Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045370 | sp|P42813|RNS1_ARATH | 31.720 | 186 | 113 | 5 | 70 | 250 | 30 | 206 | 1.08e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa0045370 | 0.842526 | 2.449925e-58 | -8.615850e-47 |
| Msa0045090 | Msa0045370 | 0.943807 | 6.173943e-103 | -8.615850e-47 |
| Msa0045100 | Msa0045370 | 0.907615 | 4.185824e-81 | -8.615850e-47 |
| Msa0045120 | Msa0045370 | 0.955361 | 3.623539e-113 | -8.615850e-47 |
| Msa0045140 | Msa0045370 | 0.919110 | 6.778405e-87 | -8.615850e-47 |
| Msa0045150 | Msa0045370 | 0.937797 | 1.930730e-98 | -8.615850e-47 |
| Msa0045160 | Msa0045370 | 0.910870 | 1.154420e-82 | -8.615850e-47 |
| Msa0045190 | Msa0045370 | 0.841094 | 5.853675e-58 | -8.615850e-47 |
| Msa0045350 | Msa0045370 | 0.941208 | 6.194617e-101 | -8.615850e-47 |
| Msa0045370 | Msa0045380 | 0.888960 | 3.711245e-73 | -8.615850e-47 |
| Msa0045370 | Msa0045400 | 0.941505 | 3.703513e-101 | -8.615850e-47 |
| Msa0045370 | Msa0045420 | 0.827583 | 1.444213e-54 | -8.615850e-47 |
| Msa0045370 | Msa0045440 | 0.807999 | 3.842041e-50 | -8.615850e-47 |
| Msa0045370 | Msa0484480 | 0.802093 | 6.607469e-49 | -8.615850e-47 |
| Msa0045370 | Msa1084980 | 0.829514 | 4.932608e-55 | -8.615850e-47 |
| Msa0045370 | Msa1085000 | 0.933307 | 2.292039e-95 | -8.615850e-47 |
| Msa0045370 | Msa1085010 | 0.891683 | 3.175435e-74 | -8.615850e-47 |
| Msa0045370 | Msa1310870 | 0.800603 | 1.333567e-48 | -8.615850e-47 |
| Msa0045370 | Msa1426790 | 0.920019 | 2.172521e-87 | -8.615850e-47 |
| Msa0045370 | Msa1426820 | 0.903985 | 1.967781e-79 | -8.615850e-47 |
| Msa0045370 | Msa1426840 | 0.876213 | 1.669023e-68 | -8.615850e-47 |
| Msa0045370 | Msa1432570 | 0.827071 | 1.915395e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045370 | MtrunA17_Chr6g0479301 | 41.423 | 239 | 128 | 6 | 33 | 264 | 36 | 269 | 1.88e-47 | 162 |
| Msa0045370 | MtrunA17_Chr6g0479341 | 44.444 | 198 | 97 | 8 | 70 | 264 | 71 | 258 | 1.16e-40 | 144 |
| Msa0045370 | MtrunA17_Chr5g0417371 | 34.409 | 186 | 108 | 6 | 70 | 250 | 27 | 203 | 9.53e-28 | 108 |
| Msa0045370 | MtrunA17_Chr2g0333421 | 41.905 | 105 | 61 | 0 | 155 | 259 | 12 | 116 | 1.06e-26 | 103 |
| Msa0045370 | MtrunA17_Chr3g0089081 | 34.694 | 196 | 112 | 9 | 67 | 258 | 67 | 250 | 2.99e-26 | 105 |
| Msa0045370 | MtrunA17_Chr4g0028501 | 35.233 | 193 | 99 | 9 | 69 | 258 | 20 | 189 | 4.70e-24 | 98.2 |
| Msa0045370 | MtrunA17_Chr5g0417391 | 33.871 | 186 | 109 | 6 | 70 | 250 | 29 | 205 | 9.57e-24 | 98.2 |
| Msa0045370 | MtrunA17_Chr5g0417341 | 30.851 | 188 | 113 | 6 | 70 | 250 | 28 | 205 | 5.29e-22 | 93.2 |
| Msa0045370 | MtrunA17_Chr5g0417321 | 31.016 | 187 | 113 | 6 | 70 | 250 | 28 | 204 | 1.15e-21 | 92.4 |
| Msa0045370 | MtrunA17_Chr3g0089091 | 34.158 | 202 | 117 | 9 | 61 | 258 | 70 | 259 | 1.51e-21 | 93.2 |
| Msa0045370 | MtrunA17_Chr5g0417381 | 34.409 | 186 | 108 | 6 | 70 | 250 | 28 | 204 | 5.01e-21 | 90.5 |
| Msa0045370 | MtrunA17_Chr5g0439761 | 30.108 | 186 | 115 | 6 | 65 | 247 | 15 | 188 | 5.95e-21 | 90.1 |
| Msa0045370 | MtrunA17_Chr2g0287471 | 31.868 | 182 | 106 | 7 | 79 | 258 | 166 | 331 | 3.82e-20 | 90.5 |
| Msa0045370 | MtrunA17_Chr6g0483091 | 31.000 | 200 | 123 | 7 | 65 | 258 | 20 | 210 | 1.08e-17 | 81.3 |
| Msa0045370 | MtrunA17_Chr8g0350611 | 31.633 | 196 | 115 | 8 | 67 | 258 | 101 | 281 | 6.98e-17 | 80.1 |
| Msa0045370 | MtrunA17_Chr1g0170111 | 32.212 | 208 | 124 | 8 | 61 | 258 | 89 | 289 | 1.06e-16 | 79.7 |
| Msa0045370 | MtrunA17_Chr8g0347611 | 29.412 | 187 | 115 | 7 | 70 | 247 | 43 | 221 | 7.05e-16 | 77.0 |
| Msa0045370 | MtrunA17_Chr2g0287541 | 26.289 | 194 | 121 | 8 | 67 | 258 | 4 | 177 | 1.50e-15 | 74.3 |
| Msa0045370 | MtrunA17_Chr5g0417401 | 31.383 | 188 | 112 | 7 | 70 | 250 | 28 | 205 | 1.53e-14 | 72.4 |
| Msa0045370 | MtrunA17_Chr8g0339941 | 26.738 | 187 | 116 | 7 | 66 | 247 | 412 | 582 | 1.09e-12 | 69.3 |
| Msa0045370 | MtrunA17_Chr2g0301881 | 82.051 | 39 | 7 | 0 | 262 | 300 | 304 | 342 | 5.52e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045370 | AT2G02990.1 | 31.720 | 186 | 113 | 5 | 70 | 250 | 30 | 206 | 1.09e-23 | 98.2 |
| Msa0045370 | AT1G14220.1 | 33.333 | 186 | 110 | 6 | 70 | 250 | 28 | 204 | 1.21e-23 | 98.2 |
| Msa0045370 | AT1G26820.1 | 30.526 | 190 | 118 | 6 | 66 | 250 | 18 | 198 | 6.77e-23 | 95.9 |
| Msa0045370 | AT2G39780.1 | 27.979 | 193 | 122 | 7 | 70 | 253 | 32 | 216 | 8.55e-17 | 79.7 |
| Msa0045370 | AT1G14210.1 | 29.412 | 187 | 116 | 5 | 68 | 247 | 24 | 201 | 2.01e-16 | 78.6 |
Find 78 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGCTGCTTTATTAAATT+TGG | 0.101813 | 1_1:+77295480 | None:intergenic |
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 1_1:-77291335 | Msa0045370:CDS |
| CTATTAACAATTGGCTATTC+TGG | 0.179671 | 1_1:-77295443 | Msa0045370:CDS |
| GTTCAATGCCCTCAGCTTTA+AGG | 0.205857 | 1_1:+77295313 | None:intergenic |
