 12 | 116 | 6.47e-27 | 103 |
| Msa0045150 | MtrunA17_Chr3g0089081 | 32.432 | 259 | 152 | 11 | 9 | 256 | 4 | 250 | 2.08e-26 | 105 |
| Msa0045150 | MtrunA17_Chr4g0028501 | 35.233 | 193 | 99 | 9 | 67 | 256 | 20 | 189 | 3.47e-24 | 98.2 |
| Msa0045150 | MtrunA17_Chr5g0417391 | 31.532 | 222 | 129 | 8 | 68 | 284 | 29 | 232 | 9.51e-24 | 97.8 |
| Msa0045150 | MtrunA17_Chr5g0417341 | 30.851 | 188 | 113 | 6 | 68 | 248 | 28 | 205 | 4.74e-22 | 92.8 |
| Msa0045150 | MtrunA17_Chr3g0089091 | 34.158 | 202 | 117 | 9 | 59 | 256 | 70 | 259 | 7.58e-22 | 93.2 |
| Msa0045150 | MtrunA17_Chr5g0417321 | 31.016 | 187 | 113 | 6 | 68 | 248 | 28 | 204 | 1.09e-21 | 92.0 |
| Msa0045150 | MtrunA17_Chr5g0417381 | 34.409 | 186 | 108 | 6 | 68 | 248 | 28 | 204 | 6.55e-21 | 89.7 |
| Msa0045150 | MtrunA17_Chr5g0439761 | 30.108 | 186 | 115 | 6 | 63 | 245 | 15 | 188 | 8.50e-21 | 89.0 |
| Msa0045150 | MtrunA17_Chr2g0287471 | 31.088 | 193 | 115 | 7 | 77 | 267 | 166 | 342 | 9.62e-21 | 91.7 |
| Msa0045150 | MtrunA17_Chr6g0483091 | 30.732 | 205 | 127 | 7 | 63 | 261 | 20 | 215 | 8.84e-18 | 81.3 |
| Msa0045150 | MtrunA17_Chr8g0350611 | 31.343 | 201 | 119 | 8 | 65 | 261 | 101 | 286 | 1.12e-17 | 82.0 |
| Msa0045150 | MtrunA17_Chr1g0170111 | 32.212 | 208 | 124 | 8 | 59 | 256 | 89 | 289 | 5.60e-17 | 80.1 |
| Msa0045150 | MtrunA17_Chr2g0287541 | 26.733 | 202 | 126 | 8 | 65 | 264 | 4 | 185 | 7.84e-17 | 77.8 |
| Msa0045150 | MtrunA17_Chr8g0347611 | 29.412 | 187 | 115 | 7 | 68 | 245 | 43 | 221 | 4.55e-16 | 77.0 |
| Msa0045150 | MtrunA17_Chr5g0417401 | 30.693 | 202 | 122 | 8 | 68 | 262 | 28 | 218 | 7.31e-15 | 72.8 |
| Msa0045150 | MtrunA17_Chr8g0339941 | 26.738 | 187 | 116 | 7 | 64 | 245 | 412 | 582 | 1.54e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045150 | AT1G14220.1 | 33.333 | 186 | 110 | 6 | 68 | 248 | 28 | 204 | 1.29e-23 | 97.4 |
| Msa0045150 | AT2G02990.1 | 31.720 | 186 | 113 | 5 | 68 | 248 | 30 | 206 | 1.54e-23 | 97.4 |
| Msa0045150 | AT1G26820.1 | 30.526 | 190 | 118 | 6 | 64 | 248 | 18 | 198 | 5.48e-23 | 95.5 |
| Msa0045150 | AT1G14210.1 | 28.571 | 238 | 142 | 8 | 66 | 289 | 24 | 247 | 3.12e-18 | 83.2 |
| Msa0045150 | AT2G39780.1 | 27.979 | 193 | 122 | 7 | 68 | 251 | 32 | 216 | 1.04e-16 | 79.0 |
Find 75 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGCTGCTTTATTAAATT+TGG | 0.101813 | 1_1:+76844787 | None:intergenic |
| CTATTAACAATTGGCTATTC+TGG | 0.179671 | 1_1:-76844750 | Msa0045150:CDS |
| GTTCAATGCCCTCAGCTTTA+AGG | 0.205857 | 1_1:+76844620 | None:intergenic |
| TTACTCTTCACCATATTTCT+TGG | 0.227128 | 1_1:-76845285 | Msa0045150:CDS |
| TTTGTCTACCTCATCGTTCT+TGG | 0.247372 | 1_1:+76844597 | None:intergenic |
| CAGATTCAATGTAGGAAGTT+TGG | 0.252441 | 1_1:-76844529 | Msa0045150:CDS |
| CAATATCATTCCAAGAAATA+TGG | 0.263470 | 1_1:+76845275 | None:intergenic |
| GAAGACAATGTGCTTCATTA+TGG | 0.339430 | 1_1:+76844558 | None:intergenic |
| AGATTCAATGTAGGAAGTTT+GGG | 0.340685 | 1_1:-76844528 | Msa0045150:CDS |
| CTTAGAGAATTAGAGATTGT+TGG | 0.364788 | 1_1:-76843318 | Msa0045150:CDS |
| CCAAGGACCTTCAAAATTCA+TGG | 0.370264 | 1_1:-76845027 | Msa0045150:CDS |
| GAAAGAAACTTACTGAAAAC+TGG | 0.383534 | 1_1:-76844810 | Msa0045150:CDS |
| TTGTCTACCTCATCGTTCTT+GGG | 0.388218 | 1_1:+76844598 | None:intergenic |
| AACTGAAGACAGTAGCCATC+AGG | 0.408299 | 1_1:+76843285 | None:intergenic |
| CCATACTATGATCATGGAGT+TGG | 0.413274 | 1_1:-76845319 | None:intergenic |
| GCCTTGCCAGTGCAAGTCAT+TGG | 0.416701 | 1_1:+76844976 | None:intergenic |
| ATTCAGCCCCTCGGACGAAA+TGG | 0.419706 | 1_1:-76845183 | Msa0045150:CDS |
| GGAGGTAGTGGTGATGGTGG+TGG | 0.428940 | 1_1:+76845150 | None:intergenic |
| AACAGCGTTTACTTGAAGTA+AGG | 0.430526 | 1_1:-76844501 | Msa0045150:CDS |
| GGAGGTGGAGGTAGTGGTGA+TGG | 0.438073 | 1_1:+76845144 | None:intergenic |
| ATCATGTATCTATTAACAAT+TGG | 0.445466 | 1_1:-76844759 | Msa0045150:CDS |
| AAATCAAATGACGGGACATA+TGG | 0.448815 | 1_1:+76845120 | None:intergenic |
| TATGGAGGAGGTGGAGGTAG+TGG | 0.449115 | 1_1:+76845138 | None:intergenic |
| CATACTATGATCATGGAGTT+GGG | 0.450184 | 1_1:-76845318 | None:intergenic |
| GCCAAATTTAATAAAGCAGC+AGG | 0.452261 | 1_1:-76844788 | Msa0045150:CDS |
| ACAATTGGCTATTCTGGAGT+AGG | 0.475606 | 1_1:-76844744 | Msa0045150:CDS |
| GGGACATATGGAGGAGGTGG+AGG | 0.489705 | 1_1:+76845132 | None:intergenic |
| GACGGGACATATGGAGGAGG+TGG | 0.492749 | 1_1:+76845129 | None:intergenic |
