Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426790 | KJB14357.1 | 49.573 | 117 | 14 | 1 | 84 | 155 | 50 | 166 | 3.32e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426790 | sp|Q9SZN1|VATB2_ARATH | 86.667 | 45 | 6 | 0 | 84 | 128 | 49 | 93 | 4.50e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426790 | A0A0D2M9W6 | 49.573 | 117 | 14 | 1 | 84 | 155 | 50 | 166 | 1.58e-21 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa1426790 | 0.832374 | 9.801910e-56 | -8.615850e-47 |
| Msa0045090 | Msa1426790 | 0.914652 | 1.491083e-84 | -8.615850e-47 |
| Msa0045100 | Msa1426790 | 0.899413 | 2.030512e-77 | -8.615850e-47 |
| Msa0045120 | Msa1426790 | 0.916037 | 2.882616e-85 | -8.615850e-47 |
| Msa0045140 | Msa1426790 | 0.884143 | 2.465188e-71 | -8.615850e-47 |
| Msa0045150 | Msa1426790 | 0.911223 | 7.753559e-83 | -8.615850e-47 |
| Msa0045160 | Msa1426790 | 0.913952 | 3.385348e-84 | -8.615850e-47 |
| Msa0045190 | Msa1426790 | 0.823152 | 1.615094e-53 | -8.615850e-47 |
| Msa0045350 | Msa1426790 | 0.925239 | 2.399948e-90 | -8.615850e-47 |
| Msa0045370 | Msa1426790 | 0.920019 | 2.172521e-87 | -8.615850e-47 |
| Msa0045380 | Msa1426790 | 0.889292 | 2.760229e-73 | -8.615850e-47 |
| Msa0045400 | Msa1426790 | 0.883020 | 6.384526e-71 | -8.615850e-47 |
| Msa0045420 | Msa1426790 | 0.846472 | 2.126704e-59 | -8.615850e-47 |
| Msa1426790 | Msa1426820 | 0.898932 | 3.267158e-77 | -8.615850e-47 |
| Msa1426790 | Msa1426840 | 0.863259 | 2.829194e-64 | -8.615850e-47 |
| Msa1426790 | Msa1432570 | 0.806610 | 7.567150e-50 | -8.615850e-47 |
| Msa1084980 | Msa1426790 | 0.815780 | 7.757008e-52 | -8.615850e-47 |
| Msa1085000 | Msa1426790 | 0.907923 | 2.997438e-81 | -8.615850e-47 |
| Msa1085010 | Msa1426790 | 0.893275 | 7.312649e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426790 | MtrunA17_Chr7g0250051 | 88.889 | 45 | 5 | 0 | 84 | 128 | 49 | 93 | 1.92e-20 | 87.4 |
| Msa1426790 | MtrunA17_Chr1g0211291 | 88.889 | 45 | 5 | 0 | 84 | 128 | 50 | 94 | 2.09e-20 | 87.4 |
| Msa1426790 | MtrunA17_Chr2g0301881 | 80.488 | 41 | 8 | 0 | 19 | 59 | 304 | 344 | 2.19e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426790 | AT4G38510.1 | 86.667 | 45 | 6 | 0 | 84 | 128 | 49 | 93 | 4.58e-20 | 87.0 |
| Msa1426790 | AT4G38510.3 | 86.667 | 45 | 6 | 0 | 84 | 128 | 49 | 93 | 4.58e-20 | 87.0 |
| Msa1426790 | AT4G38510.4 | 86.667 | 45 | 6 | 0 | 84 | 128 | 49 | 93 | 4.58e-20 | 87.0 |
| Msa1426790 | AT4G38510.2 | 86.667 | 45 | 6 | 0 | 84 | 128 | 49 | 93 | 4.58e-20 | 87.0 |
| Msa1426790 | AT4G38510.5 | 86.667 | 45 | 6 | 0 | 84 | 128 | 56 | 100 | 4.73e-20 | 87.0 |
| Msa1426790 | AT1G20260.1 | 86.667 | 45 | 6 | 0 | 84 | 128 | 48 | 92 | 7.02e-20 | 86.3 |
| Msa1426790 | AT1G76030.1 | 86.667 | 45 | 6 | 0 | 84 | 128 | 48 | 92 | 7.65e-20 | 86.3 |
Find 44 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | tig0026076:-2735 | Msa1426790:CDS |
| AGGGAAAGTGAAAGAGAAAT+AGG | 0.262952 | tig0026076:+4083 | Msa1426790:intergenic |
| TTTACGACCGTACAGTTTAC+TGG | 0.269439 | tig0026076:-1443 | Msa1426790:CDS |
| CAGGTATTTGAAGGTACATC+TGG | 0.345618 | tig0026076:-1479 | Msa1426790:CDS |
| TTTCTCTTTCACTTTCCCTT+AGG | 0.385500 | tig0026076:-4079 | Msa1426790:five_prime_UTR |
| CTGATAGTTTACATACTGAA+TGG | 0.397987 | tig0026076:-4038 | Msa1426790:five_prime_UTR |
| GGGAAAGTGAAAGAGAAATA+GGG | 0.404223 | tig0026076:+4084 | Msa1426790:intergenic |
| TGATAGTTTACATACTGAAT+GGG | 0.410481 | tig0026076:-4037 | Msa1426790:five_prime_UTR |
| TGGCGAAAAGGCTGTTGTTC+AGG | 0.415818 | tig0026076:-1735 | Msa1426790:intron |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | tig0026076:+3627 | Msa1426790:intergenic |
