Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045120 | sp|P42813|RNS1_ARATH | 31.720 | 186 | 113 | 5 | 70 | 250 | 30 | 206 | 1.08e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa0045120 | 0.838395 | 2.949745e-57 | -8.615850e-47 |
| Msa0045090 | Msa0045120 | 0.950035 | 3.774940e-108 | -8.615850e-47 |
| Msa0045100 | Msa0045120 | 0.895435 | 9.609265e-76 | -8.615850e-47 |
| Msa0045120 | Msa0045140 | 0.938985 | 2.712634e-99 | -8.615850e-47 |
| Msa0045120 | Msa0045150 | 0.948730 | 5.282360e-107 | -8.615850e-47 |
| Msa0045120 | Msa0045160 | 0.905790 | 2.956046e-80 | -8.615850e-47 |
| Msa0045120 | Msa0045190 | 0.829720 | 4.396418e-55 | -8.615850e-47 |
| Msa0045120 | Msa0045350 | 0.940787 | 1.281635e-100 | -8.615850e-47 |
| Msa0045120 | Msa0045370 | 0.955361 | 3.623539e-113 | -8.615850e-47 |
| Msa0045120 | Msa0045380 | 0.880328 | 6.011317e-70 | -8.615850e-47 |
| Msa0045120 | Msa0045400 | 0.926921 | 2.408109e-91 | -8.615850e-47 |
| Msa0045120 | Msa0045420 | 0.821655 | 3.597766e-53 | -8.615850e-47 |
| Msa0045120 | Msa1084980 | 0.826009 | 3.430861e-54 | -8.615850e-47 |
| Msa0045120 | Msa1085000 | 0.940520 | 2.027798e-100 | -8.615850e-47 |
| Msa0045120 | Msa1085010 | 0.882518 | 9.737233e-71 | -8.615850e-47 |
| Msa0045120 | Msa1426790 | 0.916037 | 2.882616e-85 | -8.615850e-47 |
| Msa0045120 | Msa1426820 | 0.893221 | 7.694352e-75 | -8.615850e-47 |
| Msa0045120 | Msa1426840 | 0.870564 | 1.326858e-66 | -8.615850e-47 |
| Msa0045120 | Msa1432570 | 0.830143 | 3.467482e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045120 | MtrunA17_Chr6g0479301 | 41.423 | 239 | 128 | 6 | 33 | 264 | 36 | 269 | 1.88e-47 | 162 |
| Msa0045120 | MtrunA17_Chr6g0479341 | 44.444 | 198 | 97 | 8 | 70 | 264 | 71 | 258 | 1.16e-40 | 144 |
| Msa0045120 | MtrunA17_Chr5g0417371 | 34.409 | 186 | 108 | 6 | 70 | 250 | 27 | 203 | 9.53e-28 | 108 |
| Msa0045120 | MtrunA17_Chr2g0333421 | 41.905 | 105 | 61 | 0 | 155 | 259 | 12 | 116 | 1.06e-26 | 103 |
| Msa0045120 | MtrunA17_Chr3g0089081 | 34.694 | 196 | 112 | 9 | 67 | 258 | 67 | 250 | 2.99e-26 | 105 |
| Msa0045120 | MtrunA17_Chr4g0028501 | 35.233 | 193 | 99 | 9 | 69 | 258 | 20 | 189 | 4.70e-24 | 98.2 |
| Msa0045120 | MtrunA17_Chr5g0417391 | 33.871 | 186 | 109 | 6 | 70 | 250 | 29 | 205 | 9.57e-24 | 98.2 |
| Msa0045120 | MtrunA17_Chr5g0417341 | 30.851 | 188 | 113 | 6 | 70 | 250 | 28 | 205 | 5.29e-22 | 93.2 |
| Msa0045120 | MtrunA17_Chr5g0417321 | 31.016 | 187 | 113 | 6 | 70 | 250 | 28 | 204 | 1.15e-21 | 92.4 |
| Msa0045120 | MtrunA17_Chr3g0089091 | 34.158 | 202 | 117 | 9 | 61 | 258 | 70 | 259 | 1.51e-21 | 93.2 |
| Msa0045120 | MtrunA17_Chr5g0417381 | 34.409 | 186 | 108 | 6 | 70 | 250 | 28 | 204 | 5.01e-21 | 90.5 |
| Msa0045120 | MtrunA17_Chr5g0439761 | 30.108 | 186 | 115 | 6 | 65 | 247 | 15 | 188 | 5.95e-21 | 90.1 |
| Msa0045120 | MtrunA17_Chr2g0287471 | 31.868 | 182 | 106 | 7 | 79 | 258 | 166 | 331 | 3.82e-20 | 90.5 |
| Msa0045120 | MtrunA17_Chr6g0483091 | 31.000 | 200 | 123 | 7 | 65 | 258 | 20 | 210 | 1.08e-17 | 81.3 |
| Msa0045120 | MtrunA17_Chr8g0350611 | 31.633 | 196 | 115 | 8 | 67 | 258 | 101 | 281 | 6.98e-17 | 80.1 |
| Msa0045120 | MtrunA17_Chr1g0170111 | 32.212 | 208 | 124 | 8 | 61 | 258 | 89 | 289 | 1.06e-16 | 79.7 |
| Msa0045120 | MtrunA17_Chr8g0347611 | 29.412 | 187 | 115 | 7 | 70 | 247 | 43 | 221 | 7.05e-16 | 77.0 |
| Msa0045120 | MtrunA17_Chr2g0287541 | 26.289 | 194 | 121 | 8 | 67 | 258 | 4 | 177 | 1.50e-15 | 74.3 |
| Msa0045120 | MtrunA17_Chr5g0417401 | 31.383 | 188 | 112 | 7 | 70 | 250 | 28 | 205 | 1.53e-14 | 72.4 |
| Msa0045120 | MtrunA17_Chr8g0339941 | 26.738 | 187 | 116 | 7 | 66 | 247 | 412 | 582 | 1.09e-12 | 69.3 |
| Msa0045120 | MtrunA17_Chr2g0301881 | 82.051 | 39 | 7 | 0 | 262 | 300 | 304 | 342 | 5.52e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045120 | AT2G02990.1 | 31.720 | 186 | 113 | 5 | 70 | 250 | 30 | 206 | 1.09e-23 | 98.2 |
| Msa0045120 | AT1G14220.1 | 33.333 | 186 | 110 | 6 | 70 | 250 | 28 | 204 | 1.21e-23 | 98.2 |
| Msa0045120 | AT1G26820.1 | 30.526 | 190 | 118 | 6 | 66 | 250 | 18 | 198 | 6.77e-23 | 95.9 |
| Msa0045120 | AT2G39780.1 | 27.979 | 193 | 122 | 7 | 70 | 253 | 32 | 216 | 8.55e-17 | 79.7 |
| Msa0045120 | AT1G14210.1 | 29.412 | 187 | 116 | 5 | 68 | 247 | 24 | 201 | 2.01e-16 | 78.6 |
Find 78 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGCTGCTTTATTAAATT+TGG | 0.101813 | 1_1:+76825404 | None:intergenic |
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 1_1:-76821259 | Msa0045120:CDS |
| CTATTAACAATTGGCTATTC+TGG | 0.179671 | 1_1:-76825367 | Msa0045120:CDS |
| GTTCAATGCCCTCAGCTTTA+AGG | 0.205857 | 1_1:+76825237 | None:intergenic |
| TTACTCTTCACCATATTTCT+TGG | 0.227128 | 1_1:-76825899 | Msa0045120:CDS |
| TTTGTCTACCTCATCGTTCT+TGG | 0.247372 | 1_1:+76825214 | None:intergenic |
