Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa0045350 | 0.850614 | 1.515077e-60 | -8.615850e-47 |
| Msa0045090 | Msa0045350 | 0.964829 | 8.020949e-124 | -8.615850e-47 |
| Msa0045100 | Msa0045350 | 0.886456 | 3.365628e-72 | -8.615850e-47 |
| Msa0045110 | Msa0045350 | 0.806391 | 8.417436e-50 | -8.615850e-47 |
| Msa0045120 | Msa0045350 | 0.940787 | 1.281635e-100 | -8.615850e-47 |
| Msa0045140 | Msa0045350 | 0.942590 | 5.492763e-102 | -8.615850e-47 |
| Msa0045150 | Msa0045350 | 0.954286 | 4.162946e-112 | -8.615850e-47 |
| Msa0045160 | Msa0045350 | 0.904016 | 1.905296e-79 | -8.615850e-47 |
| Msa0045170 | Msa0045350 | 0.802205 | 6.265543e-49 | -8.615850e-47 |
| Msa0045190 | Msa0045350 | 0.865362 | 6.238905e-65 | -8.615850e-47 |
| Msa0045350 | Msa0045370 | 0.941208 | 6.194617e-101 | -8.615850e-47 |
| Msa0045350 | Msa0045380 | 0.860702 | 1.718306e-63 | -8.615850e-47 |
| Msa0045350 | Msa0045400 | 0.916780 | 1.179899e-85 | -8.615850e-47 |
| Msa0045350 | Msa0045420 | 0.804955 | 1.684681e-49 | -8.615850e-47 |
| Msa0045350 | Msa0045440 | 0.835373 | 1.742480e-56 | -8.615850e-47 |
| Msa0045350 | Msa0291070 | 0.825592 | 4.310498e-54 | -8.615850e-47 |
| Msa0045350 | Msa0329630 | 0.801537 | 8.593960e-49 | -8.615850e-47 |
| Msa0045350 | Msa0375440 | 0.810741 | 9.914717e-51 | -8.615850e-47 |
| Msa0045350 | Msa0375480 | 0.811644 | 6.316128e-51 | -8.615850e-47 |
| Msa0045350 | Msa0484480 | 0.824405 | 8.217468e-54 | -8.615850e-47 |
| Msa0045350 | Msa0960700 | -0.811392 | 7.163150e-51 | -8.615850e-47 |
| Msa0045350 | Msa1084980 | 0.834129 | 3.581869e-56 | -8.615850e-47 |
| Msa0045350 | Msa1085000 | 0.951051 | 4.606531e-109 | -8.615850e-47 |
| Msa0045350 | Msa1085010 | 0.881938 | 1.583381e-70 | -8.615850e-47 |
| Msa0045350 | Msa1085020 | 0.800951 | 1.132723e-48 | -8.615850e-47 |
| Msa0045350 | Msa1310870 | 0.811872 | 5.634416e-51 | -8.615850e-47 |
| Msa0045350 | Msa1426790 | 0.925239 | 2.399948e-90 | -8.615850e-47 |
| Msa0045350 | Msa1426820 | 0.893151 | 8.208167e-75 | -8.615850e-47 |
| Msa0045350 | Msa1426840 | 0.878884 | 1.956042e-69 | -8.615850e-47 |
| Msa0045350 | Msa1432570 | 0.844951 | 5.498755e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045350 | MtrunA17_Chr2g0301881 | 80.000 | 40 | 8 | 0 | 42 | 81 | 305 | 344 | 2.69e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 742 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 1_1:-77274869 | Msa0045350:CDS |
| TCATCAAGTTGTTGCTCCTT+TGG | 0.247457 | 1_1:+77263829 | None:intergenic |
| AGTGAATGTCTTCAGGTTAT+TGG | 0.274733 | 1_1:-77264057 | Msa0045350:intron |
| CTCCTTTGGCTGAATTTCAT+CGG | 0.335196 | 1_1:+77263843 | None:intergenic |
| TCCTTTGGCTGAATTTCATC+GGG | 0.402634 | 1_1:+77263844 | None:intergenic |
| TGGCGAAAAGGCTGTTGTTC+AGG | 0.415818 | 1_1:-77273842 | Msa0045350:intron |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+77275766 | None:intergenic |
| CTCGAGAACTTGTCCATGCC+GGG | 0.477725 | 1_1:+77273870 | None:intergenic |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 1_1:+77275773 | None:intergenic |
| GGACAAGTTCTCGAGATTGA+TGG | 0.478592 | 1_1:-77273862 | Msa0045350:CDS |
| TCTCGAGAACTTGTCCATGC+CGG | 0.512745 | 1_1:+77273869 | None:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 1_1:-77274884 | Msa0045350:CDS |
| TCTCGAGATTGATGGCGAAA+AGG | 0.527436 | 1_1:-77273854 | Msa0045350:CDS |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | 1_1:-77274824 | Msa0045350:intron |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | 1_1:+77275719 | None:intergenic |
| TGTCACGTCTTCTGATTCTC+CGG | 0.535001 | 1_1:-77277740 | Msa0045350:intron |
| GGCGATGGAACTACCCGGCA+TGG | 0.573515 | 1_1:-77273883 | Msa0045350:CDS |
| AAGAAAACGACGGGATTGAG+AGG | 0.586955 | 1_1:+77277777 | None:intergenic |
| GCCCGATGAAATTCAGCCAA+AGG | 0.588190 | 1_1:-77263845 | Msa0045350:CDS |
| TCGATTGAGAAGAAAACGAC+GGG | 0.590073 | 1_1:+77277768 | None:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | 1_1:-77275719 | Msa0045350:intron |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | 1_1:+77275724 | None:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 1_1:+77274869 | None:intergenic |
| AAAGGAGCAACAACTTGATG+AGG | 0.637693 | 1_1:-77263827 | None:intergenic |
| GTTTAGGCGATGGAACTACC+CGG | 0.678023 | 1_1:-77273888 | Msa0045350:intron |
| CTCGATTGAGAAGAAAACGA+CGG | 0.679795 | 1_1:+77277767 | None:intergenic |
| GAGGTTGATGAAGAAGACGA+CGG | 0.681666 | 1_1:+77277796 | None:intergenic |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 1_1:+77275774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATATAAAAAATTAA+TGG | - | chr1_1:77273228-77273247 | Msa0045350:intron | 0.0% |
| !! | ATATTAAAAAATAAAATAAA+AGG | + | chr1_1:77274837-77274856 | None:intergenic | 0.0% |
| !! | AAAAAATAAAATAAATTAAA+TGG | + | chr1_1:77274884-77274903 | None:intergenic | 0.0% |
| !! | AAAAATATAATAAAATTAAA+TGG | + | chr1_1:77274916-77274935 | None:intergenic | 0.0% |
| !!! | ATAATTATTTTTATAAAATT+TGG | - | chr1_1:77275181-77275200 | Msa0045350:intron | 0.0% |
| !!! | AAATTAAAATATTTTTTAAA+GGG | + | chr1_1:77275591-77275610 | None:intergenic | 0.0% |
| !!! | AAAATTAAAATATTTTTTAA+AGG | + | chr1_1:77275592-77275611 | None:intergenic | 0.0% |
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:77263867-77263886 | None:intergenic | 10.0% |
| !!! | ATATTTTAATTGAGAAAATT+GGG | - | chr1_1:77264946-77264965 | Msa0045350:intron | 10.0% |
| !! | AAAAAAAATGTATCTTAAAT+CGG | - | chr1_1:77267995-77268014 | Msa0045350:intron | 10.0% |
| !! | NNNNNNNAAAATGTTAAAGA+AGG | + | chr1_1:77269763-77269782 | None:intergenic | 10.0% |
| !!! | AATTTTTAATAAGACTTAAT+TGG | - | chr1_1:77270417-77270436 | Msa0045350:intron | 10.0% |
| !!! | ATTTTTAATAAGACTTAATT+GGG | - | chr1_1:77270418-77270437 | Msa0045350:intron | 10.0% |
| !!! | TTTTTTATATCTTTAAAATG+AGG | + | chr1_1:77270925-77270944 | None:intergenic | 10.0% |
| !!! | TAATTTATAATAGATTTTAG+AGG | - | chr1_1:77272128-77272147 | Msa0045350:intron | 10.0% |
| !!! | AAAAAGTTTTGAAATTAATT+GGG | + | chr1_1:77272502-77272521 | None:intergenic | 10.0% |
| !!! | AAAAAAGTTTTGAAATTAAT+TGG | + | chr1_1:77272503-77272522 | None:intergenic | 10.0% |
| !!! | TGATATTATTTTAAACAATA+TGG | - | chr1_1:77272665-77272684 | Msa0045350:intron | 10.0% |
| !! | ATTTAATGTTTATGTATAAA+AGG | + | chr1_1:77273574-77273593 | None:intergenic | 10.0% |
| !! | TATAATAAAATTAAATGGAA+CGG | + | chr1_1:77274911-77274930 | None:intergenic | 10.0% |
| !! | TACATAAGTATAATTTATTT+AGG | + | chr1_1:77275235-77275254 | None:intergenic | 10.0% |
| !! | ATAAATAATATCAAAATAGT+TGG | + | chr1_1:77275422-77275441 | None:intergenic | 10.0% |
| !! | TTAATTCATAATAAATTCAA+AGG | - | chr1_1:77275626-77275645 | Msa0045350:intron | 10.0% |
| !!! | TGAATTTATTATTTTTTTGA+TGG | + | chr1_1:77275730-77275749 | None:intergenic | 10.0% |
| !!! | TTTGATTTATTTTTGTTTTT+TGG | - | chr1_1:77276799-77276818 | Msa0045350:intron | 10.0% |
| !!! | TTTTTTTTTTAAGAAATCAT+CGG | - | chr1_1:77277176-77277195 | Msa0045350:intron | 10.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:77263962-77263981 | Msa0045350:intron | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:77264644-77264663 | Msa0045350:intron | 15.0% |
| !!! | CATATTTTAATTGAGAAAAT+TGG | - | chr1_1:77264945-77264964 | Msa0045350:intron | 15.0% |
| !!! | AAATATTTTGAATTCGATTT+GGG | + | chr1_1:77265105-77265124 | None:intergenic | 15.0% |
| !!! | AAAATATTTTGAATTCGATT+TGG | + | chr1_1:77265106-77265125 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTCTGTTTACTT+TGG | - | chr1_1:77265451-77265470 | Msa0045350:intron | 15.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:77266413-77266432 | None:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:77266713-77266732 | Msa0045350:intron | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:77266714-77266733 | Msa0045350:intron | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:77266749-77266768 | Msa0045350:intron | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:77266905-77266924 | None:intergenic | 15.0% |
| !! | TGTAAATCTATTGATATATT+GGG | - | chr1_1:77267684-77267703 | Msa0045350:intron | 15.0% |
| !!! | TAAACAGCATATATTTTTAT+GGG | + | chr1_1:77268885-77268904 | None:intergenic | 15.0% |
| !!! | ATAAACAGCATATATTTTTA+TGG | + | chr1_1:77268886-77268905 | None:intergenic | 15.0% |
| !!! | TTTTAACTTGAAATTTGTAT+TGG | - | chr1_1:77269192-77269211 | Msa0045350:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr1_1:77269446-77269465 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr1_1:77269445-77269464 | Msa0045350:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr1_1:77269469-77269488 | Msa0045350:intron | 15.0% |
| !!! | TCATTTGAAACAATTTTTTT+TGG | - | chr1_1:77269569-77269588 | Msa0045350:intron | 15.0% |
| !!! | ATTCAATGTTTTTTCTAATA+TGG | + | chr1_1:77270400-77270419 | None:intergenic | 15.0% |
| !! | TTTACTCATTAAAAAATATG+CGG | + | chr1_1:77270691-77270710 | None:intergenic | 15.0% |
| !!! | TTTTTTAATGAGTAAATCAA+AGG | - | chr1_1:77270695-77270714 | Msa0045350:intron | 15.0% |
| !!! | TTTAGGTTTTTTTTTTTCAT+CGG | + | chr1_1:77270839-77270858 | None:intergenic | 15.0% |
| !!! | TTCTTCATTTATTTTCTATT+GGG | + | chr1_1:77271484-77271503 | None:intergenic | 15.0% |