| TCAAAATTTAGCAGGAATTG+AGG | 0.447186 | tig0026076:+3967 | Msa1426790:intergenic |
| AAGCGTGACTTTGAGGAGAA+TGG | 0.451660 | tig0026076:-87 | Msa1426790:CDS |
| TGCCGCACAGATTTGTCGTC+AGG | 0.454323 | tig0026076:-1023 | Msa1426790:intron |
| CAAAATTTAGCAGGAATTGA+GGG | 0.465190 | tig0026076:+3968 | Msa1426790:intergenic |
| CTCGAGAACTTGTCCATGCC+GGG | 0.477725 | tig0026076:+1763 | Msa1426790:intergenic |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | tig0026076:+3634 | Msa1426790:intergenic |
| GGACAAGTTCTCGAGATTGA+TGG | 0.478592 | tig0026076:-1755 | Msa1426790:CDS |
| GCACAGATTTGTCGTCAGGC+TGG | 0.487600 | tig0026076:-1019 | Msa1426790:intron |
| ACTATTGATCAGGTATTTGA+AGG | 0.488267 | tig0026076:-1488 | Msa1426790:intron |
| ATTGAGATTCATATAACCTA+AGG | 0.501545 | tig0026076:+4063 | None:intergenic |
| ACAAAGCCTAGTTTACAACT+TGG | 0.505548 | tig0026076:-4227 | None:intergenic |
| CTTTGAGGAGAATGGCTCAA+TGG | 0.507722 | tig0026076:-79 | Msa1426790:CDS |
| TCTCGAGAACTTGTCCATGC+CGG | 0.512745 | tig0026076:+1762 | Msa1426790:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | tig0026076:-2750 | Msa1426790:CDS |
| CAAAGCCTAGTTTACAACTT+GGG | 0.523530 | tig0026076:-4226 | None:intergenic |
| TCTCGAGATTGATGGCGAAA+AGG | 0.527436 | tig0026076:-1747 | Msa1426790:CDS |
| TGCGGCTATGGGAGTTAACA+TGG | 0.532881 | tig0026076:-127 | Msa1426790:CDS |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | tig0026076:-2690 | Msa1426790:intron |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | tig0026076:+3580 | Msa1426790:intergenic |
| ATGCCCCATCAAAATTTAGC+AGG | 0.537635 | tig0026076:+3959 | Msa1426790:intergenic |
| AGATTGATACAAGAGTATAA+TGG | 0.543993 | tig0026076:+4151 | Msa1426790:intergenic |
| GGCGATGGAACTACCCGGCA+TGG | 0.573515 | tig0026076:-1776 | Msa1426790:CDS |
| TTGAGATTCATATAACCTAA+GGG | 0.598661 | tig0026076:+4064 | Msa1426790:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | tig0026076:-3580 | Msa1426790:intron |
| AGGTATTTGAAGGTACATCT+GGG | 0.603787 | tig0026076:-1478 | Msa1426790:CDS |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | tig0026076:+3585 | Msa1426790:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | tig0026076:+2735 | Msa1426790:intergenic |
| GATTATCAGACTTCTCTAGT+CGG | 0.624851 | tig0026076:+987 | Msa1426790:intergenic |
| GATAGTTTACATACTGAATG+GGG | 0.626147 | tig0026076:-4036 | Msa1426790:five_prime_UTR |
| GACCGTACAGTTTACTGGAG+AGG | 0.629013 | tig0026076:-1438 | Msa1426790:intron |
| TACCTCTCCAGTAAACTGTA+CGG | 0.633139 | tig0026076:+1436 | Msa1426790:intergenic |
| GAAGTCTGATAATCTTCTTG+AGG | 0.648163 | tig0026076:-978 | Msa1426790:intron |
| GTTTAGGCGATGGAACTACC+CGG | 0.678023 | tig0026076:-1781 | Msa1426790:intron |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | tig0026076:+3635 | Msa1426780:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATGTATCTTAAAT+CGG | - | tig0026076:2079-2098 | Msa1426790:intron | 10.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | tig0026076:525-544 | Msa1426790:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | tig0026076:825-844 | Msa1426790:intron | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | tig0026076:826-845 | Msa1426790:intron | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | tig0026076:861-880 | Msa1426790:intron | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | tig0026076:1017-1036 | Msa1426790:intergenic | 15.0% |
| !!! | TAAACAGCATATATTTTTAT+GGG | + | tig0026076:2965-2984 | Msa1426790:intergenic | 15.0% |
| !!! | ATAAACAGCATATATTTTTA+TGG | + | tig0026076:2966-2985 | Msa1426790:intergenic | 15.0% |