| TTACTCTTCACCATATTTCT+TGG | 0.227128 | 1_1:-77295972 | Msa0045370:CDS |
| TTTGTCTACCTCATCGTTCT+TGG | 0.247372 | 1_1:+77295290 | None:intergenic |
| CAGATTCAATGTAGGAAGTT+TGG | 0.252441 | 1_1:-77295222 | Msa0045370:CDS |
| TCTTTATTACTGTTTGTTCT+TGG | 0.257547 | 1_1:-77291431 | Msa0045370:CDS |
| CAATATCATTCCAAGAAATA+TGG | 0.263470 | 1_1:+77295962 | None:intergenic |
| GAAGACAATGTGCTTCATTA+TGG | 0.339430 | 1_1:+77295251 | None:intergenic |
| AGATTCAATGTAGGAAGTTT+GGG | 0.340685 | 1_1:-77295221 | Msa0045370:CDS |
| CCAAGGACCTTCAAAATTCA+TGG | 0.370264 | 1_1:-77295714 | Msa0045370:CDS |
| GAAAGAAACTTACTGAAAAC+TGG | 0.383534 | 1_1:-77295503 | Msa0045370:CDS |
| TTGTCTACCTCATCGTTCTT+GGG | 0.388218 | 1_1:+77295291 | None:intergenic |
| CCATACTATGATCATGGAGT+TGG | 0.413274 | 1_1:-77296006 | None:intergenic |
| GCCTTGCCAGTGCAAGTCAT+TGG | 0.416701 | 1_1:+77295663 | None:intergenic |
| CAATTTCCATACTATGATCA+TGG | 0.416957 | 1_1:-77296012 | None:intergenic |
| ATTCAGCCCCTCGGACGAAA+TGG | 0.419706 | 1_1:-77295870 | Msa0045370:CDS |
| GGAGGTAGTGGTGATGGTGG+TGG | 0.428940 | 1_1:+77295837 | None:intergenic |
| AACAGCGTTTACTTGAAGTA+AGG | 0.430526 | 1_1:-77295194 | Msa0045370:CDS |
| GGAGGTGGAGGTAGTGGTGA+TGG | 0.438073 | 1_1:+77295831 | None:intergenic |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+77292231 | None:intergenic |
| ATCATGTATCTATTAACAAT+TGG | 0.445466 | 1_1:-77295452 | Msa0045370:CDS |
| AAATCAAATGACGGGACATA+TGG | 0.448815 | 1_1:+77295807 | None:intergenic |
| TATGGAGGAGGTGGAGGTAG+TGG | 0.449115 | 1_1:+77295825 | None:intergenic |
| CATACTATGATCATGGAGTT+GGG | 0.450184 | 1_1:-77296005 | None:intergenic |
| GCCAAATTTAATAAAGCAGC+AGG | 0.452261 | 1_1:-77295481 | Msa0045370:CDS |
| TAGTCAATGAAGACAGCGTT+TGG | 0.456859 | 1_1:-77291455 | Msa0045370:CDS |
| ACAATTGGCTATTCTGGAGT+AGG | 0.475606 | 1_1:-77295437 | Msa0045370:CDS |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 1_1:+77292238 | None:intergenic |
| GGGACATATGGAGGAGGTGG+AGG | 0.489705 | 1_1:+77295819 | None:intergenic |
| GACGGGACATATGGAGGAGG+TGG | 0.492749 | 1_1:+77295816 | None:intergenic |
| TGTTTATGTTCTCTCTAACA+TGG | 0.497894 | 1_1:-77295785 | Msa0045370:CDS |
| GGTGGAGGTAGTGGTGATGG+TGG | 0.508338 | 1_1:+77295834 | None:intergenic |
| GGCTATTCTGGAGTAGGGAA+TGG | 0.510092 | 1_1:-77295431 | Msa0045370:CDS |
| TCCTACATTGAATCTGTGGC+TGG | 0.517348 | 1_1:+77295229 | None:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 1_1:-77291350 | Msa0045370:CDS |
| TCTGGAGTAGGGAATGGAAC+AGG | 0.519444 | 1_1:-77295425 | Msa0045370:CDS |
| CAATTGGCTATTCTGGAGTA+GGG | 0.525537 | 1_1:-77295436 | Msa0045370:CDS |
| CCTTCAAAATTCATGGGCTA+TGG | 0.525874 | 1_1:-77295707 | Msa0045370:CDS |
| TCTTCCGAGAGGCTGAATAG+TGG | 0.532726 | 1_1:+77295899 | None:intergenic |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | 1_1:-77291290 | Msa0045370:CDS |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | 1_1:+77292184 | None:intergenic |
| TCAGAACCAATGACTTGCAC+TGG | 0.534469 | 1_1:-77295669 | Msa0045370:CDS |
| CCGAGAGGCTGAATAGTGGT+AGG | 0.539520 | 1_1:+77295903 | None:intergenic |
| ACCGTCGATCTTGCAAAATG+TGG | 0.545122 | 1_1:+77295758 | None:intergenic |
| ACATAAACAAATCAAATGAC+GGG | 0.547951 | 1_1:+77295799 | None:intergenic |
| AACATAAACAAATCAAATGA+CGG | 0.553312 | 1_1:+77295798 | None:intergenic |
| ACCAATGACTTGCACTGGCA+AGG | 0.561773 | 1_1:-77295664 | Msa0045370:CDS |
| GGTAGACAAAGAAGACATGT+TGG | 0.579947 | 1_1:-77295277 | Msa0045370:CDS |
| CAAGGACCTTCAAAATTCAT+GGG | 0.588081 | 1_1:-77295713 | Msa0045370:CDS |
| GAACAGGCATGGAACATGCT+CGG | 0.589801 | 1_1:-77295409 | Msa0045370:CDS |
| CCGTCGATCTTGCAAAATGT+GGG | 0.597550 | 1_1:+77295759 | None:intergenic |
| AACTTCCTACATTGAATCTG+TGG | 0.598001 | 1_1:+77295225 | None:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | 1_1:-77292184 | Msa0045370:intron |
| TAACTCACCATGTTTATGCA+AGG | 0.601403 | 1_1:-77295929 | Msa0045370:CDS |
| AACTCACCATGTTTATGCAA+GGG | 0.605338 | 1_1:-77295928 | Msa0045370:CDS |
| CGAGAGGCTGAATAGTGGTA+GGG | 0.610425 | 1_1:+77295904 | None:intergenic |
| TCAAATGACGGGACATATGG+AGG | 0.613975 | 1_1:+77295810 | None:intergenic |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | 1_1:+77292189 | None:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 1_1:+77291335 | None:intergenic |
| AGTAGGGAATGGAACAGGCA+TGG | 0.625843 | 1_1:-77295420 | Msa0045370:CDS |
| ATGAACTACCTTAAAGCTGA+GGG | 0.629017 | 1_1:-77295321 | Msa0045370:CDS |
| CATGAACTACCTTAAAGCTG+AGG | 0.634907 | 1_1:-77295322 | Msa0045370:CDS |
| AATGTATAGATCAAGTGCCA+AGG | 0.635818 | 1_1:-77295731 | Msa0045370:CDS |
| TCCAGCCACAGATTCAATGT+AGG | 0.640140 | 1_1:-77295230 | Msa0045370:CDS |
| AGAAATACTATTCAGCCCCT+CGG | 0.644925 | 1_1:-77295879 | Msa0045370:CDS |