| TGTTTATGTTCTCTCTAACA+TGG | 0.497894 | 1_1:-76845098 | Msa0045150:CDS |
| GGTGGAGGTAGTGGTGATGG+TGG | 0.508338 | 1_1:+76845147 | None:intergenic |
| GGCTATTCTGGAGTAGGGAA+TGG | 0.510092 | 1_1:-76844738 | Msa0045150:CDS |
| TCCTACATTGAATCTGTGGC+TGG | 0.517348 | 1_1:+76844536 | None:intergenic |
| TCTGGAGTAGGGAATGGAAC+AGG | 0.519444 | 1_1:-76844732 | Msa0045150:CDS |
| CAATTGGCTATTCTGGAGTA+GGG | 0.525537 | 1_1:-76844743 | Msa0045150:CDS |
| CCTTCAAAATTCATGGGCTA+TGG | 0.525874 | 1_1:-76845020 | Msa0045150:CDS |
| TCTTCCGAGAGGCTGAATAG+TGG | 0.532726 | 1_1:+76845212 | None:intergenic |
| TCAGAACCAATGACTTGCAC+TGG | 0.534469 | 1_1:-76844982 | Msa0045150:CDS |
| TGTCACGTCTTCTGATTCTC+CGG | 0.535001 | 1_1:-76843511 | Msa0045150:intron |
| AGAGAATTAGAGATTGTTGG+TGG | 0.536458 | 1_1:-76843315 | Msa0045150:CDS |
| CCGAGAGGCTGAATAGTGGT+AGG | 0.539520 | 1_1:+76845216 | None:intergenic |
| ACCGTCGATCTTGCAAAATG+TGG | 0.545122 | 1_1:+76845071 | None:intergenic |
| ACATAAACAAATCAAATGAC+GGG | 0.547951 | 1_1:+76845112 | None:intergenic |
| AACATAAACAAATCAAATGA+CGG | 0.553312 | 1_1:+76845111 | None:intergenic |
| ACCAATGACTTGCACTGGCA+AGG | 0.561773 | 1_1:-76844977 | Msa0045150:CDS |
| GGTAGACAAAGAAGACATGT+TGG | 0.579947 | 1_1:-76844584 | Msa0045150:CDS |
| AAGAAAACGACGGGATTGAG+AGG | 0.586955 | 1_1:+76843548 | None:intergenic |
| CAAGGACCTTCAAAATTCAT+GGG | 0.588081 | 1_1:-76845026 | Msa0045150:CDS |
| GAACAGGCATGGAACATGCT+CGG | 0.589801 | 1_1:-76844716 | Msa0045150:CDS |
| TCGATTGAGAAGAAAACGAC+GGG | 0.590073 | 1_1:+76843539 | None:intergenic |
| CCGTCGATCTTGCAAAATGT+GGG | 0.597550 | 1_1:+76845072 | None:intergenic |
| AACTTCCTACATTGAATCTG+TGG | 0.598001 | 1_1:+76844532 | None:intergenic |
| TAACTCACCATGTTTATGCA+AGG | 0.601403 | 1_1:-76845242 | Msa0045150:CDS |
| GTTGGTGGTATCATCCCTGA+TGG | 0.603706 | 1_1:-76843300 | Msa0045150:CDS |
| AACTCACCATGTTTATGCAA+GGG | 0.605338 | 1_1:-76845241 | Msa0045150:CDS |
| CGAGAGGCTGAATAGTGGTA+GGG | 0.610425 | 1_1:+76845217 | None:intergenic |
| ACTGAAGACAGTAGCCATCA+GGG | 0.611209 | 1_1:+76843286 | None:intergenic |
| TCAAATGACGGGACATATGG+AGG | 0.613975 | 1_1:+76845123 | None:intergenic |
| AGTAGGGAATGGAACAGGCA+TGG | 0.625843 | 1_1:-76844727 | Msa0045150:CDS |
| ATGAACTACCTTAAAGCTGA+GGG | 0.629017 | 1_1:-76844628 | Msa0045150:CDS |
| CATGAACTACCTTAAAGCTG+AGG | 0.634907 | 1_1:-76844629 | Msa0045150:CDS |
| AATGTATAGATCAAGTGCCA+AGG | 0.635818 | 1_1:-76845044 | Msa0045150:CDS |
| TCCAGCCACAGATTCAATGT+AGG | 0.640140 | 1_1:-76844537 | Msa0045150:CDS |
| AGAAATACTATTCAGCCCCT+CGG | 0.644925 | 1_1:-76845192 | Msa0045150:CDS |
| CAAAGTATTCGTTTGCATCG+AGG | 0.647560 | 1_1:+76844686 | None:intergenic |
| AAAAGCAAAGTTGAAGAACA+AGG | 0.648257 | 1_1:+76843344 | None:intergenic |
| TAGGGTCCCTTGCATAAACA+TGG | 0.652145 | 1_1:+76845235 | None:intergenic |
| TGCAAACGAATACTTTGCAG+TGG | 0.654740 | 1_1:-76844680 | Msa0045150:CDS |
| CCTACCACTATTCAGCCTCT+CGG | 0.656651 | 1_1:-76845216 | Msa0045150:CDS |
| AATGACGGGACATATGGAGG+AGG | 0.664965 | 1_1:+76845126 | None:intergenic |
| TCGATCTTGCAAAATGTGGG+AGG | 0.671506 | 1_1:+76845075 | None:intergenic |
| CTCGATTGAGAAGAAAACGA+CGG | 0.679795 | 1_1:+76843538 | None:intergenic |
| CAGGCATGGAACATGCTCGG+CGG | 0.681296 | 1_1:-76844713 | Msa0045150:CDS |
| GAGGTTGATGAAGAAGACGA+CGG | 0.681666 | 1_1:+76843567 | None:intergenic |
| TGAATAGTATTTCTTCCGAG+AGG | 0.694559 | 1_1:+76845201 | None:intergenic |
| CATTGAACCCAAGAACGATG+AGG | 0.720821 | 1_1:-76844605 | Msa0045150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATACTTGTT+TGG | - | chr1_1:76844234-76844253 | Msa0045150:intron | 10.0% |
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:76844338-76844357 | None:intergenic | 10.0% |
| !! | TAAATAAATAAATACTTGTT+TGG | - | chr1_1:76844234-76844253 | Msa0045150:intron | 10.0% |
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:76844338-76844357 | None:intergenic | 10.0% |
| !!! | AAATTTGTCATATAGTTTTA+CGG | + | chr1_1:76843909-76843928 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:76844434-76844453 | Msa0045150:intron | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:76845116-76845135 | Msa0045150:CDS | 15.0% |