| !! | AAAAAGAAATATTATCAGAT+AGG | - | tig0026076:3485-3504 | Msa1426790:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | tig0026076:3706-3725 | Msa1426790:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | tig0026076:3707-3726 | Msa1426790:intergenic | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | tig0026076:3771-3790 | Msa1426790:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | tig0026076:3772-3791 | Msa1426790:intergenic | 15.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | tig0026076:594-613 | Msa1426790:intergenic | 20.0% |
| !!! | ATCAATTTATTTCAAGTAGT+TGG | - | tig0026076:1761-1780 | Msa1426790:CDS | 20.0% |
| !! | AAGTTTGAACACATTTAAAA+AGG | + | tig0026076:2164-2183 | Msa1426790:intergenic | 20.0% |
| !! | AATAAAGAGACACATAATTT+AGG | + | tig0026076:2294-2313 | Msa1426790:intergenic | 20.0% |
| !! | AGTTAAAATTTAGTCACAAA+GGG | + | tig0026076:2444-2463 | Msa1426790:intergenic | 20.0% |
| !! | AAGTTAAAATTTAGTCACAA+AGG | + | tig0026076:2445-2464 | Msa1426790:intergenic | 20.0% |
| !!! | TTGTGACTAAATTTTAACTT+CGG | - | tig0026076:2445-2464 | Msa1426790:intron | 20.0% |
| !! | AAACTATAAAATGACGTTAA+AGG | + | tig0026076:2770-2789 | Msa1426790:intergenic | 20.0% |
| !! | CTTTATAATAACTATTGATC+AGG | - | tig0026076:2795-2814 | Msa1426790:intron | 20.0% |
| !! | TAACAGTTAATGCATTATTT+AGG | + | tig0026076:3021-3040 | Msa1426790:intergenic | 20.0% |
| !! | TATCTTCTTTATCATTATCT+GGG | + | tig0026076:3135-3154 | Msa1426790:intergenic | 20.0% |
| !! | TTATCTTCTTTATCATTATC+TGG | + | tig0026076:3136-3155 | Msa1426790:intergenic | 20.0% |
| !! | AAATATTATCAGATAGGAAA+GGG | - | tig0026076:3491-3510 | Msa1426790:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | tig0026076:3673-3692 | Msa1426790:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | tig0026076:3674-3693 | Msa1426790:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | tig0026076:3748-3767 | Msa1426790:intergenic | 20.0% |
| !! | TACTCATATTACATAAAGTA+TGG | + | tig0026076:4079-4098 | Msa1426790:intergenic | 20.0% |
| !! | TACTTTATGTAATATGAGTA+AGG | - | tig0026076:4079-4098 | Msa1426790:five_prime_UTR | 20.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | tig0026076:145-164 | Msa0946850:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | tig0026076:232-251 | Msa1426790:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | tig0026076:233-252 | Msa1426790:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | tig0026076:256-275 | Msa1426790:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | tig0026076:280-299 | Msa1426790:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | tig0026076:281-300 | Msa1426790:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | tig0026076:330-349 | Msa1426790:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | tig0026076:463-482 | Msa1426790:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | tig0026076:464-483 | Msa1426790:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | tig0026076:595-614 | Msa1426790:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | tig0026076:764-783 | Msa1426790:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | tig0026076:808-827 | Msa1426790:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | tig0026076:864-883 | Msa1426790:intron | 25.0% |
| ! | AACATGAAATAATAAGAGAC+TGG | + | tig0026076:1145-1164 | Msa1426790:intergenic | 25.0% |
| ! | AAAGAAATTGTTGTAGATGA+AGG | + | tig0026076:1254-1273 | Msa1426790:intergenic | 25.0% |
| !! | TCATTGACTAGTAAATTGAA+AGG | + | tig0026076:1428-1447 | Msa1426790:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | tig0026076:1462-1481 | Msa1426790:CDS | 25.0% |