| CAAAGTATTCGTTTGCATCG+AGG | 0.647560 | 1_1:+77295379 | None:intergenic |
| TAGGGTCCCTTGCATAAACA+TGG | 0.652145 | 1_1:+77295922 | None:intergenic |
| TGCAAACGAATACTTTGCAG+TGG | 0.654740 | 1_1:-77295373 | Msa0045370:CDS |
| CCTACCACTATTCAGCCTCT+CGG | 0.656651 | 1_1:-77295903 | Msa0045370:CDS |
| AATGACGGGACATATGGAGG+AGG | 0.664965 | 1_1:+77295813 | None:intergenic |
| TCGATCTTGCAAAATGTGGG+AGG | 0.671506 | 1_1:+77295762 | None:intergenic |
| CAGGCATGGAACATGCTCGG+CGG | 0.681296 | 1_1:-77295406 | Msa0045370:CDS |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 1_1:+77292239 | None:intergenic |
| AATTCTAGAGTGATATACCA+AGG | 0.688891 | 1_1:+77291273 | None:intergenic |
| TGAATAGTATTTCTTCCGAG+AGG | 0.694559 | 1_1:+77295888 | None:intergenic |
| CATTGAACCCAAGAACGATG+AGG | 0.720821 | 1_1:-77295298 | Msa0045370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATACTTGTT+TGG | - | chr1_1:77292254-77292273 | Msa0045370:CDS | 10.0% |
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr1_1:77292358-77292377 | None:intergenic | 10.0% |
| !!! | ATATTTTAATTGAGAAAATT+GGG | - | chr1_1:77293437-77293456 | Msa0045370:intron | 10.0% |
| !!! | AAATTTGTCATATAGTTTTA+CGG | + | chr1_1:77291929-77291948 | None:intergenic | 15.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr1_1:77292453-77292472 | Msa0045370:intron | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr1_1:77293135-77293154 | Msa0045370:intron | 15.0% |
| !!! | CATATTTTAATTGAGAAAAT+TGG | - | chr1_1:77293436-77293455 | Msa0045370:intron | 15.0% |
| !!! | AAATATTTTGAATTCGATTT+GGG | + | chr1_1:77293596-77293615 | None:intergenic | 15.0% |
| !!! | AAAATATTTTGAATTCGATT+TGG | + | chr1_1:77293597-77293616 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTCTGTTTACTT+TGG | - | chr1_1:77293942-77293961 | Msa0045370:intron | 15.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:77294904-77294923 | None:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:77295204-77295223 | Msa0045370:CDS | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:77295205-77295224 | Msa0045370:CDS | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:77295240-77295259 | Msa0045370:CDS | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:77295396-77295415 | None:intergenic | 15.0% |
| !! | AACATAAACAAATCAAATGA+CGG | + | chr1_1:77291481-77291500 | None:intergenic | 20.0% |
| !! | ATCATGTATCTATTAACAAT+TGG | - | chr1_1:77291824-77291843 | Msa0045370:intron | 20.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr1_1:77292548-77292567 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr1_1:77292615-77292634 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr1_1:77292817-77292836 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATTCGATTTG+GGG | + | chr1_1:77293595-77293614 | None:intergenic | 20.0% |
| !! | AATATACACCATATATGAAT+CGG | + | chr1_1:77293846-77293865 | None:intergenic | 20.0% |
| !! | TTCATATATGGTGTATATTT+AGG | - | chr1_1:77293847-77293866 | Msa0045370:intron | 20.0% |
| !!! | ACTTATTGTTAAGGAAATTT+TGG | - | chr1_1:77294013-77294032 | Msa0045370:intron | 20.0% |
| !! | TTAGATGTAATCATCATTAA+AGG | - | chr1_1:77294200-77294219 | Msa0045370:intron | 20.0% |
| !! | TAGATGTAATCATCATTAAA+GGG | - | chr1_1:77294201-77294220 | Msa0045370:intron | 20.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | chr1_1:77294973-77294992 | None:intergenic | 20.0% |
| ! | CAATATCATTCCAAGAAATA+TGG | + | chr1_1:77291317-77291336 | None:intergenic | 25.0% |
| ! | ACATAAACAAATCAAATGAC+GGG | + | chr1_1:77291480-77291499 | None:intergenic | 25.0% |
| !!! | GGTTCTGAGTTTTTTTTATT+GGG | + | chr1_1:77291595-77291614 | None:intergenic | 25.0% |
| !!! | TGGTTCTGAGTTTTTTTTAT+TGG | + | chr1_1:77291596-77291615 | None:intergenic | 25.0% |
| !! | TCTTCAGATTCTGAAAAATT+CGG | - | chr1_1:77291750-77291769 | Msa0045370:intron | 25.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr1_1:77292613-77292632 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr1_1:77292614-77292633 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr1_1:77292649-77292668 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr1_1:77292650-77292669 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr1_1:77292747-77292766 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr1_1:77292748-77292767 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr1_1:77292818-77292837 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr1_1:77292816-77292835 | Msa0045370:intron | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr1_1:77292900-77292919 | None:intergenic | 25.0% |
| ! | TTAATTGAGAAAATTGGGTT+TGG | - | chr1_1:77293442-77293461 | Msa0045370:intron | 25.0% |
| !!! | TTTTAATTTTTGTGCTGAAG+TGG | - | chr1_1:77293487-77293506 | Msa0045370:intron | 25.0% |
| ! | AATAAACAAAAGGAAGAAAG+AGG | + | chr1_1:77293922-77293941 | None:intergenic | 25.0% |