| !!! | AAATTTGTCATATAGTTTTA+CGG | + | chr1_1:76843909-76843928 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:76844434-76844453 | Msa0045150:intron | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:76845116-76845135 | Msa0045150:CDS | 15.0% |
| !! | AACATAAACAAATCAAATGA+CGG | + | chr1_1:76843455-76843474 | None:intergenic | 20.0% |
| !! | ATCATGTATCTATTAACAAT+TGG | - | chr1_1:76843804-76843823 | Msa0045150:intron | 20.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:76844529-76844548 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:76844596-76844615 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:76844798-76844817 | None:intergenic | 20.0% |
| !! | AACATAAACAAATCAAATGA+CGG | + | chr1_1:76843455-76843474 | None:intergenic | 20.0% |
| !! | ATCATGTATCTATTAACAAT+TGG | - | chr1_1:76843804-76843823 | Msa0045150:intron | 20.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:76844529-76844548 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:76844596-76844615 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:76844798-76844817 | None:intergenic | 20.0% |
| ! | CAATATCATTCCAAGAAATA+TGG | + | chr1_1:76843291-76843310 | None:intergenic | 25.0% |
| ! | ACATAAACAAATCAAATGAC+GGG | + | chr1_1:76843454-76843473 | None:intergenic | 25.0% |
| !!! | GGTTCTGAGTTTTTTTTATT+GGG | + | chr1_1:76843569-76843588 | None:intergenic | 25.0% |
| !!! | TGGTTCTGAGTTTTTTTTAT+TGG | + | chr1_1:76843570-76843589 | None:intergenic | 25.0% |
| !! | TCTTCAGATTCTGAAAAATT+CGG | - | chr1_1:76843730-76843749 | Msa0045150:intron | 25.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:76844594-76844613 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:76844595-76844614 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:76844630-76844649 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:76844631-76844650 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:76844728-76844747 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:76844729-76844748 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:76844799-76844818 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:76844797-76844816 | Msa0045150:CDS | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:76844881-76844900 | None:intergenic | 25.0% |
| ! | CAATATCATTCCAAGAAATA+TGG | + | chr1_1:76843291-76843310 | None:intergenic | 25.0% |
| ! | ACATAAACAAATCAAATGAC+GGG | + | chr1_1:76843454-76843473 | None:intergenic | 25.0% |
| !!! | GGTTCTGAGTTTTTTTTATT+GGG | + | chr1_1:76843569-76843588 | None:intergenic | 25.0% |
| !!! | TGGTTCTGAGTTTTTTTTAT+TGG | + | chr1_1:76843570-76843589 | None:intergenic | 25.0% |
| !! | TCTTCAGATTCTGAAAAATT+CGG | - | chr1_1:76843730-76843749 | Msa0045150:intron | 25.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:76844594-76844613 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:76844595-76844614 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:76844630-76844649 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:76844631-76844650 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:76844728-76844747 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:76844729-76844748 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:76844799-76844818 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:76844797-76844816 | Msa0045150:CDS | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:76844881-76844900 | None:intergenic | 25.0% |
| TTACTCTTCACCATATTTCT+TGG | - | chr1_1:76843278-76843297 | Msa0045150:CDS | 30.0% | |
| TGTTTATGTTCTCTCTAACA+TGG | - | chr1_1:76843465-76843484 | Msa0045150:intron | 30.0% | |
| ! | CTTCAGATTCTGAAAAATTC+GGG | - | chr1_1:76843731-76843750 | Msa0045150:intron | 30.0% |
| GAAAGAAACTTACTGAAAAC+TGG | - | chr1_1:76843753-76843772 | Msa0045150:intron | 30.0% | |
| !! | TCCTGCTGCTTTATTAAATT+TGG | + | chr1_1:76843779-76843798 | None:intergenic | 30.0% |
| CTATTAACAATTGGCTATTC+TGG | - | chr1_1:76843813-76843832 | Msa0045150:intron | 30.0% | |
| AGATTCAATGTAGGAAGTTT+GGG | - | chr1_1:76844035-76844054 | Msa0045150:intron | 30.0% | |
| TCCAATTTAAATACGATGAG+TGG | - | chr1_1:76844268-76844287 | Msa0045150:intron | 30.0% | |