| ! | AACAAGTTGTTTAATAGCAT+TGG | - | tig0026076:1735-1754 | Msa1426790:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | tig0026076:1996-2015 | Msa1426790:intergenic | 25.0% |
| !!! | TAGGCAACTTTTTACTTTTT+AGG | + | tig0026076:2021-2040 | Msa1426790:intergenic | 25.0% |
| !!! | AGATACATTTTTTTTTTCCC+TGG | + | tig0026076:2074-2093 | Msa1426790:intergenic | 25.0% |
| ! | TAAAATCACACATTTAGATC+AGG | + | tig0026076:2109-2128 | Msa1426790:intergenic | 25.0% |
| ! | AATACCATAAGTTATCAACA+CGG | + | tig0026076:2248-2267 | Msa1426790:intergenic | 25.0% |
| ! | TTGACAATCTCTTGATATTT+GGG | + | tig0026076:2487-2506 | Msa1426790:intergenic | 25.0% |
| ! | ATTGACAATCTCTTGATATT+TGG | + | tig0026076:2488-2507 | Msa1426790:intergenic | 25.0% |
| ! | AATCTTATTATGCATGCTTA+AGG | + | tig0026076:2590-2609 | Msa1426790:intergenic | 25.0% |
| !! | TGGATTTTTCTTATTGATGA+TGG | - | tig0026076:3460-3479 | Msa1426790:intron | 25.0% |
| ! | GAAATATTATCAGATAGGAA+AGG | - | tig0026076:3490-3509 | Msa1426790:intron | 25.0% |
| ! | AATATTATCAGATAGGAAAG+GGG | - | tig0026076:3492-3511 | Msa1426790:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | tig0026076:3638-3657 | Msa1426790:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | tig0026076:3749-3768 | Msa1426790:intergenic | 25.0% |
| ! | ATAATGATTAATACGTCAGT+AGG | + | tig0026076:3899-3918 | Msa1426790:intergenic | 25.0% |
| ! | TTTATGTAATATGAGTAAGG+TGG | - | tig0026076:4082-4101 | Msa1426790:five_prime_UTR | 25.0% |
| ! | TTACAAATCTTGATTTATGC+AGG | - | tig0026076:4110-4129 | Msa1426790:five_prime_UTR | 25.0% |
| ! | TACAAATCTTGATTTATGCA+GGG | - | tig0026076:4111-4130 | Msa1426790:five_prime_UTR | 25.0% |
| CTGATAGTTTACATACTGAA+TGG | - | tig0026076:255-274 | Msa1426790:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | tig0026076:257-276 | Msa1426790:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | tig0026076:292-311 | Msa1426790:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | tig0026076:293-312 | Msa1426790:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | tig0026076:328-347 | Msa1426790:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | tig0026076:329-348 | Msa1426790:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | tig0026076:329-348 | Msa1426790:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | tig0026076:331-350 | Msa1426790:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | tig0026076:462-481 | Msa1426790:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | tig0026076:669-688 | Msa1426790:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | tig0026076:670-689 | Msa1426790:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | tig0026076:998-1017 | Msa1426790:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | tig0026076:1047-1066 | Msa1426790:intron | 30.0% | |
| TAAATGCAAGCGATAAGAAA+AGG | + | tig0026076:1228-1247 | Msa1426790:intergenic | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | tig0026076:1266-1285 | Msa1426790:intron | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | tig0026076:1289-1308 | Msa1426790:intron | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | tig0026076:1290-1309 | Msa1426790:intron | 30.0% | |
| ! | TCTATGATTTTCTCTGAACT+TGG | - | tig0026076:1373-1392 | Msa1426790:intron | 30.0% |
| ! | GCACATTTTCTATAACTTCT+TGG | + | tig0026076:1587-1606 | Msa1426790:intergenic | 30.0% |
| !! | AATTCTAGAGTGATATACCA+AGG | + | tig0026076:1623-1642 | Msa1426790:intergenic | 30.0% |
| ! | TTATTTCAAGTAGTTGGACT+AGG | - | tig0026076:1767-1786 | Msa1426790:CDS | 30.0% |
