Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047420 | sp|B0G107|SAMH1_DICDI | 36.681 | 458 | 240 | 8 | 23 | 479 | 80 | 488 | 4.99e-94 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047420 | Msa0094940 | -0.807231 | 5.591193e-50 | -8.615850e-47 |
| Msa0047420 | Msa0226620 | -0.801367 | 9.309401e-49 | -8.615850e-47 |
| Msa0047420 | Msa0543900 | 0.808672 | 2.760166e-50 | -8.615850e-47 |
| Msa0047420 | Msa0599770 | 0.806242 | 9.048826e-50 | -8.615850e-47 |
| Msa0047420 | Msa0640380 | 0.822389 | 2.431134e-53 | -8.615850e-47 |
| Msa0047420 | Msa0663330 | 0.822031 | 2.943876e-53 | -8.615850e-47 |
| Msa0047420 | Msa0664020 | 0.821878 | 3.193757e-53 | -8.615850e-47 |
| Msa0047420 | Msa0678820 | 0.808682 | 2.747379e-50 | -8.615850e-47 |
| Msa0047420 | Msa0722930 | 0.809927 | 1.485785e-50 | -8.615850e-47 |
| Msa0047420 | Msa0723140 | 0.806730 | 7.137472e-50 | -8.615850e-47 |
| Msa0047420 | Msa0934820 | 0.986773 | 6.374145e-168 | -8.615850e-47 |
| Msa0047420 | Msa0991670 | 0.800187 | 1.621023e-48 | -8.615850e-47 |
| Msa0047420 | Msa1116130 | -0.805469 | 1.314848e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047420 | MtrunA17_Chr6g0450851 | 90.711 | 506 | 10 | 1 | 1 | 506 | 1 | 469 | 0.0 | 936 |
| Msa0047420 | MtrunA17_Chr5g0413651 | 64.386 | 497 | 130 | 4 | 6 | 502 | 140 | 589 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047420 | AT5G40270.1 | 66.339 | 508 | 129 | 2 | 1 | 503 | 1 | 471 | 0.0 | 716 |
| Msa0047420 | AT5G40290.1 | 63.895 | 493 | 131 | 3 | 1 | 493 | 1 | 446 | 0.0 | 653 |
| Msa0047420 | AT5G40270.2 | 65.127 | 433 | 109 | 2 | 1 | 428 | 1 | 396 | 0.0 | 594 |
Find 97 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATTCATACCTTTACTTT+TGG | 0.232143 | 1_1:+80209843 | None:intergenic |
| ACAGCAACAGCAACAGCAAT+GGG | 0.246435 | 1_1:-80214361 | Msa0047420:exon |
| TACCCTAGGTAGAGCAAATT+TGG | 0.248078 | 1_1:+80210518 | None:intergenic |
| TAACGGCGTTTCTTCTTATC+TGG | 0.262952 | 1_1:+80208301 | None:intergenic |
| GACTGTCGAGCTTGTGGTCT+GGG | 0.290979 | 1_1:-80210204 | Msa0047420:CDS |
| ACTTCTTCTATACTATAATA+AGG | 0.292164 | 1_1:+80208163 | None:intergenic |
| CTTGGAGTGTATTGGATTGC+TGG | 0.293833 | 1_1:-80211628 | Msa0047420:CDS |
| CTATTATCCTCATAGGTTAA+TGG | 0.298646 | 1_1:-80210064 | Msa0047420:CDS |
| TTAAATTCTATTATCCTCAT+AGG | 0.329767 | 1_1:-80210071 | Msa0047420:CDS |
| TATATGAAAACTGTCTCTTT+TGG | 0.336127 | 1_1:-80208242 | Msa0047420:three_prime_UTR |
| TGCTGTTCCAAAGGATATAA+TGG | 0.344410 | 1_1:-80209317 | Msa0047420:CDS |
| TTAACTTTACTGACCAGTTC+TGG | 0.345377 | 1_1:+80208474 | None:intergenic |
| CACTTGGCAGGAAATGATAT+TGG | 0.346945 | 1_1:-80210547 | Msa0047420:intron |
| AAATTGTCCATTATATCCTT+TGG | 0.347909 | 1_1:+80209310 | None:intergenic |