| TCCACTCATCGTATTTAAAT+TGG | + | chr1_1:76844272-76844291 | None:intergenic | 30.0% | |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:76844664-76844683 | Msa0045150:CDS | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:76844697-76844716 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:76844727-76844746 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:76844773-76844792 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:76844774-76844793 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:76844836-76844855 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:76845157-76845176 | Msa0045150:CDS | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:76845222-76845241 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:76845245-76845264 | Msa0045150:CDS | 30.0% | |
| TTACTCTTCACCATATTTCT+TGG | - | chr1_1:76843278-76843297 | Msa0045150:CDS | 30.0% | |
| TGTTTATGTTCTCTCTAACA+TGG | - | chr1_1:76843465-76843484 | Msa0045150:intron | 30.0% | |
| ! | CTTCAGATTCTGAAAAATTC+GGG | - | chr1_1:76843731-76843750 | Msa0045150:intron | 30.0% |
| GAAAGAAACTTACTGAAAAC+TGG | - | chr1_1:76843753-76843772 | Msa0045150:intron | 30.0% | |
| !! | TCCTGCTGCTTTATTAAATT+TGG | + | chr1_1:76843779-76843798 | None:intergenic | 30.0% |
| CTATTAACAATTGGCTATTC+TGG | - | chr1_1:76843813-76843832 | Msa0045150:intron | 30.0% | |
| AGATTCAATGTAGGAAGTTT+GGG | - | chr1_1:76844035-76844054 | Msa0045150:intron | 30.0% | |
| TCCAATTTAAATACGATGAG+TGG | - | chr1_1:76844268-76844287 | Msa0045150:intron | 30.0% | |
| TCCACTCATCGTATTTAAAT+TGG | + | chr1_1:76844272-76844291 | None:intergenic | 30.0% | |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:76844664-76844683 | Msa0045150:CDS | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:76844697-76844716 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:76844727-76844746 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:76844773-76844792 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:76844774-76844793 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:76844836-76844855 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:76845157-76845176 | Msa0045150:CDS | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:76845222-76845241 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:76845245-76845264 | Msa0045150:CDS | 30.0% | |
| TAACTCACCATGTTTATGCA+AGG | - | chr1_1:76843321-76843340 | Msa0045150:CDS | 35.0% | |
| AACTCACCATGTTTATGCAA+GGG | - | chr1_1:76843322-76843341 | Msa0045150:CDS | 35.0% | |
| TGAATAGTATTTCTTCCGAG+AGG | + | chr1_1:76843365-76843384 | None:intergenic | 35.0% | |
| ! | AAATCAAATGACGGGACATA+TGG | + | chr1_1:76843446-76843465 | None:intergenic | 35.0% |
| AATGTATAGATCAAGTGCCA+AGG | - | chr1_1:76843519-76843538 | Msa0045150:CDS | 35.0% | |
| CAAGGACCTTCAAAATTCAT+GGG | - | chr1_1:76843537-76843556 | Msa0045150:CDS | 35.0% | |
| GCCAAATTTAATAAAGCAGC+AGG | - | chr1_1:76843775-76843794 | Msa0045150:intron | 35.0% | |
| ATGAACTACCTTAAAGCTGA+GGG | - | chr1_1:76843935-76843954 | Msa0045150:intron | 35.0% | |
| GAAGACAATGTGCTTCATTA+TGG | + | chr1_1:76844008-76844027 | None:intergenic | 35.0% | |
| AACTTCCTACATTGAATCTG+TGG | + | chr1_1:76844034-76844053 | None:intergenic | 35.0% | |
| CAGATTCAATGTAGGAAGTT+TGG | - | chr1_1:76844034-76844053 | Msa0045150:intron | 35.0% | |
| AACAGCGTTTACTTGAAGTA+AGG | - | chr1_1:76844062-76844081 | Msa0045150:intron | 35.0% | |
| ! | CTGTCACAACTTTTGTATGT+CGG | + | chr1_1:76844112-76844131 | None:intergenic | 35.0% |
| CAGAATATTATGCTCTTCTC+TGG | + | chr1_1:76844151-76844170 | None:intergenic | 35.0% | |
| TTTAAATACGATGAGTGGAG+TGG | - | chr1_1:76844273-76844292 | Msa0045150:intron | 35.0% | |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:76844661-76844680 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:76844739-76844758 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:76844826-76844845 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:76844891-76844910 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:76845074-76845093 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:76845145-76845164 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:76845146-76845165 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:76845248-76845267 | Msa0045150:CDS | 35.0% | |
| TAACTCACCATGTTTATGCA+AGG | - | chr1_1:76843321-76843340 | Msa0045150:CDS | 35.0% | |
| AACTCACCATGTTTATGCAA+GGG | - | chr1_1:76843322-76843341 | Msa0045150:CDS | 35.0% | |
| TGAATAGTATTTCTTCCGAG+AGG | + | chr1_1:76843365-76843384 | None:intergenic | 35.0% | |