| ! | GGATGATATACTTATTGTTA+AGG | - | chr1_1:77294004-77294023 | Msa0045370:intron | 25.0% |
| ! | AATTAGATATCAGTTGCTAA+AGG | - | chr1_1:77294101-77294120 | Msa0045370:intron | 25.0% |
| ! | ATTCCTAGATATGAGAAAAT+GGG | + | chr1_1:77294140-77294159 | None:intergenic | 25.0% |
| ! | TATTCCTAGATATGAGAAAA+TGG | + | chr1_1:77294141-77294160 | None:intergenic | 25.0% |
| ! | TTCCACAGATTTCAAATAAT+AGG | + | chr1_1:77294175-77294194 | None:intergenic | 25.0% |
| ! | TTCATGTTTGTTCTTTAGTT+TGG | - | chr1_1:77294367-77294386 | Msa0045370:intron | 25.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | chr1_1:77294524-77294543 | None:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | chr1_1:77294611-77294630 | None:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | chr1_1:77294612-77294631 | None:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | chr1_1:77294635-77294654 | Msa0045370:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | chr1_1:77294659-77294678 | Msa0045370:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | chr1_1:77294660-77294679 | Msa0045370:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | chr1_1:77294709-77294728 | Msa0045370:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | chr1_1:77294842-77294861 | None:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | chr1_1:77294843-77294862 | None:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | chr1_1:77294974-77294993 | None:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:77295143-77295162 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | chr1_1:77295187-77295206 | None:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | chr1_1:77295243-77295262 | Msa0045370:CDS | 25.0% |
| ! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:77295524-77295543 | None:intergenic | 25.0% |
| ! | AAAGAAATTGTTGTAGATGA+AGG | + | chr1_1:77295635-77295654 | None:intergenic | 25.0% |
| !! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:77295811-77295830 | None:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:77295845-77295864 | Msa0045370:CDS | 25.0% |
| TTACTCTTCACCATATTTCT+TGG | - | chr1_1:77291304-77291323 | Msa0045370:CDS | 30.0% | |
| TGTTTATGTTCTCTCTAACA+TGG | - | chr1_1:77291491-77291510 | Msa0045370:intron | 30.0% | |
| ! | CTTCAGATTCTGAAAAATTC+GGG | - | chr1_1:77291751-77291770 | Msa0045370:intron | 30.0% |
| GAAAGAAACTTACTGAAAAC+TGG | - | chr1_1:77291773-77291792 | Msa0045370:intron | 30.0% | |
| !! | TCCTGCTGCTTTATTAAATT+TGG | + | chr1_1:77291799-77291818 | None:intergenic | 30.0% |
| CTATTAACAATTGGCTATTC+TGG | - | chr1_1:77291833-77291852 | Msa0045370:intron | 30.0% | |
| AGATTCAATGTAGGAAGTTT+GGG | - | chr1_1:77292055-77292074 | Msa0045370:intron | 30.0% | |
| TCCAATTTAAATACGATGAG+TGG | - | chr1_1:77292288-77292307 | Msa0045370:intron | 30.0% | |
| TCCACTCATCGTATTTAAAT+TGG | + | chr1_1:77292292-77292311 | None:intergenic | 30.0% | |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr1_1:77292683-77292702 | Msa0045370:intron | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr1_1:77292716-77292735 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr1_1:77292746-77292765 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr1_1:77292792-77292811 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr1_1:77292793-77292812 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr1_1:77292855-77292874 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr1_1:77293176-77293195 | Msa0045370:intron | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr1_1:77293241-77293260 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr1_1:77293264-77293283 | Msa0045370:intron | 30.0% | |
| CAGTATTTGAGTAACATAAC+CGG | + | chr1_1:77293751-77293770 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTCTGTCTCATTC+TGG | - | chr1_1:77293884-77293903 | Msa0045370:intron | 30.0% |
| TGTATGACGTAAATTGATGT+TGG | - | chr1_1:77293968-77293987 | Msa0045370:intron | 30.0% | |
| !! | GATGTTGGTAATTTACACAA+CGG | - | chr1_1:77293983-77294002 | Msa0045370:intron | 30.0% |
| ATGAGAAAATGGGAGAAAAA+AGG | + | chr1_1:77294130-77294149 | None:intergenic | 30.0% | |
| ! | GTCCTATTATTTGAAATCTG+TGG | - | chr1_1:77294170-77294189 | Msa0045370:intron | 30.0% |
| !!! | ATAGACTTTTAGCTCATCTT+GGG | - | chr1_1:77294312-77294331 | Msa0045370:intron | 30.0% |
| !! | ATGTTTGTTCTTTAGTTTGG+TGG | - | chr1_1:77294370-77294389 | Msa0045370:intron | 30.0% |
| ! | TAAACTAGGCTTTGTAAACA+TGG | + | chr1_1:77294440-77294459 | None:intergenic | 30.0% |
