AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045160 MtrunA17_Chr1g0211291 91.419 303 13 1 209 511 200 489 0.0 564
Msa0045160 MtrunA17_Chr1g0211291 69.231 78 16 1 141 218 17 86 1.08e-23 103
Msa0045160 MtrunA17_Chr7g0250051 90.429 303 16 1 209 511 198 487 0.0 558
Msa0045160 MtrunA17_Chr7g0250051 69.231 78 16 1 141 218 16 85 1.27e-23 103
Msa0045160 MtrunA17_Chr2g0301881 72.152 79 17 1 45 118 266 344 4.62e-24 106
Msa0045160 MtrunA17_Chr4g0015651 29.730 185 127 2 211 393 188 371 2.75e-18 87.8
Msa0045160 MtrunA17_Chr4g0016741 29.730 185 127 2 211 393 188 371 2.75e-18 87.8
Msa0045160 MtrunA17_CPg0492941 29.730 185 127 2 211 393 188 371 2.75e-18 87.8
Msa0045160 MtrunA17_Chr4g0000341 32.075 159 102 2 235 388 303 460 2.96e-17 84.7
Msa0045160 MtrunA17_Chr4g0016371 29.545 220 140 4 237 448 185 397 1.60e-15 79.0
Msa0045160 MtrunA17_Chr3g0090971 29.545 220 140 4 237 448 224 436 1.84e-15 79.0
Msa0045160 MtrunA17_CPg0493401 29.545 220 140 4 237 448 224 436 2.10e-15 78.6
Msa0045160 MtrunA17_Chr7g0229391 29.224 219 140 4 238 448 225 436 8.04e-15 77.0
Msa0045160 MtrunA17_MTg0490471 28.108 185 130 2 211 393 198 381 1.41e-14 76.3
Msa0045160 MtrunA17_Chr1g0208761 26.872 227 152 3 218 436 260 480 1.54e-14 76.3
Msa0045160 MtrunA17_Chr1g0208751 27.632 228 149 4 218 436 257 477 3.07e-14 75.1
Msa0045160 MtrunA17_Chr2g0278821 28.750 160 106 3 253 410 11 164 4.91e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045160 AT4G38510.5 90.365 301 16 1 211 511 207 494 0.0 553
Msa0045160 AT4G38510.5 84.746 59 9 0 141 199 23 81 1.62e-23 103
Msa0045160 AT4G38510.1 90.365 301 16 1 211 511 200 487 0.0 553
Msa0045160 AT4G38510.1 84.746 59 9 0 141 199 16 74 1.59e-23 103
Msa0045160 AT4G38510.3 90.365 301 16 1 211 511 200 487 0.0 553
Msa0045160 AT4G38510.3 84.746 59 9 0 141 199 16 74 1.59e-23 103
Msa0045160 AT4G38510.4 90.365 301 16 1 211 511 200 487 0.0 553
Msa0045160 AT4G38510.4 84.746 59 9 0 141 199 16 74 1.59e-23 103
Msa0045160 AT4G38510.2 90.365 301 16 1 211 511 200 487 0.0 553
Msa0045160 AT4G38510.2 84.746 59 9 0 141 199 16 74 1.59e-23 103
Msa0045160 AT1G20260.1 90.268 298 16 1 212 509 201 485 0.0 548
Msa0045160 AT1G20260.1 66.667 78 18 1 141 218 15 84 1.03e-22 101
Msa0045160 AT1G76030.1 90.268 298 16 1 212 509 200 484 0.0 548
Msa0045160 AT1G76030.1 63.529 85 23 1 134 218 8 84 8.02e-23 102
Msa0045160 ATCG00120.1 29.189 185 128 2 211 393 188 371 3.10e-18 88.2
Msa0045160 AT1G79940.4 60.494 81 27 2 43 118 264 344 5.76e-18 87.4
Msa0045160 AT1G79940.2 60.494 81 27 2 43 118 264 344 5.97e-18 87.8
Msa0045160 AT1G79940.3 60.494 81 27 2 43 118 264 344 5.97e-18 87.8
Msa0045160 AT1G79940.1 60.494 81 27 2 43 118 264 344 5.97e-18 87.8
Msa0045160 AT1G78900.1 32.075 159 102 2 235 388 302 459 3.87e-17 85.1
Msa0045160 AT1G78900.2 32.075 159 102 2 235 388 302 459 3.87e-17 85.1
Msa0045160 ATCG00480.1 29.224 219 142 3 237 448 224 436 1.87e-16 82.4
Msa0045160 AT2G07698.1 28.649 185 129 2 211 393 468 651 2.19e-15 79.7
Msa0045160 ATMG01190.1 28.649 185 129 2 211 393 198 381 3.78e-15 78.6
Msa0045160 AT5G08690.1 28.384 229 146 5 218 436 257 477 7.41e-15 77.8
Msa0045160 AT5G08670.1 28.384 229 146 5 218 436 257 477 7.61e-15 77.8
Msa0045160 AT5G08680.1 28.384 229 146 5 218 436 260 480 8.82e-15 77.4
Msa0045160 AT4G21180.2 49.451 91 37 2 33 118 178 264 2.32e-13 73.2
Msa0045160 AT4G21180.1 49.451 91 37 2 33 118 258 344 3.14e-13 72.8

Find 121 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGACAATCTCTTGATATT+TGG 0.086118 1_1:+76862784 None:intergenic
GCATGGTTAGAATTGGAATT+TGG 0.112862 1_1:+76859922 None:intergenic
CCTCTTGGTCGTGCTTATTT+TGG 0.178155 1_1:-76863737 Msa0045160:CDS
TCTTACTACTGCTGAATATC+TGG 0.262357 1_1:-76860373 Msa0045160:CDS
TTGACAATCTCTTGATATTT+GGG 0.268902 1_1:+76862785 None:intergenic
CATGGTTAGAATTGGAATTT+GGG 0.316289 1_1:+76859923 None:intergenic
CCAGGATAACCACGTCTTCC+TGG 0.316708 1_1:+76860017 None:intergenic
AGCAAGAGCAGACCAAGTTT+TGG 0.325497 1_1:-76864860 Msa0045160:CDS
TCACCACTGCAGAGTGCTAT+TGG 0.329482 1_1:-76859006 Msa0045160:intron
TCATTTGGCATGGTTAGAAT+TGG 0.334129 1_1:+76859915 None:intergenic
TGCGGGTGTCGTAGGCTCCC+TGG 0.338118 1_1:+76858595 None:intergenic
CACCACTGCAGAGTGCTATT+GGG 0.340834 1_1:-76859005 Msa0045160:intron
CAGGTATTTGAAGGTACATC+TGG 0.345618 1_1:-76862455 Msa0045160:intron
GAGATTGTCAATATTCGTTT+AGG 0.348480 1_1:-76862773 Msa0045160:CDS
CTGTCCCTCCGTAATATATC+TGG 0.348917 1_1:+76859769 None:intergenic
ATTACTTCATTACCATCATT+TGG 0.354095 1_1:+76859900 None:intergenic
CAGCATCTCGGCTGTAAAAC+TGG 0.358949 1_1:+76858484 None:intergenic
CAACGACAGCTTTCGTTGCC+TGG 0.359191 1_1:+76858792 None:intergenic
ATGACTGTGTCTGGAGTTAC+CGG 0.376731 1_1:-76862941 Msa0045160:CDS
AGATTACCAAATTAAGGAAA+AGG 0.411767 1_1:+76861020 None:intergenic
GGTCATTCTTGAGAAAGTTA+AGG 0.412036 1_1:-76862912 Msa0045160:intron
TGGCGAAAAGGCTGTTGTTC+AGG 0.415818 1_1:-76862711 Msa0045160:intron
TTTACGCCCCTCAATTCTTC+CGG 0.416790 1_1:+76859956 None:intergenic
CTTCATTAATACCCACTTCA+AGG 0.424318 1_1:+76858688 None:intergenic
TCTTCCTGGCACCTCTTCTC+TGG 0.425819 1_1:+76860031 None:intergenic
CACGATGCTCTTCCAAAACT+TGG 0.428314 1_1:+76864848 None:intergenic
ATGAAATCACTTGCAAAAGA+TGG 0.438991 1_1:+76864645 None:intergenic
TGAGAGGAAGTCTGTTGCCC+AGG 0.444969 1_1:-76858613 Msa0045160:CDS
GATTACCAAATTAAGGAAAA+GGG 0.449091 1_1:+76861021 None:intergenic
AAGCGTGACTTTGAGGAGAA+TGG 0.451660 1_1:-76861061 Msa0045160:CDS
GAAGTACACGAGGGAAAATC+CGG 0.454247 1_1:+76858535 None:intergenic
TAGAGACTGGAATATATTGC+GGG 0.454648 1_1:+76858578 None:intergenic
TGATCTTACCAGATATATTA+CGG 0.458091 1_1:-76859777 Msa0045160:CDS
GTGATGATACGTTCGATTGT+AGG 0.458361 1_1:+76860408 None:intergenic
CCAGGAAGACGTGGTTATCC+TGG 0.466984 1_1:-76860017 Msa0045160:CDS
GTCAATATTCGTTTAGGCGA+TGG 0.473500 1_1:-76862767 Msa0045160:CDS
TGAACATGCCGGAAGAATTG+AGG 0.476429 1_1:-76859964 Msa0045160:CDS
GCGGGTGTCGTAGGCTCCCT+GGG 0.477631 1_1:+76858596 None:intergenic
CTCGAGAACTTGTCCATGCC+GGG 0.477725 1_1:+76862739 None:intergenic
CACTTGCAAAAGATGGAGAC+AGG 0.478454 1_1:+76864652 None:intergenic
GGACAAGTTCTCGAGATTGA+TGG 0.478592 1_1:-76862731 Msa0045160:CDS
GCTCTTGCTTAATGTTCTTG+AGG 0.496316 1_1:+76864874 None:intergenic
ACAGAATACATGACTGTGTC+TGG 0.496594 1_1:-76862950 Msa0045160:intron
GTAATATATCTGGTAAGATC+AGG 0.498299 1_1:+76859779 None:intergenic
GCTGCCAGAGAAGAGGTGCC+AGG 0.506143 1_1:-76860035 Msa0045160:CDS
GAACATGCCGGAAGAATTGA+GGG 0.507410 1_1:-76859963 Msa0045160:CDS
CTTTGAGGAGAATGGCTCAA+TGG 0.507722 1_1:-76861053 Msa0045160:CDS
GAATATATTGCGGGTGTCGT+AGG 0.509788 1_1:+76858587 None:intergenic
CTCAAGAATGACCAATGGTC+CGG 0.512187 1_1:+76862922 None:intergenic
TCTCGAGAACTTGTCCATGC+CGG 0.512745 1_1:+76862738 None:intergenic
ATGTTCTTCCATCACTATCT+CGG 0.513623 1_1:-76859138 Msa0045160:CDS
ATGCAGGCGAGGTGCTGTCT+CGG 0.514779 1_1:+76864614 None:intergenic
TCCATGCAAGATCTAGAGAC+TGG 0.515422 1_1:+76858565 None:intergenic
AGAGCTTGGTGTAGTCCTCT+TGG 0.517761 1_1:-76863752 Msa0045160:CDS
TGCCATTGGAAAGGATGTCC+AGG 0.518353 1_1:-76858810 Msa0045160:CDS
ATCACTATCTCGGTTGATGA+AGG 0.519694 1_1:-76859128 Msa0045160:intron
ATCTTGCATGGACTTTACTC+CGG 0.519977 1_1:-76858554 Msa0045160:CDS
ATTCTAACCATGCCAAATGA+TGG 0.521293 1_1:-76859912 Msa0045160:intron
GTCTGGAGTTACCGGACCAT+TGG 0.521668 1_1:-76862933 Msa0045160:CDS
TCTCGAGATTGATGGCGAAA+AGG 0.527436 1_1:-76862723 Msa0045160:CDS
GTAAAACTGGTCAAGAGTCT+TGG 0.529021 1_1:+76858497 None:intergenic
TGGGGAGGGAATGACTAGAA+AGG 0.531100 1_1:-76858986 Msa0045160:CDS
CCTTCATTAGCTCTTCATGC+AGG 0.532164 1_1:+76864598 None:intergenic