| ! | AAATCAAATGACGGGACATA+TGG | + | chr1_1:76843446-76843465 | None:intergenic | 35.0% |
| AATGTATAGATCAAGTGCCA+AGG | - | chr1_1:76843519-76843538 | Msa0045150:CDS | 35.0% | |
| CAAGGACCTTCAAAATTCAT+GGG | - | chr1_1:76843537-76843556 | Msa0045150:CDS | 35.0% | |
| GCCAAATTTAATAAAGCAGC+AGG | - | chr1_1:76843775-76843794 | Msa0045150:intron | 35.0% | |
| ATGAACTACCTTAAAGCTGA+GGG | - | chr1_1:76843935-76843954 | Msa0045150:intron | 35.0% | |
| GAAGACAATGTGCTTCATTA+TGG | + | chr1_1:76844008-76844027 | None:intergenic | 35.0% | |
| AACTTCCTACATTGAATCTG+TGG | + | chr1_1:76844034-76844053 | None:intergenic | 35.0% | |
| CAGATTCAATGTAGGAAGTT+TGG | - | chr1_1:76844034-76844053 | Msa0045150:intron | 35.0% | |
| AACAGCGTTTACTTGAAGTA+AGG | - | chr1_1:76844062-76844081 | Msa0045150:intron | 35.0% | |
| ! | CTGTCACAACTTTTGTATGT+CGG | + | chr1_1:76844112-76844131 | None:intergenic | 35.0% |
| CAGAATATTATGCTCTTCTC+TGG | + | chr1_1:76844151-76844170 | None:intergenic | 35.0% | |
| TTTAAATACGATGAGTGGAG+TGG | - | chr1_1:76844273-76844292 | Msa0045150:intron | 35.0% | |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:76844661-76844680 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:76844739-76844758 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:76844826-76844845 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:76844891-76844910 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:76845074-76845093 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:76845145-76845164 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:76845146-76845165 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:76845248-76845267 | Msa0045150:CDS | 35.0% | |
| AGAAATACTATTCAGCCCCT+CGG | - | chr1_1:76843371-76843390 | Msa0045150:intron | 40.0% | |
| ! | TCTTTTTCCATTTCGTCCGA+GGG | + | chr1_1:76843390-76843409 | None:intergenic | 40.0% |
| !! | CCATGAATTTTGAAGGTCCT+TGG | + | chr1_1:76843539-76843558 | None:intergenic | 40.0% |
| CCAAGGACCTTCAAAATTCA+TGG | - | chr1_1:76843536-76843555 | Msa0045150:CDS | 40.0% | |
| ! | CCATAGCCCATGAATTTTGA+AGG | + | chr1_1:76843546-76843565 | None:intergenic | 40.0% |
| ! | CCTTCAAAATTCATGGGCTA+TGG | - | chr1_1:76843543-76843562 | Msa0045150:CDS | 40.0% |
| !! | ACAATTGGCTATTCTGGAGT+AGG | - | chr1_1:76843819-76843838 | Msa0045150:intron | 40.0% |
| !! | CAATTGGCTATTCTGGAGTA+GGG | - | chr1_1:76843820-76843839 | Msa0045150:intron | 40.0% |
| ! | CAAAGTATTCGTTTGCATCG+AGG | + | chr1_1:76843880-76843899 | None:intergenic | 40.0% |
| TGCAAACGAATACTTTGCAG+TGG | - | chr1_1:76843883-76843902 | Msa0045150:intron | 40.0% | |
| CATGAACTACCTTAAAGCTG+AGG | - | chr1_1:76843934-76843953 | Msa0045150:intron | 40.0% | |
| TTGTCTACCTCATCGTTCTT+GGG | + | chr1_1:76843968-76843987 | None:intergenic | 40.0% | |
| TTTGTCTACCTCATCGTTCT+TGG | + | chr1_1:76843969-76843988 | None:intergenic | 40.0% | |
| GGTAGACAAAGAAGACATGT+TGG | - | chr1_1:76843979-76843998 | Msa0045150:intron | 40.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:76844758-76844777 | Msa0045150:CDS | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:76844767-76844786 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:76844852-76844871 | Msa0045150:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:76844866-76844885 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:76845027-76845046 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:76845028-76845047 | None:intergenic | 40.0% | |
| AGAAATACTATTCAGCCCCT+CGG | - | chr1_1:76843371-76843390 | Msa0045150:intron | 40.0% | |
| ! | TCTTTTTCCATTTCGTCCGA+GGG | + | chr1_1:76843390-76843409 | None:intergenic | 40.0% |
| !! | CCATGAATTTTGAAGGTCCT+TGG | + | chr1_1:76843539-76843558 | None:intergenic | 40.0% |
| CCAAGGACCTTCAAAATTCA+TGG | - | chr1_1:76843536-76843555 | Msa0045150:CDS | 40.0% | |
| ! | CCATAGCCCATGAATTTTGA+AGG | + | chr1_1:76843546-76843565 | None:intergenic | 40.0% |
| ! | CCTTCAAAATTCATGGGCTA+TGG | - | chr1_1:76843543-76843562 | Msa0045150:CDS | 40.0% |
| !! | ACAATTGGCTATTCTGGAGT+AGG | - | chr1_1:76843819-76843838 | Msa0045150:intron | 40.0% |
| !! | CAATTGGCTATTCTGGAGTA+GGG | - | chr1_1:76843820-76843839 | Msa0045150:intron | 40.0% |
| ! | CAAAGTATTCGTTTGCATCG+AGG | + | chr1_1:76843880-76843899 | None:intergenic | 40.0% |
| TGCAAACGAATACTTTGCAG+TGG | - | chr1_1:76843883-76843902 | Msa0045150:intron | 40.0% | |