| GATGTATGTGGTCTATAATA+TGG | + | tig0026076:1984-2003 | Msa1426790:intergenic | 30.0% | |
| GAGATTGTCAATATTCGTTT+AGG | - | tig0026076:2496-2515 | Msa1426790:intron | 30.0% | |
| ACTATTGATCAGGTATTTGA+AGG | - | tig0026076:2805-2824 | Msa1426790:intron | 30.0% | |
| TGTCTTGTCTCAATGAAATT+TGG | - | tig0026076:2986-3005 | Msa1426790:intron | 30.0% | |
| CTCAATGAAATTTGGATTAC+AGG | - | tig0026076:2994-3013 | Msa1426790:intron | 30.0% | |
| TTATAAGTATAGCCAACCAT+CGG | + | tig0026076:3092-3111 | Msa1426790:intergenic | 30.0% | |
| TTCTTTATCATTATCTGGGA+CGG | + | tig0026076:3131-3150 | Msa1426790:intergenic | 30.0% | |
| TTGCATGTCATCTTGATTAA+TGG | - | tig0026076:3216-3235 | Msa1426790:intron | 30.0% | |
| ! | CTCTTGAATTGTATGACTTT+TGG | - | tig0026076:3411-3430 | Msa1426790:intron | 30.0% |
| ATTGTGATCTGTGTTTCATT+TGG | - | tig0026076:3440-3459 | Msa1426790:intron | 30.0% | |
| !! | TTTGACTACTTTTGTAAAGG+CGG | + | tig0026076:3568-3587 | Msa1426790:intergenic | 30.0% |
| !! | TGGTTTGACTACTTTTGTAA+AGG | + | tig0026076:3571-3590 | Msa1426790:intergenic | 30.0% |
| AGAAAATGGATCAGTTATTC+CGG | + | tig0026076:3624-3643 | Msa1426790:intergenic | 30.0% | |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | tig0026076:3659-3678 | Msa1426790:intergenic | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | tig0026076:3660-3679 | Msa1426790:intergenic | 30.0% |
| GTGTATAAATAAAGGGAAAG+TGG | + | tig0026076:3764-3783 | Msa1426790:intergenic | 30.0% | |
| AATACGTCAGTAGGAATAAA+GGG | + | tig0026076:3890-3909 | Msa1426790:intergenic | 30.0% | |
| TAATACGTCAGTAGGAATAA+AGG | + | tig0026076:3891-3910 | Msa1426790:intergenic | 30.0% | |
| TATAAGCAATATCACAAGTG+AGG | + | tig0026076:3979-3998 | Msa1426790:intergenic | 30.0% | |
| TCTTATTGCCTTAGATTAAG+CGG | - | tig0026076:4014-4033 | Msa1426790:five_prime_UTR | 30.0% | |
| AAAATAGACCGCTTAATCTA+AGG | + | tig0026076:4025-4044 | Msa1426790:intergenic | 30.0% | |
| ACAAATCTTGATTTATGCAG+GGG | - | tig0026076:4112-4131 | Msa1426790:five_prime_UTR | 30.0% | |
| !!! | CAATTTTGCCATTGTTTTTG+CGG | - | tig0026076:4148-4167 | Msa1426790:five_prime_UTR | 30.0% |
| GGGAAAGTGAAAGAGAAATA+GGG | + | tig0026076:212-231 | Msa0946850:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | tig0026076:213-232 | Msa0946850:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | tig0026076:214-233 | Msa1426790:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | tig0026076:1182-1201 | Msa1426790:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | tig0026076:1183-1202 | Msa1426790:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | tig0026076:1278-1297 | Msa1426790:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | tig0026076:1529-1548 | Msa1426790:intron | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | tig0026076:1603-1622 | Msa1426790:intron | 35.0% | |
| TAATTTCATAGCACGTAGCT+GGG | + | tig0026076:1716-1735 | Msa1426790:intergenic | 35.0% | |
| TTAATTTCATAGCACGTAGC+TGG | + | tig0026076:1717-1736 | Msa1426790:intergenic | 35.0% | |
| ! | ATGTTGCTTACATTTGAGAC+CGG | + | tig0026076:1922-1941 | Msa1426790:intergenic | 35.0% |
| !! | CAATCCGTGTTGATAACTTA+TGG | - | tig0026076:2241-2260 | Msa1426790:intron | 35.0% |
| ACTTTCTCAAGAATGACCAA+TGG | + | tig0026076:2355-2374 | Msa1426790:intergenic | 35.0% | |
| GGTCATTCTTGAGAAAGTTA+AGG | - | tig0026076:2357-2376 | Msa1426790:intron | 35.0% | |
| ! | AGGTATTTGAAGGTACATCT+GGG | - | tig0026076:2815-2834 | Msa1426790:intron | 35.0% |
| AAAACACATAATTGAGCCGA+TGG | - | tig0026076:3073-3092 | Msa1426790:intron | 35.0% | |