| CAGATTCAATGTAGGAAGTT+TGG | 0.252441 | 1_1:-76825146 | Msa0045120:CDS |
| TCTTTATTACTGTTTGTTCT+TGG | 0.257547 | 1_1:-76821355 | Msa0045120:CDS |
| CAATATCATTCCAAGAAATA+TGG | 0.263470 | 1_1:+76825889 | None:intergenic |
| GAAGACAATGTGCTTCATTA+TGG | 0.339430 | 1_1:+76825175 | None:intergenic |
| AGATTCAATGTAGGAAGTTT+GGG | 0.340685 | 1_1:-76825145 | Msa0045120:CDS |
| CCAAGGACCTTCAAAATTCA+TGG | 0.370264 | 1_1:-76825641 | Msa0045120:CDS |
| GAAAGAAACTTACTGAAAAC+TGG | 0.383534 | 1_1:-76825427 | Msa0045120:CDS |
| TTGTCTACCTCATCGTTCTT+GGG | 0.388218 | 1_1:+76825215 | None:intergenic |
| CCATACTATGATCATGGAGT+TGG | 0.413274 | 1_1:-76825933 | None:intergenic |
| GCCTTGCCAGTGCAAGTCAT+TGG | 0.416701 | 1_1:+76825590 | None:intergenic |
| CAATTTCCATACTATGATCA+TGG | 0.416957 | 1_1:-76825939 | None:intergenic |
| ATTCAGCCCCTCGGACGAAA+TGG | 0.419706 | 1_1:-76825797 | Msa0045120:CDS |
| GGAGGTAGTGGTGATGGTGG+TGG | 0.428940 | 1_1:+76825764 | None:intergenic |
| AACAGCGTTTACTTGAAGTA+AGG | 0.430526 | 1_1:-76825118 | Msa0045120:CDS |
| GGAGGTGGAGGTAGTGGTGA+TGG | 0.438073 | 1_1:+76825758 | None:intergenic |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+76822155 | None:intergenic |
| ATCATGTATCTATTAACAAT+TGG | 0.445466 | 1_1:-76825376 | Msa0045120:CDS |
| AAATCAAATGACGGGACATA+TGG | 0.448815 | 1_1:+76825734 | None:intergenic |
| TATGGAGGAGGTGGAGGTAG+TGG | 0.449115 | 1_1:+76825752 | None:intergenic |
| CATACTATGATCATGGAGTT+GGG | 0.450184 | 1_1:-76825932 | None:intergenic |
| GCCAAATTTAATAAAGCAGC+AGG | 0.452261 | 1_1:-76825405 | Msa0045120:CDS |
| TAGTCAATGAAGACAGCGTT+TGG | 0.456859 | 1_1:-76821379 | Msa0045120:CDS |
| ACAATTGGCTATTCTGGAGT+AGG | 0.475606 | 1_1:-76825361 | Msa0045120:CDS |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 1_1:+76822162 | None:intergenic |
| GGGACATATGGAGGAGGTGG+AGG | 0.489705 | 1_1:+76825746 | None:intergenic |
| GACGGGACATATGGAGGAGG+TGG | 0.492749 | 1_1:+76825743 | None:intergenic |
| TGTTTATGTTCTCTCTAACA+TGG | 0.497894 | 1_1:-76825712 | Msa0045120:CDS |
| GGTGGAGGTAGTGGTGATGG+TGG | 0.508338 | 1_1:+76825761 | None:intergenic |
| GGCTATTCTGGAGTAGGGAA+TGG | 0.510092 | 1_1:-76825355 | Msa0045120:CDS |
| TCCTACATTGAATCTGTGGC+TGG | 0.517348 | 1_1:+76825153 | None:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 1_1:-76821274 | Msa0045120:CDS |
| TCTGGAGTAGGGAATGGAAC+AGG | 0.519444 | 1_1:-76825349 | Msa0045120:CDS |
| CAATTGGCTATTCTGGAGTA+GGG | 0.525537 | 1_1:-76825360 | Msa0045120:CDS |
| CCTTCAAAATTCATGGGCTA+TGG | 0.525874 | 1_1:-76825634 | Msa0045120:CDS |
| TCTTCCGAGAGGCTGAATAG+TGG | 0.532726 | 1_1:+76825826 | None:intergenic |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | 1_1:-76821214 | Msa0045120:CDS |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | 1_1:+76822108 | None:intergenic |
| TCAGAACCAATGACTTGCAC+TGG | 0.534469 | 1_1:-76825596 | Msa0045120:CDS |
| CCGAGAGGCTGAATAGTGGT+AGG | 0.539520 | 1_1:+76825830 | None:intergenic |
| ACCGTCGATCTTGCAAAATG+TGG | 0.545122 | 1_1:+76825685 | None:intergenic |
| ACATAAACAAATCAAATGAC+GGG | 0.547951 | 1_1:+76825726 | None:intergenic |
| AACATAAACAAATCAAATGA+CGG | 0.553312 | 1_1:+76825725 | None:intergenic |
| ACCAATGACTTGCACTGGCA+AGG | 0.561773 | 1_1:-76825591 | Msa0045120:CDS |
| GGTAGACAAAGAAGACATGT+TGG | 0.579947 | 1_1:-76825201 | Msa0045120:CDS |
| CAAGGACCTTCAAAATTCAT+GGG | 0.588081 | 1_1:-76825640 | Msa0045120:CDS |
| GAACAGGCATGGAACATGCT+CGG | 0.589801 | 1_1:-76825333 | Msa0045120:CDS |
| CCGTCGATCTTGCAAAATGT+GGG | 0.597550 | 1_1:+76825686 | None:intergenic |
| AACTTCCTACATTGAATCTG+TGG | 0.598001 | 1_1:+76825149 | None:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | 1_1:-76822108 | Msa0045120:intron |
| TAACTCACCATGTTTATGCA+AGG | 0.601403 | 1_1:-76825856 | Msa0045120:CDS |
| AACTCACCATGTTTATGCAA+GGG | 0.605338 | 1_1:-76825855 | Msa0045120:CDS |
| CGAGAGGCTGAATAGTGGTA+GGG | 0.610425 | 1_1:+76825831 | None:intergenic |
| TCAAATGACGGGACATATGG+AGG | 0.613975 | 1_1:+76825737 | None:intergenic |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | 1_1:+76822113 | None:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 1_1:+76821259 | None:intergenic |
| AGTAGGGAATGGAACAGGCA+TGG | 0.625843 | 1_1:-76825344 | Msa0045120:CDS |
| ATGAACTACCTTAAAGCTGA+GGG | 0.629017 | 1_1:-76825245 | Msa0045120:CDS |
| CATGAACTACCTTAAAGCTG+AGG | 0.634907 | 1_1:-76825246 | Msa0045120:CDS |
| AATGTATAGATCAAGTGCCA+AGG | 0.635818 | 1_1:-76825658 | Msa0045120:CDS |
| TCCAGCCACAGATTCAATGT+AGG | 0.640140 | 1_1:-76825154 | Msa0045120:CDS |
| AGAAATACTATTCAGCCCCT+CGG | 0.644925 | 1_1:-76825806 | Msa0045120:CDS |
| CAAAGTATTCGTTTGCATCG+AGG | 0.647560 | 1_1:+76825303 | None:intergenic |
| TAGGGTCCCTTGCATAAACA+TGG | 0.652145 | 1_1:+76825849 | None:intergenic |