| CATGAACTACCTTAAAGCTG+AGG | - | chr1_1:76843934-76843953 | Msa0045150:intron | 40.0% | |
| TTGTCTACCTCATCGTTCTT+GGG | + | chr1_1:76843968-76843987 | None:intergenic | 40.0% | |
| TTTGTCTACCTCATCGTTCT+TGG | + | chr1_1:76843969-76843988 | None:intergenic | 40.0% | |
| GGTAGACAAAGAAGACATGT+TGG | - | chr1_1:76843979-76843998 | Msa0045150:intron | 40.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:76844758-76844777 | Msa0045150:CDS | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:76844767-76844786 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:76844852-76844871 | Msa0045150:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:76844866-76844885 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:76845027-76845046 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:76845028-76845047 | None:intergenic | 40.0% | |
| TAGGGTCCCTTGCATAAACA+TGG | + | chr1_1:76843331-76843350 | None:intergenic | 45.0% | |
| ! | CTTTTTCCATTTCGTCCGAG+GGG | + | chr1_1:76843389-76843408 | None:intergenic | 45.0% |
| ! | GTCTTTTTCCATTTCGTCCG+AGG | + | chr1_1:76843391-76843410 | None:intergenic | 45.0% |
| ! | TCAAATGACGGGACATATGG+AGG | + | chr1_1:76843443-76843462 | None:intergenic | 45.0% |
| TCGATCTTGCAAAATGTGGG+AGG | + | chr1_1:76843491-76843510 | None:intergenic | 45.0% | |
| CCGTCGATCTTGCAAAATGT+GGG | + | chr1_1:76843494-76843513 | None:intergenic | 45.0% | |
| ! | CCCACATTTTGCAAGATCGA+CGG | - | chr1_1:76843491-76843510 | Msa0045150:intron | 45.0% |
| ACCGTCGATCTTGCAAAATG+TGG | + | chr1_1:76843495-76843514 | None:intergenic | 45.0% | |
| ! | TCAGAACCAATGACTTGCAC+TGG | - | chr1_1:76843581-76843600 | Msa0045150:CDS | 45.0% |
| GTTCAATGCCCTCAGCTTTA+AGG | + | chr1_1:76843946-76843965 | None:intergenic | 45.0% | |
| CATTGAACCCAAGAACGATG+AGG | - | chr1_1:76843958-76843977 | Msa0045150:intron | 45.0% | |
| TCCAGCCACAGATTCAATGT+AGG | - | chr1_1:76844026-76844045 | Msa0045150:intron | 45.0% | |
| TCCTACATTGAATCTGTGGC+TGG | + | chr1_1:76844030-76844049 | None:intergenic | 45.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:76844587-76844606 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:76844647-76844666 | Msa0045150:CDS | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:76844690-76844709 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:76844873-76844892 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:76844980-76844999 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:76844990-76845009 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:76844999-76845018 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:76845018-76845037 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:76845052-76845071 | Msa0045150:CDS | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:76845280-76845299 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:76845281-76845300 | None:intergenic | 45.0% | |
| TAGGGTCCCTTGCATAAACA+TGG | + | chr1_1:76843331-76843350 | None:intergenic | 45.0% | |
| ! | CTTTTTCCATTTCGTCCGAG+GGG | + | chr1_1:76843389-76843408 | None:intergenic | 45.0% |
| ! | GTCTTTTTCCATTTCGTCCG+AGG | + | chr1_1:76843391-76843410 | None:intergenic | 45.0% |
| ! | TCAAATGACGGGACATATGG+AGG | + | chr1_1:76843443-76843462 | None:intergenic | 45.0% |
| TCGATCTTGCAAAATGTGGG+AGG | + | chr1_1:76843491-76843510 | None:intergenic | 45.0% | |
| CCGTCGATCTTGCAAAATGT+GGG | + | chr1_1:76843494-76843513 | None:intergenic | 45.0% | |
| ! | CCCACATTTTGCAAGATCGA+CGG | - | chr1_1:76843491-76843510 | Msa0045150:intron | 45.0% |
| ACCGTCGATCTTGCAAAATG+TGG | + | chr1_1:76843495-76843514 | None:intergenic | 45.0% | |
| ! | TCAGAACCAATGACTTGCAC+TGG | - | chr1_1:76843581-76843600 | Msa0045150:CDS | 45.0% |
| GTTCAATGCCCTCAGCTTTA+AGG | + | chr1_1:76843946-76843965 | None:intergenic | 45.0% | |
| CATTGAACCCAAGAACGATG+AGG | - | chr1_1:76843958-76843977 | Msa0045150:intron | 45.0% | |
| TCCAGCCACAGATTCAATGT+AGG | - | chr1_1:76844026-76844045 | Msa0045150:intron | 45.0% | |