| GATTATCAGACTTCTCTAGT+CGG | + | tig0026076:3309-3328 | Msa1426790:intergenic | 35.0% | |
| GAAGTCTGATAATCTTCTTG+AGG | - | tig0026076:3315-3334 | Msa1426790:intron | 35.0% | |
| GGGGAATAAAAAATGCGATA+AGG | - | tig0026076:3511-3530 | Msa1426790:intron | 35.0% | |
| !!! | GTAGCATTGTGCTTGTTTTT+TGG | + | tig0026076:3591-3610 | Msa1426790:intergenic | 35.0% |
| GAAAATGGATCAGTTATTCC+GGG | + | tig0026076:3623-3642 | Msa1426790:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | tig0026076:3793-3812 | Msa1426790:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | tig0026076:3806-3825 | Msa1426790:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | tig0026076:3807-3826 | Msa1426790:intron | 35.0% | |
| ATTCATGTCAGTTTCTTCAC+AGG | + | tig0026076:3944-3963 | Msa1426790:intergenic | 35.0% | |
| CAAATCTTGATTTATGCAGG+GGG | - | tig0026076:4113-4132 | Msa1426790:five_prime_UTR | 35.0% | |
| !!! | GTTTTTTAAGCGTGACTTTG+AGG | - | tig0026076:4199-4218 | Msa1426790:five_prime_UTR | 35.0% |
| ATGCCCCATCAAAATTTAGC+AGG | + | tig0026076:337-356 | Msa1426790:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | tig0026076:338-357 | Msa1426790:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | tig0026076:429-448 | Msa1426790:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | tig0026076:436-455 | Msa1426790:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | tig0026076:580-599 | Msa1426790:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | tig0026076:661-680 | Msa1426790:intergenic | 40.0% | |
| TAGTCAATGAAGACAGCGTT+TGG | - | tig0026076:1438-1457 | Msa1426790:intron | 40.0% | |
| CCAAGTTAAATGTATGCAGC+TGG | + | tig0026076:1661-1680 | Msa1426790:intergenic | 40.0% | |
| CCAGCTGCATACATTTAACT+TGG | - | tig0026076:1658-1677 | Msa1426790:intron | 40.0% | |
| ATCTTGTGTAATACTCCCTC+CGG | - | tig0026076:1900-1919 | Msa1426790:intron | 40.0% | |
| ACAGAATACATGACTGTGTC+TGG | - | tig0026076:2320-2339 | Msa1426790:intron | 40.0% | |
| TCTCAAGAATGACCAATGGT+CGG | + | tig0026076:2351-2370 | Msa1426790:intergenic | 40.0% | |
| TAACTTCGGTCAACTGCATT+AGG | - | tig0026076:2459-2478 | Msa1426790:intron | 40.0% | |
| AACTTCGGTCAACTGCATTA+GGG | - | tig0026076:2460-2479 | Msa1426790:intron | 40.0% | |
| GTCAATATTCGTTTAGGCGA+TGG | - | tig0026076:2502-2521 | Msa1426790:intron | 40.0% | |
| ! | GTCAGAAGCTCAGAACATTT+TGG | + | tig0026076:2643-2662 | Msa1426790:intergenic | 40.0% |
| AATAAAGCAGACAACGATGG+AGG | + | tig0026076:2686-2705 | Msa1426790:intergenic | 40.0% | |
| GTGAATAAAGCAGACAACGA+TGG | + | tig0026076:2689-2708 | Msa1426790:intergenic | 40.0% | |
| ! | CAGGTATTTGAAGGTACATC+TGG | - | tig0026076:2814-2833 | Msa1426790:intron | 40.0% |
| TTTACGACCGTACAGTTTAC+TGG | - | tig0026076:2850-2869 | Msa1426790:intron | 40.0% | |
| TACCTCTCCAGTAAACTGTA+CGG | + | tig0026076:2860-2879 | Msa1426790:intergenic | 40.0% | |
| ! | TATCATTATCTGGGACGGTT+TGG | + | tig0026076:3126-3145 | Msa1426790:intergenic | 40.0% |
| GCTTAGGTGATAGTTACGAT+TGG | + | tig0026076:3161-3180 | Msa1426790:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | tig0026076:3809-3828 | Msa1426790:intergenic | 40.0% | |
| AGTTTCTTCACAGGAGTTGT+TGG | + | tig0026076:3935-3954 | Msa1426790:intergenic | 40.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | tig0026076:341-360 | Msa1426790:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | tig0026076:342-361 | Msa1426790:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | tig0026076:452-471 | Msa1426790:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | tig0026076:662-681 | Msa1426790:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | tig0026076:716-735 | Msa1426790:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | tig0026076:713-732 | Msa1426790:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | tig0026076:720-739 | Msa1426790:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | tig0026076:913-932 | Msa1426790:intergenic | 45.0% | |