TTCATTACCATCATTTGGCA+TGG 0.532782 1_1:+76859905 None:intergenic
TGCGGCTATGGGAGTTAACA+TGG 0.532881 1_1:-76861101 Msa0045160:CDS
GTGCAACATACATTTAACCT+TGG 0.533755 1_1:-76863692 Msa0045160:intron
TGTCACGTCTTCTGATTCTC+CGG 0.535001 1_1:-76866862 Msa0045160:intron
CTGTATGCAACTTATGCCAT+TGG 0.536747 1_1:-76858824 Msa0045160:CDS
AGCACTTTCATCTGAGGACC+TGG 0.537514 1_1:-76858762 Msa0045160:CDS
TAGGCAGTTGCATAATAGAC+AGG 0.544818 1_1:-76859735 Msa0045160:intron
TCCAGTCTCTAGATCTTGCA+TGG 0.545696 1_1:-76858566 Msa0045160:CDS
ATCATCAATTACCAGCATCT+CGG 0.552362 1_1:+76858472 None:intergenic
AGTGATGGAAGAACATTGAT+TGG 0.552550 1_1:+76859145 None:intergenic
AACTGGTCAAGAGTCTTGGC+TGG 0.554684 1_1:+76858501 None:intergenic
GGAAGAATTGAGGGGCGTAA+AGG 0.556865 1_1:-76859954 Msa0045160:CDS
TGCCTGGACATCCTTTCCAA+TGG 0.558387 1_1:+76858808 None:intergenic
GAGAGGAAGTCTGTTGCCCA+GGG 0.561200 1_1:-76858612 Msa0045160:CDS
AGAGAAAATTAGTAGATGCC+AGG 0.561602 1_1:+76858744 None:intergenic
ACCACTGCAGAGTGCTATTG+GGG 0.563672 1_1:-76859004 Msa0045160:intron
TAGTGAAATTGTCCTTGAAG+TGG 0.569681 1_1:-76858700 Msa0045160:CDS
CTGCAGAGTGCTATTGGGGA+GGG 0.572458 1_1:-76859000 Msa0045160:intron
GGCGATGGAACTACCCGGCA+TGG 0.573515 1_1:-76862752 Msa0045160:CDS
CTAGAGACTGGAATATATTG+CGG 0.576024 1_1:+76858577 None:intergenic
GCAACAATTTATGAACATGC+CGG 0.577220 1_1:-76859975 Msa0045160:CDS
TCATTCTGATGTGTCCAACC+AGG 0.578586 1_1:-76858962 Msa0045160:intron
CAGGCAACGAAAGCTGTCGT+TGG 0.583789 1_1:-76858791 Msa0045160:CDS
AAGAAAACGACGGGATTGAG+AGG 0.586955 1_1:+76866899 None:intergenic
TCGATTGAGAAGAAAACGAC+GGG 0.590073 1_1:+76866890 None:intergenic
ACATGGAAATTCCAGTTCGA+AGG 0.590375 1_1:-76864948 Msa0045160:intron
GAATATCTGGCTTATGAATG+TGG 0.590666 1_1:-76860360 Msa0045160:CDS
AACATAATAAGCTTCTGAAG+AGG 0.600221 1_1:+76864921 None:intergenic
AGTGAAATTGTCCTTGAAGT+GGG 0.600879 1_1:-76858699 Msa0045160:intron
ATGGAAGAACATTGATTGGT+GGG 0.602705 1_1:+76859149 None:intergenic
AGGTATTTGAAGGTACATCT+GGG 0.603787 1_1:-76862454 Msa0045160:intron
AGGGACAGATATACATCGAT+AGG 0.603945 1_1:-76859754 Msa0045160:CDS
CCTGCATGAAGAGCTAATGA+AGG 0.605404 1_1:-76864598 Msa0045160:intron
AATTTCTGGACAAGTTTGAG+AGG 0.606081 1_1:-76858629 Msa0045160:intron
ATTAGCTCTTCATGCAGGCG+AGG 0.608084 1_1:+76864603 None:intergenic
TATCTGGTAAGATCAGGAGT+TGG 0.610819 1_1:+76859785 None:intergenic
TTCATCAACCGAGATAGTGA+TGG 0.612897 1_1:+76859130 None:intergenic
AGAAGAAGCACTTTCATCTG+AGG 0.617772 1_1:-76858768 Msa0045160:CDS
TTATGCTGATGCTCTTCGTG+AGG 0.621125 1_1:-76860301 Msa0045160:intron
CCAAAATAAGCACGACCAAG+AGG 0.622212 1_1:+76863737 None:intergenic
GGTATCTGCTGCCAGAGAAG+AGG 0.624465 1_1:-76860042 Msa0045160:CDS
GAAGAGGTGCCAGGAAGACG+TGG 0.628045 1_1:-76860026 Msa0045160:CDS
GATGGAAGAACATTGATTGG+TGG 0.633609 1_1:+76859148 None:intergenic
ACTGCAGAGTGCTATTGGGG+AGG 0.635578 1_1:-76859001 Msa0045160:intron
ACTTTCTCAAGAATGACCAA+TGG 0.645136 1_1:+76862917 None:intergenic
TGCAACTTATGCCATTGGAA+AGG 0.655175 1_1:-76858819 Msa0045160:CDS
CTTACCAGATATATTACGGA+GGG 0.659583 1_1:-76859773 Msa0045160:CDS
AGATCTGTATACATATAACC+AGG 0.661413 1_1:+76859999 None:intergenic
CAAACAAGAAGAGACCTGGT+TGG 0.666933 1_1:+76858948 None:intergenic
GTTTAGGCGATGGAACTACC+CGG 0.678023 1_1:-76862757 Msa0045160:CDS
CTCGATTGAGAAGAAAACGA+CGG 0.679795 1_1:+76866889 None:intergenic
GAGGTTGATGAAGAAGACGA+CGG 0.681666 1_1:+76866918 None:intergenic
ACTTGCAAAAGATGGAGACA+GGG 0.688727 1_1:+76864653 None:intergenic
TCTTACCAGATATATTACGG+AGG 0.728933 1_1:-76859774 Msa0045160:CDS
ATACGATGAAGAAGTACACG+AGG 0.729276 1_1:+76858525 None:intergenic
GCAGTAGTAAGAGCAATACG+AGG 0.737884 1_1:+76860384 None:intergenic
TACGATGAAGAAGTACACGA+GGG 0.742809 1_1:+76858526 None:intergenic
AACATGCCGGAAGAATTGAG+GGG 0.764342 1_1:-76859962 Msa0045160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATGAAAATATGTAT+TGG + chr1_1:76858515-76858534 None:intergenic 10.0%
!!! ATATTTTAATTGAGAAAATT+GGG - chr1_1:76859595-76859614 Msa0045160:intron 10.0%
!!! TTTATATGATATGTTTTAAT+AGG - chr1_1:76861714-76861733 Msa0045160:intron 10.0%
!! AAAAAAAATGTATCTTAAAT+CGG - chr1_1:76862897-76862916 Msa0045160:intron 10.0%
!!! TTATAATTTTTTTAATAAGG+GGG + chr1_1:76865576-76865595 None:intergenic 10.0%
!!! TTTTTTTACTTAAGCTTTAA+AGG - chr1_1:76858611-76858630 Msa0045160:CDS 15.0%
!!! TATCTCAATATATTTTGATT+TGG - chr1_1:76859293-76859312 Msa0045160:intron 15.0%
!!! CATATTTTAATTGAGAAAAT+TGG - chr1_1:76859594-76859613 Msa0045160:intron 15.0%
!!! AAATATTTTGAATTCGATTT+GGG + chr1_1:76859754-76859773 None:intergenic 15.0%
!!! AAAATATTTTGAATTCGATT+TGG + chr1_1:76859755-76859774 None:intergenic 15.0%
!!! TTTTAATTTTCTGTTTACTT+TGG - chr1_1:76860100-76860119 Msa0045160:intron 15.0%
!! CAAAAAAAGAATACATTATT+TGG + chr1_1:76861305-76861324 None:intergenic 15.0%
!!! TATTTTACTTATTGAAAAAC+TGG - chr1_1:76861613-76861632 Msa0045160:intron 15.0%
!!! ATTTTACTTATTGAAAAACT+GGG - chr1_1:76861614-76861633 Msa0045160:intron 15.0%
!!! AAACTACATAAATTTAAAGT+AGG - chr1_1:76861649-76861668 Msa0045160:intron 15.0%
!! TGATAATCTTAATTTAAATG+TGG + chr1_1:76861808-76861827 None:intergenic 15.0%
!! TGTAAATCTATTGATATATT+GGG - chr1_1:76862588-76862607 Msa0045160:intron 15.0%
!!! TAAACAGCATATATTTTTAT+GGG + chr1_1:76863787-76863806 None:intergenic 15.0%
!!! ATAAACAGCATATATTTTTA+TGG + chr1_1:76863788-76863807 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr1_1:76864529-76864548 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1_1:76864530-76864549 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr1_1:76864594-76864613 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr1_1:76864595-76864614 None:intergenic 15.0%
!!! TTTTAAAGATTACCAAATTA+AGG + chr1_1:76865080-76865099 None:intergenic 15.0%
!!! AATTTTCTAAAAACGTTAAA+TGG - chr1_1:76865447-76865466 Msa0045160:intron 15.0%
!!! TACTTCAATATTTTGTTTAA+TGG - chr1_1:76865496-76865515 Msa0045160:intron 15.0%
!! GGTTAAGAAATAAAAATTAT+CGG + chr1_1:76865610-76865629 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr1_1:76866603-76866622 Msa0045160:intron 15.0%
!! TTATATGTAAACTATCTTAT+TGG - chr1_1:76867188-76867207 Msa0045160:intron 15.0%
!!! ATTTTCCTCAATATTATTAA+CGG - chr1_1:76867429-76867448 Msa0045160:intron 15.0%
!! AGTATCTCAAAAACAAAAAT+AGG + chr1_1:76858706-76858725 None:intergenic 20.0%
!! TCAACTAAAATACAAACTAT+CGG + chr1_1:76858773-76858792 None:intergenic 20.0%
!! AAATTGTTAAAGTGTAAAGT+GGG + chr1_1:76858975-76858994 None:intergenic 20.0%
!!! AATATTTTGAATTCGATTTG+GGG + chr1_1:76859753-76859772 None:intergenic 20.0%
!! AATATACACCATATATGAAT+CGG + chr1_1:76860004-76860023 None:intergenic 20.0%
!! TTCATATATGGTGTATATTT+AGG - chr1_1:76860005-76860024 Msa0045160:CDS 20.0%
!!! ACTTATTGTTAAGGAAATTT+TGG - chr1_1:76860171-76860190 Msa0045160:intron 20.0%
!! TTAGATGTAATCATCATTAA+AGG - chr1_1:76860358-76860377 Msa0045160:CDS 20.0%
!! TAGATGTAATCATCATTAAA+GGG - chr1_1:76860359-76860378 Msa0045160:CDS 20.0%
!! TTGATTCATTTAGTATTCTT+TGG - chr1_1:76861037-76861056 Msa0045160:CDS 20.0%
!!! ATCAATTTATTTCAAGTAGT+TGG - chr1_1:76862559-76862578 Msa0045160:intron 20.0%
!! GTGTAAATCTATTGATATAT+TGG - chr1_1:76862587-76862606 Msa0045160:intron 20.0%
!! AAGTTTGAACACATTTAAAA+AGG + chr1_1:76862983-76863002 None:intergenic 20.0%
!! AATAAAGAGACACATAATTT+AGG + chr1_1:76863115-76863134 None:intergenic 20.0%
!! AGTTAAAATTTAGTCACAAA+GGG + chr1_1:76863266-76863285 None:intergenic 20.0%
!! AAGTTAAAATTTAGTCACAA+AGG + chr1_1:76863267-76863286 None:intergenic 20.0%
!!! TTGTGACTAAATTTTAACTT+CGG - chr1_1:76863267-76863286 Msa0045160:intron 20.0%