| !!! | TTTCTTCATTTATTTTCTAT+TGG | + | chr1_1:77271485-77271504 | None:intergenic | 15.0% |
| !!! | CTTATTTATTTCAATTTGTT+TGG | + | chr1_1:77272357-77272376 | None:intergenic | 15.0% |
| !! | AATTGAAATAAATAAGTCTA+AGG | - | chr1_1:77272361-77272380 | Msa0045350:intron | 15.0% |
| !!! | ATGTTTTAATATGTTCTTAA+TGG | - | chr1_1:77272424-77272443 | Msa0045350:intron | 15.0% |
| !! | TCTAATTAAAATACGATTAA+TGG | + | chr1_1:77273392-77273411 | None:intergenic | 15.0% |
| !! | ATTATATAGATATAGATTTG+AGG | - | chr1_1:77273750-77273769 | Msa0045350:intron | 15.0% |
| !! | TTATATAGATATAGATTTGA+GGG | - | chr1_1:77273751-77273770 | Msa0045350:intron | 15.0% |
| !! | TTCAATAAATTATCAAACTT+TGG | - | chr1_1:77274490-77274509 | Msa0045350:intron | 15.0% |
| !! | AGAAAGGAAATAAAAATATT+CGG | + | chr1_1:77275045-77275064 | None:intergenic | 15.0% |
| !!! | TATTATATTTGTTACATTGT+TGG | + | chr1_1:77275338-77275357 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTAAAAGTTGTTT+GGG | + | chr1_1:77275772-77275791 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTTAAAAGTTGTT+TGG | + | chr1_1:77275773-77275792 | None:intergenic | 15.0% |
| !!! | ATAATTGTTATTTTAACTTC+TGG | - | chr1_1:77276264-77276283 | Msa0045350:intron | 15.0% |
| !!! | TTTTTTTTTAAGAAATCATC+GGG | - | chr1_1:77277177-77277196 | Msa0045350:intron | 15.0% |
| !!! | TACATATTTAAAATTTCATG+TGG | - | chr1_1:77278116-77278135 | Msa0045350:intron | 15.0% |
| !!! | TATCATCAATTATTTGTTTT+AGG | - | chr1_1:77278404-77278423 | Msa0045350:intron | 15.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:77264057-77264076 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:77264124-77264143 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:77264326-77264345 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATTCGATTTG+GGG | + | chr1_1:77265104-77265123 | None:intergenic | 20.0% |
| !! | AATATACACCATATATGAAT+CGG | + | chr1_1:77265355-77265374 | None:intergenic | 20.0% |
| !! | TTCATATATGGTGTATATTT+AGG | - | chr1_1:77265356-77265375 | Msa0045350:intron | 20.0% |
| !!! | ACTTATTGTTAAGGAAATTT+TGG | - | chr1_1:77265522-77265541 | Msa0045350:intron | 20.0% |
| !! | TTAGATGTAATCATCATTAA+AGG | - | chr1_1:77265709-77265728 | Msa0045350:intron | 20.0% |
| !! | TAGATGTAATCATCATTAAA+GGG | - | chr1_1:77265710-77265729 | Msa0045350:intron | 20.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | chr1_1:77266482-77266501 | None:intergenic | 20.0% |
| !!! | ATCAATTTATTTCAAGTAGT+TGG | - | chr1_1:77267655-77267674 | Msa0045350:intron | 20.0% |
| !! | GTGTAAATCTATTGATATAT+TGG | - | chr1_1:77267683-77267702 | Msa0045350:intron | 20.0% |
| !!! | ATACATTTTTTTTTTTTCCC+TGG | + | chr1_1:77267988-77268007 | None:intergenic | 20.0% |
| !! | AAGTTTGAACACATTTAAAA+AGG | + | chr1_1:77268081-77268100 | None:intergenic | 20.0% |
| !! | AATAAAGAGACACATAATTT+AGG | + | chr1_1:77268213-77268232 | None:intergenic | 20.0% |
| !! | AGTTAAAATTTAGTCACAAA+GGG | + | chr1_1:77268364-77268383 | None:intergenic | 20.0% |
| !! | AAGTTAAAATTTAGTCACAA+AGG | + | chr1_1:77268365-77268384 | None:intergenic | 20.0% |
| !!! | TTGTGACTAAATTTTAACTT+CGG | - | chr1_1:77268365-77268384 | Msa0045350:intron | 20.0% |
| !! | AAACTATAAAATGACGTTAA+AGG | + | chr1_1:77268690-77268709 | None:intergenic | 20.0% |
| !! | CTTTATAATAACTATTGATC+AGG | - | chr1_1:77268715-77268734 | Msa0045350:intron | 20.0% |
| !! | TAACAGTTAATGCATTATTT+AGG | + | chr1_1:77268941-77268960 | None:intergenic | 20.0% |
| !! | TATCTTCTTTATCATTATCT+GGG | + | chr1_1:77269055-77269074 | None:intergenic | 20.0% |
| !! | TTATCTTCTTTATCATTATC+TGG | + | chr1_1:77269056-77269075 | None:intergenic | 20.0% |
| !! | TAAATTCTGCTTAGAAAAAA+GGG | - | chr1_1:77269270-77269289 | Msa0045350:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr1_1:77269412-77269431 | Msa0045350:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr1_1:77269455-77269474 | None:intergenic | 20.0% |
| !!! | AAGAAAAAGTATTATTGCAT+TGG | - | chr1_1:77269531-77269550 | Msa0045350:intron | 20.0% |
| !! | TTCAATTCAATAACAATACT+TGG | + | chr1_1:77269707-77269726 | None:intergenic | 20.0% |
| !! | TAAAAGTTCTTCCTTTAAAT+TGG | - | chr1_1:77269728-77269747 | Msa0045350:intron | 20.0% |
| !!! | CTTTTAACAACTCTTTTTTT+TGG | - | chr1_1:77269881-77269900 | Msa0045350:intron | 20.0% |
| !!! | GTTTTTGTATTATAATACGA+GGG | + | chr1_1:77270361-77270380 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTATTATAATACG+AGG | + | chr1_1:77270362-77270381 | None:intergenic | 20.0% |
| !! | AAATCAAGCAAAAAAAAAAG+TGG | - | chr1_1:77270506-77270525 | Msa0045350:intron | 20.0% |
| !! | ACATGTTTGAAAATTAATCA+TGG | - | chr1_1:77270643-77270662 | Msa0045350:intron | 20.0% |
| !!! | GTATTAAAAACATTTGTTAG+AGG | + | chr1_1:77270813-77270832 | None:intergenic | 20.0% |
| !! | AAACCTAAACAAAATGATTA+AGG | - | chr1_1:77270850-77270869 | Msa0045350:intron | 20.0% |
| !! | TTTGAATGAAAGTCAATTAA+TGG | - | chr1_1:77270998-77271017 | Msa0045350:intron | 20.0% |
| !! | TTGAATGAAAGTCAATTAAT+GGG | - | chr1_1:77270999-77271018 | Msa0045350:intron | 20.0% |
| !! | ATATAAACGAAAAAAACAGA+TGG | - | chr1_1:77271594-77271613 | Msa0045350:intron | 20.0% |
| !!! | ATTCTAAAGAAAGAAAATCA+GGG | + | chr1_1:77271975-77271994 | None:intergenic | 20.0% |
| !! | TTTGATTGAATGATATCAAT+AGG | - | chr1_1:77272244-77272263 | Msa0045350:intron | 20.0% |
| !!! | GTTGATTCTTCTTTTTTTTT+TGG | - | chr1_1:77272300-77272319 | Msa0045350:intron | 20.0% |
| !! | TTTCCTTAAAAAAAAGTCTA+AGG | - | chr1_1:77272390-77272409 | Msa0045350:intron | 20.0% |
| !!! | AAACCTTAGACTTTTTTTTA+AGG | + | chr1_1:77272396-77272415 | None:intergenic | 20.0% |
| !! | TGAATGGTATATTATTGAAA+CGG | + | chr1_1:77272477-77272496 | None:intergenic | 20.0% |
| !!! | TGTGTATTTTTTTATTTGAC+TGG | + | chr1_1:77272528-77272547 | None:intergenic | 20.0% |
| !! | ATATGCATTAATATATTCTG+TGG | + | chr1_1:77272763-77272782 | None:intergenic | 20.0% |
| !! | GTTCAGAATTCTTATTAAAA+AGG | + | chr1_1:77272860-77272879 | None:intergenic | 20.0% |
| !!! | TGATTCTTTTAGAAAAAATC+AGG | + | chr1_1:77272946-77272965 | None:intergenic | 20.0% |
| !! | TATTGTATAGTAACATAGTA+AGG | + | chr1_1:77273124-77273143 | None:intergenic | 20.0% |
| !! | ACATTAAATACAAATTTGTG+AGG | - | chr1_1:77273585-77273604 | Msa0045350:intron | 20.0% |
| !! | AGAAAAAACATTTCCATAAA+GGG | - | chr1_1:77273703-77273722 | Msa0045350:intron | 20.0% |
| !!! | TTTAAAACTTCTGAAATATG+TGG | - | chr1_1:77274135-77274154 | Msa0045350:intron | 20.0% |
| !!! | TTAAAACTTCTGAAATATGT+GGG | - | chr1_1:77274136-77274155 | Msa0045350:intron | 20.0% |
| !! | AAAAGAAGTTACACAAATTA+TGG | + | chr1_1:77274303-77274322 | None:intergenic | 20.0% |
| !!! | ATTTAATAAAAAGTTTGGTG+AGG | + | chr1_1:77274524-77274543 | None:intergenic | 20.0% |
| !!! | TCAACTTTTCTACATTTTTA+AGG | - | chr1_1:77274638-77274657 | Msa0045350:intron | 20.0% |
| !! | CCTAGTTTATTACAATATAA+AGG | + | chr1_1:77275267-77275286 | None:intergenic | 20.0% |
| !! | CCTTTATATTGTAATAAACT+AGG | - | chr1_1:77275264-77275283 | Msa0045350:intron | 20.0% |
| !! | TGAATAGGAGAAATAATTTA+AGG | + | chr1_1:77275461-77275480 | None:intergenic | 20.0% |
| !! | AAATTCGTATCATCATATAA+AGG | + | chr1_1:77275494-77275513 | None:intergenic | 20.0% |
| !! | TCAATGTATAAATATATGCA+AGG | - | chr1_1:77275682-77275701 | Msa0045350:intron | 20.0% |
| !!! | TTTTTTTTACAAAAGATCTC+AGG | - | chr1_1:77275912-77275931 | Msa0045350:intron | 20.0% |
| !! | AATGCATAAAATGAAAAAAC+AGG | + | chr1_1:77276160-77276179 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTTTGATGCATA+TGG | - | chr1_1:77276295-77276314 | Msa0045350:intron | 20.0% |
| !!! | TGAATTTTTTTGATGCATAT+GGG | - | chr1_1:77276296-77276315 | Msa0045350:intron | 20.0% |
| !! | ATAAAAATTGTTACACCTTT+AGG | + | chr1_1:77276372-77276391 | None:intergenic | 20.0% |
| !!! | GAATTGTTGTATTTCTATAT+AGG | - | chr1_1:77276603-77276622 | Msa0045350:intron | 20.0% |
| !! | GTAACATTGATAAATCATAA+AGG | + | chr1_1:77276765-77276784 | None:intergenic | 20.0% |
| !! | ATCTATAAGAACCTTATAAT+AGG | + | chr1_1:77277151-77277170 | None:intergenic | 20.0% |
| !!! | ATATTTAAAATTTCATGTGG+TGG | - | chr1_1:77278119-77278138 | Msa0045350:intron | 20.0% |
| !!! | TATCCATTTTATCATATACA+AGG | - | chr1_1:77278187-77278206 | Msa0045350:intron | 20.0% |
| !!! | AGATGTTTTGGATATATTTT+AGG | + | chr1_1:77278332-77278351 | None:intergenic | 20.0% |
| !!! | ACAAATAATTGATGATAGTA+TGG | + | chr1_1:77278401-77278420 | None:intergenic | 20.0% |
| !!! | TTAATTTTCTCAATGACAAT+AGG | + | chr1_1:77278443-77278462 | None:intergenic | 20.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:77264122-77264141 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:77264123-77264142 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:77264158-77264177 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:77264159-77264178 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:77264256-77264275 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:77264257-77264276 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:77264327-77264346 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:77264325-77264344 | Msa0045350:intron | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:77264409-77264428 | None:intergenic | 25.0% |