| ! | GACTGGAGCATTAGACAATG+AGG | + | tig0026076:1128-1147 | Msa1426790:intergenic | 45.0% |
| ATTCGCATTGCTTCAAACCC+TGG | + | tig0026076:1310-1329 | Msa1426790:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | tig0026076:1561-1580 | Msa1426790:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | tig0026076:1558-1577 | Msa1426790:intron | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | tig0026076:1561-1580 | Msa1426790:intron | 45.0% |
| ! | TGCTTACATTTGAGACCGGA+GGG | + | tig0026076:1918-1937 | Msa1426790:intergenic | 45.0% |
| ! | TTGCTTACATTTGAGACCGG+AGG | + | tig0026076:1919-1938 | Msa1426790:intergenic | 45.0% |
| TGGTTTCTCACATACTCCCT+CGG | + | tig0026076:2054-2073 | Msa1426790:intergenic | 45.0% | |
| ! | AGGGAGTATGTGAGAAACCA+GGG | - | tig0026076:2054-2073 | Msa1426790:intron | 45.0% |
| GGACAAGTTCTCGAGATTGA+TGG | - | tig0026076:2538-2557 | Msa1426790:intron | 45.0% | |
| !! | TCTCGAGATTGATGGCGAAA+AGG | - | tig0026076:2546-2565 | Msa1426790:intron | 45.0% |
| CACATAATTGAGCCGATGGT+TGG | - | tig0026076:3077-3096 | Msa1426790:intron | 45.0% | |
| !! | ATTATCTGGGACGGTTTGGT+AGG | + | tig0026076:3122-3141 | Msa1426790:intergenic | 45.0% |
| !! | ACAGCAGTTTTGGCATGCTT+AGG | + | tig0026076:3177-3196 | Msa1426790:intergenic | 45.0% |
| TGACATGCAACACAGTCTGA+CGG | + | tig0026076:3206-3225 | Msa1426790:intergenic | 45.0% | |
| ! | CGATAAGGTTACAGTGCTGA+AGG | - | tig0026076:3526-3545 | Msa1426790:intron | 45.0% |
| ATGGATCAGTTATTCCGGGA+CGG | + | tig0026076:3619-3638 | Msa1426790:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | tig0026076:3811-3830 | Msa1426790:intron | 45.0% | |
| ATCATATACTACCTCCGTCC+CGG | + | tig0026076:3828-3847 | Msa1426790:intergenic | 45.0% | |
| ATCTTGATTTATGCAGGGGG+AGG | - | tig0026076:4116-4135 | Msa1426790:five_prime_UTR | 45.0% | |
| !!! | TGCCATTGTTTTTGCGGCTA+TGG | - | tig0026076:4154-4173 | Msa1426790:five_prime_UTR | 45.0% |
| !!! | GCCATTGTTTTTGCGGCTAT+GGG | - | tig0026076:4155-4174 | Msa1426790:five_prime_UTR | 45.0% |
| TCCCATAGCCGCAAAAACAA+TGG | + | tig0026076:4159-4178 | Msa1426790:intergenic | 45.0% | |
| ! | AAGCGTGACTTTGAGGAGAA+TGG | - | tig0026076:4206-4225 | Msa1426790:five_prime_UTR | 45.0% |
| ! | CTTTGAGGAGAATGGCTCAA+TGG | - | tig0026076:4214-4233 | Msa1426790:five_prime_UTR | 45.0% |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | tig0026076:711-730 | Msa1426790:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | tig0026076:895-914 | Msa1426790:intron | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | tig0026076:1543-1562 | Msa1426790:intron | 50.0% |
| TATGCAGCTGGAACACGTTC+AGG | + | tig0026076:1649-1668 | Msa1426790:intergenic | 50.0% | |
| ! | TTGCCTACATTTGAGACCCG+AGG | - | tig0026076:2034-2053 | Msa1426790:intron | 50.0% |
| ! | TGCCTACATTTGAGACCCGA+GGG | - | tig0026076:2035-2054 | Msa1426790:intron | 50.0% |
| GGTTTCTCACATACTCCCTC+GGG | + | tig0026076:2053-2072 | Msa1426790:intergenic | 50.0% | |
| ! | GAGGGAGTATGTGAGAAACC+AGG | - | tig0026076:2053-2072 | Msa1426790:intron | 50.0% |
| ! | TGTCTGGAGTTACCGACCAT+TGG | - | tig0026076:2336-2355 | Msa1426790:intron | 50.0% |
| GTTTAGGCGATGGAACTACC+CGG | - | tig0026076:2512-2531 | Msa1426790:intron | 50.0% | |
| TCTCGAGAACTTGTCCATGC+CGG | + | tig0026076:2534-2553 | Msa1426790:intergenic | 50.0% | |