!! AAACTATAAAATGACGTTAA+AGG + chr1_1:76863592-76863611 None:intergenic 20.0%
!! CTTTATAATAACTATTGATC+AGG - chr1_1:76863617-76863636 Msa0045160:intron 20.0%
!! TAACAGTTAATGCATTATTT+AGG + chr1_1:76863843-76863862 None:intergenic 20.0%
!! TATCTTCTTTATCATTATCT+GGG + chr1_1:76863957-76863976 None:intergenic 20.0%
!! TTATCTTCTTTATCATTATC+TGG + chr1_1:76863958-76863977 None:intergenic 20.0%
!! GAAAAGAAATATTATCAGAT+AGG - chr1_1:76864308-76864327 Msa0045160:intron 20.0%
!! AAATATTATCAGATAGGAAA+GGG - chr1_1:76864314-76864333 Msa0045160:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr1_1:76864496-76864515 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr1_1:76864497-76864516 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr1_1:76864570-76864589 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr1_1:76864593-76864612 None:intergenic 20.0%
!! TACTCATATTACATAAAGTA+TGG + chr1_1:76864902-76864921 None:intergenic 20.0%
!! TACTTTATGTAATATGAGTA+AGG - chr1_1:76864902-76864921 Msa0045160:CDS 20.0%
!!! TTTGATTCTTCATTTTTCTT+TGG - chr1_1:76865255-76865274 Msa0045160:intron 20.0%
!!! TTGATTCTTCATTTTTCTTT+GGG - chr1_1:76865256-76865275 Msa0045160:intron 20.0%
!! TAAGAAATAAAAATTATCGG+AGG + chr1_1:76865607-76865626 None:intergenic 20.0%
!!! TTTTCCTAATAAATTACAGT+TGG + chr1_1:76865823-76865842 None:intergenic 20.0%
!!! AGTAAATTTTGCTTACATTT+TGG + chr1_1:76866501-76866520 None:intergenic 20.0%
!!! GTAAGCAAAATTTACTTTTT+AGG - chr1_1:76866505-76866524 Msa0045160:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + chr1_1:76866594-76866613 None:intergenic 20.0%
!! ATATAAAAGCAGTTAATTGT+TGG - chr1_1:76866655-76866674 Msa0045160:intron 20.0%
!! ACATATGTTTCTTAATCAAA+AGG - chr1_1:76867029-76867048 Msa0045160:intron 20.0%
!! TAAAAAAAGAAAACTACACA+GGG + chr1_1:76867171-76867190 None:intergenic 20.0%
!! ATAAAAAAAGAAAACTACAC+AGG + chr1_1:76867172-76867191 None:intergenic 20.0%
! AACTAAAATACAAACTATCG+GGG + chr1_1:76858771-76858790 None:intergenic 25.0%
! CAACTAAAATACAAACTATC+GGG + chr1_1:76858772-76858791 None:intergenic 25.0%
! AAGATGACTAAAAGTGAATT+GGG + chr1_1:76858807-76858826 None:intergenic 25.0%
! AAAGATGACTAAAAGTGAAT+TGG + chr1_1:76858808-76858827 None:intergenic 25.0%
!!! AGATCTTTTTGGCAAAATTA+GGG + chr1_1:76858905-76858924 None:intergenic 25.0%
!!! AAGATCTTTTTGGCAAAATT+AGG + chr1_1:76858906-76858925 None:intergenic 25.0%
! CAAATTGTTAAAGTGTAAAG+TGG + chr1_1:76858976-76858995 None:intergenic 25.0%
! CACTTTACACTTTAACAATT+TGG - chr1_1:76858974-76858993 Msa0045160:CDS 25.0%
!!! GTTAATAAGATGGTTTTAGT+TGG + chr1_1:76859058-76859077 None:intergenic 25.0%
! TTAATTGAGAAAATTGGGTT+TGG - chr1_1:76859600-76859619 Msa0045160:intron 25.0%
!!! TTTTAATTTTTGTGCTGAAG+TGG - chr1_1:76859645-76859664 Msa0045160:intron 25.0%
! AATAAACAAAAGGAAGAAAG+AGG + chr1_1:76860080-76860099 None:intergenic 25.0%
! GGATGATATACTTATTGTTA+AGG - chr1_1:76860162-76860181 Msa0045160:intron 25.0%
! AATTAGATATCAGTTGCTAA+AGG - chr1_1:76860259-76860278 Msa0045160:intron 25.0%
! ATTCCTAGATATGAGAAAAT+GGG + chr1_1:76860298-76860317 None:intergenic 25.0%
! TATTCCTAGATATGAGAAAA+TGG + chr1_1:76860299-76860318 None:intergenic 25.0%
! TTCCACAGATTTCAAATAAT+AGG + chr1_1:76860333-76860352 None:intergenic 25.0%
! TTCATGTTTGTTCTTTAGTT+TGG - chr1_1:76860525-76860544 Msa0045160:intron 25.0%
!! AGATTGATACAAGAGTATAA+TGG + chr1_1:76860682-76860701 None:intergenic 25.0%
! TTGAGATTCATATAACCTAA+GGG + chr1_1:76860769-76860788 None:intergenic 25.0%
! ATTGAGATTCATATAACCTA+AGG + chr1_1:76860770-76860789 None:intergenic 25.0%
! TGATAGTTTACATACTGAAT+GGG - chr1_1:76860793-76860812 Msa0045160:intron 25.0%
!! TATGCATAATATTTTGTCAC+AGG - chr1_1:76860817-76860836 Msa0045160:intron 25.0%
!! ATGCATAATATTTTGTCACA+GGG - chr1_1:76860818-76860837 Msa0045160:intron 25.0%
!!! AATTCCTGCTAAATTTTGAT+GGG - chr1_1:76860867-76860886 Msa0045160:intron 25.0%
! TACACATAGAATATACAGAA+GGG + chr1_1:76860999-76861018 None:intergenic 25.0%
! TTACACATAGAATATACAGA+AGG + chr1_1:76861000-76861019 None:intergenic 25.0%
! TATTATGTTCAACAAAGTCA+TGG - chr1_1:76861096-76861115 Msa0045160:CDS 25.0%
!!! CACAAAATTTGTTGAATACA+TGG - chr1_1:76861126-76861145 Msa0045160:CDS 25.0%
! TCTAAACGAAAATATCATAG+GGG + chr1_1:76861374-76861393 None:intergenic 25.0%
! GTCTAAACGAAAATATCATA+GGG + chr1_1:76861375-76861394 None:intergenic 25.0%
! TGTCTAAACGAAAATATCAT+AGG + chr1_1:76861376-76861395 None:intergenic 25.0%
! ATCGAATCTAATCTATCAAA+AGG + chr1_1:76861544-76861563 None:intergenic 25.0%
! CATGAAATATATAAAGAGAC+TGG + chr1_1:76861936-76861955 None:intergenic 25.0%
! AAAGAAATTGTTGTAGATGA+AGG + chr1_1:76862047-76862066 None:intergenic 25.0%
!! TATGATTTTTCTCTGAACTT+TGG - chr1_1:76862169-76862188 Msa0045160:intron 25.0%
!! TCATTGACTAGTAAATTGAA+AGG + chr1_1:76862224-76862243 None:intergenic 25.0%
! TCTTTATTACTGTTTGTTCT+TGG - chr1_1:76862258-76862277 Msa0045160:intron 25.0%
! AACAAGTTGTTTAATAGCAT+TGG - chr1_1:76862533-76862552 Msa0045160:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1_1:76862814-76862833 None:intergenic 25.0%
!!! TAGGCAACTTTTTACTTTTT+AGG + chr1_1:76862839-76862858 None:intergenic 25.0%
!!! AGATACATTTTTTTTTTCCC+TGG + chr1_1:76862892-76862911 None:intergenic 25.0%
!! AAAATCACACATTTTAGATC+AGG + chr1_1:76862927-76862946 None:intergenic 25.0%
! AATACCATAAGTTATCAACA+CGG + chr1_1:76863068-76863087 None:intergenic 25.0%
! TTGACAATCTCTTGATATTT+GGG + chr1_1:76863309-76863328 None:intergenic 25.0%
! ATTGACAATCTCTTGATATT+TGG + chr1_1:76863310-76863329 None:intergenic 25.0%
! AATCTTATTATGCATGCTTA+AGG + chr1_1:76863412-76863431 None:intergenic 25.0%
!! TGGATTTTTCTTATTGATGA+TGG - chr1_1:76864281-76864300 Msa0045160:intron 25.0%
! GAAATATTATCAGATAGGAA+AGG - chr1_1:76864313-76864332 Msa0045160:intron 25.0%
! AATATTATCAGATAGGAAAG+GGG - chr1_1:76864315-76864334 Msa0045160:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr1_1:76864461-76864480 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr1_1:76864571-76864590 None:intergenic 25.0%
! ATAATGATTAATACGTCAGT+AGG + chr1_1:76864722-76864741 None:intergenic 25.0%
! TTTATGTAATATGAGTAAGG+TGG - chr1_1:76864905-76864924 Msa0045160:CDS 25.0%
! TTACAAATCTTGATTTATGC+AGG - chr1_1:76864934-76864953 Msa0045160:CDS 25.0%
! TACAAATCTTGATTTATGCA+GGG - chr1_1:76864935-76864954 Msa0045160:CDS 25.0%
! GATTACCAAATTAAGGAAAA+GGG + chr1_1:76865073-76865092 None:intergenic 25.0%
! AGATTACCAAATTAAGGAAA+AGG + chr1_1:76865074-76865093 None:intergenic 25.0%
! AAACCAAATTACCAGAATAA+GGG + chr1_1:76865129-76865148 None:intergenic 25.0%
! AATAAATGTCTCATAATGCT+TGG - chr1_1:76865208-76865227 Msa0045160:intron 25.0%
!!! TGATTCTTCATTTTTCTTTG+GGG - chr1_1:76865257-76865276 Msa0045160:intron 25.0%
! ATCAATAGATATATGTGTAG+AGG - chr1_1:76865340-76865359 Msa0045160:intron 25.0%
!!! ATACTAGTTCTACATTAAGA+TGG + chr1_1:76865374-76865393 None:intergenic 25.0%
! CTTAATGTAGAACTAGTATT+TGG - chr1_1:76865375-76865394 Msa0045160:intron 25.0%
! TGTACCAACTGTAATTTATT+AGG - chr1_1:76865816-76865835 Msa0045160:intron 25.0%
! TAAAGAAAAATACAGGAGAA+TGG + chr1_1:76865895-76865914 None:intergenic 25.0%
!! AATCCTCTAAAGAAAAATAC+AGG + chr1_1:76865902-76865921 None:intergenic 25.0%
! ATTACTTCATTACCATCATT+TGG + chr1_1:76866194-76866213 None:intergenic 25.0%
!! ATGAATTTTGTCTTCTGTTT+TGG - chr1_1:76866212-76866231 Msa0045160:intron 25.0%
! TGATCTTACCAGATATATTA+CGG - chr1_1:76866314-76866333 Msa0045160:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr1_1:76866530-76866549 Msa0045160:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + chr1_1:76866530-76866549 None:intergenic 25.0%