| ! | TTAATTGAGAAAATTGGGTT+TGG | - | chr1_1:77264951-77264970 | Msa0045350:intron | 25.0% |
| !!! | TTTTAATTTTTGTGCTGAAG+TGG | - | chr1_1:77264996-77265015 | Msa0045350:intron | 25.0% |
| ! | AATAAACAAAAGGAAGAAAG+AGG | + | chr1_1:77265431-77265450 | None:intergenic | 25.0% |
| ! | GGATGATATACTTATTGTTA+AGG | - | chr1_1:77265513-77265532 | Msa0045350:intron | 25.0% |
| ! | AATTAGATATCAGTTGCTAA+AGG | - | chr1_1:77265610-77265629 | Msa0045350:intron | 25.0% |
| ! | ATTCCTAGATATGAGAAAAT+GGG | + | chr1_1:77265649-77265668 | None:intergenic | 25.0% |
| ! | TATTCCTAGATATGAGAAAA+TGG | + | chr1_1:77265650-77265669 | None:intergenic | 25.0% |
| ! | TTCCACAGATTTCAAATAAT+AGG | + | chr1_1:77265684-77265703 | None:intergenic | 25.0% |
| ! | TTCATGTTTGTTCTTTAGTT+TGG | - | chr1_1:77265876-77265895 | Msa0045350:intron | 25.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | chr1_1:77266033-77266052 | None:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | chr1_1:77266120-77266139 | None:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | chr1_1:77266121-77266140 | None:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | chr1_1:77266144-77266163 | Msa0045350:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | chr1_1:77266168-77266187 | Msa0045350:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | chr1_1:77266169-77266188 | Msa0045350:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | chr1_1:77266218-77266237 | Msa0045350:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | chr1_1:77266351-77266370 | None:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | chr1_1:77266352-77266371 | None:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | chr1_1:77266483-77266502 | None:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:77266652-77266671 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | chr1_1:77266696-77266715 | None:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | chr1_1:77266752-77266771 | Msa0045350:intron | 25.0% |
| ! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:77267033-77267052 | None:intergenic | 25.0% |
| ! | AAAGAAATTGTTGTAGATGA+AGG | + | chr1_1:77267144-77267163 | None:intergenic | 25.0% |
| !! | TATGATTTTTCTCTGAACTT+TGG | - | chr1_1:77267266-77267285 | Msa0045350:intron | 25.0% |
| !! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:77267321-77267340 | None:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:77267355-77267374 | Msa0045350:intron | 25.0% |
| ! | AACAAGTTGTTTAATAGCAT+TGG | - | chr1_1:77267629-77267648 | Msa0045350:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr1_1:77267910-77267929 | None:intergenic | 25.0% |
| !!! | TAGGCAACTTTTTACTTTTT+AGG | + | chr1_1:77267935-77267954 | None:intergenic | 25.0% |
| !! | AAAATCACACATTTTAGATC+AGG | + | chr1_1:77268025-77268044 | None:intergenic | 25.0% |
| ! | AATACCATAAGTTATCAACA+CGG | + | chr1_1:77268166-77268185 | None:intergenic | 25.0% |
| ! | TTGACAATCTCTTGATATTT+GGG | + | chr1_1:77268407-77268426 | None:intergenic | 25.0% |
| ! | ATTGACAATCTCTTGATATT+TGG | + | chr1_1:77268408-77268427 | None:intergenic | 25.0% |
| ! | AATCTTATTATGCATGCTTA+AGG | + | chr1_1:77268510-77268529 | None:intergenic | 25.0% |
| ! | TGTCTTATCTCAATGAAATT+TGG | - | chr1_1:77268906-77268925 | Msa0045350:intron | 25.0% |
| ! | CTAAATTCTGCTTAGAAAAA+AGG | - | chr1_1:77269269-77269288 | Msa0045350:intron | 25.0% |
| ! | AAATTCTGCTTAGAAAAAAG+GGG | - | chr1_1:77269271-77269290 | Msa0045350:intron | 25.0% |
| ! | TTGAAATTCTAGTAATCACA+TGG | - | chr1_1:77269309-77269328 | Msa0045350:intron | 25.0% |
| !!! | TTCCTTTAAATTGGTTTTCT+TGG | - | chr1_1:77269737-77269756 | Msa0045350:intron | 25.0% |
| ! | TGACAAATCAATATTTGAGT+AGG | + | chr1_1:77269989-77270008 | None:intergenic | 25.0% |
| !! | TGTATCTTTTAACATAAGAG+AGG | + | chr1_1:77270304-77270323 | None:intergenic | 25.0% |
| !!! | TCAAACTTCTTTTAAGGAAA+TGG | + | chr1_1:77270329-77270348 | None:intergenic | 25.0% |
| !! | TGTAACTCAAACTTCTTTTA+AGG | + | chr1_1:77270335-77270354 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCTAATATGGACT+TGG | + | chr1_1:77270394-77270413 | None:intergenic | 25.0% |
| ! | ATAAGACTTAATTGGGAAAA+AGG | - | chr1_1:77270425-77270444 | Msa0045350:intron | 25.0% |
| ! | TAAGACTTAATTGGGAAAAA+GGG | - | chr1_1:77270426-77270445 | Msa0045350:intron | 25.0% |
| !! | TATGTTATGTGAAACCTTTT+AGG | + | chr1_1:77270473-77270492 | None:intergenic | 25.0% |
| ! | TTAAAAAATATGCGGCATTT+AGG | + | chr1_1:77270683-77270702 | None:intergenic | 25.0% |
| ! | AGATACTAAGATTCGTTTAA+GGG | - | chr1_1:77270779-77270798 | Msa0045350:intron | 25.0% |
| !!! | ACTCCTTAATCATTTTGTTT+AGG | + | chr1_1:77270856-77270875 | None:intergenic | 25.0% |
| ! | GACATAAATGGTAGATATAT+TGG | + | chr1_1:77270879-77270898 | None:intergenic | 25.0% |
| ! | CATATATTGTGTGACATAAA+TGG | + | chr1_1:77270891-77270910 | None:intergenic | 25.0% |
| ! | TTATGTCACACAATATATGT+TGG | - | chr1_1:77270892-77270911 | Msa0045350:intron | 25.0% |
| ! | GACTTTCATTCAAATTGATT+TGG | + | chr1_1:77270992-77271011 | None:intergenic | 25.0% |
| ! | AGAGTATAAGACATTTGAAT+CGG | - | chr1_1:77271085-77271104 | Msa0045350:intron | 25.0% |
| !! | GCATATTTGATATTTTCAGT+AGG | + | chr1_1:77271308-77271327 | None:intergenic | 25.0% |
| ! | CTTATATCTTCATGATTCTT+TGG | + | chr1_1:77271573-77271592 | None:intergenic | 25.0% |
| !! | CATTCTAAAGAAAGAAAATC+AGG | + | chr1_1:77271976-77271995 | None:intergenic | 25.0% |
| !!! | CTGATTTTCTTTCTTTAGAA+TGG | - | chr1_1:77271974-77271993 | Msa0045350:intron | 25.0% |
| ! | AGAAATGAAATAGAAAGAGA+AGG | - | chr1_1:77272070-77272089 | Msa0045350:intron | 25.0% |
| !!! | TTCTTCTTTTTTTTTTGGCT+CGG | - | chr1_1:77272305-77272324 | Msa0045350:intron | 25.0% |
| ! | TGAAATTAATTGGGATTGAA+TGG | + | chr1_1:77272493-77272512 | None:intergenic | 25.0% |
| ! | AAGTAGAAATGGTAGTATTA+TGG | + | chr1_1:77272580-77272599 | None:intergenic | 25.0% |
| ! | CAATGAAATCAAAGTAGAAA+TGG | + | chr1_1:77272591-77272610 | None:intergenic | 25.0% |
| ! | GGAAAATATGAGTTTAAATC+AGG | + | chr1_1:77272788-77272807 | None:intergenic | 25.0% |
| !!! | AAAAACGTATTGCTTTAGAA+AGG | + | chr1_1:77272809-77272828 | None:intergenic | 25.0% |
| ! | GAGAAAAAACATTTCCATAA+AGG | - | chr1_1:77273702-77273721 | Msa0045350:intron | 25.0% |
| !!! | TAAAACTTCTGAAATATGTG+GGG | - | chr1_1:77274137-77274156 | Msa0045350:intron | 25.0% |
| ! | AATAGATAGTTAGTAGAAAC+CGG | + | chr1_1:77274415-77274434 | None:intergenic | 25.0% |
| ! | TAGAAAAGTTGAGAAAAAAC+CGG | + | chr1_1:77274630-77274649 | None:intergenic | 25.0% |
| !!! | TACATTTTTAAGGAGAAGTT+AGG | - | chr1_1:77274648-77274667 | Msa0045350:intron | 25.0% |
| ! | CGTGAATAAAAATATTTGTG+AGG | + | chr1_1:77275006-77275025 | None:intergenic | 25.0% |
| ! | TAGAGTAACAAAAAAACAGA+CGG | + | chr1_1:77275125-77275144 | None:intergenic | 25.0% |
| ! | ATAGGAGAAATAATTTAAGG+AGG | + | chr1_1:77275458-77275477 | None:intergenic | 25.0% |
| ! | AAAGGACTTTATGTTTGAAT+AGG | + | chr1_1:77275476-77275495 | None:intergenic | 25.0% |
| !!! | TTATTTTTTTGATGGTGTCT+GGG | + | chr1_1:77275722-77275741 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTTGATGGTGTC+TGG | + | chr1_1:77275723-77275742 | None:intergenic | 25.0% |
| !!! | AAGATGGTTCTTTTTAGTTT+AGG | - | chr1_1:77275969-77275988 | Msa0045350:intron | 25.0% |
| !!! | TGTCTTGATGATTGAATTTT+AGG | - | chr1_1:77276089-77276108 | Msa0045350:intron | 25.0% |
| !! | GATGATTGAAATTTAGCTTA+TGG | - | chr1_1:77276229-77276248 | Msa0045350:intron | 25.0% |
| ! | CAAAATCAAACAACTAATCA+AGG | + | chr1_1:77276341-77276360 | None:intergenic | 25.0% |
| !! | GGTGTAACAATTTTTATGTT+TGG | - | chr1_1:77276375-77276394 | Msa0045350:intron | 25.0% |
| !!! | TGATTGGTGTAAATTTGTTT+TGG | - | chr1_1:77276434-77276453 | Msa0045350:intron | 25.0% |
| ! | TTTATGTATCATCAACTTTC+TGG | + | chr1_1:77276475-77276494 | None:intergenic | 25.0% |
| ! | ATTGATATCAGAATGAACAA+AGG | - | chr1_1:77276563-77276582 | Msa0045350:intron | 25.0% |
| ! | TTGATATCAGAATGAACAAA+GGG | - | chr1_1:77276564-77276583 | Msa0045350:intron | 25.0% |
| ! | ATATGTGATACAAAGGTTAT+AGG | - | chr1_1:77276714-77276733 | Msa0045350:intron | 25.0% |
| !!! | TTGTTTTTTGGTTTCTTTCT+CGG | - | chr1_1:77276811-77276830 | Msa0045350:intron | 25.0% |
| ! | AATAACTCGATATAGAGAAT+TGG | - | chr1_1:77276857-77276876 | Msa0045350:intron | 25.0% |
| ! | GAACTAAAAACAACCATAAA+GGG | + | chr1_1:77276978-77276997 | None:intergenic | 25.0% |
| ! | AGAACTAAAAACAACCATAA+AGG | + | chr1_1:77276979-77276998 | None:intergenic | 25.0% |
| !!! | TGTTTTTAGTTCTGATACAA+AGG | - | chr1_1:77276986-77277005 | Msa0045350:intron | 25.0% |
| ! | ATTTCACGTTAAGTCATTTA+AGG | - | chr1_1:77277049-77277068 | Msa0045350:intron | 25.0% |
| ! | TCATTTAAGGAAATTCAAGA+TGG | - | chr1_1:77277062-77277081 | Msa0045350:intron | 25.0% |
| !! | TTCAAAACTGACGTTTTATA+TGG | - | chr1_1:77277089-77277108 | Msa0045350:intron | 25.0% |
| !! | ATGTGTTTTCTCCTATTATA+AGG | - | chr1_1:77277137-77277156 | Msa0045350:intron | 25.0% |
| ! | ACATTGTATTGAGAGATTAA+AGG | - | chr1_1:77277258-77277277 | Msa0045350:intron | 25.0% |
| ! | AGCCAAATATATGTAACAAT+TGG | - | chr1_1:77277545-77277564 | Msa0045350:intron | 25.0% |
| ! | GACCAATTGTTACATATATT+TGG | + | chr1_1:77277550-77277569 | None:intergenic | 25.0% |