| TGGCGAAAAGGCTGTTGTTC+AGG | - | tig0026076:2558-2577 | Msa1426790:intron | 50.0% | |
| GACCGTACAGTTTACTGGAG+AGG | - | tig0026076:2855-2874 | Msa1426790:intron | 50.0% | |
| ! | ACGGGGGATAACAGCAGTTT+TGG | + | tig0026076:3187-3206 | Msa1426790:intergenic | 50.0% |
| ACATGCAACACAGTCTGACG+GGG | + | tig0026076:3204-3223 | Msa1426790:intergenic | 50.0% | |
| GACATGCAACACAGTCTGAC+GGG | + | tig0026076:3205-3224 | Msa1426790:intergenic | 50.0% | |
| AGCCTGACGACAAATCTGTG+CGG | + | tig0026076:3275-3294 | Msa1426790:intergenic | 50.0% | |
| ATCAGTTATTCCGGGACGGA+GGG | + | tig0026076:3615-3634 | Msa1426790:intergenic | 50.0% | |
| TGCGGCTATGGGAGTTAACA+TGG | - | tig0026076:4166-4185 | Msa1426790:five_prime_UTR | 50.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | tig0026076:878-897 | Msa1426790:intron | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | tig0026076:894-913 | Msa1426790:intron | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | tig0026076:902-921 | Msa1426790:intron | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | tig0026076:903-922 | Msa1426790:intron | 55.0% |
| CTCCCTCGGGTCTCAAATGT+AGG | + | tig0026076:2040-2059 | Msa1426790:intergenic | 55.0% | |
| CTCGAGAACTTGTCCATGCC+GGG | + | tig0026076:2533-2552 | Msa1426790:intergenic | 55.0% | |
| CATGCAACACAGTCTGACGG+GGG | + | tig0026076:3203-3222 | Msa1426790:intergenic | 55.0% | |
| TGCCGCACAGATTTGTCGTC+AGG | - | tig0026076:3270-3289 | Msa1426790:intron | 55.0% | |
| GCACAGATTTGTCGTCAGGC+TGG | - | tig0026076:3274-3293 | Msa1426790:intron | 55.0% | |
| GATCAGTTATTCCGGGACGG+AGG | + | tig0026076:3616-3635 | Msa1426790:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | tig0026076:3814-3833 | Msa1426790:intron | 55.0% | |
| CAATGCTACTCCCTCCGTCC+CGG | - | tig0026076:3602-3621 | Msa1426790:CDS | 60.0% | |
| GGCGATGGAACTACCCGGCA+TGG | - | tig0026076:2517-2536 | Msa1426790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026076 | gene | 76 | 4239 | 76 | ID=Msa1426790;Name=Msa1426790 |
| tig0026076 | mRNA | 76 | 4239 | 76 | ID=Msa1426790-mRNA-1;Parent=Msa1426790;Name=Msa1426790-mRNA-1;_AED=0.53;_eAED=0.53;_QI=235|0.33|0.28|0.42|1|1|7|0|180 |
| tig0026076 | exon | 76 | 183 | 76 | ID=Msa1426790-mRNA-1:exon:5158;Parent=Msa1426790-mRNA-1 |
| tig0026076 | exon | 979 | 1035 | 979 | ID=Msa1426790-mRNA-1:exon:5157;Parent=Msa1426790-mRNA-1 |
| tig0026076 | exon | 1439 | 1498 | 1439 | ID=Msa1426790-mRNA-1:exon:5156;Parent=Msa1426790-mRNA-1 |
| tig0026076 | exon | 1736 | 1797 | 1736 | ID=Msa1426790-mRNA-1:exon:5155;Parent=Msa1426790-mRNA-1 |
| tig0026076 | exon | 2691 | 2772 | 2691 | ID=Msa1426790-mRNA-1:exon:5154;Parent=Msa1426790-mRNA-1 |
| tig0026076 | exon | 3581 | 3702 | 3581 | ID=Msa1426790-mRNA-1:exon:5153;Parent=Msa1426790-mRNA-1 |
| tig0026076 | exon | 3956 | 4239 | 3956 | ID=Msa1426790-mRNA-1:exon:5152;Parent=Msa1426790-mRNA-1 |
| tig0026076 | five_prime_UTR | 4005 | 4239 | 4005 | ID=Msa1426790-mRNA-1:five_prime_utr;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 3956 | 4004 | 3956 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 3581 | 3702 | 3581 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 2691 | 2772 | 2691 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 1736 | 1797 | 1736 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 1439 | 1498 | 1439 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 979 | 1035 | 979 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| tig0026076 | CDS | 76 | 183 | 76 | ID=Msa1426790-mRNA-1:cds;Parent=Msa1426790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