!! TTGTGTTATATAATGGGATT+CGG - chr1_1:76866679-76866698 Msa0045160:intron 25.0%
!! TTCAATTCTCTTTCTTTTCT+TGG - chr1_1:76866738-76866757 Msa0045160:intron 25.0%
!! CAATTTTCATTGATACATCA+AGG - chr1_1:76866792-76866811 Msa0045160:intron 25.0%
! TACAACCGTTAATAATATTG+AGG + chr1_1:76867437-76867456 None:intergenic 25.0%
! ATATTATTAACGGTTGTATC+TGG - chr1_1:76867439-76867458 Msa0045160:intron 25.0%
!! TCAAGGTGCAATTTTGAAAA+TGG - chr1_1:76858841-76858860 Msa0045160:intron 30.0%
AAATATTACTCTGTTCTGTC+TGG + chr1_1:76858874-76858893 None:intergenic 30.0%
!! GATCTTTTTGGCAAAATTAG+GGG + chr1_1:76858904-76858923 None:intergenic 30.0%
! ATCTTTTCTTCACCTATCTT+GGG + chr1_1:76858950-76858969 None:intergenic 30.0%
! AATCTTTTCTTCACCTATCT+TGG + chr1_1:76858951-76858970 None:intergenic 30.0%
CTCAAAAAGAAAACGAATAG+TGG + chr1_1:76859013-76859032 None:intergenic 30.0%
! TCTCTCGATGCATTTTTATT+TGG - chr1_1:76859334-76859353 Msa0045160:intron 30.0%
AAAAGCAAAGTTGAAGAACA+AGG + chr1_1:76859399-76859418 None:intergenic 30.0%
CTTAGAGAATTAGAGATTGT+TGG - chr1_1:76859422-76859441 Msa0045160:intron 30.0%
CAGTATTTGAGTAACATAAC+CGG + chr1_1:76859909-76859928 None:intergenic 30.0%
!!! ACATTTTTTCTGTCTCATTC+TGG - chr1_1:76860042-76860061 Msa0045160:CDS 30.0%
TGTATGACGTAAATTGATGT+TGG - chr1_1:76860126-76860145 Msa0045160:intron 30.0%
!! GATGTTGGTAATTTACACAA+CGG - chr1_1:76860141-76860160 Msa0045160:intron 30.0%
ATGAGAAAATGGGAGAAAAA+AGG + chr1_1:76860288-76860307 None:intergenic 30.0%
! GTCCTATTATTTGAAATCTG+TGG - chr1_1:76860328-76860347 Msa0045160:CDS 30.0%
!!! ATAGACTTTTAGCTCATCTT+GGG - chr1_1:76860470-76860489 Msa0045160:intron 30.0%
!! ATGTTTGTTCTTTAGTTTGG+TGG - chr1_1:76860528-76860547 Msa0045160:intron 30.0%
! TAAACTAGGCTTTGTAAACA+TGG + chr1_1:76860598-76860617 None:intergenic 30.0%
CTGATAGTTTACATACTGAA+TGG - chr1_1:76860792-76860811 Msa0045160:intron 30.0%
GATAGTTTACATACTGAATG+GGG - chr1_1:76860794-76860813 Msa0045160:intron 30.0%
! TTTGTCACAGGGATTTTAAA+TGG - chr1_1:76860829-76860848 Msa0045160:intron 30.0%
! TTGTCACAGGGATTTTAAAT+GGG - chr1_1:76860830-76860849 Msa0045160:intron 30.0%
CAAAATTTAGCAGGAATTGA+GGG + chr1_1:76860865-76860884 None:intergenic 30.0%
TCAAAATTTAGCAGGAATTG+AGG + chr1_1:76860866-76860885 None:intergenic 30.0%
! CAATTCCTGCTAAATTTTGA+TGG - chr1_1:76860866-76860885 Msa0045160:intron 30.0%
!! ATTCCTGCTAAATTTTGATG+GGG - chr1_1:76860868-76860887 Msa0045160:intron 30.0%
! AACATAATAAGCTTCTGAAG+AGG + chr1_1:76861173-76861192 None:intergenic 30.0%
ATGAAATCACTTGCAAAAGA+TGG + chr1_1:76861449-76861468 None:intergenic 30.0%
! CTTTTGCAAGTGATTTCATA+CGG - chr1_1:76861450-76861469 Msa0045160:intron 30.0%
ATACTTAACAGTAAGACGAA+CGG + chr1_1:76861588-76861607 None:intergenic 30.0%
!! GTGGTTATCATCTTTAGTTT+TGG + chr1_1:76861789-76861808 None:intergenic 30.0%
GTCATCATTATCTTATGTGA+TGG - chr1_1:76861838-76861857 Msa0045160:intron 30.0%
TAAATGCAAGCGATAAGAAA+AGG + chr1_1:76862021-76862040 None:intergenic 30.0%
! ATTTCTTTTCCTATGCAACT+AGG - chr1_1:76862059-76862078 Msa0045160:intron 30.0%
TGTAAATCAATTGTTGTACC+AGG - chr1_1:76862082-76862101 Msa0045160:intron 30.0%
GTAAATCAATTGTTGTACCA+GGG - chr1_1:76862083-76862102 Msa0045160:intron 30.0%
! GCACATTTTCTATAACTTCT+TGG + chr1_1:76862383-76862402 None:intergenic 30.0%
!! AATTCTAGAGTGATATACCA+AGG + chr1_1:76862419-76862438 None:intergenic 30.0%
! TTATTTCAAGTAGTTGGACT+AGG - chr1_1:76862565-76862584 Msa0045160:intron 30.0%
GATGTATGTGGTCTATAATA+TGG + chr1_1:76862802-76862821 None:intergenic 30.0%
GATAACTTATGGTATTCGTT+TGG - chr1_1:76863072-76863091 Msa0045160:intron 30.0%
GAGATTGTCAATATTCGTTT+AGG - chr1_1:76863318-76863337 Msa0045160:intron 30.0%
ACTATTGATCAGGTATTTGA+AGG - chr1_1:76863627-76863646 Msa0045160:intron 30.0%
TGTCTTGTCTCAATGAAATT+TGG - chr1_1:76863808-76863827 Msa0045160:intron 30.0%
CTCAATGAAATTTGGATTAC+AGG - chr1_1:76863816-76863835 Msa0045160:intron 30.0%
TTATAAGTATAGCCAACCAT+CGG + chr1_1:76863914-76863933 None:intergenic 30.0%
TTCTTTATCATTATCTGGGA+CGG + chr1_1:76863953-76863972 None:intergenic 30.0%
TTGCATGTCATCTTGATTAA+TGG - chr1_1:76864038-76864057 Msa0045160:intron 30.0%
! CTCTTGAATTGTATGACTTT+TGG - chr1_1:76864232-76864251 Msa0045160:intron 30.0%
ATTGTGATCTGTGTTTCATT+TGG - chr1_1:76864261-76864280 Msa0045160:intron 30.0%
!! TTTGACTACTTTTGTAAAGG+CGG + chr1_1:76864391-76864410 None:intergenic 30.0%
!! TGGTTTGACTACTTTTGTAA+AGG + chr1_1:76864394-76864413 None:intergenic 30.0%
AGAAAATGGATCAGTTATTC+CGG + chr1_1:76864447-76864466 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr1_1:76864482-76864501 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr1_1:76864483-76864502 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1_1:76864586-76864605 None:intergenic 30.0%
AATACGTCAGTAGGAATAAA+GGG + chr1_1:76864713-76864732 None:intergenic 30.0%
TAATACGTCAGTAGGAATAA+AGG + chr1_1:76864714-76864733 None:intergenic 30.0%
TATAAGCAATATCACAAGTG+AGG + chr1_1:76864802-76864821 None:intergenic 30.0%
TCTTATTGCCTTAGATTAAG+CGG - chr1_1:76864837-76864856 Msa0045160:intron 30.0%
AAAATAGACCGCTTAATCTA+AGG + chr1_1:76864848-76864867 None:intergenic 30.0%
ACAAATCTTGATTTATGCAG+GGG - chr1_1:76864936-76864955 Msa0045160:CDS 30.0%
!!! CAATTTTGCCATTGTTTTTG+CGG - chr1_1:76864972-76864991 Msa0045160:intron 30.0%
AACCAAATTACCAGAATAAG+GGG + chr1_1:76865128-76865147 None:intergenic 30.0%
GAAACCAAATTACCAGAATA+AGG + chr1_1:76865130-76865149 None:intergenic 30.0%
!! TTTTTCCTTTCCAGTATTGA+TGG - chr1_1:76865161-76865180 Msa0045160:intron 30.0%
!! TTCATTTTTCTTTGGGGATT+GGG - chr1_1:76865263-76865282 Msa0045160:intron 30.0%
!!! GGATCAACATATTGTTTTTG+AGG - chr1_1:76865517-76865536 Msa0045160:intron 30.0%
! ATGTCTGTACAATTGCTATT+GGG - chr1_1:76865640-76865659 Msa0045160:intron 30.0%
AGAATGGTAAACACAGTAAA+AGG + chr1_1:76865879-76865898 None:intergenic 30.0%
! TCTCCTGTATTTTTCTTTAG+AGG - chr1_1:76865896-76865915 Msa0045160:intron 30.0%
AGATCTGTATACATATAACC+AGG + chr1_1:76866095-76866114 None:intergenic 30.0%
CATGGTTAGAATTGGAATTT+GGG + chr1_1:76866171-76866190 None:intergenic 30.0%
!! TGTCTTCTGTTTTGGATAAA+AGG - chr1_1:76866220-76866239 Msa0045160:intron 30.0%
GTAATATATCTGGTAAGATC+AGG + chr1_1:76866315-76866334 None:intergenic 30.0%
TGCATTATTACGAGAGAATT+TGG - chr1_1:76866438-76866457 Msa0045160:intron 30.0%
GATGTATGTGGTTCATAATA+TGG + chr1_1:76866557-76866576 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr1_1:76866606-76866625 Msa0045160:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr1_1:76866607-76866626 Msa0045160:intron 30.0%
!! TGTTGGCTTGTGTTATATAA+TGG - chr1_1:76866672-76866691 Msa0045160:intron 30.0%
!! GTTGGCTTGTGTTATATAAT+GGG - chr1_1:76866673-76866692 Msa0045160:intron 30.0%
!! GGTATTCTCTCTGAAAATTT+TGG - chr1_1:76866700-76866719 Msa0045160:intron 30.0%
CAGGGATCATATATATTTCA+TGG + chr1_1:76866825-76866844 None:intergenic 30.0%
CAATCTCATACAATTCATCA+GGG + chr1_1:76866843-76866862 None:intergenic 30.0%
TAATGCTTAGAATGTTTACC+AGG + chr1_1:76866887-76866906 None:intergenic 30.0%
! TTTCTTAATCAAAAGGTGTG+TGG - chr1_1:76867036-76867055 Msa0045160:intron 30.0%
ACACTCTAATGATGTATCAT+TGG - chr1_1:76867062-76867081 Msa0045160:intron 30.0%
TCAAAATTGCACCTTGAATG+CGG + chr1_1:76858838-76858857 None:intergenic 35.0%
! CGCTTGTTTCAAGATCTTTT+TGG + chr1_1:76858916-76858935 None:intergenic 35.0%
AAACGAATAGTGGTTCATTC+TGG + chr1_1:76859003-76859022 None:intergenic 35.0%
!!! GGTTTTGAGGGTTAATAAGA+TGG + chr1_1:76859068-76859087 None:intergenic 35.0%