| ! | AATATATGTAACAATTGGTC+AGG | - | chr1_1:77277550-77277569 | Msa0045350:intron | 25.0% |
| ! | ATACATACTGCATCATTATT+GGG | - | chr1_1:77277957-77277976 | Msa0045350:intron | 25.0% |
| ! | TAAATATGTAACCTAGTCAA+TGG | + | chr1_1:77278106-77278125 | None:intergenic | 25.0% |
| ! | CTACCTTGTATATGATAAAA+TGG | + | chr1_1:77278193-77278212 | None:intergenic | 25.0% |
| !! | ATAAGCTTGAATTTGTGTTT+TGG | - | chr1_1:77278237-77278256 | Msa0045350:intron | 25.0% |
| !! | TAAGCTTGAATTTGTGTTTT+GGG | - | chr1_1:77278238-77278257 | Msa0045350:intron | 25.0% |
| !! | AGTAGTTTATCTAGATGTTT+TGG | + | chr1_1:77278344-77278363 | None:intergenic | 25.0% |
| ! | AAACATCTAGATAAACTACT+CGG | - | chr1_1:77278344-77278363 | Msa0045350:intron | 25.0% |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:77264192-77264211 | Msa0045350:intron | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:77264225-77264244 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:77264255-77264274 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:77264301-77264320 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:77264302-77264321 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:77264364-77264383 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:77264685-77264704 | Msa0045350:intron | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:77264750-77264769 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:77264773-77264792 | Msa0045350:intron | 30.0% | |
| CAGTATTTGAGTAACATAAC+CGG | + | chr1_1:77265260-77265279 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTCTGTCTCATTC+TGG | - | chr1_1:77265393-77265412 | Msa0045350:intron | 30.0% |
| TGTATGACGTAAATTGATGT+TGG | - | chr1_1:77265477-77265496 | Msa0045350:intron | 30.0% | |
| !! | GATGTTGGTAATTTACACAA+CGG | - | chr1_1:77265492-77265511 | Msa0045350:intron | 30.0% |
| ATGAGAAAATGGGAGAAAAA+AGG | + | chr1_1:77265639-77265658 | None:intergenic | 30.0% | |
| ! | GTCCTATTATTTGAAATCTG+TGG | - | chr1_1:77265679-77265698 | Msa0045350:intron | 30.0% |
| !!! | ATAGACTTTTAGCTCATCTT+GGG | - | chr1_1:77265821-77265840 | Msa0045350:intron | 30.0% |
| !! | ATGTTTGTTCTTTAGTTTGG+TGG | - | chr1_1:77265879-77265898 | Msa0045350:intron | 30.0% |
| ! | TAAACTAGGCTTTGTAAACA+TGG | + | chr1_1:77265949-77265968 | None:intergenic | 30.0% |
| CTGATAGTTTACATACTGAA+TGG | - | chr1_1:77266143-77266162 | Msa0045350:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | chr1_1:77266145-77266164 | Msa0045350:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | chr1_1:77266180-77266199 | Msa0045350:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | chr1_1:77266181-77266200 | Msa0045350:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | chr1_1:77266216-77266235 | None:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | chr1_1:77266217-77266236 | None:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | chr1_1:77266217-77266236 | Msa0045350:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | chr1_1:77266219-77266238 | Msa0045350:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | chr1_1:77266350-77266369 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:77266557-77266576 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:77266558-77266577 | Msa0045350:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:77266886-77266905 | None:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | chr1_1:77266935-77266954 | Msa0045350:intron | 30.0% | |
| TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:77267118-77267137 | None:intergenic | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:77267156-77267175 | Msa0045350:intron | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:77267179-77267198 | Msa0045350:intron | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:77267180-77267199 | Msa0045350:intron | 30.0% | |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:77267480-77267499 | None:intergenic | 30.0% |
| !! | AATTCTAGAGTGATATACCA+AGG | + | chr1_1:77267516-77267535 | None:intergenic | 30.0% |
| ! | TTATTTCAAGTAGTTGGACT+AGG | - | chr1_1:77267661-77267680 | Msa0045350:intron | 30.0% |
| GATGTATGTGGTCTATAATA+TGG | + | chr1_1:77267898-77267917 | None:intergenic | 30.0% | |
| GATAACTTATGGTATTCGTT+TGG | - | chr1_1:77268170-77268189 | Msa0045350:intron | 30.0% | |
| GAGATTGTCAATATTCGTTT+AGG | - | chr1_1:77268416-77268435 | Msa0045350:intron | 30.0% | |
| ACTATTGATCAGGTATTTGA+AGG | - | chr1_1:77268725-77268744 | Msa0045350:intron | 30.0% | |
| CTCAATGAAATTTGGATTAC+AGG | - | chr1_1:77268914-77268933 | Msa0045350:intron | 30.0% | |
| TTATAAGTATAGCCAACCAT+CGG | + | chr1_1:77269012-77269031 | None:intergenic | 30.0% | |
| TTCTTTATCATTATCTGGGA+CGG | + | chr1_1:77269051-77269070 | None:intergenic | 30.0% | |
| TTGCATGTCATCTTGATTAA+TGG | - | chr1_1:77269137-77269156 | Msa0045350:intron | 30.0% | |
| ATACATGTAAACCTAGAAAC+TGG | - | chr1_1:77269243-77269262 | Msa0045350:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr1_1:77269363-77269382 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr1_1:77269364-77269383 | Msa0045350:intron | 30.0% |
| ! | AAGTAATACTTTGGAAGTAG+TGG | - | chr1_1:77269478-77269497 | Msa0045350:intron | 30.0% |
| AATCACGTAGTGATCTAAAT+GGG | + | chr1_1:77269910-77269929 | None:intergenic | 30.0% | |
| TAATCACGTAGTGATCTAAA+TGG | + | chr1_1:77269911-77269930 | None:intergenic | 30.0% | |
| ! | GTCAAATTTTCATACCAAGT+TGG | - | chr1_1:77269940-77269959 | Msa0045350:intron | 30.0% |
| AATCAATATTTGAGTAGGCT+TGG | + | chr1_1:77269984-77270003 | None:intergenic | 30.0% | |
| AATGAGAGTGATTAAGAGAT+AGG | - | chr1_1:77270614-77270633 | Msa0045350:intron | 30.0% | |
| ATGAGAGTGATTAAGAGATA+GGG | - | chr1_1:77270615-77270634 | Msa0045350:intron | 30.0% | |
| ! | ATATTTTTCTTGCACTACAG+CGG | - | chr1_1:77270741-77270760 | Msa0045350:intron | 30.0% |
| GAGATACTAAGATTCGTTTA+AGG | - | chr1_1:77270778-77270797 | Msa0045350:intron | 30.0% | |
| GATACTAAGATTCGTTTAAG+GGG | - | chr1_1:77270780-77270799 | Msa0045350:intron | 30.0% | |
| ! | TGCAACATAATTTGTGCTAT+TGG | + | chr1_1:77271041-77271060 | None:intergenic | 30.0% |
| TTTACAAAGTATACCGACAA+CGG | + | chr1_1:77271117-77271136 | None:intergenic | 30.0% | |
| AAAAAAAGAACTGCAACAGT+GGG | + | chr1_1:77271393-77271412 | None:intergenic | 30.0% | |
| ! | CAAGAAACTTAGAGTATCAA+TGG | + | chr1_1:77271695-77271714 | None:intergenic | 30.0% |
| !! | AATGGTTCTAATGGACAATA+AGG | + | chr1_1:77271888-77271907 | None:intergenic | 30.0% |
| !! | CTCTTTAGAAATGGTTCTAA+TGG | + | chr1_1:77271897-77271916 | None:intergenic | 30.0% |
| ! | AGAACCATTTCTAAAGAGAA+AGG | - | chr1_1:77271899-77271918 | Msa0045350:intron | 30.0% |
| ! | ACTTCCTTTCTCTTTAGAAA+TGG | + | chr1_1:77271906-77271925 | None:intergenic | 30.0% |
| ! | TTTCTAAAGAGAAAGGAAGT+TGG | - | chr1_1:77271906-77271925 | Msa0045350:intron | 30.0% |
| ATCTCTCTACTAAATCGAAA+TGG | + | chr1_1:77272029-77272048 | None:intergenic | 30.0% | |
| TTTAGTAGAGAGATACGAAA+AGG | - | chr1_1:77272035-77272054 | Msa0045350:intron | 30.0% | |
| !! | TGAAGAAAGTGTTGGTTAAT+AGG | - | chr1_1:77272103-77272122 | Msa0045350:intron | 30.0% |
| ATTAGCAAGGAACATGTTTA+AGG | - | chr1_1:77272449-77272468 | Msa0045350:intron | 30.0% | |
| AATGGTAGTATTATGGCTAT+TGG | + | chr1_1:77272573-77272592 | None:intergenic | 30.0% | |
| !!! | ATTTTTTGTTTCGGCTGATT+GGG | + | chr1_1:77272628-77272647 | None:intergenic | 30.0% |
| !!! | TATTTTTTGTTTCGGCTGAT+TGG | + | chr1_1:77272629-77272648 | None:intergenic | 30.0% |
| TAAAAAGGAAATATGCGTTC+AGG | + | chr1_1:77272845-77272864 | None:intergenic | 30.0% | |
| AAAAAAGGAAATATGCGTTC+AGG | + | chr1_1:77272905-77272924 | None:intergenic | 30.0% | |
| ATGCGTTCAGGAAAAAAAAA+AGG | + | chr1_1:77272920-77272939 | None:intergenic | 30.0% | |
| TAAATTTACGACCTGTTTCA+TGG | + | chr1_1:77273729-77273748 | None:intergenic | 30.0% | |
| TAGATATAGATTTGAGGGTT+AGG | - | chr1_1:77273756-77273775 | Msa0045350:intron | 30.0% | |
| AGGCTTATGGTAATCATTAA+AGG | + | chr1_1:77273790-77273809 | None:intergenic | 30.0% | |
| AATGATTACCATAAGCCTTT+AGG | - | chr1_1:77273792-77273811 | Msa0045350:intron | 30.0% | |
| ATGATTACCATAAGCCTTTA+GGG | - | chr1_1:77273793-77273812 | Msa0045350:intron | 30.0% | |
| TAGCATACATCAAGTGTATT+GGG | - | chr1_1:77273997-77274016 | Msa0045350:intron | 30.0% | |
| !! | AAAACTTCTGAAATATGTGG+GGG | - | chr1_1:77274138-77274157 | Msa0045350:intron | 30.0% |
| TGTGTCAAATGTATTTGACT+TGG | - | chr1_1:77274370-77274389 | Msa0045350:intron | 30.0% | |
| TATTTGTACATCTGTGTTTC+CGG | - | chr1_1:77274393-77274412 | Msa0045350:intron | 30.0% | |
| ! | TAATAAAAAGTTTGGTGAGG+TGG | + | chr1_1:77274521-77274540 | None:intergenic | 30.0% |
| GATCAAACGGTATCTTAAAT+AGG | + | chr1_1:77274608-77274627 | None:intergenic | 30.0% | |
| ! | ATTTAAGATACCGTTTGATC+CGG | - | chr1_1:77274608-77274627 | Msa0045350:intron | 30.0% |
| ! | AAGTAGCATTCAACAACTTT+TGG | + | chr1_1:77274754-77274773 | None:intergenic | 30.0% |
| AAAAAAACACCTGAGATCAA+AGG | + | chr1_1:77275891-77275910 | None:intergenic | 30.0% | |
| !! | GAGTTTGTTTTCAAGAAAGA+TGG | - | chr1_1:77275953-77275972 | Msa0045350:intron | 30.0% |
| AATGCATCAAATGCAAAAAC+AGG | + | chr1_1:77276025-77276044 | None:intergenic | 30.0% | |