| TGCAAACGAATACTTTGCAG+TGG | 0.654740 | 1_1:-76825297 | Msa0045120:CDS |
| CCTACCACTATTCAGCCTCT+CGG | 0.656651 | 1_1:-76825830 | Msa0045120:CDS |
| AATGACGGGACATATGGAGG+AGG | 0.664965 | 1_1:+76825740 | None:intergenic |
| TCGATCTTGCAAAATGTGGG+AGG | 0.671506 | 1_1:+76825689 | None:intergenic |
| CAGGCATGGAACATGCTCGG+CGG | 0.681296 | 1_1:-76825330 | Msa0045120:CDS |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 1_1:+76822163 | None:intergenic |
| AATTCTAGAGTGATATACCA+AGG | 0.688891 | 1_1:+76821197 | None:intergenic |
| TGAATAGTATTTCTTCCGAG+AGG | 0.694559 | 1_1:+76825815 | None:intergenic |
| CATTGAACCCAAGAACGATG+AGG | 0.720821 | 1_1:-76825222 | Msa0045120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATACTTGTT+TGG | - | chr1_1:76822181-76822200 | Msa0045120:CDS | 10.0% |
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:76822285-76822304 | None:intergenic | 10.0% |
| !!! | ATATTTTAATTGAGAAAATT+GGG | - | chr1_1:76823364-76823383 | Msa0045120:intron | 10.0% |
| !!! | AAATTTGTCATATAGTTTTA+CGG | + | chr1_1:76821856-76821875 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:76822380-76822399 | Msa0045120:intron | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:76823062-76823081 | Msa0045120:intron | 15.0% |
| !!! | CATATTTTAATTGAGAAAAT+TGG | - | chr1_1:76823363-76823382 | Msa0045120:intron | 15.0% |
| !!! | AAATATTTTGAATTCGATTT+GGG | + | chr1_1:76823523-76823542 | None:intergenic | 15.0% |
| !!! | AAAATATTTTGAATTCGATT+TGG | + | chr1_1:76823524-76823543 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTCTGTTTACTT+TGG | - | chr1_1:76823869-76823888 | Msa0045120:intron | 15.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:76824831-76824850 | None:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:76825131-76825150 | Msa0045120:CDS | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:76825132-76825151 | Msa0045120:CDS | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:76825167-76825186 | Msa0045120:CDS | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:76825323-76825342 | None:intergenic | 15.0% |
| !! | AACATAAACAAATCAAATGA+CGG | + | chr1_1:76821405-76821424 | None:intergenic | 20.0% |
| !! | ATCATGTATCTATTAACAAT+TGG | - | chr1_1:76821751-76821770 | Msa0045120:intron | 20.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:76822475-76822494 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:76822542-76822561 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:76822744-76822763 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATTCGATTTG+GGG | + | chr1_1:76823522-76823541 | None:intergenic | 20.0% |
| !! | AATATACACCATATATGAAT+CGG | + | chr1_1:76823773-76823792 | None:intergenic | 20.0% |
| !! | TTCATATATGGTGTATATTT+AGG | - | chr1_1:76823774-76823793 | Msa0045120:intron | 20.0% |
| !!! | ACTTATTGTTAAGGAAATTT+TGG | - | chr1_1:76823940-76823959 | Msa0045120:intron | 20.0% |
| !! | TTAGATGTAATCATCATTAA+AGG | - | chr1_1:76824127-76824146 | Msa0045120:intron | 20.0% |
| !! | TAGATGTAATCATCATTAAA+GGG | - | chr1_1:76824128-76824147 | Msa0045120:intron | 20.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | chr1_1:76824900-76824919 | None:intergenic | 20.0% |
| ! | CAATATCATTCCAAGAAATA+TGG | + | chr1_1:76821241-76821260 | None:intergenic | 25.0% |
| ! | ACATAAACAAATCAAATGAC+GGG | + | chr1_1:76821404-76821423 | None:intergenic | 25.0% |
| !!! | GGTTCTGAGTTTTTTTTATT+GGG | + | chr1_1:76821519-76821538 | None:intergenic | 25.0% |
| !!! | TGGTTCTGAGTTTTTTTTAT+TGG | + | chr1_1:76821520-76821539 | None:intergenic | 25.0% |
| !! | TCTTCAGATTCTGAAAAATT+CGG | - | chr1_1:76821677-76821696 | Msa0045120:intron | 25.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:76822540-76822559 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:76822541-76822560 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:76822576-76822595 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:76822577-76822596 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:76822674-76822693 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:76822675-76822694 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:76822745-76822764 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:76822743-76822762 | Msa0045120:intron | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:76822827-76822846 | None:intergenic | 25.0% |
| ! | TTAATTGAGAAAATTGGGTT+TGG | - | chr1_1:76823369-76823388 | Msa0045120:intron | 25.0% |
| !!! | TTTTAATTTTTGTGCTGAAG+TGG | - | chr1_1:76823414-76823433 | Msa0045120:intron | 25.0% |
| ! | AATAAACAAAAGGAAGAAAG+AGG | + | chr1_1:76823849-76823868 | None:intergenic | 25.0% |
| ! | GGATGATATACTTATTGTTA+AGG | - | chr1_1:76823931-76823950 | Msa0045120:intron | 25.0% |