GAACTGTAGAAAAACAGTAC+CGG + chr1_1:76859251-76859270 None:intergenic 35.0%
TCGAGAGAAGAAACGAAAAA+GGG + chr1_1:76859322-76859341 None:intergenic 35.0%
ATCGAGAGAAGAAACGAAAA+AGG + chr1_1:76859323-76859342 None:intergenic 35.0%
AGAGAATTAGAGATTGTTGG+TGG - chr1_1:76859425-76859444 Msa0045160:intron 35.0%
AACATTTAGCAAACAAGCAC+CGG + chr1_1:76859538-76859557 None:intergenic 35.0%
AAGCTATCATGTAGAACTTG+TGG - chr1_1:76859787-76859806 Msa0045160:CDS 35.0%
!! AGAAGCATTTGAATTTCGCA+GGG + chr1_1:76859881-76859900 None:intergenic 35.0%
!! AAGAAGCATTTGAATTTCGC+AGG + chr1_1:76859882-76859901 None:intergenic 35.0%
ATTCAAATGCTTCTTCTCTC+CGG - chr1_1:76859887-76859906 Msa0045160:intron 35.0%
ATTGTATGCTAGACACTTAG+GGG + chr1_1:76859957-76859976 None:intergenic 35.0%
GATTGTATGCTAGACACTTA+GGG + chr1_1:76859958-76859977 None:intergenic 35.0%
AGATTGTATGCTAGACACTT+AGG + chr1_1:76859959-76859978 None:intergenic 35.0%
CGGTGAAGTCTAAGAAATAA+AGG + chr1_1:76859984-76860003 None:intergenic 35.0%
!! AGACTTCACCGATTCATATA+TGG - chr1_1:76859993-76860012 Msa0045160:CDS 35.0%
!! GTTAAGGAAATTTTGGTCTC+TGG - chr1_1:76860178-76860197 Msa0045160:intron 35.0%
TAGATATCAGTTGCTAAAGG+TGG - chr1_1:76860262-76860281 Msa0045160:intron 35.0%
! TCTCCCATTTTCTCATATCT+AGG - chr1_1:76860292-76860311 Msa0045160:intron 35.0%
!!! TGGGGCATATTCGTTTTTTT+GGG + chr1_1:76860389-76860408 None:intergenic 35.0%
!!! ATGGGGCATATTCGTTTTTT+TGG + chr1_1:76860390-76860409 None:intergenic 35.0%
! TGATGATAATTTGTGGCGAA+AGG + chr1_1:76860419-76860438 None:intergenic 35.0%
!! GCTGGTTTGATGATAATTTG+TGG + chr1_1:76860426-76860445 None:intergenic 35.0%
TCTATCCATGGTAAATGAGT+GGG + chr1_1:76860455-76860474 None:intergenic 35.0%
ATGAGCTAAAAGTCTATCCA+TGG + chr1_1:76860467-76860486 None:intergenic 35.0%
!!! GATAGACTTTTAGCTCATCT+TGG - chr1_1:76860469-76860488 Msa0045160:intron 35.0%
!! AGGCTTTGTAAACATGGTTT+TGG + chr1_1:76860592-76860611 None:intergenic 35.0%
ACAAAGCCTAGTTTACAACT+TGG - chr1_1:76860603-76860622 Msa0045160:intron 35.0%
CAAAGCCTAGTTTACAACTT+GGG - chr1_1:76860604-76860623 Msa0045160:intron 35.0%
TAGATCCCAAGTTGTAAACT+AGG + chr1_1:76860612-76860631 None:intergenic 35.0%
GGGAAAGTGAAAGAGAAATA+GGG + chr1_1:76860749-76860768 None:intergenic 35.0%
AGGGAAAGTGAAAGAGAAAT+AGG + chr1_1:76860750-76860769 None:intergenic 35.0%
TTTCTCTTTCACTTTCCCTT+AGG - chr1_1:76860751-76860770 Msa0045160:intron 35.0%
TCAACAGTTGCTAAAGTAAG+AGG - chr1_1:76861975-76861994 Msa0045160:intron 35.0%
CAACAGTTGCTAAAGTAAGA+GGG - chr1_1:76861976-76861995 Msa0045160:intron 35.0%
TGATTTACACCTAGTTGCAT+AGG + chr1_1:76862071-76862090 None:intergenic 35.0%
! TTTTGTTGATACAGAGAGCT+TGG - chr1_1:76862325-76862344 Msa0045160:intron 35.0%
GTGCAACATACATTTAACCT+TGG - chr1_1:76862399-76862418 Msa0045160:intron 35.0%
AAGTCTAAATGTATGCAGCT+GGG + chr1_1:76862457-76862476 None:intergenic 35.0%
TAATTTCATAGCACGTAGCT+GGG + chr1_1:76862514-76862533 None:intergenic 35.0%
TTAATTTCATAGCACGTAGC+TGG + chr1_1:76862515-76862534 None:intergenic 35.0%
! ATGTTGCTTACATTTGAGAC+CGG + chr1_1:76862740-76862759 None:intergenic 35.0%
!! CAATCCGTGTTGATAACTTA+TGG - chr1_1:76863061-76863080 Msa0045160:intron 35.0%
GGTCATTCTTGAGAAAGTTA+AGG - chr1_1:76863179-76863198 Msa0045160:intron 35.0%
! AGGTATTTGAAGGTACATCT+GGG - chr1_1:76863637-76863656 Msa0045160:intron 35.0%
AAAACACATAATTGAGCCGA+TGG - chr1_1:76863895-76863914 Msa0045160:intron 35.0%
GATTATCAGACTTCTCTAGT+CGG + chr1_1:76864130-76864149 None:intergenic 35.0%
GAAGTCTGATAATCTTCTTG+AGG - chr1_1:76864136-76864155 Msa0045160:intron 35.0%
GGGGAATAAAAAATGCGATA+AGG - chr1_1:76864334-76864353 Msa0045160:intron 35.0%
!!! GTAGCATTGTGCTTGTTTTT+TGG + chr1_1:76864414-76864433 None:intergenic 35.0%
GAAAATGGATCAGTTATTCC+GGG + chr1_1:76864446-76864465 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr1_1:76864616-76864635 Msa0045160:CDS 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr1_1:76864629-76864648 Msa0045160:CDS 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr1_1:76864630-76864649 Msa0045160:CDS 35.0%
ATTCATGTCAGTTTCTTCAC+AGG + chr1_1:76864767-76864786 None:intergenic 35.0%
CAAATCTTGATTTATGCAGG+GGG - chr1_1:76864937-76864956 Msa0045160:intron 35.0%
!!! GTTTTTTAAGCGTGACTTTG+AGG - chr1_1:76865023-76865042 Msa0045160:intron 35.0%
! AGTGACCCTTTTCCTTAATT+TGG - chr1_1:76865065-76865084 Msa0045160:intron 35.0%
TCTTTAATTCCCCCTTATTC+TGG - chr1_1:76865115-76865134 Msa0045160:intron 35.0%
ACCAAATTACCAGAATAAGG+GGG + chr1_1:76865127-76865146 None:intergenic 35.0%
TTCAACCATCAATACTGGAA+AGG + chr1_1:76865169-76865188 None:intergenic 35.0%
!! TTCCAGTATTGATGGTTGAA+TGG - chr1_1:76865169-76865188 Msa0045160:intron 35.0%
!! CTTCATTTTTCTTTGGGGAT+TGG - chr1_1:76865262-76865281 Msa0045160:intron 35.0%
!! TCATTTTTCTTTGGGGATTG+GGG - chr1_1:76865264-76865283 Msa0045160:intron 35.0%
!! ACTTCACATGTGTTTGGTTT+TGG + chr1_1:76865409-76865428 None:intergenic 35.0%
TGTACAGACATGTAAGAAAC+AGG + chr1_1:76865631-76865650 None:intergenic 35.0%
CATGTCTGTACAATTGCTAT+TGG - chr1_1:76865639-76865658 Msa0045160:intron 35.0%
! TTGCTATTGGGATTTACTGT+AGG - chr1_1:76865652-76865671 Msa0045160:intron 35.0%
TCTTACTACTGCTGAATATC+TGG - chr1_1:76865718-76865737 Msa0045160:intron 35.0%
! GAATATCTGGCTTATGAATG+TGG - chr1_1:76865731-76865750 Msa0045160:intron 35.0%
GCAACAATTTATGAACATGC+CGG - chr1_1:76866116-76866135 Msa0045160:intron 35.0%
GCATGGTTAGAATTGGAATT+TGG + chr1_1:76866172-76866191 None:intergenic 35.0%
TCATTTGGCATGGTTAGAAT+TGG + chr1_1:76866179-76866198 None:intergenic 35.0%
ATTCTAACCATGCCAAATGA+TGG - chr1_1:76866179-76866198 Msa0045160:intron 35.0%
TTCATTACCATCATTTGGCA+TGG + chr1_1:76866189-76866208 None:intergenic 35.0%
TCTTACCAGATATATTACGG+AGG - chr1_1:76866317-76866336 Msa0045160:intron 35.0%
CTTACCAGATATATTACGGA+GGG - chr1_1:76866318-76866337 Msa0045160:intron 35.0%
AACTAATCCAACATGGCTTA+TGG + chr1_1:76866416-76866435 None:intergenic 35.0%
ATGCAGTAACTAATCCAACA+TGG + chr1_1:76866423-76866442 None:intergenic 35.0%
!!! TGCTTACATTTTGGAACAGA+GGG + chr1_1:76866492-76866511 None:intergenic 35.0%
!!! TTGCTTACATTTTGGAACAG+AGG + chr1_1:76866493-76866512 None:intergenic 35.0%
CCAATCTCATACAATTCATC+AGG + chr1_1:76866844-76866863 None:intergenic 35.0%
CCTGATGAATTGTATGAGAT+TGG - chr1_1:76866841-76866860 Msa0045160:intron 35.0%
! ATGGAAGAACATTGATTGGT+GGG + chr1_1:76866945-76866964 None:intergenic 35.0%
! AGTGATGGAAGAACATTGAT+TGG + chr1_1:76866949-76866968 None:intergenic 35.0%
ATGTTCTTCCATCACTATCT+CGG - chr1_1:76866953-76866972 Msa0045160:CDS 35.0%
GATTTCAAAGTTCTGTCAAG+TGG - chr1_1:76867003-76867022 Msa0045160:intron 35.0%
AGAGAAAATTAGTAGATGCC+AGG + chr1_1:76867350-76867369 None:intergenic 35.0%
TAGTGAAATTGTCCTTGAAG+TGG - chr1_1:76867391-76867410 Msa0045160:intron 35.0%
AGTGAAATTGTCCTTGAAGT+GGG - chr1_1:76867392-76867411 Msa0045160:intron 35.0%
CTTCATTAATACCCACTTCA+AGG + chr1_1:76867406-76867425 None:intergenic 35.0%
! AATTTCTGGACAAGTTTGAG+AGG - chr1_1:76867462-76867481 Msa0045160:intron 35.0%
TAGAGACTGGAATATATTGC+GGG + chr1_1:76867516-76867535 None:intergenic 35.0%
CTAGAGACTGGAATATATTG+CGG + chr1_1:76867517-76867536 None:intergenic 35.0%
GATCTTCCTAAACCCAAGAT+AGG - chr1_1:76858935-76858954 Msa0045160:intron 40.0%
TCTTCACCTATCTTGGGTTT+AGG + chr1_1:76858944-76858963 None:intergenic 40.0%
TGAGACGTTAACCTTTAACC+TGG - chr1_1:76859029-76859048 Msa0045160:intron 40.0%
! TTAGTTGGTGTCCAGGTTAA+AGG + chr1_1:76859043-76859062 None:intergenic 40.0%
TCGATTGAGAAGAAAACGAC+GGG + chr1_1:76859204-76859223 None:intergenic 40.0%