| TGAACAAATGTCGGTCAAAA+TGG | 0.351315 | 1_1:-80211064 | Msa0047420:CDS |
| TCCAAGAGAATGCTCAAATC+TGG | 0.360135 | 1_1:+80211645 | None:intergenic |
| TCTCTAGCTTCCTTCAGTTC+TGG | 0.362099 | 1_1:+80209493 | None:intergenic |
| AGCATTCTCTTGGAGTGTAT+TGG | 0.362528 | 1_1:-80211636 | Msa0047420:CDS |
| AAATGGTTGATTATATAGTT+GGG | 0.364892 | 1_1:-80211047 | Msa0047420:CDS |
| TGACTGTCGAGCTTGTGGTC+TGG | 0.371354 | 1_1:-80210205 | Msa0047420:CDS |
| AAAATGGTTGATTATATAGT+TGG | 0.373584 | 1_1:-80211048 | Msa0047420:CDS |
| TTCAAGATCCTGGTGAATAC+TGG | 0.381538 | 1_1:-80209659 | Msa0047420:CDS |
| TCGAAGGCGGGATCTCTATC+AGG | 0.384744 | 1_1:-80209455 | Msa0047420:intron |
| TTTCCAGGCAATGGATCTAA+TGG | 0.390662 | 1_1:-80209733 | Msa0047420:intron |
| CACGTTCATGATAACGTTCA+TGG | 0.394273 | 1_1:-80214274 | Msa0047420:CDS |
| AAGTAATAGATTCATTGATA+TGG | 0.394526 | 1_1:+80208028 | None:intergenic |
| TCCAGATTTGAGCATTCTCT+TGG | 0.396374 | 1_1:-80211646 | Msa0047420:CDS |
| AATGGAGACCATGCGGGTCT+TGG | 0.412433 | 1_1:-80210046 | Msa0047420:CDS |
| TTGTATGATATTGTTGCAAA+TGG | 0.413163 | 1_1:-80210346 | Msa0047420:CDS |
| ATTCAATCCGTGAAACTTGC+TGG | 0.415551 | 1_1:-80211447 | Msa0047420:intron |
| AAGTGGCTTATGCGCTCATC+AGG | 0.425422 | 1_1:+80208546 | None:intergenic |
| TGTGAGGGTCAATATCAATA+TGG | 0.429940 | 1_1:+80211019 | None:intergenic |
| CTTGTCAAGATATGATAGTA+AGG | 0.433285 | 1_1:-80208512 | Msa0047420:CDS |
| ATTGTTGCAAATGGACGAAA+TGG | 0.434367 | 1_1:-80210337 | Msa0047420:CDS |
| CTGAGAATCGCTGATAACTC+TGG | 0.442575 | 1_1:+80211279 | None:intergenic |
| TTCACACACTTGGTGTATCC+AGG | 0.452183 | 1_1:-80211679 | Msa0047420:CDS |
| AACAGCAACAGCAACAGCAA+TGG | 0.455036 | 1_1:-80214362 | Msa0047420:exon |
| TCTTCTAGCATTCAAGATCC+TGG | 0.456750 | 1_1:-80209669 | Msa0047420:CDS |
| TATACTTGTAAGTTATTGCT+AGG | 0.456800 | 1_1:+80210130 | None:intergenic |
| ATCTTACAGGGCATGGAGCT+TGG | 0.457393 | 1_1:-80211486 | Msa0047420:intron |
| CGTTCAAACAAGTGACTGAA+TGG | 0.461182 | 1_1:+80211313 | None:intergenic |
| AGCTTCCTTCAGTTCTGGCA+AGG | 0.465740 | 1_1:+80209498 | None:intergenic |
| ATTTAGAGCTCAAGTGAGAA+AGG | 0.466824 | 1_1:-80210373 | Msa0047420:intron |
| GATTCTGCGCATTCGAAGGC+GGG | 0.475108 | 1_1:-80209467 | Msa0047420:CDS |
| TTATATACCAGCAAGTTTCA+CGG | 0.480628 | 1_1:+80211440 | None:intergenic |
| TGTTTCAGGTTTCACACACT+TGG | 0.481088 | 1_1:-80211689 | Msa0047420:intron |
| GTCAAAATCGATTTGACTCG+TGG | 0.496079 | 1_1:-80209097 | Msa0047420:CDS |
| TTCTCCCTTGCCAGAACTGA+AGG | 0.506157 | 1_1:-80209503 | Msa0047420:CDS |
| AATCTGGAATGGACAGCGCC+TGG | 0.509801 | 1_1:+80211661 | None:intergenic |
| CACGAGTGGCAAACAACTTG+TGG | 0.515439 | 1_1:+80209895 | None:intergenic |