| ! | AATTAGATATCAGTTGCTAA+AGG | - | chr1_1:76824028-76824047 | Msa0045120:intron | 25.0% |
| ! | ATTCCTAGATATGAGAAAAT+GGG | + | chr1_1:76824067-76824086 | None:intergenic | 25.0% |
| ! | TATTCCTAGATATGAGAAAA+TGG | + | chr1_1:76824068-76824087 | None:intergenic | 25.0% |
| ! | TTCCACAGATTTCAAATAAT+AGG | + | chr1_1:76824102-76824121 | None:intergenic | 25.0% |
| ! | TTCATGTTTGTTCTTTAGTT+TGG | - | chr1_1:76824294-76824313 | Msa0045120:intron | 25.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | chr1_1:76824451-76824470 | None:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | chr1_1:76824538-76824557 | None:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | chr1_1:76824539-76824558 | None:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | chr1_1:76824562-76824581 | Msa0045120:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | chr1_1:76824586-76824605 | Msa0045120:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | chr1_1:76824587-76824606 | Msa0045120:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | chr1_1:76824636-76824655 | Msa0045120:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | chr1_1:76824769-76824788 | None:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | chr1_1:76824770-76824789 | None:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | chr1_1:76824901-76824920 | None:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:76825070-76825089 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | chr1_1:76825114-76825133 | None:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | chr1_1:76825170-76825189 | Msa0045120:CDS | 25.0% |
| ! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:76825451-76825470 | None:intergenic | 25.0% |
| ! | AAAGAAATTGTTGTAGATGA+AGG | + | chr1_1:76825562-76825581 | None:intergenic | 25.0% |
| !! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:76825738-76825757 | None:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:76825772-76825791 | Msa0045120:CDS | 25.0% |
| TTACTCTTCACCATATTTCT+TGG | - | chr1_1:76821228-76821247 | Msa0045120:CDS | 30.0% | |
| TGTTTATGTTCTCTCTAACA+TGG | - | chr1_1:76821415-76821434 | Msa0045120:intron | 30.0% | |
| ! | CTTCAGATTCTGAAAAATTC+GGG | - | chr1_1:76821678-76821697 | Msa0045120:intron | 30.0% |
| GAAAGAAACTTACTGAAAAC+TGG | - | chr1_1:76821700-76821719 | Msa0045120:intron | 30.0% | |
| !! | TCCTGCTGCTTTATTAAATT+TGG | + | chr1_1:76821726-76821745 | None:intergenic | 30.0% |
| CTATTAACAATTGGCTATTC+TGG | - | chr1_1:76821760-76821779 | Msa0045120:intron | 30.0% | |
| AGATTCAATGTAGGAAGTTT+GGG | - | chr1_1:76821982-76822001 | Msa0045120:intron | 30.0% | |
| TCCAATTTAAATACGATGAG+TGG | - | chr1_1:76822215-76822234 | Msa0045120:intron | 30.0% | |
| TCCACTCATCGTATTTAAAT+TGG | + | chr1_1:76822219-76822238 | None:intergenic | 30.0% | |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:76822610-76822629 | Msa0045120:intron | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:76822643-76822662 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:76822673-76822692 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:76822719-76822738 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:76822720-76822739 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:76822782-76822801 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:76823103-76823122 | Msa0045120:intron | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:76823168-76823187 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:76823191-76823210 | Msa0045120:intron | 30.0% | |
| CAGTATTTGAGTAACATAAC+CGG | + | chr1_1:76823678-76823697 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTCTGTCTCATTC+TGG | - | chr1_1:76823811-76823830 | Msa0045120:intron | 30.0% |
| TGTATGACGTAAATTGATGT+TGG | - | chr1_1:76823895-76823914 | Msa0045120:intron | 30.0% | |
| !! | GATGTTGGTAATTTACACAA+CGG | - | chr1_1:76823910-76823929 | Msa0045120:intron | 30.0% |
| ATGAGAAAATGGGAGAAAAA+AGG | + | chr1_1:76824057-76824076 | None:intergenic | 30.0% | |
| ! | GTCCTATTATTTGAAATCTG+TGG | - | chr1_1:76824097-76824116 | Msa0045120:intron | 30.0% |
| !!! | ATAGACTTTTAGCTCATCTT+GGG | - | chr1_1:76824239-76824258 | Msa0045120:intron | 30.0% |
| !! | ATGTTTGTTCTTTAGTTTGG+TGG | - | chr1_1:76824297-76824316 | Msa0045120:intron | 30.0% |
| ! | TAAACTAGGCTTTGTAAACA+TGG | + | chr1_1:76824367-76824386 | None:intergenic | 30.0% |