| CTGATAGTTTACATACTGAA+TGG | - | chr1_1:77294634-77294653 | Msa0045370:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | chr1_1:77294636-77294655 | Msa0045370:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | chr1_1:77294671-77294690 | Msa0045370:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | chr1_1:77294672-77294691 | Msa0045370:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | chr1_1:77294707-77294726 | None:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | chr1_1:77294708-77294727 | None:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | chr1_1:77294708-77294727 | Msa0045370:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | chr1_1:77294710-77294729 | Msa0045370:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | chr1_1:77294841-77294860 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:77295048-77295067 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:77295049-77295068 | Msa0045370:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:77295377-77295396 | None:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | chr1_1:77295426-77295445 | Msa0045370:CDS | 30.0% | |
| TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:77295609-77295628 | None:intergenic | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:77295647-77295666 | Msa0045370:CDS | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:77295670-77295689 | Msa0045370:CDS | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:77295671-77295690 | Msa0045370:CDS | 30.0% | |
| ! | CTATGATTTTCTCTGAACTT+TGG | - | chr1_1:77295756-77295775 | Msa0045370:CDS | 30.0% |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:77295970-77295989 | None:intergenic | 30.0% |
| TAACTCACCATGTTTATGCA+AGG | - | chr1_1:77291347-77291366 | Msa0045370:CDS | 35.0% | |
| AACTCACCATGTTTATGCAA+GGG | - | chr1_1:77291348-77291367 | Msa0045370:CDS | 35.0% | |
| TGAATAGTATTTCTTCCGAG+AGG | + | chr1_1:77291391-77291410 | None:intergenic | 35.0% | |
| ! | AAATCAAATGACGGGACATA+TGG | + | chr1_1:77291472-77291491 | None:intergenic | 35.0% |
| AATGTATAGATCAAGTGCCA+AGG | - | chr1_1:77291545-77291564 | Msa0045370:intron | 35.0% | |
| CAAGGACCTTCAAAATTCAT+GGG | - | chr1_1:77291563-77291582 | Msa0045370:intron | 35.0% | |
| GCCAAATTTAATAAAGCAGC+AGG | - | chr1_1:77291795-77291814 | Msa0045370:intron | 35.0% | |
| ATGAACTACCTTAAAGCTGA+GGG | - | chr1_1:77291955-77291974 | Msa0045370:intron | 35.0% | |
| GAAGACAATGTGCTTCATTA+TGG | + | chr1_1:77292028-77292047 | None:intergenic | 35.0% | |
| AACTTCCTACATTGAATCTG+TGG | + | chr1_1:77292054-77292073 | None:intergenic | 35.0% | |
| CAGATTCAATGTAGGAAGTT+TGG | - | chr1_1:77292054-77292073 | Msa0045370:intron | 35.0% | |
| AACAGCGTTTACTTGAAGTA+AGG | - | chr1_1:77292082-77292101 | Msa0045370:intron | 35.0% | |
| ! | CTGTCACAACTTTTGTATGT+CGG | + | chr1_1:77292132-77292151 | None:intergenic | 35.0% |
| CAGAATATTATGCTCTTCTC+TGG | + | chr1_1:77292171-77292190 | None:intergenic | 35.0% | |
| TTTAAATACGATGAGTGGAG+TGG | - | chr1_1:77292293-77292312 | Msa0045370:intron | 35.0% | |
| TCAAAATTGCACCTTGAATG+CGG | + | chr1_1:77292680-77292699 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr1_1:77292758-77292777 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr1_1:77292845-77292864 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr1_1:77292910-77292929 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr1_1:77293093-77293112 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr1_1:77293164-77293183 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr1_1:77293165-77293184 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr1_1:77293267-77293286 | Msa0045370:intron | 35.0% | |
| AACATTTAGCAAACAAGCAC+CGG | + | chr1_1:77293380-77293399 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAACTTG+TGG | - | chr1_1:77293629-77293648 | Msa0045370:intron | 35.0% | |
| !! | AGAAGCATTTGAATTTCGCA+GGG | + | chr1_1:77293723-77293742 | None:intergenic | 35.0% |
| !! | AAGAAGCATTTGAATTTCGC+AGG | + | chr1_1:77293724-77293743 | None:intergenic | 35.0% |
| ATTCAAATGCTTCTTCTCTC+CGG | - | chr1_1:77293729-77293748 | Msa0045370:intron | 35.0% | |
| ATTGTATGCTAGACACTTAG+GGG | + | chr1_1:77293799-77293818 | None:intergenic | 35.0% | |
| GATTGTATGCTAGACACTTA+GGG | + | chr1_1:77293800-77293819 | None:intergenic | 35.0% | |
| AGATTGTATGCTAGACACTT+AGG | + | chr1_1:77293801-77293820 | None:intergenic | 35.0% | |
| CGGTGAAGTCTAAGAAATAA+AGG | + | chr1_1:77293826-77293845 | None:intergenic | 35.0% | |
| !! | AGACTTCACCGATTCATATA+TGG | - | chr1_1:77293835-77293854 | Msa0045370:intron | 35.0% |
| !! | GTTAAGGAAATTTTGGTCTC+TGG | - | chr1_1:77294020-77294039 | Msa0045370:intron | 35.0% |
| TAGATATCAGTTGCTAAAGG+TGG | - | chr1_1:77294104-77294123 | Msa0045370:intron | 35.0% | |
| ! | TCTCCCATTTTCTCATATCT+AGG | - | chr1_1:77294134-77294153 | Msa0045370:intron | 35.0% |
| !!! | TGGGGCATATTCGTTTTTTT+GGG | + | chr1_1:77294231-77294250 | None:intergenic | 35.0% |
| !!! | ATGGGGCATATTCGTTTTTT+TGG | + | chr1_1:77294232-77294251 | None:intergenic | 35.0% |