| TCCTACATTGAATCTGTGGC+TGG | + | chr1_1:76844030-76844049 | None:intergenic | 45.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:76844587-76844606 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:76844647-76844666 | Msa0045150:CDS | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:76844690-76844709 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:76844873-76844892 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:76844980-76844999 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:76844990-76845009 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:76844999-76845018 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:76845018-76845037 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:76845052-76845071 | Msa0045150:CDS | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:76845280-76845299 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:76845281-76845300 | None:intergenic | 45.0% | |
| CGAGAGGCTGAATAGTGGTA+GGG | + | chr1_1:76843349-76843368 | None:intergenic | 50.0% | |
| CCTACCACTATTCAGCCTCT+CGG | - | chr1_1:76843347-76843366 | Msa0045150:CDS | 50.0% | |
| TCTTCCGAGAGGCTGAATAG+TGG | + | chr1_1:76843354-76843373 | None:intergenic | 50.0% | |
| ! | AATGACGGGACATATGGAGG+AGG | + | chr1_1:76843440-76843459 | None:intergenic | 50.0% |
| ! | ACCAATGACTTGCACTGGCA+AGG | - | chr1_1:76843586-76843605 | Msa0045150:CDS | 50.0% |
| !! | GGCTATTCTGGAGTAGGGAA+TGG | - | chr1_1:76843825-76843844 | Msa0045150:intron | 50.0% |
| ! | TCTGGAGTAGGGAATGGAAC+AGG | - | chr1_1:76843831-76843850 | Msa0045150:intron | 50.0% |
| AGTAGGGAATGGAACAGGCA+TGG | - | chr1_1:76843836-76843855 | Msa0045150:intron | 50.0% | |
| GAACAGGCATGGAACATGCT+CGG | - | chr1_1:76843847-76843866 | Msa0045150:intron | 50.0% | |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:76844586-76844605 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:76844903-76844922 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:76844939-76844958 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:76844950-76844969 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:76844951-76844970 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:76844981-76845000 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:76844984-76845003 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:76845263-76845282 | Msa0045150:CDS | 50.0% |
| CGAGAGGCTGAATAGTGGTA+GGG | + | chr1_1:76843349-76843368 | None:intergenic | 50.0% | |
| CCTACCACTATTCAGCCTCT+CGG | - | chr1_1:76843347-76843366 | Msa0045150:CDS | 50.0% | |
| TCTTCCGAGAGGCTGAATAG+TGG | + | chr1_1:76843354-76843373 | None:intergenic | 50.0% | |
| ! | AATGACGGGACATATGGAGG+AGG | + | chr1_1:76843440-76843459 | None:intergenic | 50.0% |
| ! | ACCAATGACTTGCACTGGCA+AGG | - | chr1_1:76843586-76843605 | Msa0045150:CDS | 50.0% |
| !! | GGCTATTCTGGAGTAGGGAA+TGG | - | chr1_1:76843825-76843844 | Msa0045150:intron | 50.0% |
| ! | TCTGGAGTAGGGAATGGAAC+AGG | - | chr1_1:76843831-76843850 | Msa0045150:intron | 50.0% |
| AGTAGGGAATGGAACAGGCA+TGG | - | chr1_1:76843836-76843855 | Msa0045150:intron | 50.0% | |
| GAACAGGCATGGAACATGCT+CGG | - | chr1_1:76843847-76843866 | Msa0045150:intron | 50.0% | |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:76844586-76844605 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:76844903-76844922 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:76844939-76844958 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:76844950-76844969 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:76844951-76844970 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:76844981-76845000 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:76844984-76845003 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:76845263-76845282 | Msa0045150:CDS | 50.0% |
| CCGAGAGGCTGAATAGTGGT+AGG | + | chr1_1:76843350-76843369 | None:intergenic | 55.0% | |
| ATTCAGCCCCTCGGACGAAA+TGG | - | chr1_1:76843380-76843399 | Msa0045150:intron | 55.0% | |
| TATGGAGGAGGTGGAGGTAG+TGG | + | chr1_1:76843428-76843447 | None:intergenic | 55.0% | |
| GCCTTGCCAGTGCAAGTCAT+TGG | + | chr1_1:76843590-76843609 | None:intergenic | 55.0% | |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:76844904-76844923 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:76844936-76844955 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:76844961-76844980 | None:intergenic | 55.0% | |
| CCGAGAGGCTGAATAGTGGT+AGG | + | chr1_1:76843350-76843369 | None:intergenic | 55.0% | |
| ATTCAGCCCCTCGGACGAAA+TGG | - | chr1_1:76843380-76843399 | Msa0045150:intron | 55.0% | |
| TATGGAGGAGGTGGAGGTAG+TGG | + | chr1_1:76843428-76843447 | None:intergenic | 55.0% | |