| CTGATAGTTTACATACTGAA+TGG | - | chr1_1:76824561-76824580 | Msa0045120:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | chr1_1:76824563-76824582 | Msa0045120:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | chr1_1:76824598-76824617 | Msa0045120:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | chr1_1:76824599-76824618 | Msa0045120:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | chr1_1:76824634-76824653 | None:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | chr1_1:76824635-76824654 | None:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | chr1_1:76824635-76824654 | Msa0045120:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | chr1_1:76824637-76824656 | Msa0045120:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | chr1_1:76824768-76824787 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:76824975-76824994 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:76824976-76824995 | Msa0045120:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:76825304-76825323 | None:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | chr1_1:76825353-76825372 | Msa0045120:CDS | 30.0% | |
| TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:76825536-76825555 | None:intergenic | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:76825574-76825593 | Msa0045120:CDS | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:76825597-76825616 | Msa0045120:CDS | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:76825598-76825617 | Msa0045120:CDS | 30.0% | |
| ! | CTATGATTTTCTCTGAACTT+TGG | - | chr1_1:76825683-76825702 | Msa0045120:CDS | 30.0% |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:76825897-76825916 | None:intergenic | 30.0% |
| TAACTCACCATGTTTATGCA+AGG | - | chr1_1:76821271-76821290 | Msa0045120:CDS | 35.0% | |
| AACTCACCATGTTTATGCAA+GGG | - | chr1_1:76821272-76821291 | Msa0045120:CDS | 35.0% | |
| TGAATAGTATTTCTTCCGAG+AGG | + | chr1_1:76821315-76821334 | None:intergenic | 35.0% | |
| ! | AAATCAAATGACGGGACATA+TGG | + | chr1_1:76821396-76821415 | None:intergenic | 35.0% |
| AATGTATAGATCAAGTGCCA+AGG | - | chr1_1:76821469-76821488 | Msa0045120:intron | 35.0% | |
| CAAGGACCTTCAAAATTCAT+GGG | - | chr1_1:76821487-76821506 | Msa0045120:intron | 35.0% | |
| GCCAAATTTAATAAAGCAGC+AGG | - | chr1_1:76821722-76821741 | Msa0045120:intron | 35.0% | |
| ATGAACTACCTTAAAGCTGA+GGG | - | chr1_1:76821882-76821901 | Msa0045120:intron | 35.0% | |
| GAAGACAATGTGCTTCATTA+TGG | + | chr1_1:76821955-76821974 | None:intergenic | 35.0% | |
| AACTTCCTACATTGAATCTG+TGG | + | chr1_1:76821981-76822000 | None:intergenic | 35.0% | |
| CAGATTCAATGTAGGAAGTT+TGG | - | chr1_1:76821981-76822000 | Msa0045120:intron | 35.0% | |
| AACAGCGTTTACTTGAAGTA+AGG | - | chr1_1:76822009-76822028 | Msa0045120:intron | 35.0% | |
| ! | CTGTCACAACTTTTGTATGT+CGG | + | chr1_1:76822059-76822078 | None:intergenic | 35.0% |
| CAGAATATTATGCTCTTCTC+TGG | + | chr1_1:76822098-76822117 | None:intergenic | 35.0% | |
| TTTAAATACGATGAGTGGAG+TGG | - | chr1_1:76822220-76822239 | Msa0045120:intron | 35.0% | |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:76822607-76822626 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:76822685-76822704 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:76822772-76822791 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:76822837-76822856 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:76823020-76823039 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:76823091-76823110 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:76823092-76823111 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:76823194-76823213 | Msa0045120:intron | 35.0% | |
| AACATTTAGCAAACAAGCAC+CGG | + | chr1_1:76823307-76823326 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAACTTG+TGG | - | chr1_1:76823556-76823575 | Msa0045120:intron | 35.0% | |
| !! | AGAAGCATTTGAATTTCGCA+GGG | + | chr1_1:76823650-76823669 | None:intergenic | 35.0% |
| !! | AAGAAGCATTTGAATTTCGC+AGG | + | chr1_1:76823651-76823670 | None:intergenic | 35.0% |
| ATTCAAATGCTTCTTCTCTC+CGG | - | chr1_1:76823656-76823675 | Msa0045120:intron | 35.0% | |
| ATTGTATGCTAGACACTTAG+GGG | + | chr1_1:76823726-76823745 | None:intergenic | 35.0% | |
| GATTGTATGCTAGACACTTA+GGG | + | chr1_1:76823727-76823746 | None:intergenic | 35.0% | |
| AGATTGTATGCTAGACACTT+AGG | + | chr1_1:76823728-76823747 | None:intergenic | 35.0% | |
| CGGTGAAGTCTAAGAAATAA+AGG | + | chr1_1:76823753-76823772 | None:intergenic | 35.0% | |
| !! | AGACTTCACCGATTCATATA+TGG | - | chr1_1:76823762-76823781 | Msa0045120:intron | 35.0% |
| !! | GTTAAGGAAATTTTGGTCTC+TGG | - | chr1_1:76823947-76823966 | Msa0045120:intron | 35.0% |
| TAGATATCAGTTGCTAAAGG+TGG | - | chr1_1:76824031-76824050 | Msa0045120:intron | 35.0% | |
| ! | TCTCCCATTTTCTCATATCT+AGG | - | chr1_1:76824061-76824080 | Msa0045120:intron | 35.0% |
| !!! | TGGGGCATATTCGTTTTTTT+GGG | + | chr1_1:76824158-76824177 | None:intergenic | 35.0% |
| !!! | ATGGGGCATATTCGTTTTTT+TGG | + | chr1_1:76824159-76824178 | None:intergenic | 35.0% |