| !! | GATGATTGAATTTTAGGTGA+TGG | - | chr1_1:77276095-77276114 | Msa0045350:intron | 30.0% |
| ! | TTGAAATTTAGCTTATGGTC+AGG | - | chr1_1:77276234-77276253 | Msa0045350:intron | 30.0% |
| ! | GATTTTGTGAGTATTCCTAA+AGG | - | chr1_1:77276354-77276373 | Msa0045350:intron | 30.0% |
| !!! | TTGTTTTGGTCATATCATTG+AGG | - | chr1_1:77276448-77276467 | Msa0045350:intron | 30.0% |
| TATAGGACTTTCAATGTCAA+AGG | - | chr1_1:77276620-77276639 | Msa0045350:intron | 30.0% | |
| GAGTGTATATTATTTGTGAC+TGG | - | chr1_1:77276660-77276679 | Msa0045350:intron | 30.0% | |
| GCTCATTATATGTGATACAA+AGG | - | chr1_1:77276707-77276726 | Msa0045350:intron | 30.0% | |
| TAAAAACAACCATAAAGGGA+TGG | + | chr1_1:77276974-77276993 | None:intergenic | 30.0% | |
| TTAACTAACATTCCTACTCA+TGG | - | chr1_1:77277026-77277045 | Msa0045350:intron | 30.0% | |
| !! | TTTTCTAATTTGTCAGCATC+AGG | - | chr1_1:77277286-77277305 | Msa0045350:intron | 30.0% |
| ! | CAGGTGATAGAATTTTGTAT+AGG | - | chr1_1:77277305-77277324 | Msa0045350:intron | 30.0% |
| ! | ATATGGTTGATGTAACACTA+TGG | - | chr1_1:77277370-77277389 | Msa0045350:intron | 30.0% |
| ! | TATGGTTGATGTAACACTAT+GGG | - | chr1_1:77277371-77277390 | Msa0045350:intron | 30.0% |
| AAGAACTCAAGGTAAATAGA+TGG | + | chr1_1:77277500-77277519 | None:intergenic | 30.0% | |
| AAATGGAAACAAAGAACTCA+AGG | + | chr1_1:77277511-77277530 | None:intergenic | 30.0% | |
| ! | TGTTTCCATTTTGTAGACAA+TGG | - | chr1_1:77277520-77277539 | Msa0045350:intron | 30.0% |
| TTAGATTCAAAGCTTCAATC+AGG | - | chr1_1:77277748-77277767 | Msa0045350:CDS | 30.0% | |
| TAGATTCAAAGCTTCAATCA+GGG | - | chr1_1:77277749-77277768 | Msa0045350:CDS | 30.0% | |
| TTTCCAATCTTTCTCAAGTT+AGG | - | chr1_1:77277807-77277826 | Msa0045350:CDS | 30.0% | |
| TGAATTTAGAGACTTAGTCA+AGG | - | chr1_1:77277838-77277857 | Msa0045350:intron | 30.0% | |
| CATACATACTGCATCATTAT+TGG | - | chr1_1:77277956-77277975 | Msa0045350:intron | 30.0% | |
| AAATTCAATCCTTACCAGTT+TGG | - | chr1_1:77277989-77278008 | Msa0045350:intron | 30.0% | |
| TATAATCTTCCTAAGAGCTT+GGG | + | chr1_1:77278297-77278316 | None:intergenic | 30.0% | |
| TCTTAGGAAGATTATACAAG+AGG | - | chr1_1:77278301-77278320 | Msa0045350:intron | 30.0% | |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:77264189-77264208 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:77264267-77264286 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:77264354-77264373 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:77264419-77264438 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:77264602-77264621 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:77264673-77264692 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:77264674-77264693 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:77264776-77264795 | Msa0045350:intron | 35.0% | |
| AACATTTAGCAAACAAGCAC+CGG | + | chr1_1:77264889-77264908 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAACTTG+TGG | - | chr1_1:77265138-77265157 | Msa0045350:intron | 35.0% | |
| !! | AGAAGCATTTGAATTTCGCA+GGG | + | chr1_1:77265232-77265251 | None:intergenic | 35.0% |
| !! | AAGAAGCATTTGAATTTCGC+AGG | + | chr1_1:77265233-77265252 | None:intergenic | 35.0% |
| ATTCAAATGCTTCTTCTCTC+CGG | - | chr1_1:77265238-77265257 | Msa0045350:intron | 35.0% | |
| ATTGTATGCTAGACACTTAG+GGG | + | chr1_1:77265308-77265327 | None:intergenic | 35.0% | |
| GATTGTATGCTAGACACTTA+GGG | + | chr1_1:77265309-77265328 | None:intergenic | 35.0% | |
| AGATTGTATGCTAGACACTT+AGG | + | chr1_1:77265310-77265329 | None:intergenic | 35.0% | |
| CGGTGAAGTCTAAGAAATAA+AGG | + | chr1_1:77265335-77265354 | None:intergenic | 35.0% | |
| !! | AGACTTCACCGATTCATATA+TGG | - | chr1_1:77265344-77265363 | Msa0045350:intron | 35.0% |
| !! | GTTAAGGAAATTTTGGTCTC+TGG | - | chr1_1:77265529-77265548 | Msa0045350:intron | 35.0% |
| TAGATATCAGTTGCTAAAGG+TGG | - | chr1_1:77265613-77265632 | Msa0045350:intron | 35.0% | |
| ! | TCTCCCATTTTCTCATATCT+AGG | - | chr1_1:77265643-77265662 | Msa0045350:intron | 35.0% |
| !!! | TGGGGCATATTCGTTTTTTT+GGG | + | chr1_1:77265740-77265759 | None:intergenic | 35.0% |
| !!! | ATGGGGCATATTCGTTTTTT+TGG | + | chr1_1:77265741-77265760 | None:intergenic | 35.0% |
| ! | TGATGATAATTTGTGGCGAA+AGG | + | chr1_1:77265770-77265789 | None:intergenic | 35.0% |
| !! | GCTGGTTTGATGATAATTTG+TGG | + | chr1_1:77265777-77265796 | None:intergenic | 35.0% |
| TCTATCCATGGTAAATGAGT+GGG | + | chr1_1:77265806-77265825 | None:intergenic | 35.0% | |
| ATGAGCTAAAAGTCTATCCA+TGG | + | chr1_1:77265818-77265837 | None:intergenic | 35.0% | |
| !!! | GATAGACTTTTAGCTCATCT+TGG | - | chr1_1:77265820-77265839 | Msa0045350:intron | 35.0% |
| !! | AGGCTTTGTAAACATGGTTT+TGG | + | chr1_1:77265943-77265962 | None:intergenic | 35.0% |
| ACAAAGCCTAGTTTACAACT+TGG | - | chr1_1:77265954-77265973 | Msa0045350:intron | 35.0% | |
| CAAAGCCTAGTTTACAACTT+GGG | - | chr1_1:77265955-77265974 | Msa0045350:intron | 35.0% | |
| TAGATCCCAAGTTGTAAACT+AGG | + | chr1_1:77265963-77265982 | None:intergenic | 35.0% | |
| GGGAAAGTGAAAGAGAAATA+GGG | + | chr1_1:77266100-77266119 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | chr1_1:77266101-77266120 | None:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | chr1_1:77266102-77266121 | Msa0045350:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:77267072-77267091 | Msa0045350:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:77267073-77267092 | Msa0045350:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:77267168-77267187 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:77267422-77267441 | Msa0045350:intron | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | chr1_1:77267496-77267515 | Msa0045350:intron | 35.0% | |
| CAAGTTAAATGTATGCAGCT+GGG | + | chr1_1:77267554-77267573 | None:intergenic | 35.0% | |
| TAATTTCATAGCACGTAGCT+GGG | + | chr1_1:77267610-77267629 | None:intergenic | 35.0% | |
| TTAATTTCATAGCACGTAGC+TGG | + | chr1_1:77267611-77267630 | None:intergenic | 35.0% | |
| ! | ATGTTGCTTACATTTGAGAC+CGG | + | chr1_1:77267836-77267855 | None:intergenic | 35.0% |
| !! | CAATCCGTGTTGATAACTTA+TGG | - | chr1_1:77268159-77268178 | Msa0045350:intron | 35.0% |
| ACTTTCTCAAGAATGACCAA+TGG | + | chr1_1:77268275-77268294 | None:intergenic | 35.0% | |
| GGTCATTCTTGAGAAAGTTA+AGG | - | chr1_1:77268277-77268296 | Msa0045350:intron | 35.0% | |
| ! | AGGTATTTGAAGGTACATCT+GGG | - | chr1_1:77268735-77268754 | Msa0045350:intron | 35.0% |
| TTTACGACCATACAGTTTAC+TGG | - | chr1_1:77268770-77268789 | Msa0045350:intron | 35.0% | |
| AAAACACATAATTGAGCCGA+TGG | - | chr1_1:77268993-77269012 | Msa0045350:intron | 35.0% | |
| ! | GAATTTAGCTTCCAGTTTCT+AGG | + | chr1_1:77269257-77269276 | None:intergenic | 35.0% |
| !! | GAGTGTTAATTTGTTCTGGA+GGG | - | chr1_1:77269619-77269638 | Msa0045350:intron | 35.0% |
| !! | AGTGTTAATTTGTTCTGGAG+GGG | - | chr1_1:77269620-77269639 | Msa0045350:intron | 35.0% |
| AATACTTGGCTAAATTGCAG+AGG | + | chr1_1:77269693-77269712 | None:intergenic | 35.0% | |
| GGCCAAGAAAACCAATTTAA+AGG | + | chr1_1:77269742-77269761 | None:intergenic | 35.0% | |
| !! | TTGGTGTTTTCTTACCAACT+TGG | + | chr1_1:77269957-77269976 | None:intergenic | 35.0% |
| TCTGCATAGCTTTCATTAGA+GGG | + | chr1_1:77270065-77270084 | None:intergenic | 35.0% | |
| ATCTGCATAGCTTTCATTAG+AGG | + | chr1_1:77270066-77270085 | None:intergenic | 35.0% | |
| GTTCAAGCTTCTCTTAAATG+AGG | + | chr1_1:77270270-77270289 | None:intergenic | 35.0% | |
| CATAAGAGAGGAATGAACTA+TGG | + | chr1_1:77270292-77270311 | None:intergenic | 35.0% | |
| CGAGATAGATAAGACCTAAA+AGG | - | chr1_1:77270456-77270475 | Msa0045350:intron | 35.0% | |
| TATGTTGCATGCAAAGAACT+TGG | - | chr1_1:77271052-77271071 | Msa0045350:intron | 35.0% | |
| AAAAAAGAACTGCAACAGTG+GGG | + | chr1_1:77271392-77271411 | None:intergenic | 35.0% | |
| CAAAAAAAGAACTGCAACAG+TGG | + | chr1_1:77271394-77271413 | None:intergenic | 35.0% | |
| !!! | CACTGTTGCAGTTCTTTTTT+TGG | - | chr1_1:77271392-77271411 | Msa0045350:intron | 35.0% |
| TCTAAGTTTCTTGATGCGAA+TGG | - | chr1_1:77271702-77271721 | Msa0045350:intron | 35.0% | |
| CTAAGTTTCTTGATGCGAAT+GGG | - | chr1_1:77271703-77271722 | Msa0045350:intron | 35.0% | |
| ATATCGGAAACGAATTCGAT+TGG | - | chr1_1:77271728-77271747 | Msa0045350:intron | 35.0% | |
| TCAGAGATCAAGTCAATCTT+TGG | - | chr1_1:77272002-77272021 | Msa0045350:intron | 35.0% | |
| CAGAGATCAAGTCAATCTTT+GGG | - | chr1_1:77272003-77272022 | Msa0045350:intron | 35.0% | |
| AATAGAAAGAGAAGGAGTTG+TGG | - | chr1_1:77272078-77272097 | Msa0045350:intron | 35.0% | |
| GACATGAGATCGAATTTGAT+TGG | + | chr1_1:77272186-77272205 | None:intergenic | 35.0% | |
| GTTCTTAATGGTGATTAGCA+AGG | - | chr1_1:77272436-77272455 | Msa0045350:intron | 35.0% | |
| AAAATCAGGAATATGCGTTC+AGG | + | chr1_1:77272932-77272951 | None:intergenic | 35.0% | |
| CAAATTTGTGAGGATGAATG+TGG | - | chr1_1:77273595-77273614 | Msa0045350:intron | 35.0% | |
| ATACACTTGATGTATGCTAG+AGG | + | chr1_1:77273996-77274015 | None:intergenic | 35.0% | |
| CTAGCATACATCAAGTGTAT+TGG | - | chr1_1:77273996-77274015 | Msa0045350:intron | 35.0% | |
| GTGTTAAGCCTCATTAATCT+AGG | - | chr1_1:77274049-77274068 | Msa0045350:intron | 35.0% | |