| TTCATATTCATGAATTGTAA+CGG | 0.516215 | 1_1:+80208284 | None:intergenic |
| TTGACACTGAACAGTTTCAA+AGG | 0.518007 | 1_1:-80214052 | Msa0047420:intron |
| TCGTGGAAAGCATAATCCTC+TGG | 0.518062 | 1_1:-80209080 | Msa0047420:CDS |
| TCAGGATATAGTTTGTTCCC+AGG | 0.524472 | 1_1:-80209272 | Msa0047420:intron |
| CATATACATGAATTAAGAGT+CGG | 0.529356 | 1_1:+80208259 | None:intergenic |
| TTCTGCATGATGTGGGACAC+GGG | 0.529435 | 1_1:-80211336 | Msa0047420:CDS |
| CTTCGCGAGTTGAAACAACT+TGG | 0.538135 | 1_1:-80213921 | Msa0047420:intron |
| ATCATATCTTGACAAGATGC+AGG | 0.542051 | 1_1:+80208519 | None:intergenic |
| GTTAGGACTTCTGCATGATG+TGG | 0.544815 | 1_1:-80211344 | Msa0047420:intron |
| GATGCAACTTTGAATTTCAG+AGG | 0.545820 | 1_1:-80210182 | Msa0047420:CDS |
| GAGAATGCTCAAATCTGGAA+TGG | 0.551432 | 1_1:+80211650 | None:intergenic |
| CTCCAAATTTGCTCTACCTA+GGG | 0.552449 | 1_1:-80210520 | Msa0047420:intron |
| TAGGTTAATGGAGACCATGC+GGG | 0.553236 | 1_1:-80210052 | Msa0047420:CDS |
| AATGGTTGATTATATAGTTG+GGG | 0.560037 | 1_1:-80211046 | Msa0047420:CDS |
| AGTTGATTCTGCGCATTCGA+AGG | 0.562157 | 1_1:-80209471 | Msa0047420:CDS |
| TGGTGGAGTTATGTTGAAAG+AGG | 0.563605 | 1_1:-80209140 | Msa0047420:CDS |
| CTATAATAAGGAAAAGAAGA+AGG | 0.563862 | 1_1:+80208175 | None:intergenic |
| CTTCTGCATGATGTGGGACA+CGG | 0.565706 | 1_1:-80211337 | Msa0047420:CDS |
| ACTCGTGACTGTCGAGCTTG+TGG | 0.569931 | 1_1:-80210210 | Msa0047420:CDS |
| TGGCAAGGGAGAAGTCTCAA+TGG | 0.570504 | 1_1:+80209513 | None:intergenic |
| GCTTCCTTCAGTTCTGGCAA+GGG | 0.575833 | 1_1:+80209499 | None:intergenic |
| TGAGAATCGCTGATAACTCT+GGG | 0.580578 | 1_1:+80211280 | None:intergenic |
| GCTCCAAATTTGCTCTACCT+AGG | 0.581048 | 1_1:-80210521 | Msa0047420:CDS |
| GACAAGATGCAGGCAACAAG+TGG | 0.582338 | 1_1:+80208529 | None:intergenic |
| TTATACGCATCCAAAAGTAA+AGG | 0.591041 | 1_1:-80209853 | Msa0047420:intron |
| ATTACCTTCCAGTATTCACC+AGG | 0.596415 | 1_1:+80209651 | None:intergenic |
| ATGGTCTCCATTAACCTATG+AGG | 0.602845 | 1_1:+80210057 | None:intergenic |
| AACATATGGAATCAAAGCAC+AGG | 0.604310 | 1_1:-80208335 | Msa0047420:CDS |
| TAACGAGTATGCTGTTCCAA+AGG | 0.607057 | 1_1:-80209326 | Msa0047420:CDS |
| TTTATTGAATACCTTTCCAG+AGG | 0.608230 | 1_1:+80209064 | None:intergenic |
| TGATTCTGCGCATTCGAAGG+CGG | 0.611092 | 1_1:-80209468 | Msa0047420:CDS |
| TTAGGACTTCTGCATGATGT+GGG | 0.618531 | 1_1:-80211343 | Msa0047420:intron |
| GAAAGCATAATCCTCTGGAA+AGG | 0.620450 | 1_1:-80209075 | Msa0047420:intron |
| AGATCCTGGTGAATACTGGA+AGG | 0.630470 | 1_1:-80209655 | Msa0047420:intron |
| GAAGAAACGACGTCGTAACG+AGG | 0.632181 | 1_1:+80214307 | None:intergenic |
| TCTATACAGATCGGCACGAG+TGG | 0.634664 | 1_1:+80209881 | None:intergenic |