CTCGATTGAGAAGAAAACGA+CGG + chr1_1:76859205-76859224 None:intergenic 40.0%
!!! TTGTTTTGAATAGCTCCCTC+CGG - chr1_1:76859516-76859535 Msa0045160:intron 40.0%
!! TGCCACATTTGAGCTGATTT+TGG - chr1_1:76859672-76859691 Msa0045160:intron 40.0%
CACCAAAATCAGCTCAAATG+TGG + chr1_1:76859677-76859696 None:intergenic 40.0%
CTGGATTGTAACATGAGGAA+AGG - chr1_1:76860197-76860216 Msa0045160:intron 40.0%
!! GAGGAAAGGAGAAGCATTAT+AGG - chr1_1:76860211-76860230 Msa0045160:intron 40.0%
!!! GGCATATTCGTTTTTTTGGG+TGG + chr1_1:76860386-76860405 None:intergenic 40.0%
! GATAATTTGTGGCGAAAGGT+TGG + chr1_1:76860415-76860434 None:intergenic 40.0%
GTCTATCCATGGTAAATGAG+TGG + chr1_1:76860456-76860475 None:intergenic 40.0%
ATGCCCCATCAAAATTTAGC+AGG + chr1_1:76860874-76860893 None:intergenic 40.0%
!! CTAAATTTTGATGGGGCATC+TGG - chr1_1:76860875-76860894 Msa0045160:intron 40.0%
CTTCATGAAGCAAGAGTAAG+TGG + chr1_1:76860966-76860985 None:intergenic 40.0%
TTGCTTCATGAAGCCTTCTT+TGG - chr1_1:76860973-76860992 Msa0045160:intron 40.0%
ATATACAGAAGGGCCAAAGA+AGG + chr1_1:76860989-76861008 None:intergenic 40.0%
ACATGGAAATTCCAGTTCGA+AGG - chr1_1:76861143-76861162 Msa0045160:intron 40.0%
GCTCTTGCTTAATGTTCTTG+AGG + chr1_1:76861220-76861239 None:intergenic 40.0%
ACTTGCAAAAGATGGAGACA+GGG + chr1_1:76861441-76861460 None:intergenic 40.0%
TAGTCAATGAAGACAGCGTT+TGG - chr1_1:76862234-76862253 Msa0045160:intron 40.0%
CAAGTCTAAATGTATGCAGC+TGG + chr1_1:76862458-76862477 None:intergenic 40.0%
CAGCTGCATACATTTAGACT+TGG - chr1_1:76862456-76862475 Msa0045160:intron 40.0%
ATCTTGTGTAATACTCCCTC+CGG - chr1_1:76862718-76862737 Msa0045160:CDS 40.0%
ACAGAATACATGACTGTGTC+TGG - chr1_1:76863141-76863160 Msa0045160:intron 40.0%
TAACTTCGGTCAACTGCATT+AGG - chr1_1:76863281-76863300 Msa0045160:intron 40.0%
AACTTCGGTCAACTGCATTA+GGG - chr1_1:76863282-76863301 Msa0045160:intron 40.0%
GTCAATATTCGTTTAGGCGA+TGG - chr1_1:76863324-76863343 Msa0045160:intron 40.0%
! GTCAGAAGCTCAGAACATTT+TGG + chr1_1:76863465-76863484 None:intergenic 40.0%
AATAAAGCAGACAACGATGG+AGG + chr1_1:76863508-76863527 None:intergenic 40.0%
GTGAATAAAGCAGACAACGA+TGG + chr1_1:76863511-76863530 None:intergenic 40.0%
! CAGGTATTTGAAGGTACATC+TGG - chr1_1:76863636-76863655 Msa0045160:intron 40.0%
TTTACGACCGTACAGTTTAC+TGG - chr1_1:76863672-76863691 Msa0045160:intron 40.0%
TACCTCTCCAGTAAACTGTA+CGG + chr1_1:76863682-76863701 None:intergenic 40.0%
! TATCATTATCTGGGACGGTT+TGG + chr1_1:76863948-76863967 None:intergenic 40.0%
GCTTAGGTGATAGTTACGAT+TGG + chr1_1:76863983-76864002 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr1_1:76864632-76864651 None:intergenic 40.0%
AGTTTCTTCACAGGAGTTGT+TGG + chr1_1:76864758-76864777 None:intergenic 40.0%
TCCCCCTTATTCTGGTAATT+TGG - chr1_1:76865123-76865142 Msa0045160:intron 40.0%
AGCCATTCAACCATCAATAC+TGG + chr1_1:76865174-76865193 None:intergenic 40.0%
ACCAAACACATGTGAAGTGT+AGG - chr1_1:76865411-76865430 Msa0045160:intron 40.0%
CCAAACACATGTGAAGTGTA+GGG - chr1_1:76865412-76865431 Msa0045160:intron 40.0%
GTGATGATACGTTCGATTGT+AGG + chr1_1:76865686-76865705 None:intergenic 40.0%
CTTCTTGTTCTTGATCCTAC+AGG - chr1_1:76866028-76866047 Msa0045160:intron 40.0%
TATCTGGTAAGATCAGGAGT+TGG + chr1_1:76866309-76866328 None:intergenic 40.0%
AGGGACAGATATACATCGAT+AGG - chr1_1:76866337-76866356 Msa0045160:intron 40.0%
TAGGCAGTTGCATAATAGAC+AGG - chr1_1:76866356-76866375 Msa0045160:intron 40.0%
CAGTTGCATAATAGACAGGT+GGG - chr1_1:76866360-76866379 Msa0045160:intron 40.0%
ATGAATGCCATAAGCCATGT+TGG - chr1_1:76866406-76866425 Msa0045160:intron 40.0%
TACAATCAGTCTAAGTGACC+TGG - chr1_1:76866866-76866885 Msa0045160:CDS 40.0%
! GATGGAAGAACATTGATTGG+TGG + chr1_1:76866946-76866965 None:intergenic 40.0%
TTCATCAACCGAGATAGTGA+TGG + chr1_1:76866964-76866983 None:intergenic 40.0%
!! ATCACTATCTCGGTTGATGA+AGG - chr1_1:76866963-76866982 Msa0045160:intron 40.0%
CTGTATGCAACTTATGCCAT+TGG - chr1_1:76867267-76867286 Msa0045160:intron 40.0%
TGCAACTTATGCCATTGGAA+AGG - chr1_1:76867272-76867291 Msa0045160:intron 40.0%
!! AGAAGAAGCACTTTCATCTG+AGG - chr1_1:76867323-76867342 Msa0045160:intron 40.0%
! ACGGTTGTATCTGGAATTTC+TGG - chr1_1:76867448-76867467 Msa0045160:intron 40.0%
ATCTTGCATGGACTTTACTC+CGG - chr1_1:76867537-76867556 Msa0045160:intron 40.0%
! TACGATGAAGAAGTACACGA+GGG + chr1_1:76867568-76867587 None:intergenic 40.0%
! ATACGATGAAGAAGTACACG+AGG + chr1_1:76867569-76867588 None:intergenic 40.0%
GTAAAACTGGTCAAGAGTCT+TGG + chr1_1:76867597-76867616 None:intergenic 40.0%
ATACAAACTATCGGGGTGTG+CGG + chr1_1:76858764-76858783 None:intergenic 45.0%
CTTTCACTCATCCGCATTCA+AGG - chr1_1:76858824-76858843 Msa0045160:CDS 45.0%
ACTCTGTTCTGTCTGGTATG+TGG + chr1_1:76858867-76858886 None:intergenic 45.0%
!!! GATGGTTTTAGTTGGTGTCC+AGG + chr1_1:76859050-76859069 None:intergenic 45.0%
!!! ACGGTTTTTGAGGTCTTGGA+GGG + chr1_1:76859157-76859176 None:intergenic 45.0%
! GAAGAAGACGACGGTTTTTG+AGG + chr1_1:76859167-76859186 None:intergenic 45.0%
!! GAGGTTGATGAAGAAGACGA+CGG + chr1_1:76859176-76859195 None:intergenic 45.0%
AAGAAAACGACGGGATTGAG+AGG + chr1_1:76859195-76859214 None:intergenic 45.0%
TGTCACGTCTTCTGATTCTC+CGG - chr1_1:76859229-76859248 Msa0045160:intron 45.0%
ACTGAAGACAGTAGCCATCA+GGG + chr1_1:76859457-76859476 None:intergenic 45.0%
AACTGAAGACAGTAGCCATC+AGG + chr1_1:76859458-76859477 None:intergenic 45.0%
!! TTTAGCAAACAAGCACCGGA+GGG + chr1_1:76859534-76859553 None:intergenic 45.0%
!! ATTTAGCAAACAAGCACCGG+AGG + chr1_1:76859535-76859554 None:intergenic 45.0%
!! TCGATTTGGGGCTTGTGTTA+TGG + chr1_1:76859741-76859760 None:intergenic 45.0%
GGTCTCTGGATTGTAACATG+AGG - chr1_1:76860192-76860211 Msa0045160:intron 45.0%
TCCATGGTAAATGAGTGGGT+GGG + chr1_1:76860451-76860470 None:intergenic 45.0%
ATCCATGGTAAATGAGTGGG+TGG + chr1_1:76860452-76860471 None:intergenic 45.0%
!! AATTTTGATGGGGCATCTGG+TGG - chr1_1:76860878-76860897 Msa0045160:intron 45.0%
!! ATTTTGATGGGGCATCTGGT+GGG - chr1_1:76860879-76860898 Msa0045160:intron 45.0%
! AGCAAGAGCAGACCAAGTTT+TGG - chr1_1:76861231-76861250 Msa0045160:intron 45.0%
CACGATGCTCTTCCAAAACT+TGG + chr1_1:76861246-76861265 None:intergenic 45.0%
TCATAGGGGTGAGCACAAAA+AGG + chr1_1:76861360-76861379 None:intergenic 45.0%
CACTTGCAAAAGATGGAGAC+AGG + chr1_1:76861442-76861461 None:intergenic 45.0%
! CCTTCATTAGCTCTTCATGC+AGG + chr1_1:76861496-76861515 None:intergenic 45.0%
CCTGCATGAAGAGCTAATGA+AGG - chr1_1:76861493-76861512 Msa0045160:intron 45.0%
GAAGAGCTAATGAAGGTGAC+TGG - chr1_1:76861500-76861519 Msa0045160:intron 45.0%
ATATAAACCCACACTCCCAC+AGG + chr1_1:76861701-76861720 None:intergenic 45.0%
! GACTGGAGCATTAGACAATG+AGG + chr1_1:76861919-76861938 None:intergenic 45.0%
ATTCGCATTGCTTCAAACCC+TGG + chr1_1:76862103-76862122 None:intergenic 45.0%
CCAAAATAAGCACGACCAAG+AGG + chr1_1:76862357-76862376 None:intergenic 45.0%
! CCTCTTGGTCGTGCTTATTT+TGG - chr1_1:76862354-76862373 Msa0045160:intron 45.0%
!!! CTTGGTCGTGCTTATTTTGG+TGG - chr1_1:76862357-76862376 Msa0045160:intron 45.0%
! TGCTTACATTTGAGACCGGA+GGG + chr1_1:76862736-76862755 None:intergenic 45.0%
! TTGCTTACATTTGAGACCGG+AGG + chr1_1:76862737-76862756 None:intergenic 45.0%
TGGTTTCTCACATACTCCCT+CGG + chr1_1:76862872-76862891 None:intergenic 45.0%
! AGGGAGTATGTGAGAAACCA+GGG - chr1_1:76862872-76862891 Msa0045160:intron 45.0%
! ATGACTGTGTCTGGAGTTAC+CGG - chr1_1:76863150-76863169 Msa0045160:intron 45.0%
GGACAAGTTCTCGAGATTGA+TGG - chr1_1:76863360-76863379 Msa0045160:intron 45.0%
!! TCTCGAGATTGATGGCGAAA+AGG - chr1_1:76863368-76863387 Msa0045160:intron 45.0%
CACATAATTGAGCCGATGGT+TGG - chr1_1:76863899-76863918 Msa0045160:intron 45.0%