| ! | TGATGATAATTTGTGGCGAA+AGG | + | chr1_1:76824188-76824207 | None:intergenic | 35.0% |
| !! | GCTGGTTTGATGATAATTTG+TGG | + | chr1_1:76824195-76824214 | None:intergenic | 35.0% |
| TCTATCCATGGTAAATGAGT+GGG | + | chr1_1:76824224-76824243 | None:intergenic | 35.0% | |
| ATGAGCTAAAAGTCTATCCA+TGG | + | chr1_1:76824236-76824255 | None:intergenic | 35.0% | |
| !!! | GATAGACTTTTAGCTCATCT+TGG | - | chr1_1:76824238-76824257 | Msa0045120:intron | 35.0% |
| !! | AGGCTTTGTAAACATGGTTT+TGG | + | chr1_1:76824361-76824380 | None:intergenic | 35.0% |
| ACAAAGCCTAGTTTACAACT+TGG | - | chr1_1:76824372-76824391 | Msa0045120:intron | 35.0% | |
| CAAAGCCTAGTTTACAACTT+GGG | - | chr1_1:76824373-76824392 | Msa0045120:intron | 35.0% | |
| TAGATCCCAAGTTGTAAACT+AGG | + | chr1_1:76824381-76824400 | None:intergenic | 35.0% | |
| GGGAAAGTGAAAGAGAAATA+GGG | + | chr1_1:76824518-76824537 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | chr1_1:76824519-76824538 | None:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | chr1_1:76824520-76824539 | Msa0045120:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:76825490-76825509 | Msa0045120:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:76825491-76825510 | Msa0045120:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:76825586-76825605 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:76825839-76825858 | Msa0045120:CDS | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | chr1_1:76825913-76825932 | Msa0045120:CDS | 35.0% | |
| AGAAATACTATTCAGCCCCT+CGG | - | chr1_1:76821321-76821340 | Msa0045120:CDS | 40.0% | |
| ! | TCTTTTTCCATTTCGTCCGA+GGG | + | chr1_1:76821340-76821359 | None:intergenic | 40.0% |
| !! | CCATGAATTTTGAAGGTCCT+TGG | + | chr1_1:76821489-76821508 | None:intergenic | 40.0% |
| CCAAGGACCTTCAAAATTCA+TGG | - | chr1_1:76821486-76821505 | Msa0045120:intron | 40.0% | |
| ! | CCATAGCCCATGAATTTTGA+AGG | + | chr1_1:76821496-76821515 | None:intergenic | 40.0% |
| ! | CCTTCAAAATTCATGGGCTA+TGG | - | chr1_1:76821493-76821512 | Msa0045120:intron | 40.0% |
| !! | ACAATTGGCTATTCTGGAGT+AGG | - | chr1_1:76821766-76821785 | Msa0045120:intron | 40.0% |
| !! | CAATTGGCTATTCTGGAGTA+GGG | - | chr1_1:76821767-76821786 | Msa0045120:intron | 40.0% |
| ! | CAAAGTATTCGTTTGCATCG+AGG | + | chr1_1:76821827-76821846 | None:intergenic | 40.0% |
| TGCAAACGAATACTTTGCAG+TGG | - | chr1_1:76821830-76821849 | Msa0045120:intron | 40.0% | |
| CATGAACTACCTTAAAGCTG+AGG | - | chr1_1:76821881-76821900 | Msa0045120:intron | 40.0% | |
| TTGTCTACCTCATCGTTCTT+GGG | + | chr1_1:76821915-76821934 | None:intergenic | 40.0% | |
| TTTGTCTACCTCATCGTTCT+TGG | + | chr1_1:76821916-76821935 | None:intergenic | 40.0% | |
| GGTAGACAAAGAAGACATGT+TGG | - | chr1_1:76821926-76821945 | Msa0045120:intron | 40.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:76822704-76822723 | Msa0045120:intron | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:76822713-76822732 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:76822798-76822817 | Msa0045120:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:76822812-76822831 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:76822973-76822992 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:76822974-76822993 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGAATAGCTCCCTC+CGG | - | chr1_1:76823285-76823304 | Msa0045120:intron | 40.0% |
| !! | TGCCACATTTGAGCTGATTT+TGG | - | chr1_1:76823441-76823460 | Msa0045120:intron | 40.0% |
| CACCAAAATCAGCTCAAATG+TGG | + | chr1_1:76823446-76823465 | None:intergenic | 40.0% | |
| CTGGATTGTAACATGAGGAA+AGG | - | chr1_1:76823966-76823985 | Msa0045120:intron | 40.0% | |
| !! | GAGGAAAGGAGAAGCATTAT+AGG | - | chr1_1:76823980-76823999 | Msa0045120:intron | 40.0% |
| !!! | GGCATATTCGTTTTTTTGGG+TGG | + | chr1_1:76824155-76824174 | None:intergenic | 40.0% |
| ! | GATAATTTGTGGCGAAAGGT+TGG | + | chr1_1:76824184-76824203 | None:intergenic | 40.0% |
| GTCTATCCATGGTAAATGAG+TGG | + | chr1_1:76824225-76824244 | None:intergenic | 40.0% | |
| ATGCCCCATCAAAATTTAGC+AGG | + | chr1_1:76824643-76824662 | None:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | chr1_1:76824644-76824663 | Msa0045120:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | chr1_1:76824735-76824754 | None:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | chr1_1:76824742-76824761 | Msa0045120:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | chr1_1:76824886-76824905 | None:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:76824967-76824986 | None:intergenic | 40.0% | |
| TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:76825748-76825767 | Msa0045120:CDS | 40.0% | |
| TAGGGTCCCTTGCATAAACA+TGG | + | chr1_1:76821281-76821300 | None:intergenic | 45.0% | |