| CTCGTCATCCAAGACCCGCA+TGG | 0.636946 | 1_1:+80210038 | None:intergenic |
| TAGGTCGCATGAACAAATGT+CGG | 0.639717 | 1_1:-80211073 | Msa0047420:CDS |
| TTGTCAAGATATGATAGTAA+GGG | 0.640152 | 1_1:-80208511 | Msa0047420:CDS |
| ATAAACTGTTCTATACAGAT+CGG | 0.640246 | 1_1:+80209872 | None:intergenic |
| GTAACGAGGAGGCAATGAAA+CGG | 0.641197 | 1_1:+80214321 | None:intergenic |
| AGTGGCAAACAACTTGTGGA+TGG | 0.659577 | 1_1:+80209899 | None:intergenic |
| GAGTTATCAGCGATTCTCAG+TGG | 0.666688 | 1_1:-80211276 | Msa0047420:intron |
| ATAGGTTAATGGAGACCATG+CGG | 0.697313 | 1_1:-80210053 | Msa0047420:CDS |
| GAAACGACGTCGTAACGAGG+AGG | 0.699223 | 1_1:+80214310 | None:intergenic |
| TACAAGTATACAATATACAG+AGG | 0.700591 | 1_1:-80210117 | Msa0047420:CDS |
| TGGGAACAAACTATATCCTG+AGG | 0.705774 | 1_1:+80209274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAAAGCTTATAAAT+AGG | + | chr1_1:80213552-80213571 | None:intergenic | 10.0% |
| !! | TTCTTTATTGTATACTAATA+TGG | - | chr1_1:80208562-80208581 | Msa0047420:CDS | 15.0% |
| !! | AGATTATGATTATTTCAAAA+AGG | + | chr1_1:80208693-80208712 | None:intergenic | 15.0% |
| !! | TTGAAATAATCATAATCTTA+AGG | - | chr1_1:80208695-80208714 | Msa0047420:intron | 15.0% |
| !! | TACAAATTTATAGACTAATT+TGG | - | chr1_1:80208738-80208757 | Msa0047420:intron | 15.0% |
| !! | TAGTAATATTCAAAATCTTA+AGG | + | chr1_1:80208858-80208877 | None:intergenic | 15.0% |
| !!! | AAGATTTTGAATATTACTAA+AGG | - | chr1_1:80208859-80208878 | Msa0047420:intron | 15.0% |
| !!! | AGATTTTGAATATTACTAAA+GGG | - | chr1_1:80208860-80208879 | Msa0047420:intron | 15.0% |
| !! | ATTGTAAGTAGTTAAATATA+AGG | - | chr1_1:80208953-80208972 | Msa0047420:intron | 15.0% |
| !! | AGATTATGAATATTTCAAAT+AGG | + | chr1_1:80209027-80209046 | None:intergenic | 15.0% |
| !! | TTAAAACTATCTTAATAAGA+GGG | + | chr1_1:80209548-80209567 | None:intergenic | 15.0% |
| !!! | TTTAAAACTATCTTAATAAG+AGG | + | chr1_1:80209549-80209568 | None:intergenic | 15.0% |
| !!! | TTAAATTATTTCTGTTGTAA+TGG | - | chr1_1:80209564-80209583 | Msa0047420:intron | 15.0% |
| !!! | TTATTGTTAGTTAATTTTGA+GGG | - | chr1_1:80210045-80210064 | Msa0047420:CDS | 15.0% |
| !!! | ATATCTTTTATTCTCTTTTA+CGG | + | chr1_1:80210435-80210454 | None:intergenic | 15.0% |
| !! | ATAGAATATTTACATTAACA+TGG | + | chr1_1:80211758-80211777 | None:intergenic | 15.0% |
| !! | ATAGACAATTTAAATACAAA+AGG | + | chr1_1:80211950-80211969 | None:intergenic | 15.0% |
| !! | AAAGATTACATAACAATATT+AGG | + | chr1_1:80213443-80213462 | None:intergenic | 15.0% |
| !! | ATTATTCAATATGTAAATGA+AGG | + | chr1_1:80213826-80213845 | None:intergenic | 15.0% |
| !! | AAAGAAAGTAATATTAAACT+TGG | + | chr1_1:80213991-80214010 | None:intergenic | 15.0% |