| GCCTTGCCAGTGCAAGTCAT+TGG | + | chr1_1:76843590-76843609 | None:intergenic | 55.0% | |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:76844904-76844923 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:76844936-76844955 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:76844961-76844980 | None:intergenic | 55.0% | |
| !! | GGAGGTAGTGGTGATGGTGG+TGG | + | chr1_1:76843416-76843435 | None:intergenic | 60.0% |
| !! | GGTGGAGGTAGTGGTGATGG+TGG | + | chr1_1:76843419-76843438 | None:intergenic | 60.0% |
| ! | GGAGGTGGAGGTAGTGGTGA+TGG | + | chr1_1:76843422-76843441 | None:intergenic | 60.0% |
| GGGACATATGGAGGAGGTGG+AGG | + | chr1_1:76843434-76843453 | None:intergenic | 60.0% | |
| GACGGGACATATGGAGGAGG+TGG | + | chr1_1:76843437-76843456 | None:intergenic | 60.0% | |
| CAGGCATGGAACATGCTCGG+CGG | - | chr1_1:76843850-76843869 | Msa0045150:intron | 60.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:76844581-76844600 | None:intergenic | 60.0% | |
| !! | GGAGGTAGTGGTGATGGTGG+TGG | + | chr1_1:76843416-76843435 | None:intergenic | 60.0% |
| !! | GGTGGAGGTAGTGGTGATGG+TGG | + | chr1_1:76843419-76843438 | None:intergenic | 60.0% |
| ! | GGAGGTGGAGGTAGTGGTGA+TGG | + | chr1_1:76843422-76843441 | None:intergenic | 60.0% |
| GGGACATATGGAGGAGGTGG+AGG | + | chr1_1:76843434-76843453 | None:intergenic | 60.0% | |
| GACGGGACATATGGAGGAGG+TGG | + | chr1_1:76843437-76843456 | None:intergenic | 60.0% | |
| CAGGCATGGAACATGCTCGG+CGG | - | chr1_1:76843850-76843869 | Msa0045150:intron | 60.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:76844581-76844600 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:76844577-76844596 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:76844578-76844597 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:76844912-76844931 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:76844932-76844951 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:76844933-76844952 | None:intergenic | 65.0% |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:76844577-76844596 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:76844578-76844597 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:76844912-76844931 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:76844932-76844951 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:76844933-76844952 | None:intergenic | 65.0% |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:76844575-76844594 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:76844576-76844595 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:76844920-76844939 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:76844921-76844940 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:76844929-76844948 | None:intergenic | 70.0% | |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:76844575-76844594 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:76844576-76844595 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:76844920-76844939 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:76844921-76844940 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:76844929-76844948 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76843257 | 76845328 | 76843257 | ID=Msa0045150;Name=Msa0045150 |
| chr1_1 | mRNA | 76843257 | 76845328 | 76843257 | ID=Msa0045150-mRNA-1;Parent=Msa0045150;Name=Msa0045150-mRNA-1;_AED=0.93;_eAED=0.93;_QI=0|0|0|0.25|1|1|4|0|332 |
| chr1_1 | exon | 76844951 | 76845328 | 76844951 | ID=Msa0045150-mRNA-1:exon:26273;Parent=Msa0045150-mRNA-1 |
| chr1_1 | exon | 76844455 | 76844848 | 76844455 | ID=Msa0045150-mRNA-1:exon:26272;Parent=Msa0045150-mRNA-1 |
| chr1_1 | exon | 76843512 | 76843621 | 76843512 | ID=Msa0045150-mRNA-1:exon:26271;Parent=Msa0045150-mRNA-1 |
| chr1_1 | exon | 76843257 | 76843373 | 76843257 | ID=Msa0045150-mRNA-1:exon:26270;Parent=Msa0045150-mRNA-1 |
| chr1_1 | CDS | 76844951 | 76845328 | 76844951 | ID=Msa0045150-mRNA-1:cds;Parent=Msa0045150-mRNA-1 |
| chr1_1 | CDS | 76844455 | 76844848 | 76844455 | ID=Msa0045150-mRNA-1:cds;Parent=Msa0045150-mRNA-1 |
| chr1_1 | CDS | 76843512 | 76843621 | 76843512 | ID=Msa0045150-mRNA-1:cds;Parent=Msa0045150-mRNA-1 |
| chr1_1 | CDS | 76843257 | 76843373 | 76843257 | ID=Msa0045150-mRNA-1:cds;Parent=Msa0045150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