| ! | CTTTTTCCATTTCGTCCGAG+GGG | + | chr1_1:76821339-76821358 | None:intergenic | 45.0% |
| ! | GTCTTTTTCCATTTCGTCCG+AGG | + | chr1_1:76821341-76821360 | None:intergenic | 45.0% |
| ! | TCAAATGACGGGACATATGG+AGG | + | chr1_1:76821393-76821412 | None:intergenic | 45.0% |
| TCGATCTTGCAAAATGTGGG+AGG | + | chr1_1:76821441-76821460 | None:intergenic | 45.0% | |
| CCGTCGATCTTGCAAAATGT+GGG | + | chr1_1:76821444-76821463 | None:intergenic | 45.0% | |
| ! | CCCACATTTTGCAAGATCGA+CGG | - | chr1_1:76821441-76821460 | Msa0045120:intron | 45.0% |
| ACCGTCGATCTTGCAAAATG+TGG | + | chr1_1:76821445-76821464 | None:intergenic | 45.0% | |
| ! | TCAGAACCAATGACTTGCAC+TGG | - | chr1_1:76821531-76821550 | Msa0045120:intron | 45.0% |
| GTTCAATGCCCTCAGCTTTA+AGG | + | chr1_1:76821893-76821912 | None:intergenic | 45.0% | |
| CATTGAACCCAAGAACGATG+AGG | - | chr1_1:76821905-76821924 | Msa0045120:intron | 45.0% | |
| TCCAGCCACAGATTCAATGT+AGG | - | chr1_1:76821973-76821992 | Msa0045120:intron | 45.0% | |
| TCCTACATTGAATCTGTGGC+TGG | + | chr1_1:76821977-76821996 | None:intergenic | 45.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:76822533-76822552 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:76822593-76822612 | Msa0045120:intron | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:76822636-76822655 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:76822819-76822838 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:76822926-76822945 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:76822936-76822955 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:76822945-76822964 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:76822964-76822983 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:76822998-76823017 | Msa0045120:intron | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:76823226-76823245 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:76823227-76823246 | None:intergenic | 45.0% | |
| !! | TTTAGCAAACAAGCACCGGA+GGG | + | chr1_1:76823303-76823322 | None:intergenic | 45.0% |
| !! | ATTTAGCAAACAAGCACCGG+AGG | + | chr1_1:76823304-76823323 | None:intergenic | 45.0% |
| !! | TCGATTTGGGGCTTGTGTTA+TGG | + | chr1_1:76823510-76823529 | None:intergenic | 45.0% |
| GGTCTCTGGATTGTAACATG+AGG | - | chr1_1:76823961-76823980 | Msa0045120:intron | 45.0% | |
| TCCATGGTAAATGAGTGGGT+GGG | + | chr1_1:76824220-76824239 | None:intergenic | 45.0% | |
| ATCCATGGTAAATGAGTGGG+TGG | + | chr1_1:76824221-76824240 | None:intergenic | 45.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | chr1_1:76824647-76824666 | Msa0045120:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | chr1_1:76824648-76824667 | Msa0045120:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | chr1_1:76824758-76824777 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:76824968-76824987 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | chr1_1:76825022-76825041 | None:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | chr1_1:76825019-76825038 | Msa0045120:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:76825026-76825045 | Msa0045120:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr1_1:76825219-76825238 | None:intergenic | 45.0% | |
| ! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:76825434-76825453 | None:intergenic | 45.0% |
| ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:76825618-76825637 | None:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:76825871-76825890 | None:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:76825868-76825887 | Msa0045120:CDS | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:76825871-76825890 | Msa0045120:CDS | 45.0% |
| !! | AAAATTAAAAAATAAACAAA+AGG | + | chr1_1:76823859-76823878 | None:intergenic | 5.0% |
| CGAGAGGCTGAATAGTGGTA+GGG | + | chr1_1:76821299-76821318 | None:intergenic | 50.0% | |
| CCTACCACTATTCAGCCTCT+CGG | - | chr1_1:76821297-76821316 | Msa0045120:CDS | 50.0% | |
| TCTTCCGAGAGGCTGAATAG+TGG | + | chr1_1:76821304-76821323 | None:intergenic | 50.0% | |
| ! | AATGACGGGACATATGGAGG+AGG | + | chr1_1:76821390-76821409 | None:intergenic | 50.0% |
| ! | ACCAATGACTTGCACTGGCA+AGG | - | chr1_1:76821536-76821555 | Msa0045120:intron | 50.0% |
| !! | GGCTATTCTGGAGTAGGGAA+TGG | - | chr1_1:76821772-76821791 | Msa0045120:intron | 50.0% |
| ! | TCTGGAGTAGGGAATGGAAC+AGG | - | chr1_1:76821778-76821797 | Msa0045120:intron | 50.0% |
| AGTAGGGAATGGAACAGGCA+TGG | - | chr1_1:76821783-76821802 | Msa0045120:intron | 50.0% | |