| !!! | TTTTTGTTATTCTGTGAAAT+GGG | - | chr1_1:80208415-80208434 | Msa0047420:intron | 20.0% |
| !! | CAATAAAGAAACAAAATCAA+TGG | + | chr1_1:80208552-80208571 | None:intergenic | 20.0% |
| !! | AAATTTATAGACTAATTTGG+TGG | - | chr1_1:80208741-80208760 | Msa0047420:intron | 20.0% |
| !! | TTAGAGATATTCATAATCAT+AGG | - | chr1_1:80208999-80209018 | Msa0047420:intron | 20.0% |
| !! | TAGAGATATTCATAATCATA+GGG | - | chr1_1:80209000-80209019 | Msa0047420:intron | 20.0% |
| !! | CAGTTTACTCAATATATATT+CGG | - | chr1_1:80209093-80209112 | Msa0047420:CDS | 20.0% |
| !! | AATATGCATATATAATCTCA+TGG | + | chr1_1:80209202-80209221 | None:intergenic | 20.0% |
| !!! | CGATTATGAATTTTTCAAAA+AGG | + | chr1_1:80209300-80209319 | None:intergenic | 20.0% |
| !! | TTTGAAAAATTCATAATCGT+AGG | - | chr1_1:80209301-80209320 | Msa0047420:CDS | 20.0% |
| !! | AATATATTACTTATCGTCTT+TGG | + | chr1_1:80209695-80209714 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTTATGTCAAAC+AGG | - | chr1_1:80209821-80209840 | Msa0047420:intron | 20.0% |
| !!! | CTTATTGTTAGTTAATTTTG+AGG | - | chr1_1:80210044-80210063 | Msa0047420:CDS | 20.0% |
| !! | AAATAACTCAATATAGTACA+AGG | + | chr1_1:80210138-80210157 | None:intergenic | 20.0% |
| !! | ATTTAGATTTGACATTGAAA+TGG | - | chr1_1:80210221-80210240 | Msa0047420:CDS | 20.0% |
| !!! | TAGTTTTATAGAAACTGAAA+TGG | - | chr1_1:80210509-80210528 | Msa0047420:intron | 20.0% |
| !! | CATAAAACAAATTGATCTAT+GGG | + | chr1_1:80210725-80210744 | None:intergenic | 20.0% |
| !! | ACATAAAACAAATTGATCTA+TGG | + | chr1_1:80210726-80210745 | None:intergenic | 20.0% |
| !!! | ATCAATTTGTTTTATGTTTC+AGG | - | chr1_1:80210729-80210748 | Msa0047420:intron | 20.0% |
| !!! | ACTTAACTGTATCTTTAAAA+GGG | + | chr1_1:80210895-80210914 | None:intergenic | 20.0% |
| !! | AACTTAACTGTATCTTTAAA+AGG | + | chr1_1:80210896-80210915 | None:intergenic | 20.0% |
| !!! | AGAAAGTACTATGTTTTATA+TGG | - | chr1_1:80211271-80211290 | Msa0047420:intron | 20.0% |
| !! | AAAATGGTTGATTATATAGT+TGG | - | chr1_1:80211384-80211403 | Msa0047420:intron | 20.0% |
| !! | AAATGGTTGATTATATAGTT+GGG | - | chr1_1:80211385-80211404 | Msa0047420:intron | 20.0% |
| !! | TAAAAGACAATTGCAAATAA+TGG | + | chr1_1:80211462-80211481 | None:intergenic | 20.0% |
| !!! | TAATACCTTTATTTTCTTGT+TGG | - | chr1_1:80212034-80212053 | Msa0047420:intron | 20.0% |
| !! | AATAACCAACAAGAAAATAA+AGG | + | chr1_1:80212042-80212061 | None:intergenic | 20.0% |
| !! | TTAAATTCTATTATCCTCAT+AGG | - | chr1_1:80212361-80212380 | Msa0047420:intron | 20.0% |
| !! | AATTAAAACCACTAAGTTTA+TGG | + | chr1_1:80212658-80212677 | None:intergenic | 20.0% |
| !! | AATCTTGATAAAAGATAGAA+AGG | + | chr1_1:80213528-80213547 | None:intergenic | 20.0% |