| ! | TGATGATAATTTGTGGCGAA+AGG | + | chr1_1:77294261-77294280 | None:intergenic | 35.0% |
| !! | GCTGGTTTGATGATAATTTG+TGG | + | chr1_1:77294268-77294287 | None:intergenic | 35.0% |
| TCTATCCATGGTAAATGAGT+GGG | + | chr1_1:77294297-77294316 | None:intergenic | 35.0% | |
| ATGAGCTAAAAGTCTATCCA+TGG | + | chr1_1:77294309-77294328 | None:intergenic | 35.0% | |
| !!! | GATAGACTTTTAGCTCATCT+TGG | - | chr1_1:77294311-77294330 | Msa0045370:intron | 35.0% |
| !! | AGGCTTTGTAAACATGGTTT+TGG | + | chr1_1:77294434-77294453 | None:intergenic | 35.0% |
| ACAAAGCCTAGTTTACAACT+TGG | - | chr1_1:77294445-77294464 | Msa0045370:intron | 35.0% | |
| CAAAGCCTAGTTTACAACTT+GGG | - | chr1_1:77294446-77294465 | Msa0045370:intron | 35.0% | |
| TAGATCCCAAGTTGTAAACT+AGG | + | chr1_1:77294454-77294473 | None:intergenic | 35.0% | |
| GGGAAAGTGAAAGAGAAATA+GGG | + | chr1_1:77294591-77294610 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | chr1_1:77294592-77294611 | None:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | chr1_1:77294593-77294612 | Msa0045370:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:77295563-77295582 | Msa0045370:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:77295564-77295583 | Msa0045370:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:77295659-77295678 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:77295912-77295931 | Msa0045370:CDS | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | chr1_1:77295986-77296005 | Msa0045370:CDS | 35.0% | |
| AGAAATACTATTCAGCCCCT+CGG | - | chr1_1:77291397-77291416 | Msa0045370:CDS | 40.0% | |
| ! | TCTTTTTCCATTTCGTCCGA+GGG | + | chr1_1:77291416-77291435 | None:intergenic | 40.0% |
| !! | CCATGAATTTTGAAGGTCCT+TGG | + | chr1_1:77291565-77291584 | None:intergenic | 40.0% |
| CCAAGGACCTTCAAAATTCA+TGG | - | chr1_1:77291562-77291581 | Msa0045370:intron | 40.0% | |
| ! | CCATAGCCCATGAATTTTGA+AGG | + | chr1_1:77291572-77291591 | None:intergenic | 40.0% |
| ! | CCTTCAAAATTCATGGGCTA+TGG | - | chr1_1:77291569-77291588 | Msa0045370:intron | 40.0% |
| !! | ACAATTGGCTATTCTGGAGT+AGG | - | chr1_1:77291839-77291858 | Msa0045370:intron | 40.0% |
| !! | CAATTGGCTATTCTGGAGTA+GGG | - | chr1_1:77291840-77291859 | Msa0045370:intron | 40.0% |
| ! | CAAAGTATTCGTTTGCATCG+AGG | + | chr1_1:77291900-77291919 | None:intergenic | 40.0% |
| TGCAAACGAATACTTTGCAG+TGG | - | chr1_1:77291903-77291922 | Msa0045370:intron | 40.0% | |
| CATGAACTACCTTAAAGCTG+AGG | - | chr1_1:77291954-77291973 | Msa0045370:intron | 40.0% | |
| TTGTCTACCTCATCGTTCTT+GGG | + | chr1_1:77291988-77292007 | None:intergenic | 40.0% | |
| TTTGTCTACCTCATCGTTCT+TGG | + | chr1_1:77291989-77292008 | None:intergenic | 40.0% | |
| GGTAGACAAAGAAGACATGT+TGG | - | chr1_1:77291999-77292018 | Msa0045370:intron | 40.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr1_1:77292777-77292796 | Msa0045370:intron | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr1_1:77292786-77292805 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr1_1:77292871-77292890 | Msa0045370:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr1_1:77292885-77292904 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr1_1:77293046-77293065 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr1_1:77293047-77293066 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGAATAGCTCCCTC+CGG | - | chr1_1:77293358-77293377 | Msa0045370:intron | 40.0% |
| !! | TGCCACATTTGAGCTGATTT+TGG | - | chr1_1:77293514-77293533 | Msa0045370:intron | 40.0% |
| CACCAAAATCAGCTCAAATG+TGG | + | chr1_1:77293519-77293538 | None:intergenic | 40.0% | |
| CTGGATTGTAACATGAGGAA+AGG | - | chr1_1:77294039-77294058 | Msa0045370:intron | 40.0% | |
| !! | GAGGAAAGGAGAAGCATTAT+AGG | - | chr1_1:77294053-77294072 | Msa0045370:intron | 40.0% |
| !!! | GGCATATTCGTTTTTTTGGG+TGG | + | chr1_1:77294228-77294247 | None:intergenic | 40.0% |
| ! | GATAATTTGTGGCGAAAGGT+TGG | + | chr1_1:77294257-77294276 | None:intergenic | 40.0% |
| GTCTATCCATGGTAAATGAG+TGG | + | chr1_1:77294298-77294317 | None:intergenic | 40.0% | |
| ATGCCCCATCAAAATTTAGC+AGG | + | chr1_1:77294716-77294735 | None:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | chr1_1:77294717-77294736 | Msa0045370:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | chr1_1:77294808-77294827 | None:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | chr1_1:77294815-77294834 | Msa0045370:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | chr1_1:77294959-77294978 | None:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:77295040-77295059 | None:intergenic | 40.0% | |
| TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:77295821-77295840 | Msa0045370:CDS | 40.0% | |
| TAGGGTCCCTTGCATAAACA+TGG | + | chr1_1:77291357-77291376 | None:intergenic | 45.0% | |