| GAACAGGCATGGAACATGCT+CGG | - | chr1_1:76821794-76821813 | Msa0045120:intron | 50.0% | |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:76822532-76822551 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:76822849-76822868 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:76822885-76822904 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:76822896-76822915 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:76822897-76822916 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:76822927-76822946 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:76822930-76822949 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:76823209-76823228 | Msa0045120:intron | 50.0% |
| TGTGGCGAAAGGTTGGAGAT+GGG | + | chr1_1:76824177-76824196 | None:intergenic | 50.0% | |
| TTGTGGCGAAAGGTTGGAGA+TGG | + | chr1_1:76824178-76824197 | None:intergenic | 50.0% | |
| CCATGGTAAATGAGTGGGTG+GGG | + | chr1_1:76824219-76824238 | None:intergenic | 50.0% | |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | chr1_1:76825017-76825036 | None:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:76825201-76825220 | Msa0045120:CDS | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:76825853-76825872 | Msa0045120:CDS | 50.0% |
| CCGAGAGGCTGAATAGTGGT+AGG | + | chr1_1:76821300-76821319 | None:intergenic | 55.0% | |
| ATTCAGCCCCTCGGACGAAA+TGG | - | chr1_1:76821330-76821349 | Msa0045120:CDS | 55.0% | |
| TATGGAGGAGGTGGAGGTAG+TGG | + | chr1_1:76821378-76821397 | None:intergenic | 55.0% | |
| GCCTTGCCAGTGCAAGTCAT+TGG | + | chr1_1:76821540-76821559 | None:intergenic | 55.0% | |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:76822850-76822869 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:76822882-76822901 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:76822907-76822926 | None:intergenic | 55.0% | |
| GTGGCGAAAGGTTGGAGATG+GGG | + | chr1_1:76824176-76824195 | None:intergenic | 55.0% | |
| TAAATGAGTGGGTGGGGAGC+TGG | + | chr1_1:76824213-76824232 | None:intergenic | 55.0% | |
| CCCCACCCACTCATTTACCA+TGG | - | chr1_1:76824216-76824235 | Msa0045120:intron | 55.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | chr1_1:76825184-76825203 | Msa0045120:CDS | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:76825200-76825219 | Msa0045120:CDS | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:76825208-76825227 | Msa0045120:CDS | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:76825209-76825228 | Msa0045120:CDS | 55.0% |
| !! | GGAGGTAGTGGTGATGGTGG+TGG | + | chr1_1:76821366-76821385 | None:intergenic | 60.0% |
| !! | GGTGGAGGTAGTGGTGATGG+TGG | + | chr1_1:76821369-76821388 | None:intergenic | 60.0% |
| ! | GGAGGTGGAGGTAGTGGTGA+TGG | + | chr1_1:76821372-76821391 | None:intergenic | 60.0% |
| GGGACATATGGAGGAGGTGG+AGG | + | chr1_1:76821384-76821403 | None:intergenic | 60.0% | |
| GACGGGACATATGGAGGAGG+TGG | + | chr1_1:76821387-76821406 | None:intergenic | 60.0% | |
| CAGGCATGGAACATGCTCGG+CGG | - | chr1_1:76821797-76821816 | Msa0045120:intron | 60.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:76822527-76822546 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:76822523-76822542 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:76822524-76822543 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:76822858-76822877 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:76822878-76822897 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:76822879-76822898 | None:intergenic | 65.0% |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:76822521-76822540 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:76822522-76822541 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:76822866-76822885 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:76822867-76822886 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:76822875-76822894 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 76821201 | 76825948 | 76821201 | ID=Msa0045120;Name=Msa0045120 |
| chr1_1 | mRNA | 76821201 | 76825948 | 76821201 | ID=Msa0045120-mRNA-1;Parent=Msa0045120;Name=Msa0045120-mRNA-1;_AED=0.87;_eAED=0.93;_QI=0|0|0.25|0.5|0.66|0.75|4|0|365 |
| chr1_1 | exon | 76825565 | 76825948 | 76825565 | ID=Msa0045120-mRNA-1:exon:26269;Parent=Msa0045120-mRNA-1 |
| chr1_1 | exon | 76825072 | 76825465 | 76825072 | ID=Msa0045120-mRNA-1:exon:26268;Parent=Msa0045120-mRNA-1 |
| chr1_1 | exon | 76822109 | 76822230 | 76822109 | ID=Msa0045120-mRNA-1:exon:26267;Parent=Msa0045120-mRNA-1 |
| chr1_1 | exon | 76821201 | 76821398 | 76821201 | ID=Msa0045120-mRNA-1:exon:26266;Parent=Msa0045120-mRNA-1 |
| chr1_1 | CDS | 76825565 | 76825948 | 76825565 | ID=Msa0045120-mRNA-1:cds;Parent=Msa0045120-mRNA-1 |
| chr1_1 | CDS | 76825072 | 76825465 | 76825072 | ID=Msa0045120-mRNA-1:cds;Parent=Msa0045120-mRNA-1 |
| chr1_1 | CDS | 76822109 | 76822230 | 76822109 | ID=Msa0045120-mRNA-1:cds;Parent=Msa0045120-mRNA-1 |
| chr1_1 | CDS | 76821201 | 76821398 | 76821201 | ID=Msa0045120-mRNA-1:cds;Parent=Msa0045120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