!! ATTATCTGGGACGGTTTGGT+AGG + chr1_1:76863944-76863963 None:intergenic 45.0%
!! ACAGCAGTTTTGGCATGCTT+AGG + chr1_1:76863999-76864018 None:intergenic 45.0%
TGACATGCAACACAGTCTGA+CGG + chr1_1:76864028-76864047 None:intergenic 45.0%
! CGATAAGGTTACAGTGCTGA+AGG - chr1_1:76864349-76864368 Msa0045160:intron 45.0%
ATGGATCAGTTATTCCGGGA+CGG + chr1_1:76864442-76864461 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr1_1:76864634-76864653 Msa0045160:CDS 45.0%
ATCATATACTACCTCCGTCC+CGG + chr1_1:76864651-76864670 None:intergenic 45.0%
ATCTTGATTTATGCAGGGGG+AGG - chr1_1:76864940-76864959 Msa0045160:intron 45.0%
!!! TGCCATTGTTTTTGCGGCTA+TGG - chr1_1:76864978-76864997 Msa0045160:intron 45.0%
!!! GCCATTGTTTTTGCGGCTAT+GGG - chr1_1:76864979-76864998 Msa0045160:intron 45.0%
TCCCATAGCCGCAAAAACAA+TGG + chr1_1:76864983-76865002 None:intergenic 45.0%
! AAGCGTGACTTTGAGGAGAA+TGG - chr1_1:76865030-76865049 Msa0045160:intron 45.0%
! CTTTGAGGAGAATGGCTCAA+TGG - chr1_1:76865038-76865057 Msa0045160:intron 45.0%
CCCTACACTTCACATGTGTT+TGG + chr1_1:76865415-76865434 None:intergenic 45.0%
GCAGTAGTAAGAGCAATACG+AGG + chr1_1:76865710-76865729 None:intergenic 45.0%
TTATGCTGATGCTCTTCGTG+AGG - chr1_1:76865790-76865809 Msa0045160:intron 45.0%
TGAACATGCCGGAAGAATTG+AGG - chr1_1:76866127-76866146 Msa0045160:intron 45.0%
GAACATGCCGGAAGAATTGA+GGG - chr1_1:76866128-76866147 Msa0045160:intron 45.0%
AACATGCCGGAAGAATTGAG+GGG - chr1_1:76866129-76866148 Msa0045160:intron 45.0%
TTTACGCCCCTCAATTCTTC+CGG + chr1_1:76866138-76866157 None:intergenic 45.0%
CTGTCCCTCCGTAATATATC+TGG + chr1_1:76866325-76866344 None:intergenic 45.0%
GCAGTTGCATAATAGACAGG+TGG - chr1_1:76866359-76866378 Msa0045160:intron 45.0%
TGGCTTATGGCATTCATCAC+AGG + chr1_1:76866403-76866422 None:intergenic 45.0%
TCATTCTGATGTGTCCAACC+AGG - chr1_1:76867129-76867148 Msa0045160:intron 45.0%
CAAACAAGAAGAGACCTGGT+TGG + chr1_1:76867146-76867165 None:intergenic 45.0%
GGAACAAACAAGAAGAGACC+TGG + chr1_1:76867150-76867169 None:intergenic 45.0%
! GAATATATTGCGGGTGTCGT+AGG + chr1_1:76867507-76867526 None:intergenic 45.0%
TCCAGTCTCTAGATCTTGCA+TGG - chr1_1:76867525-76867544 Msa0045160:intron 45.0%
TCCATGCAAGATCTAGAGAC+TGG + chr1_1:76867529-76867548 None:intergenic 45.0%
GAAGTACACGAGGGAAAATC+CGG + chr1_1:76867559-76867578 None:intergenic 45.0%
!! AAAATTAAAAAATAAACAAA+AGG + chr1_1:76860090-76860109 None:intergenic 5.0%
!!! ATTATAATTTTTTTAATAAG+GGG + chr1_1:76865577-76865596 None:intergenic 5.0%
!!! CATTATAATTTTTTTAATAA+GGG + chr1_1:76865578-76865597 None:intergenic 5.0%
!!! TCATTATAATTTTTTTAATA+AGG + chr1_1:76865579-76865598 None:intergenic 5.0%
TACAAACTATCGGGGTGTGC+GGG + chr1_1:76858763-76858782 None:intergenic 50.0%
!!! AGCGGGTTCAGTGGTTTTGA+GGG + chr1_1:76859080-76859099 None:intergenic 50.0%
! GTGATGAGTGGGTTTCACGA+CGG + chr1_1:76859116-76859135 None:intergenic 50.0%
!! GCAACTCTGAGGTGATGAGT+GGG + chr1_1:76859127-76859146 None:intergenic 50.0%
!! AGCAACTCTGAGGTGATGAG+TGG + chr1_1:76859128-76859147 None:intergenic 50.0%
!!! GACGGTTTTTGAGGTCTTGG+AGG + chr1_1:76859158-76859177 None:intergenic 50.0%
!!! GACGACGGTTTTTGAGGTCT+TGG + chr1_1:76859161-76859180 None:intergenic 50.0%
!! GTTGGTGGTATCATCCCTGA+TGG - chr1_1:76859440-76859459 Msa0045160:intron 50.0%
TGTGGCGAAAGGTTGGAGAT+GGG + chr1_1:76860408-76860427 None:intergenic 50.0%
TTGTGGCGAAAGGTTGGAGA+TGG + chr1_1:76860409-76860428 None:intergenic 50.0%
CCATGGTAAATGAGTGGGTG+GGG + chr1_1:76860450-76860469 None:intergenic 50.0%
GAAGAGGTTGTCCTTCGAAC+TGG + chr1_1:76861157-76861176 None:intergenic 50.0%
!! AGAGCATCGTGTACTAGCAG+AGG - chr1_1:76861255-76861274 Msa0045160:intron 50.0%
! ATTAGCTCTTCATGCAGGCG+AGG + chr1_1:76861491-76861510 None:intergenic 50.0%
AGTAGGCTGAACTGCACTTG+TGG - chr1_1:76861666-76861685 Msa0045160:intron 50.0%
TTGTGGCAAGCTCTTCCTGT+GGG - chr1_1:76861683-76861702 Msa0045160:intron 50.0%
!! AGAGCTTGGTGTAGTCCTCT+TGG - chr1_1:76862339-76862358 Msa0045160:intron 50.0%
! TTGCCTACATTTGAGACCCG+AGG - chr1_1:76862852-76862871 Msa0045160:intron 50.0%
! TGCCTACATTTGAGACCCGA+GGG - chr1_1:76862853-76862872 Msa0045160:intron 50.0%
GGTTTCTCACATACTCCCTC+GGG + chr1_1:76862871-76862890 None:intergenic 50.0%
! GAGGGAGTATGTGAGAAACC+AGG - chr1_1:76862871-76862890 Msa0045160:intron 50.0%
GTTTAGGCGATGGAACTACC+CGG - chr1_1:76863334-76863353 Msa0045160:intron 50.0%
TCTCGAGAACTTGTCCATGC+CGG + chr1_1:76863356-76863375 None:intergenic 50.0%
TGGCGAAAAGGCTGTTGTTC+AGG - chr1_1:76863380-76863399 Msa0045160:intron 50.0%
GACCGTACAGTTTACTGGAG+AGG - chr1_1:76863677-76863696 Msa0045160:intron 50.0%
! ACGGGGGATAACAGCAGTTT+TGG + chr1_1:76864009-76864028 None:intergenic 50.0%
ACATGCAACACAGTCTGACG+GGG + chr1_1:76864026-76864045 None:intergenic 50.0%
GACATGCAACACAGTCTGAC+GGG + chr1_1:76864027-76864046 None:intergenic 50.0%
AGCCTGACGACAAATCTGTG+CGG + chr1_1:76864096-76864115 None:intergenic 50.0%
ATCAGTTATTCCGGGACGGA+GGG + chr1_1:76864438-76864457 None:intergenic 50.0%
TGCGGCTATGGGAGTTAACA+TGG - chr1_1:76864990-76865009 Msa0045160:intron 50.0%
! GGAAGAATTGAGGGGCGTAA+AGG - chr1_1:76866137-76866156 Msa0045160:intron 50.0%
! TCACCACTGCAGAGTGCTAT+TGG - chr1_1:76867085-76867104 Msa0045160:intron 50.0%
! CACCACTGCAGAGTGCTATT+GGG - chr1_1:76867086-76867105 Msa0045160:intron 50.0%
! ACCACTGCAGAGTGCTATTG+GGG - chr1_1:76867087-76867106 Msa0045160:intron 50.0%
TGGGGAGGGAATGACTAGAA+AGG - chr1_1:76867105-76867124 Msa0045160:intron 50.0%
TGCCATTGGAAAGGATGTCC+AGG - chr1_1:76867281-76867300 Msa0045160:intron 50.0%
TGCCTGGACATCCTTTCCAA+TGG + chr1_1:76867286-76867305 None:intergenic 50.0%
AGCACTTTCATCTGAGGACC+TGG - chr1_1:76867329-76867348 Msa0045160:intron 50.0%
AACTGGTCAAGAGTCTTGGC+TGG + chr1_1:76867593-76867612 None:intergenic 50.0%
CAGCATCTCGGCTGTAAAAC+TGG + chr1_1:76867610-76867629 None:intergenic 50.0%
! CAGTTTTACAGCCGAGATGC+TGG - chr1_1:76867608-76867627 Msa0045160:intron 50.0%
!! GAGCGGGTTCAGTGGTTTTG+AGG + chr1_1:76859081-76859100 None:intergenic 55.0%
! ATGAGTGGGTTTCACGACGG+CGG + chr1_1:76859113-76859132 None:intergenic 55.0%
AGGGTTTCGCAGCAACTCTG+AGG + chr1_1:76859138-76859157 None:intergenic 55.0%
GTGGCGAAAGGTTGGAGATG+GGG + chr1_1:76860407-76860426 None:intergenic 55.0%
TAAATGAGTGGGTGGGGAGC+TGG + chr1_1:76860444-76860463 None:intergenic 55.0%
CCCCACCCACTCATTTACCA+TGG - chr1_1:76860447-76860466 Msa0045160:intron 55.0%
CTTGTGGCAAGCTCTTCCTG+TGG - chr1_1:76861682-76861701 Msa0045160:intron 55.0%
AAGCTCTTCCTGTGGGAGTG+TGG - chr1_1:76861690-76861709 Msa0045160:intron 55.0%
! AGCTCTTCCTGTGGGAGTGT+GGG - chr1_1:76861691-76861710 Msa0045160:intron 55.0%
ATGCAGCTGGGAACACGTTC+AGG + chr1_1:76862445-76862464 None:intergenic 55.0%
CTCCCTCGGGTCTCAAATGT+AGG + chr1_1:76862858-76862877 None:intergenic 55.0%
CTCGAGAACTTGTCCATGCC+GGG + chr1_1:76863355-76863374 None:intergenic 55.0%
CATGCAACACAGTCTGACGG+GGG + chr1_1:76864025-76864044 None:intergenic 55.0%
TGCCGCACAGATTTGTCGTC+AGG - chr1_1:76864091-76864110 Msa0045160:intron 55.0%
GCACAGATTTGTCGTCAGGC+TGG - chr1_1:76864095-76864114 Msa0045160:intron 55.0%
GATCAGTTATTCCGGGACGG+AGG + chr1_1:76864439-76864458 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr1_1:76864637-76864656 Msa0045160:CDS 55.0%
CTCTGGCAGCAGATACCTGT+AGG + chr1_1:76866046-76866065 None:intergenic 55.0%
GGTATCTGCTGCCAGAGAAG+AGG - chr1_1:76866049-76866068 Msa0045160:intron 55.0%
TCTTCCTGGCACCTCTTCTC+TGG + chr1_1:76866063-76866082 None:intergenic 55.0%
CCAGGATAACCACGTCTTCC+TGG + chr1_1:76866077-76866096 None:intergenic 55.0%
CCAGGAAGACGTGGTTATCC+TGG - chr1_1:76866074-76866093 Msa0045160:intron 55.0%