| ! | CTTTTTCCATTTCGTCCGAG+GGG | + | chr1_1:77291415-77291434 | None:intergenic | 45.0% |
| ! | GTCTTTTTCCATTTCGTCCG+AGG | + | chr1_1:77291417-77291436 | None:intergenic | 45.0% |
| ! | TCAAATGACGGGACATATGG+AGG | + | chr1_1:77291469-77291488 | None:intergenic | 45.0% |
| TCGATCTTGCAAAATGTGGG+AGG | + | chr1_1:77291517-77291536 | None:intergenic | 45.0% | |
| CCGTCGATCTTGCAAAATGT+GGG | + | chr1_1:77291520-77291539 | None:intergenic | 45.0% | |
| ! | CCCACATTTTGCAAGATCGA+CGG | - | chr1_1:77291517-77291536 | Msa0045370:intron | 45.0% |
| ACCGTCGATCTTGCAAAATG+TGG | + | chr1_1:77291521-77291540 | None:intergenic | 45.0% | |
| ! | TCAGAACCAATGACTTGCAC+TGG | - | chr1_1:77291607-77291626 | Msa0045370:intron | 45.0% |
| GTTCAATGCCCTCAGCTTTA+AGG | + | chr1_1:77291966-77291985 | None:intergenic | 45.0% | |
| CATTGAACCCAAGAACGATG+AGG | - | chr1_1:77291978-77291997 | Msa0045370:intron | 45.0% | |
| TCCAGCCACAGATTCAATGT+AGG | - | chr1_1:77292046-77292065 | Msa0045370:intron | 45.0% | |
| TCCTACATTGAATCTGTGGC+TGG | + | chr1_1:77292050-77292069 | None:intergenic | 45.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr1_1:77292606-77292625 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr1_1:77292666-77292685 | Msa0045370:intron | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr1_1:77292709-77292728 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr1_1:77292892-77292911 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr1_1:77292999-77293018 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr1_1:77293009-77293028 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr1_1:77293018-77293037 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr1_1:77293037-77293056 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr1_1:77293071-77293090 | Msa0045370:intron | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr1_1:77293299-77293318 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr1_1:77293300-77293319 | None:intergenic | 45.0% | |
| !! | TTTAGCAAACAAGCACCGGA+GGG | + | chr1_1:77293376-77293395 | None:intergenic | 45.0% |
| !! | ATTTAGCAAACAAGCACCGG+AGG | + | chr1_1:77293377-77293396 | None:intergenic | 45.0% |
| !! | TCGATTTGGGGCTTGTGTTA+TGG | + | chr1_1:77293583-77293602 | None:intergenic | 45.0% |
| GGTCTCTGGATTGTAACATG+AGG | - | chr1_1:77294034-77294053 | Msa0045370:intron | 45.0% | |
| TCCATGGTAAATGAGTGGGT+GGG | + | chr1_1:77294293-77294312 | None:intergenic | 45.0% | |
| ATCCATGGTAAATGAGTGGG+TGG | + | chr1_1:77294294-77294313 | None:intergenic | 45.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | chr1_1:77294720-77294739 | Msa0045370:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | chr1_1:77294721-77294740 | Msa0045370:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | chr1_1:77294831-77294850 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:77295041-77295060 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | chr1_1:77295095-77295114 | None:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | chr1_1:77295092-77295111 | Msa0045370:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:77295099-77295118 | Msa0045370:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr1_1:77295292-77295311 | None:intergenic | 45.0% | |
| ! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:77295507-77295526 | None:intergenic | 45.0% |
| ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:77295691-77295710 | None:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:77295944-77295963 | None:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:77295941-77295960 | Msa0045370:CDS | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:77295944-77295963 | Msa0045370:CDS | 45.0% |
| !! | AAAATTAAAAAATAAACAAA+AGG | + | chr1_1:77293932-77293951 | None:intergenic | 5.0% |
| CGAGAGGCTGAATAGTGGTA+GGG | + | chr1_1:77291375-77291394 | None:intergenic | 50.0% | |
| CCTACCACTATTCAGCCTCT+CGG | - | chr1_1:77291373-77291392 | Msa0045370:CDS | 50.0% | |
| TCTTCCGAGAGGCTGAATAG+TGG | + | chr1_1:77291380-77291399 | None:intergenic | 50.0% | |
| ! | AATGACGGGACATATGGAGG+AGG | + | chr1_1:77291466-77291485 | None:intergenic | 50.0% |
| ! | ACCAATGACTTGCACTGGCA+AGG | - | chr1_1:77291612-77291631 | Msa0045370:intron | 50.0% |
| !! | GGCTATTCTGGAGTAGGGAA+TGG | - | chr1_1:77291845-77291864 | Msa0045370:intron | 50.0% |
| ! | TCTGGAGTAGGGAATGGAAC+AGG | - | chr1_1:77291851-77291870 | Msa0045370:intron | 50.0% |
| AGTAGGGAATGGAACAGGCA+TGG | - | chr1_1:77291856-77291875 | Msa0045370:intron | 50.0% | |
| GAACAGGCATGGAACATGCT+CGG | - | chr1_1:77291867-77291886 | Msa0045370:intron | 50.0% | |