| GGCAAAAATGGAAATTCATG+AGG | + | chr1_1:77274448-77274467 | None:intergenic | 35.0% | |
| !! | TTCCATTTTTGCCCTCATTA+AGG | - | chr1_1:77274455-77274474 | Msa0045350:intron | 35.0% |
| !! | TCCATTTTTGCCCTCATTAA+GGG | - | chr1_1:77274456-77274475 | Msa0045350:intron | 35.0% |
| TGAGAAAAAACCGGATCAAA+CGG | + | chr1_1:77274621-77274640 | None:intergenic | 35.0% | |
| ATATTTGCGAGGTTGAAGAA+AGG | + | chr1_1:77275061-77275080 | None:intergenic | 35.0% | |
| TGTGAGTGTATATATTTGCG+AGG | + | chr1_1:77275072-77275091 | None:intergenic | 35.0% | |
| TGAGCTTAGCTCAATTGATA+GGG | - | chr1_1:77275659-77275678 | Msa0045350:intron | 35.0% | |
| GACCTTTGATATATGTTGCA+TGG | - | chr1_1:77275850-77275869 | Msa0045350:intron | 35.0% | |
| AGCCATGCAACATATATCAA+AGG | + | chr1_1:77275855-77275874 | None:intergenic | 35.0% | |
| AAAAATCCTCCTTTGATCTC+AGG | - | chr1_1:77275879-77275898 | Msa0045350:intron | 35.0% | |
| TCTAGATAAATGCATGCATG+TGG | - | chr1_1:77276055-77276074 | Msa0045350:intron | 35.0% | |
| CTAGATAAATGCATGCATGT+GGG | - | chr1_1:77276056-77276075 | Msa0045350:intron | 35.0% | |
| TCTAGATAAATGCATGCATG+TGG | - | chr1_1:77276055-77276074 | Msa0045350:intron | 35.0% | |
| ! | ATGCATGTGGATTATAGTAG+AGG | - | chr1_1:77276202-77276221 | Msa0045350:intron | 35.0% |
| TACACCAATCAACTTTCGTA+CGG | + | chr1_1:77276425-77276444 | None:intergenic | 35.0% | |
| TTGGTTTCTTTCTCGGATTT+AGG | - | chr1_1:77276818-77276837 | Msa0045350:intron | 35.0% | |
| GATATAGAGAATTGGAGCAT+TGG | - | chr1_1:77276865-77276884 | Msa0045350:intron | 35.0% | |
| TTAACGTGAAATCCATGAGT+AGG | + | chr1_1:77277041-77277060 | None:intergenic | 35.0% | |
| ATTGTCAAGACAACGACAAT+TGG | - | chr1_1:77277212-77277231 | Msa0045350:intron | 35.0% | |
| TTGTCAAGACAACGACAATT+GGG | - | chr1_1:77277213-77277232 | Msa0045350:intron | 35.0% | |
| CTCAATACAATGTTCGTACA+TGG | + | chr1_1:77277251-77277270 | None:intergenic | 35.0% | |
| CATAAGCAAAGACATCTTTC+AGG | + | chr1_1:77277342-77277361 | None:intergenic | 35.0% | |
| !!! | CGAATTTTTTGCTGATCGAA+AGG | - | chr1_1:77277415-77277434 | Msa0045350:intron | 35.0% |
| GCTTTCCATTGTCTACAAAA+TGG | + | chr1_1:77277528-77277547 | None:intergenic | 35.0% | |
| CGACAACTATTCAAGAAACA+TGG | + | chr1_1:77277707-77277726 | None:intergenic | 35.0% | |
| !! | TCTAAGCTTGAGAAGTGTTA+AGG | + | chr1_1:77277733-77277752 | None:intergenic | 35.0% |
| TGACCTAACTTGAGAAAGAT+TGG | + | chr1_1:77277813-77277832 | None:intergenic | 35.0% | |
| TAATACCATCCAAACTGGTA+AGG | + | chr1_1:77278001-77278020 | None:intergenic | 35.0% | |
| TCTCATAATACCATCCAAAC+TGG | + | chr1_1:77278006-77278025 | None:intergenic | 35.0% | |
| CTTTGATGCCTTTGAACATT+TGG | + | chr1_1:77278035-77278054 | None:intergenic | 35.0% | |
| !! | TCAAAGGCATCAAAGTCAAA+TGG | - | chr1_1:77278040-77278059 | Msa0045350:intron | 35.0% |
| GATAGCTATAGATGTACATG+CGG | - | chr1_1:77278064-77278083 | Msa0045350:intron | 35.0% | |
| ATAGCTATAGATGTACATGC+GGG | - | chr1_1:77278065-77278084 | Msa0045350:intron | 35.0% | |
| !! | TGGATTAGTGCTTCTTTCTT+TGG | - | chr1_1:77278139-77278158 | Msa0045350:intron | 35.0% |
| ! | AGTGAATGTCTTCAGGTTAT+TGG | - | chr1_1:77278263-77278282 | Msa0045350:intron | 35.0% |
| GTATAATCTTCCTAAGAGCT+TGG | + | chr1_1:77278298-77278317 | None:intergenic | 35.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:77264286-77264305 | Msa0045350:intron | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:77264295-77264314 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:77264380-77264399 | Msa0045350:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:77264394-77264413 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:77264555-77264574 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:77264556-77264575 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGAATAGCTCCCTC+CGG | - | chr1_1:77264867-77264886 | Msa0045350:intron | 40.0% |
| !! | TGCCACATTTGAGCTGATTT+TGG | - | chr1_1:77265023-77265042 | Msa0045350:intron | 40.0% |
| CACCAAAATCAGCTCAAATG+TGG | + | chr1_1:77265028-77265047 | None:intergenic | 40.0% | |
| CTGGATTGTAACATGAGGAA+AGG | - | chr1_1:77265548-77265567 | Msa0045350:intron | 40.0% | |
| !! | GAGGAAAGGAGAAGCATTAT+AGG | - | chr1_1:77265562-77265581 | Msa0045350:intron | 40.0% |
| !!! | GGCATATTCGTTTTTTTGGG+TGG | + | chr1_1:77265737-77265756 | None:intergenic | 40.0% |
| ! | GATAATTTGTGGCGAAAGGT+TGG | + | chr1_1:77265766-77265785 | None:intergenic | 40.0% |
| GTCTATCCATGGTAAATGAG+TGG | + | chr1_1:77265807-77265826 | None:intergenic | 40.0% | |
| ATGCCCCATCAAAATTTAGC+AGG | + | chr1_1:77266225-77266244 | None:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | chr1_1:77266226-77266245 | Msa0045350:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | chr1_1:77266317-77266336 | None:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | chr1_1:77266324-77266343 | Msa0045350:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | chr1_1:77266468-77266487 | None:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:77266549-77266568 | None:intergenic | 40.0% | |
| GTTGCTAAAGTAAGAGGGTT+TGG | - | chr1_1:77267078-77267097 | Msa0045350:intron | 40.0% | |
| TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:77267331-77267350 | Msa0045350:intron | 40.0% | |
| CCAAGTTAAATGTATGCAGC+TGG | + | chr1_1:77267555-77267574 | None:intergenic | 40.0% | |
| CCAGCTGCATACATTTAACT+TGG | - | chr1_1:77267552-77267571 | Msa0045350:intron | 40.0% | |
| ACAGAATACATGACTGTGTC+TGG | - | chr1_1:77268239-77268258 | Msa0045350:intron | 40.0% | |
| TAACTTCGGTCAACTGCATT+AGG | - | chr1_1:77268379-77268398 | Msa0045350:intron | 40.0% | |
| AACTTCGGTCAACTGCATTA+GGG | - | chr1_1:77268380-77268399 | Msa0045350:intron | 40.0% | |
| GTCAATATTCGTTTAGGCGA+TGG | - | chr1_1:77268422-77268441 | Msa0045350:intron | 40.0% | |
| ! | GTCAGAAGCTCAGAACATTT+TGG | + | chr1_1:77268563-77268582 | None:intergenic | 40.0% |
| AATAAAGCAGACAACGATGG+AGG | + | chr1_1:77268606-77268625 | None:intergenic | 40.0% | |
| GTGAATAAAGCAGACAACGA+TGG | + | chr1_1:77268609-77268628 | None:intergenic | 40.0% | |
| ! | CAGGTATTTGAAGGTACATC+TGG | - | chr1_1:77268734-77268753 | Msa0045350:intron | 40.0% |
| TACCTCTCCAGTAAACTGTA+TGG | + | chr1_1:77268780-77268799 | None:intergenic | 40.0% | |
| ! | TATCATTATCTGGGACGGTT+TGG | + | chr1_1:77269046-77269065 | None:intergenic | 40.0% |
| GCTTAGGTGATAGTTACGAT+TGG | + | chr1_1:77269080-77269099 | None:intergenic | 40.0% | |
| TTCTGCTTAGAAAAAAGGGG+AGG | - | chr1_1:77269274-77269293 | Msa0045350:intron | 40.0% | |
| GAGGGAGTAGAATAGTAATC+AGG | + | chr1_1:77269341-77269360 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_1:77269359-77269378 | None:intergenic | 40.0% |
| GTAGTGGTGCAGAGTATAAT+TGG | - | chr1_1:77269494-77269513 | Msa0045350:intron | 40.0% | |
| TGGTGCAGAGTATAATTGGA+GGG | - | chr1_1:77269498-77269517 | Msa0045350:intron | 40.0% | |
| !! | GAGGGAGTGTTAATTTGTTC+TGG | - | chr1_1:77269615-77269634 | Msa0045350:intron | 40.0% |
| !! | GGAGTGTTAATTTGTTCTGG+AGG | - | chr1_1:77269618-77269637 | Msa0045350:intron | 40.0% |
| !! | GTGTTAATTTGTTCTGGAGG+GGG | - | chr1_1:77269621-77269640 | Msa0045350:intron | 40.0% |
| ! | GTTGGTAAGAAAACACCAAG+AGG | - | chr1_1:77269958-77269977 | Msa0045350:intron | 40.0% |
| ! | TGCTTGATTTTTGTGTGTGC+TGG | + | chr1_1:77270496-77270515 | None:intergenic | 40.0% |
| !! | AAATTACATGTCGCTTTGCG+AGG | + | chr1_1:77271170-77271189 | None:intergenic | 40.0% |
| TCGCAAAGCGACATGTAATT+TGG | - | chr1_1:77271169-77271188 | Msa0045350:intron | 40.0% | |
| CGCAAAGCGACATGTAATTT+GGG | - | chr1_1:77271170-77271189 | Msa0045350:intron | 40.0% | |
| GCAAAGCGACATGTAATTTG+GGG | - | chr1_1:77271171-77271190 | Msa0045350:intron | 40.0% | |
| ! | TTGTATTAGCGGGCATATTC+TGG | + | chr1_1:77271342-77271361 | None:intergenic | 40.0% |
| ! | AACAGAGGGCTTTGTATTAG+CGG | + | chr1_1:77271353-77271372 | None:intergenic | 40.0% |
| ! | ACAAAGCCCTCTGTTCTTTT+TGG | - | chr1_1:77271358-77271377 | Msa0045350:intron | 40.0% |
| GCTGATCCAAAAAGAACAGA+GGG | + | chr1_1:77271367-77271386 | None:intergenic | 40.0% | |
| AGCTGATCCAAAAAGAACAG+AGG | + | chr1_1:77271368-77271387 | None:intergenic | 40.0% | |
| AAAAAGAACTGCAACAGTGG+GGG | + | chr1_1:77271391-77271410 | None:intergenic | 40.0% | |
| GAGTATCAATGGTCGAATCA+TGG | + | chr1_1:77271684-77271703 | None:intergenic | 40.0% | |
| TTGATGCGAATGGGAGATAT+CGG | - | chr1_1:77271712-77271731 | Msa0045350:intron | 40.0% | |
| TCATATCCCTCACAAACCAA+AGG | - | chr1_1:77271936-77271955 | Msa0045350:intron | 40.0% | |
| ! | TTGTGGTGTGAAGAAAGTGT+TGG | - | chr1_1:77272095-77272114 | Msa0045350:intron | 40.0% |
| ! | TTGATTGGTCGAGTTAAGTG+TGG | + | chr1_1:77272171-77272190 | None:intergenic | 40.0% |
| ! | TGGCTCGGATTGTAAAGAAA+AGG | - | chr1_1:77272320-77272339 | Msa0045350:intron | 40.0% |
| !!! | TGTGGTGAGAGTATTTTGTG+AGG | - | chr1_1:77273613-77273632 | Msa0045350:intron | 40.0% |
| ! | ATTACCATAAGCCTTTAGGG+TGG | - | chr1_1:77273796-77273815 | Msa0045350:intron | 40.0% |
| TCACCTATATGAGTGTCAAG+CGG | - | chr1_1:77273848-77273867 | Msa0045350:CDS | 40.0% | |
| AATCGCTGTGTTACGCATTT+AGG | + | chr1_1:77273937-77273956 | None:intergenic | 40.0% | |
| AGGCTTAACACACAGTGAAT+TGG | + | chr1_1:77274040-77274059 | None:intergenic | 40.0% | |