| !!! | GCTTTATATTTTATTGTTGA+TGG | - | chr1_1:80213560-80213579 | Msa0047420:intron | 20.0% |
| !! | TCTTAGTTACATTAAATCAA+AGG | + | chr1_1:80213657-80213676 | None:intergenic | 20.0% |
| !!! | TACGTGAACAATAATTTTAA+GGG | - | chr1_1:80213694-80213713 | Msa0047420:intron | 20.0% |
| !!! | AATTATTTTATACTTGCTAC+TGG | - | chr1_1:80213792-80213811 | Msa0047420:intron | 20.0% |
| !! | ATATTGAATAATATCTGTTC+AGG | - | chr1_1:80213834-80213853 | Msa0047420:intron | 20.0% |
| !! | AAGTAATATTAAACTTGGAT+TGG | + | chr1_1:80213986-80214005 | None:intergenic | 20.0% |
| !! | AATTATCAGCTAAAAACATA+TGG | - | chr1_1:80214083-80214102 | Msa0047420:intron | 20.0% |
| !! | TTCATATTCATGAATTGTAA+CGG | + | chr1_1:80214151-80214170 | None:intergenic | 20.0% |
| !! | ACTTCTTCTATACTATAATA+AGG | + | chr1_1:80214272-80214291 | None:intergenic | 20.0% |
| !! | AAGTAATAGATTCATTGATA+TGG | + | chr1_1:80214407-80214426 | None:intergenic | 20.0% |
| !!! | CTTTTTGTTATTCTGTGAAA+TGG | - | chr1_1:80208414-80208433 | Msa0047420:intron | 25.0% |
| !! | TTTTTGTGTGTATATATTGC+AGG | - | chr1_1:80208488-80208507 | Msa0047420:CDS | 25.0% |
| ! | TGTTGAATCACATATATATG+AGG | - | chr1_1:80208589-80208608 | Msa0047420:intron | 25.0% |
| !!! | TATATATGAGGAACTGATTT+TGG | - | chr1_1:80208601-80208620 | Msa0047420:intron | 25.0% |
| !!! | TTTTTACCTGTATTAGTCTT+TGG | - | chr1_1:80208646-80208665 | Msa0047420:intron | 25.0% |
| !!! | TTTTTTAATCAAGAAGCTAC+TGG | - | chr1_1:80208778-80208797 | Msa0047420:intron | 25.0% |
| !! | TTTTTAATCAAGAAGCTACT+GGG | - | chr1_1:80208779-80208798 | Msa0047420:intron | 25.0% |
| ! | AAAGTCAGATATGAATTTAG+TGG | + | chr1_1:80208814-80208833 | None:intergenic | 25.0% |
| ! | AAATTCATATCTGACTTTGT+AGG | - | chr1_1:80208816-80208835 | Msa0047420:intron | 25.0% |
| ! | GAGAATATGTAGTTAAATAC+AGG | - | chr1_1:80208921-80208940 | Msa0047420:intron | 25.0% |
| ! | GAAATTTGTGTATCTTATGT+AGG | - | chr1_1:80209487-80209506 | Msa0047420:CDS | 25.0% |
| ! | AACTAACAATAAGTTACCTA+TGG | + | chr1_1:80210037-80210056 | None:intergenic | 25.0% |
| ! | TCATAAAACTAACACAAATG+AGG | + | chr1_1:80210202-80210221 | None:intergenic | 25.0% |
| !!! | ATTGTGTCTGTATATTTTTG+AGG | - | chr1_1:80210337-80210356 | Msa0047420:CDS | 25.0% |
| ! | ATTTATTGAGGAACCAAATT+GGG | + | chr1_1:80210582-80210601 | None:intergenic | 25.0% |
| ! | TATTTATTGAGGAACCAAAT+TGG | + | chr1_1:80210583-80210602 | None:intergenic | 25.0% |
| !! | ATTTGGTTCCTCAATAAATA+AGG | - | chr1_1:80210583-80210602 | Msa0047420:intron | 25.0% |
| !! | TTTGGTTCCTCAATAAATAA+GGG | - | chr1_1:80210584-80210603 | Msa0047420:intron | 25.0% |
| !!! | ACATTGTCATCATTTTTGTT+AGG | - | chr1_1:80211071-80211090 | Msa0047420:CDS | 25.0% |