| TACAAACTATCGGGGTGTGC+GGG | + | chr1_1:77292605-77292624 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr1_1:77292922-77292941 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr1_1:77292958-77292977 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr1_1:77292969-77292988 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr1_1:77292970-77292989 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr1_1:77293000-77293019 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr1_1:77293003-77293022 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr1_1:77293282-77293301 | Msa0045370:intron | 50.0% |
| TGTGGCGAAAGGTTGGAGAT+GGG | + | chr1_1:77294250-77294269 | None:intergenic | 50.0% | |
| TTGTGGCGAAAGGTTGGAGA+TGG | + | chr1_1:77294251-77294270 | None:intergenic | 50.0% | |
| CCATGGTAAATGAGTGGGTG+GGG | + | chr1_1:77294292-77294311 | None:intergenic | 50.0% | |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | chr1_1:77295090-77295109 | None:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:77295274-77295293 | Msa0045370:CDS | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:77295926-77295945 | Msa0045370:CDS | 50.0% |
| CCGAGAGGCTGAATAGTGGT+AGG | + | chr1_1:77291376-77291395 | None:intergenic | 55.0% | |
| ATTCAGCCCCTCGGACGAAA+TGG | - | chr1_1:77291406-77291425 | Msa0045370:CDS | 55.0% | |
| TATGGAGGAGGTGGAGGTAG+TGG | + | chr1_1:77291454-77291473 | None:intergenic | 55.0% | |
| GCCTTGCCAGTGCAAGTCAT+TGG | + | chr1_1:77291616-77291635 | None:intergenic | 55.0% | |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr1_1:77292923-77292942 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr1_1:77292955-77292974 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr1_1:77292980-77292999 | None:intergenic | 55.0% | |
| GTGGCGAAAGGTTGGAGATG+GGG | + | chr1_1:77294249-77294268 | None:intergenic | 55.0% | |
| TAAATGAGTGGGTGGGGAGC+TGG | + | chr1_1:77294286-77294305 | None:intergenic | 55.0% | |
| CCCCACCCACTCATTTACCA+TGG | - | chr1_1:77294289-77294308 | Msa0045370:intron | 55.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | chr1_1:77295257-77295276 | Msa0045370:CDS | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:77295273-77295292 | Msa0045370:CDS | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:77295281-77295300 | Msa0045370:CDS | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:77295282-77295301 | Msa0045370:CDS | 55.0% |
| !! | GGAGGTAGTGGTGATGGTGG+TGG | + | chr1_1:77291442-77291461 | None:intergenic | 60.0% |
| !! | GGTGGAGGTAGTGGTGATGG+TGG | + | chr1_1:77291445-77291464 | None:intergenic | 60.0% |
| ! | GGAGGTGGAGGTAGTGGTGA+TGG | + | chr1_1:77291448-77291467 | None:intergenic | 60.0% |
| GGGACATATGGAGGAGGTGG+AGG | + | chr1_1:77291460-77291479 | None:intergenic | 60.0% | |
| GACGGGACATATGGAGGAGG+TGG | + | chr1_1:77291463-77291482 | None:intergenic | 60.0% | |
| CAGGCATGGAACATGCTCGG+CGG | - | chr1_1:77291870-77291889 | Msa0045370:intron | 60.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr1_1:77292600-77292619 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr1_1:77292596-77292615 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr1_1:77292597-77292616 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr1_1:77292931-77292950 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr1_1:77292951-77292970 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr1_1:77292952-77292971 | None:intergenic | 65.0% |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr1_1:77292594-77292613 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr1_1:77292595-77292614 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr1_1:77292939-77292958 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr1_1:77292940-77292959 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr1_1:77292948-77292967 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77291277 | 77296021 | 77291277 | ID=Msa0045370;Name=Msa0045370 |
| chr1_1 | mRNA | 77291277 | 77296021 | 77291277 | ID=Msa0045370-mRNA-1;Parent=Msa0045370;Name=Msa0045370-mRNA-1;_AED=0.87;_eAED=0.93;_QI=0|0|0.25|0.5|0.66|1|4|0|365 |
| chr1_1 | exon | 77295638 | 77296021 | 77295638 | ID=Msa0045370-mRNA-1:exon:26435;Parent=Msa0045370-mRNA-1 |
| chr1_1 | exon | 77295148 | 77295541 | 77295148 | ID=Msa0045370-mRNA-1:exon:26434;Parent=Msa0045370-mRNA-1 |
| chr1_1 | exon | 77292185 | 77292306 | 77292185 | ID=Msa0045370-mRNA-1:exon:26433;Parent=Msa0045370-mRNA-1 |
| chr1_1 | exon | 77291277 | 77291474 | 77291277 | ID=Msa0045370-mRNA-1:exon:26432;Parent=Msa0045370-mRNA-1 |
| chr1_1 | CDS | 77295638 | 77296021 | 77295638 | ID=Msa0045370-mRNA-1:cds;Parent=Msa0045370-mRNA-1 |
| chr1_1 | CDS | 77295148 | 77295541 | 77295148 | ID=Msa0045370-mRNA-1:cds;Parent=Msa0045370-mRNA-1 |
| chr1_1 | CDS | 77292185 | 77292306 | 77292185 | ID=Msa0045370-mRNA-1:cds;Parent=Msa0045370-mRNA-1 |
| chr1_1 | CDS | 77291277 | 77291474 | 77291277 | ID=Msa0045370-mRNA-1:cds;Parent=Msa0045370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