| GAACTCGTCCTAGATTAATG+AGG | + | chr1_1:77274060-77274079 | None:intergenic | 40.0% | |
| TTGAGTGTAATGCATCGGAA+CGG | + | chr1_1:77274090-77274109 | None:intergenic | 40.0% | |
| CAACCTTGAGTGTAATGCAT+CGG | + | chr1_1:77274095-77274114 | None:intergenic | 40.0% | |
| CATTACACTCAAGGTTGACT+CGG | - | chr1_1:77274098-77274117 | Msa0045350:intron | 40.0% | |
| GACCAAATTGCCCTTAATGA+GGG | + | chr1_1:77274469-77274488 | None:intergenic | 40.0% | |
| TGACCAAATTGCCCTTAATG+AGG | + | chr1_1:77274470-77274489 | None:intergenic | 40.0% | |
| GGTATCTTAAATAGGCCAAC+TGG | + | chr1_1:77274600-77274619 | None:intergenic | 40.0% | |
| GTGAGCTTAGCTCAATTGAT+AGG | - | chr1_1:77275658-77275677 | Msa0045350:intron | 40.0% | |
| AAAACACCTGAGATCAAAGG+AGG | + | chr1_1:77275888-77275907 | None:intergenic | 40.0% | |
| ! | TTCTGATACAAAGGTGCAGA+AGG | - | chr1_1:77276995-77277014 | Msa0045350:intron | 40.0% |
| ! | TCTGATACAAAGGTGCAGAA+GGG | - | chr1_1:77276996-77277015 | Msa0045350:intron | 40.0% |
| AGATGTCTTTGCTTATGCAG+TGG | - | chr1_1:77277345-77277364 | Msa0045350:intron | 40.0% | |
| GATGTCTTTGCTTATGCAGT+GGG | - | chr1_1:77277346-77277365 | Msa0045350:intron | 40.0% | |
| TTGCTTATGCAGTGGGAATA+TGG | - | chr1_1:77277353-77277372 | Msa0045350:intron | 40.0% | |
| TTTGCTGATCGAAAGGATGT+AGG | - | chr1_1:77277422-77277441 | Msa0045350:intron | 40.0% | |
| TTGCTGATCGAAAGGATGTA+GGG | - | chr1_1:77277423-77277442 | Msa0045350:intron | 40.0% | |
| TCAAAGCTTCAATCAGGGTT+TGG | - | chr1_1:77277754-77277773 | Msa0045350:CDS | 40.0% | |
| TCAATCCTTACCAGTTTGGA+TGG | - | chr1_1:77277993-77278012 | Msa0045350:intron | 40.0% | |
| ! | ATGTTGATGCTCCATTGACT+AGG | - | chr1_1:77278092-77278111 | Msa0045350:intron | 40.0% |
| GTTGTGCAAGTTGTTCATGA+TGG | - | chr1_1:77278212-77278231 | Msa0045350:intron | 40.0% | |
| TTGGGATAGTGAATGTCTTC+AGG | - | chr1_1:77278256-77278275 | Msa0045350:intron | 40.0% | |
| TCCTTTGGCTGAATTTCATC+GGG | + | chr1_1:77278479-77278498 | None:intergenic | 40.0% | |
| CTCCTTTGGCTGAATTTCAT+CGG | + | chr1_1:77278480-77278499 | None:intergenic | 40.0% | |
| ! | TCATCAAGTTGTTGCTCCTT+TGG | + | chr1_1:77278494-77278513 | None:intergenic | 40.0% |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:77264115-77264134 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:77264175-77264194 | Msa0045350:intron | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:77264218-77264237 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:77264401-77264420 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:77264508-77264527 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:77264518-77264537 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:77264527-77264546 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:77264546-77264565 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:77264580-77264599 | Msa0045350:intron | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:77264808-77264827 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:77264809-77264828 | None:intergenic | 45.0% | |
| !! | TTTAGCAAACAAGCACCGGA+GGG | + | chr1_1:77264885-77264904 | None:intergenic | 45.0% |
| !! | ATTTAGCAAACAAGCACCGG+AGG | + | chr1_1:77264886-77264905 | None:intergenic | 45.0% |
| !! | TCGATTTGGGGCTTGTGTTA+TGG | + | chr1_1:77265092-77265111 | None:intergenic | 45.0% |
| GGTCTCTGGATTGTAACATG+AGG | - | chr1_1:77265543-77265562 | Msa0045350:intron | 45.0% | |
| TCCATGGTAAATGAGTGGGT+GGG | + | chr1_1:77265802-77265821 | None:intergenic | 45.0% | |
| ATCCATGGTAAATGAGTGGG+TGG | + | chr1_1:77265803-77265822 | None:intergenic | 45.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | chr1_1:77266229-77266248 | Msa0045350:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | chr1_1:77266230-77266249 | Msa0045350:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | chr1_1:77266340-77266359 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:77266550-77266569 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | chr1_1:77266604-77266623 | None:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | chr1_1:77266601-77266620 | Msa0045350:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:77266608-77266627 | Msa0045350:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr1_1:77266801-77266820 | None:intergenic | 45.0% | |
| ! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:77267016-77267035 | None:intergenic | 45.0% |
| ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:77267200-77267219 | None:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:77267454-77267473 | None:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:77267451-77267470 | Msa0045350:intron | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:77267454-77267473 | Msa0045350:intron | 45.0% |
| ! | TGCTTACATTTGAGACCGGA+GGG | + | chr1_1:77267832-77267851 | None:intergenic | 45.0% |
| ! | TTGCTTACATTTGAGACCGG+AGG | + | chr1_1:77267833-77267852 | None:intergenic | 45.0% |
| TGGTTTCTCACATACTCCCT+CGG | + | chr1_1:77267968-77267987 | None:intergenic | 45.0% | |
| ! | AGGGAGTATGTGAGAAACCA+GGG | - | chr1_1:77267968-77267987 | Msa0045350:intron | 45.0% |
| ! | ATGACTGTGTCTGGAGTTAC+CGG | - | chr1_1:77268248-77268267 | Msa0045350:intron | 45.0% |
| CTCAAGAATGACCAATGGTC+CGG | + | chr1_1:77268270-77268289 | None:intergenic | 45.0% | |
| GGACAAGTTCTCGAGATTGA+TGG | - | chr1_1:77268458-77268477 | Msa0045350:intron | 45.0% | |
| !! | TCTCGAGATTGATGGCGAAA+AGG | - | chr1_1:77268466-77268485 | Msa0045350:intron | 45.0% |
| GACCATACAGTTTACTGGAG+AGG | - | chr1_1:77268775-77268794 | Msa0045350:intron | 45.0% | |
| CACATAATTGAGCCGATGGT+TGG | - | chr1_1:77268997-77269016 | Msa0045350:intron | 45.0% | |
| !! | ATTATCTGGGACGGTTTGGT+AGG | + | chr1_1:77269042-77269061 | None:intergenic | 45.0% |
| !! | ACAGCAGTTTTGGCATGCTT+AGG | + | chr1_1:77269096-77269115 | None:intergenic | 45.0% |
| ACATGCAACACACAGTCTGA+CGG | + | chr1_1:77269125-77269144 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_1:77269360-77269379 | None:intergenic | 45.0% |
| GTGGTGCAGAGTATAATTGG+AGG | - | chr1_1:77269497-77269516 | Msa0045350:intron | 45.0% | |
| !! | AGCGACACTCTTTGAAACAG+AGG | - | chr1_1:77269596-77269615 | Msa0045350:intron | 45.0% |
| !! | GCGACACTCTTTGAAACAGA+GGG | - | chr1_1:77269597-77269616 | Msa0045350:intron | 45.0% |
| ATTGCAGAGGAACGTAGGAT+GGG | + | chr1_1:77269680-77269699 | None:intergenic | 45.0% | |
| AATTGCAGAGGAACGTAGGA+TGG | + | chr1_1:77269681-77269700 | None:intergenic | 45.0% | |
| GCTAAATTGCAGAGGAACGT+AGG | + | chr1_1:77269685-77269704 | None:intergenic | 45.0% | |
| TGTTTCAACGCCTCGCTTAA+CGG | + | chr1_1:77270568-77270587 | None:intergenic | 45.0% | |
| GAATCGGAGTTATCCGTTGT+CGG | - | chr1_1:77271101-77271120 | Msa0045350:intron | 45.0% | |
| ! | TATTAGCGGGCATATTCTGG+CGG | + | chr1_1:77271339-77271358 | None:intergenic | 45.0% |
| ! | ACAGAGGGCTTTGTATTAGC+GGG | + | chr1_1:77271352-77271371 | None:intergenic | 45.0% |
| GCGTTCAGGAATATGAGTTC+AGG | + | chr1_1:77272891-77272910 | None:intergenic | 45.0% | |
| GTGCCACGTGTCATAAGAAT+AGG | - | chr1_1:77273677-77273696 | Msa0045350:intron | 45.0% | |
| CCTCCTATTCTTATGACACG+TGG | + | chr1_1:77273683-77273702 | None:intergenic | 45.0% | |
| CCACGTGTCATAAGAATAGG+AGG | - | chr1_1:77273680-77273699 | Msa0045350:intron | 45.0% | |
| TCCATAAAGGGCCATGAAAC+AGG | - | chr1_1:77273715-77273734 | Msa0045350:intron | 45.0% | |
| ACCTGTTTCATGGCCCTTTA+TGG | + | chr1_1:77273719-77273738 | None:intergenic | 45.0% | |
| TGGTTGTAGCATGCACTAGA+TGG | - | chr1_1:77273823-77273842 | Msa0045350:intron | 45.0% | |
| CACCTATATGAGTGTCAAGC+GGG | - | chr1_1:77273849-77273868 | Msa0045350:CDS | 45.0% | |
| ACCTATATGAGTGTCAAGCG+GGG | - | chr1_1:77273850-77273869 | Msa0045350:CDS | 45.0% | |
| TGTTACGCATTTAGGTCGTG+CGG | + | chr1_1:77273929-77273948 | None:intergenic | 45.0% | |
| CAGCGATTACACGAGAATTG+TGG | - | chr1_1:77273949-77273968 | Msa0045350:intron | 45.0% | |
| CGATTACACGAGAATTGTGG+CGG | - | chr1_1:77273952-77273971 | Msa0045350:intron | 45.0% | |
| AATGCATCGGAACGGTGTAA+TGG | + | chr1_1:77274082-77274101 | None:intergenic | 45.0% | |
| GTTCCGATGCATTACACTCA+AGG | - | chr1_1:77274089-77274108 | Msa0045350:intron | 45.0% | |
| GCCCTTAATGAGGGCAAAAA+TGG | + | chr1_1:77274460-77274479 | None:intergenic | 45.0% | |
| TGCCCTCATTAAGGGCAATT+TGG | - | chr1_1:77274464-77274483 | Msa0045350:intron | 45.0% | |
| TCAATTGAGCTAAGCTCACG+AGG | + | chr1_1:77275657-77275676 | None:intergenic | 45.0% | |
| ! | TGAGCCGTACGAAAGTTGAT+TGG | - | chr1_1:77276418-77276437 | Msa0045350:intron | 45.0% |
| ! | GCATTGGAAAGCTTTGATCG+AGG | - | chr1_1:77276881-77276900 | Msa0045350:intron | 45.0% |
| GCATGTTGACCATCCCTTTA+TGG | - | chr1_1:77276962-77276981 | Msa0045350:intron | 45.0% | |
| AAGACAACGACAATTGGGAC+TGG | - | chr1_1:77277218-77277237 | Msa0045350:intron | 45.0% | |
| GTAACAATTGGTCAGGTTCG+AGG | - | chr1_1:77277557-77277576 | Msa0045350:intron | 45.0% | |
| GCTCATCAACCTACATCACT+CGG | - | chr1_1:77277582-77277601 | Msa0045350:intron | 45.0% | |
| TCTCAACAACCGAGTGATGT+AGG | + | chr1_1:77277594-77277613 | None:intergenic | 45.0% | |
| GAGCTGCACCAAATGTTCAA+AGG | - | chr1_1:77278024-77278043 | Msa0045350:intron | 45.0% | |
| GTATTACTGCCCAAGCTCTT+AGG | - | chr1_1:77278285-77278304 | Msa0045350:intron | 45.0% | |