| ! | CTTCTTTCTATAACATTACA+AGG | + | chr1_1:80211225-80211244 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCTTGTGTTTCTA+AGG | - | chr1_1:80211242-80211261 | Msa0047420:intron | 25.0% |
| ! | AAAACATAGTACTTTCTTTC+AGG | + | chr1_1:80211268-80211287 | None:intergenic | 25.0% |
| ! | CACACTATATAAACAATGTT+TGG | - | chr1_1:80211322-80211341 | Msa0047420:CDS | 25.0% |
| !! | TTTGGTATTTTGTACTTTGT+AGG | - | chr1_1:80211340-80211359 | Msa0047420:CDS | 25.0% |
| ! | AATGGTTGATTATATAGTTG+GGG | - | chr1_1:80211386-80211405 | Msa0047420:intron | 25.0% |
| ! | CAATATACTTGACATAAAAC+AGG | + | chr1_1:80211485-80211504 | None:intergenic | 25.0% |
| ! | ACTTCTAAACTTCAAAAGAA+AGG | + | chr1_1:80211620-80211639 | None:intergenic | 25.0% |
| !!! | CTTTTGAAGTTTAGAAGTAT+TGG | - | chr1_1:80211622-80211641 | Msa0047420:CDS | 25.0% |
| !!! | CAAATAGCTATTACTTTTGT+TGG | - | chr1_1:80211781-80211800 | Msa0047420:intron | 25.0% |
| ! | TATTCTCAAGAAATATTTGC+CGG | - | chr1_1:80211967-80211986 | Msa0047420:intron | 25.0% |
| ! | TACCTACAATATGAATAAAC+CGG | + | chr1_1:80211989-80212008 | None:intergenic | 25.0% |
| ! | TTGTATGATATTGTTGCAAA+TGG | - | chr1_1:80212086-80212105 | Msa0047420:intron | 25.0% |
| ! | TATACTTGTAAGTTATTGCT+AGG | + | chr1_1:80212305-80212324 | None:intergenic | 25.0% |
| ! | TACAAGTATACAATATACAG+AGG | - | chr1_1:80212315-80212334 | Msa0047420:intron | 25.0% |
| ! | TAAGATCTAGCAAATTACAA+AGG | + | chr1_1:80212513-80212532 | None:intergenic | 25.0% |
| ! | ATAAACTGTTCTATACAGAT+CGG | + | chr1_1:80212563-80212582 | None:intergenic | 25.0% |
| !! | CTAATTCATACCTTTACTTT+TGG | + | chr1_1:80212592-80212611 | None:intergenic | 25.0% |
| ! | GTATGAATTAGTTGCTTATT+CGG | - | chr1_1:80212601-80212620 | Msa0047420:intron | 25.0% |
| ! | TTAATTTCATTTGTTCGTGA+TGG | - | chr1_1:80212627-80212646 | Msa0047420:intron | 25.0% |
| ! | AAATTGTCCATTATATCCTT+TGG | + | chr1_1:80213125-80213144 | None:intergenic | 25.0% |
| ! | ATTAAAAAGATTAAGGACCT+GGG | + | chr1_1:80213180-80213199 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTATTTTTGCCA+AGG | - | chr1_1:80213214-80213233 | Msa0047420:intron | 25.0% |
| !! | TAATCTTTTCTTATCTCTTC+TGG | - | chr1_1:80213455-80213474 | Msa0047420:intron | 25.0% |
| ! | GATGGTGTTTATATTGTATT+AGG | - | chr1_1:80213578-80213597 | Msa0047420:intron | 25.0% |
| ! | TATTGTATTAGGCGATTTAT+TGG | - | chr1_1:80213589-80213608 | Msa0047420:intron | 25.0% |
| ! | ATTGTATTAGGCGATTTATT+GGG | - | chr1_1:80213590-80213609 | Msa0047420:intron | 25.0% |
| !! | GTACGTGAACAATAATTTTA+AGG | - | chr1_1:80213693-80213712 | Msa0047420:intron | 25.0% |
| ! | TTGTCAAGATATGATAGTAA+GGG | - | chr1_1:80213921-80213940 | Msa0047420:intron | 25.0% |
| ! | CATATACATGAATTAAGAGT+CGG | + | chr1_1:80214176-80214195 | None:intergenic | 25.0% |