TCCCCAATAGCACTCTGCAG+TGG + chr1_1:76867091-76867110 None:intergenic 55.0%
! ACTGCAGAGTGCTATTGGGG+AGG - chr1_1:76867090-76867109 Msa0045160:intron 55.0%
! CTGCAGAGTGCTATTGGGGA+GGG - chr1_1:76867091-76867110 Msa0045160:intron 55.0%
CAACGACAGCTTTCGTTGCC+TGG + chr1_1:76867302-76867321 None:intergenic 55.0%
CAGGCAACGAAAGCTGTCGT+TGG - chr1_1:76867300-76867319 Msa0045160:intron 55.0%
TGAGAGGAAGTCTGTTGCCC+AGG - chr1_1:76867478-76867497 Msa0045160:intron 55.0%
GAGAGGAAGTCTGTTGCCCA+GGG - chr1_1:76867479-76867498 Msa0045160:intron 55.0%
ACTATCGGGGTGTGCGGGTA+TGG + chr1_1:76858758-76858777 None:intergenic 60.0%
!! ATGCAGGCGAGGTGCTGTCT+CGG + chr1_1:76861480-76861499 None:intergenic 60.0%
CAATGCTACTCCCTCCGTCC+CGG - chr1_1:76864425-76864444 Msa0045160:intron 60.0%
!! GAAGAGGTGCCAGGAAGACG+TGG - chr1_1:76866065-76866084 Msa0045160:intron 60.0%
TCGGGGTGTGCGGGTATGGT+GGG + chr1_1:76858754-76858773 None:intergenic 65.0%
ATCGGGGTGTGCGGGTATGG+TGG + chr1_1:76858755-76858774 None:intergenic 65.0%
! GGGTGGATGAGCGGGTTCAG+TGG + chr1_1:76859089-76859108 None:intergenic 65.0%
GTGGGTTTCACGACGGCGGT+GGG + chr1_1:76859109-76859128 None:intergenic 65.0%
! AGTGGGTTTCACGACGGCGG+TGG + chr1_1:76859110-76859129 None:intergenic 65.0%
GGCGATGGAACTACCCGGCA+TGG - chr1_1:76863339-76863358 Msa0045160:intron 65.0%
!! GCTGCCAGAGAAGAGGTGCC+AGG - chr1_1:76866056-76866075 Msa0045160:intron 65.0%
GGGGTGTGCGGGTATGGTGG+GGG + chr1_1:76858752-76858771 None:intergenic 70.0%
CGGGGTGTGCGGGTATGGTG+GGG + chr1_1:76858753-76858772 None:intergenic 70.0%
ACGGCGGTGGGTGGATGAGC+GGG + chr1_1:76859097-76859116 None:intergenic 70.0%
GACGGCGGTGGGTGGATGAG+CGG + chr1_1:76859098-76859117 None:intergenic 70.0%
GGTTTCACGACGGCGGTGGG+TGG + chr1_1:76859106-76859125 None:intergenic 70.0%
! GCGGGTGTCGTAGGCTCCCT+GGG + chr1_1:76867498-76867517 None:intergenic 70.0%
! TGCGGGTGTCGTAGGCTCCC+TGG + chr1_1:76867499-76867518 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76858476 76867637 76858476 ID=Msa0045160;Name=Msa0045160
chr1_1 mRNA 76858476 76867637 76858476 ID=Msa0045160-mRNA-1;Parent=Msa0045160;Name=Msa0045160-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0.56|0.52|0.88|0.62|0.88|17|0|511
chr1_1 exon 76867633 76867637 76867633 ID=Msa0045160-mRNA-1:exon:26235;Parent=Msa0045160-mRNA-1
chr1_1 exon 76867481 76867488 76867481 ID=Msa0045160-mRNA-1:exon:26234;Parent=Msa0045160-mRNA-1
chr1_1 exon 76866863 76866972 76866863 ID=Msa0045160-mRNA-1:exon:26233;Parent=Msa0045160-mRNA-1
chr1_1 exon 76864849 76864955 76864849 ID=Msa0045160-mRNA-1:exon:26232;Parent=Msa0045160-mRNA-1
chr1_1 exon 76864599 76864716 76864599 ID=Msa0045160-mRNA-1:exon:26231;Parent=Msa0045160-mRNA-1
chr1_1 exon 76863693 76863774 76863693 ID=Msa0045160-mRNA-1:exon:26230;Parent=Msa0045160-mRNA-1
chr1_1 exon 76862913 76862968 76862913 ID=Msa0045160-mRNA-1:exon:26229;Parent=Msa0045160-mRNA-1
chr1_1 exon 76862712 76862810 76862712 ID=Msa0045160-mRNA-1:exon:26228;Parent=Msa0045160-mRNA-1
chr1_1 exon 76862428 76862464 76862428 ID=Msa0045160-mRNA-1:exon:26227;Parent=Msa0045160-mRNA-1
chr1_1 exon 76861027 76861157 76861027 ID=Msa0045160-mRNA-1:exon:26226;Parent=Msa0045160-mRNA-1
chr1_1 exon 76860302 76860439 76860302 ID=Msa0045160-mRNA-1:exon:26225;Parent=Msa0045160-mRNA-1
chr1_1 exon 76859913 76860063 76859913 ID=Msa0045160-mRNA-1:exon:26224;Parent=Msa0045160-mRNA-1
chr1_1 exon 76859736 76859818 76859736 ID=Msa0045160-mRNA-1:exon:26223;Parent=Msa0045160-mRNA-1
chr1_1 exon 76859129 76859176 76859129 ID=Msa0045160-mRNA-1:exon:26222;Parent=Msa0045160-mRNA-1
chr1_1 exon 76858963 76859016 76858963 ID=Msa0045160-mRNA-1:exon:26221;Parent=Msa0045160-mRNA-1
chr1_1 exon 76858700 76858846 76858700 ID=Msa0045160-mRNA-1:exon:26220;Parent=Msa0045160-mRNA-1
chr1_1 exon 76858476 76858637 76858476 ID=Msa0045160-mRNA-1:exon:26219;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76867633 76867637 76867633 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76867481 76867488 76867481 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76866863 76866972 76866863 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76864849 76864955 76864849 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76864599 76864716 76864599 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76863693 76863774 76863693 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76862913 76862968 76862913 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76862712 76862810 76862712 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76862428 76862464 76862428 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76861027 76861157 76861027 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76860302 76860439 76860302 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76859913 76860063 76859913 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76859736 76859818 76859736 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76859129 76859176 76859129 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76858963 76859016 76858963 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76858700 76858846 76858700 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
chr1_1 CDS 76858476 76858637 76858476 ID=Msa0045160-mRNA-1:cds;Parent=Msa0045160-mRNA-1
Gene Sequence

>Msa0045160

ATGATCTTTAAAGAGTTGCTGCGAAACCCTCCAAGACCTCAAAAACCGTCGTCTTCTTCATCAACCTCTCAATCCCGTCGTTTTCTTCTCAATCGAGTGTCTGTCACGTCTTCTGATTCTCCGTTCGAAGGACAACCTCTTCAGAAGCTTATTATGTTGTTAACAAGTGAGTTGAATCTTGACCTCAAGAACATTAAGCAAGAGCAGACCAAGTTTTGGAAGAGCATCGTAGAGCTATTAGATCAAGTTCAGTTGACTCGTGCATTTGCATCCCTGTCTCCATCTTTTGCAAGTGATTTCATACGGATTTCCGAGACAGCACCTCGCCTGCATGAAGAGCTAATGAAGAGAGCTTGGTGTAGTCCTCTTGGTCGTGCTTATTTTGGTGGCCAAGAAGTTATAGAAAATGTGCAACATACATTTAACCTTGAATACATGACTGTGTCTGGAGTTACCGGACCATTGGTCATTCTTGAGAAAGTTAAGGGACCCAAATATCAAGAGATTGTCAATATTCGTTTAGGCGATGGAACTACCCGGCATGGACAAGTTCTCGAGATTGATGGCGAAAAGGCTGTTGTTCAGGTACATCTGGGATTGACAATAAATTTACGACCGTACAGGGGAGGAGAAGACGACAATTTTGCCATTGTTTTTGCGGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAGCGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATCGAACGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATCTGGCTTATGAATGTGGCAAGCATGTTCTCGTGATACTCACAGATATGTGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCAGAGAAGAGGTGCCAGGAAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACATGCCGGAAGAATTGAGGGGCGTAAAGGCTCAATTACCCAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACCAGATATATTACGGAGGGACAGATATACATCGATAGGCAGTTGCATAATAGACAGATATACCCACCAATCAATGTTCTTCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGGGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTGTATGCAACTTATGCCATTGGAAAGGATGTCCAGGCAACGAAAGCTGTCGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGGCATCTACTAATTTTCTCTCGAGCTGTTTTTTTTTTTATATAGTGAAATTGTCCTTGAAGTGGTTTGAGAGGAAGTCTGTTGCCCAGGGAGCCTACGACACCCGCAATATATTCCAGTCTCTAGATCTTGCATGGACTTTACTCCGGATTTTCCCTCGTGTACTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAGATGCTGGTAATTGA
Protein sequence

>Msa0045160

MIFKELLRNPPRPQKPSSSSSTSQSRRFLLNRVSVTSSDSPFEGQPLQKLIMLLTSELNLDLKNIKQEQTKFWKSIVELLDQVQLTRAFASLSPSFASDFIRISETAPRLHEELMKRAWCSPLGRAYFGGQEVIENVQHTFNLEYMTVSGVTGPLVILEKVKGPKYQEIVNIRLGDGTTRHGQVLEIDGEKAVVQVHLGLTINLRPYRGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMCSYADALREVSAAREEVPGRRGYPGYMYTDLATIYEHAGRIEGRKGSITQIPILTMPNDDITHPTPDLTRYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYATYAIGKDVQATKAVVGEEALSSEDLASTNFLSSCFFFYIVKLSLKWFERKSVAQGAYDTRNIFQSLDLAWTLLRIFPRVLLHRIPAKTLDQFYSRDAGN*