| TGACACGTAACGCAAACTCA+AGG | + | chr1_1:77278370-77278389 | None:intergenic | 45.0% | |
| !! | AAAATTAAAAAATAAACAAA+AGG | + | chr1_1:77265441-77265460 | None:intergenic | 5.0% |
| !! | TAAAAAATCAATTAAATAAA+TGG | - | chr1_1:77270938-77270957 | Msa0045350:intron | 5.0% |
| !! | AAAAAATCAATTAAATAAAT+GGG | - | chr1_1:77270939-77270958 | Msa0045350:intron | 5.0% |
| !!! | ATTTTAAATTTCATTTTTTT+TGG | - | chr1_1:77271204-77271223 | Msa0045350:intron | 5.0% |
| !!! | ATATCTATTAATTTTTTTTT+CGG | + | chr1_1:77272277-77272296 | None:intergenic | 5.0% |
| !!! | TTATAATATATTTTTTGTTT+CGG | + | chr1_1:77272637-77272656 | None:intergenic | 5.0% |
| !! | TAAAATAATTTAATTAGATT+TGG | + | chr1_1:77273260-77273279 | None:intergenic | 5.0% |
| !! | AAAATATTTAATAAAAAGTT+TGG | + | chr1_1:77274529-77274548 | None:intergenic | 5.0% |
| !!! | TATTTTTTTAAATATCTTAT+AGG | - | chr1_1:77274565-77274584 | Msa0045350:intron | 5.0% |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:77264114-77264133 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:77264431-77264450 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:77264467-77264486 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:77264478-77264497 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:77264479-77264498 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:77264509-77264528 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:77264512-77264531 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:77264791-77264810 | Msa0045350:intron | 50.0% |
| TGTGGCGAAAGGTTGGAGAT+GGG | + | chr1_1:77265759-77265778 | None:intergenic | 50.0% | |
| TTGTGGCGAAAGGTTGGAGA+TGG | + | chr1_1:77265760-77265779 | None:intergenic | 50.0% | |
| CCATGGTAAATGAGTGGGTG+GGG | + | chr1_1:77265801-77265820 | None:intergenic | 50.0% | |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | chr1_1:77266599-77266618 | None:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:77266783-77266802 | Msa0045350:intron | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:77267436-77267455 | Msa0045350:intron | 50.0% |
| ! | TTGCCTACATTTGAGACCCG+AGG | - | chr1_1:77267948-77267967 | Msa0045350:intron | 50.0% |
| ! | TGCCTACATTTGAGACCCGA+GGG | - | chr1_1:77267949-77267968 | Msa0045350:intron | 50.0% |
| GGTTTCTCACATACTCCCTC+GGG | + | chr1_1:77267967-77267986 | None:intergenic | 50.0% | |
| ! | GAGGGAGTATGTGAGAAACC+AGG | - | chr1_1:77267967-77267986 | Msa0045350:intron | 50.0% |
| GTTTAGGCGATGGAACTACC+CGG | - | chr1_1:77268432-77268451 | Msa0045350:intron | 50.0% | |
| TCTCGAGAACTTGTCCATGC+CGG | + | chr1_1:77268454-77268473 | None:intergenic | 50.0% | |
| TGGCGAAAAGGCTGTTGTTC+AGG | - | chr1_1:77268478-77268497 | Msa0045350:intron | 50.0% | |
| ! | ACGGGGGATAACAGCAGTTT+TGG | + | chr1_1:77269106-77269125 | None:intergenic | 50.0% |
| ATGCAACACACAGTCTGACG+GGG | + | chr1_1:77269123-77269142 | None:intergenic | 50.0% | |
| CATGCAACACACAGTCTGAC+GGG | + | chr1_1:77269124-77269143 | None:intergenic | 50.0% | |
| ! | TTCTGGAGGGGGAATTTCTC+AGG | - | chr1_1:77269632-77269651 | Msa0045350:intron | 50.0% |
| TTTGAGTAGGCTTGGCCTCT+TGG | + | chr1_1:77269976-77269995 | None:intergenic | 50.0% | |
| AGTGCTATCACCGTTAAGCG+AGG | - | chr1_1:77270555-77270574 | Msa0045350:intron | 50.0% | |
| !! | CGTTCGCCTTTGGTTTGTGA+GGG | + | chr1_1:77271945-77271964 | None:intergenic | 50.0% |
| !! | TCGTTCGCCTTTGGTTTGTG+AGG | + | chr1_1:77271946-77271965 | None:intergenic | 50.0% |
| CACACCACCCTAAAGGCTTA+TGG | + | chr1_1:77273803-77273822 | None:intergenic | 50.0% | |
| !! | TAAGCCTTTAGGGTGGTGTG+TGG | - | chr1_1:77273803-77273822 | Msa0045350:intron | 50.0% |
| ACAACCACACACCACCCTAA+AGG | + | chr1_1:77273810-77273829 | None:intergenic | 50.0% | |
| CTGTCACAGTCTCATGCAAG+CGG | + | chr1_1:77273876-77273895 | None:intergenic | 50.0% | |
| GTTACGCATTTAGGTCGTGC+GGG | + | chr1_1:77273928-77273947 | None:intergenic | 50.0% | |
| CTTAAATAGGCCAACTGGCG+AGG | + | chr1_1:77274595-77274614 | None:intergenic | 50.0% | |
| TTCCAGCGTGACATGAAGAG+AGG | + | chr1_1:77274813-77274832 | None:intergenic | 50.0% | |
| GCCCGATGAAATTCAGCCAA+AGG | - | chr1_1:77278475-77278494 | Msa0045350:intron | 50.0% | |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:77264432-77264451 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:77264464-77264483 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:77264489-77264508 | None:intergenic | 55.0% | |
| GTGGCGAAAGGTTGGAGATG+GGG | + | chr1_1:77265758-77265777 | None:intergenic | 55.0% | |
| TAAATGAGTGGGTGGGGAGC+TGG | + | chr1_1:77265795-77265814 | None:intergenic | 55.0% | |
| CCCCACCCACTCATTTACCA+TGG | - | chr1_1:77265798-77265817 | Msa0045350:intron | 55.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | chr1_1:77266766-77266785 | Msa0045350:intron | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:77266782-77266801 | Msa0045350:intron | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:77266790-77266809 | Msa0045350:intron | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:77266791-77266810 | Msa0045350:intron | 55.0% |
| ATGCAGCTGGGAACACGTTC+AGG | + | chr1_1:77267542-77267561 | None:intergenic | 55.0% | |
| CTCCCTCGGGTCTCAAATGT+AGG | + | chr1_1:77267954-77267973 | None:intergenic | 55.0% | |
| ! | GTCTGGAGTTACCGGACCAT+TGG | - | chr1_1:77268256-77268275 | Msa0045350:intron | 55.0% |
| CTCGAGAACTTGTCCATGCC+GGG | + | chr1_1:77268453-77268472 | None:intergenic | 55.0% | |
| TGCAACACACAGTCTGACGG+GGG | + | chr1_1:77269122-77269141 | None:intergenic | 55.0% | |
| !! | CATGTCGCTTTGCGAGGCAA+CGG | + | chr1_1:77271164-77271183 | None:intergenic | 55.0% |
| GCCCCGCTTGACACTCATAT+AGG | + | chr1_1:77273854-77273873 | None:intergenic | 55.0% | |
| CGCTTGCATGAGACTGTGAC+AGG | - | chr1_1:77273874-77273893 | Msa0045350:CDS | 55.0% | |
| ATTTAGGTCGTGCGGGTGTC+TGG | + | chr1_1:77273921-77273940 | None:intergenic | 55.0% | |
| !! | TATAGGAGCACCTCGCCAGT+TGG | - | chr1_1:77274582-77274601 | Msa0045350:intron | 55.0% |
| CACCTCTCTTCATGTCACGC+TGG | - | chr1_1:77274808-77274827 | Msa0045350:intron | 55.0% | |
| GGTGTCTGGGTCTCGAACAT+CGG | + | chr1_1:77275709-77275728 | None:intergenic | 55.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:77264109-77264128 | None:intergenic | 60.0% | |
| GGGTTCGAGTCGTTCGCCTT+TGG | + | chr1_1:77271955-77271974 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:77264105-77264124 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:77264106-77264125 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:77264440-77264459 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:77264460-77264479 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:77264461-77264480 | None:intergenic | 65.0% |
| GGCGATGGAACTACCCGGCA+TGG | - | chr1_1:77268437-77268456 | Msa0045350:intron | 65.0% | |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:77264103-77264122 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:77264104-77264123 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:77264448-77264467 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:77264449-77264468 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:77264457-77264476 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77263828 | 77278514 | 77263828 | ID=Msa0045350;Name=Msa0045350 |
| chr1_1 | mRNA | 77263828 | 77278514 | 77263828 | ID=Msa0045350-mRNA-1;Parent=Msa0045350;Name=Msa0045350-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0|0.14|0|0.37|0.14|0.25|8|0|159 |
| chr1_1 | exon | 77278510 | 77278514 | 77278510 | ID=Msa0045350-mRNA-1:exon:26364;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77278359 | 77278366 | 77278359 | ID=Msa0045350-mRNA-1:exon:26363;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77277741 | 77277850 | 77277741 | ID=Msa0045350-mRNA-1:exon:26362;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77275720 | 77275833 | 77275720 | ID=Msa0045350-mRNA-1:exon:26361;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77274825 | 77274906 | 77274825 | ID=Msa0045350-mRNA-1:exon:26360;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77273843 | 77273904 | 77273843 | ID=Msa0045350-mRNA-1:exon:26359;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77264058 | 77264064 | 77264058 | ID=Msa0045350-mRNA-1:exon:26358;Parent=Msa0045350-mRNA-1 |
| chr1_1 | exon | 77263828 | 77263916 | 77263828 | ID=Msa0045350-mRNA-1:exon:26357;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77278510 | 77278514 | 77278510 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77278359 | 77278366 | 77278359 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77277741 | 77277850 | 77277741 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77275720 | 77275833 | 77275720 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77274825 | 77274906 | 77274825 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77273843 | 77273904 | 77273843 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77264058 | 77264064 | 77264058 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| chr1_1 | CDS | 77263828 | 77263916 | 77263828 | ID=Msa0045350-mRNA-1:cds;Parent=Msa0045350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