| !! | TATATGAAAACTGTCTCTTT+TGG | - | chr1_1:80214190-80214209 | Msa0047420:intron | 25.0% |
| ! | CTATAATAAGGAAAAGAAGA+AGG | + | chr1_1:80214260-80214279 | None:intergenic | 25.0% |
| !! | CACTATGGAAATATAGTTTT+GGG | - | chr1_1:80214304-80214323 | Msa0047420:CDS | 25.0% |
| !!! | TATAGTGTAGCATTTGTTTT+TGG | + | chr1_1:80214363-80214382 | None:intergenic | 25.0% |
| !! | ATTAGTCTTTGGATCGAATT+CGG | - | chr1_1:80208657-80208676 | Msa0047420:intron | 30.0% |
| ! | TTTTAATCAAGAAGCTACTG+GGG | - | chr1_1:80208780-80208799 | Msa0047420:intron | 30.0% |
| GTGAAATTTGACAAATTCAG+TGG | + | chr1_1:80208886-80208905 | None:intergenic | 30.0% | |
| AGATTCGGAAACAAATTTAG+TGG | + | chr1_1:80209158-80209177 | None:intergenic | 30.0% | |
| ! | AAATTTGTTTCCGAATCTGT+AGG | - | chr1_1:80209160-80209179 | Msa0047420:intron | 30.0% |
| ! | AATTTGTTTCCGAATCTGTA+GGG | - | chr1_1:80209161-80209180 | Msa0047420:intron | 30.0% |
| ! | TTTTTATCAAGCACCTACTA+TGG | - | chr1_1:80209351-80209370 | Msa0047420:intron | 30.0% |
| GCGTATTTAAATTCCATAGT+AGG | + | chr1_1:80209367-80209386 | None:intergenic | 30.0% | |
| ! | ATGAATTGTTCTTGTTATGC+TGG | - | chr1_1:80209441-80209460 | Msa0047420:intron | 30.0% |
| !! | AATAGCTCTGAAATCTGTAT+TGG | - | chr1_1:80209465-80209484 | Msa0047420:CDS | 30.0% |
| TGTATCTTATGTAGGAACAT+AGG | - | chr1_1:80209495-80209514 | Msa0047420:CDS | 30.0% | |
| GGTTGTTACATTACATATGA+TGG | - | chr1_1:80209596-80209615 | Msa0047420:intron | 30.0% | |
| TCCTAGTCATATATGCTTAA+TGG | - | chr1_1:80209770-80209789 | Msa0047420:intron | 30.0% | |
| ACCATTAAGCATATATGACT+AGG | + | chr1_1:80209774-80209793 | None:intergenic | 30.0% | |
| !! | TGCTTAATGGTTTTACTTGA+AGG | - | chr1_1:80209783-80209802 | Msa0047420:intron | 30.0% |
| TTTATATTGCTTTCGTGATC+TGG | - | chr1_1:80209845-80209864 | Msa0047420:intron | 30.0% | |
| GGCAGTATTATTGTACTTAT+TGG | - | chr1_1:80210096-80210115 | Msa0047420:CDS | 30.0% | |
| ! | AGACACAATTTTACATCATG+TGG | + | chr1_1:80210326-80210345 | None:intergenic | 30.0% |
| TCCATGTGTATATGTATGTT+TGG | - | chr1_1:80210378-80210397 | Msa0047420:intron | 30.0% | |
| ACCAAACATACATATACACA+TGG | + | chr1_1:80210382-80210401 | None:intergenic | 30.0% | |
| TTTATTGAGGAACCAAATTG+GGG | + | chr1_1:80210581-80210600 | None:intergenic | 30.0% | |
| ! | CTTATTGCCCTTATTTATTG+AGG | + | chr1_1:80210594-80210613 | None:intergenic | 30.0% |
| AGTAATCTGTTCATAACGAT+AGG | - | chr1_1:80210612-80210631 | Msa0047420:intron | 30.0% | |
| GTAATCTGTTCATAACGATA+GGG | - | chr1_1:80210613-80210632 | Msa0047420:intron | 30.0% | |
| TTATATACCAGCAAGTTTCA+CGG | + | chr1_1:80210995-80211014 | None:intergenic | 30.0% | |
| ! | TGACTCTTTTTAACATGTGA+GGG | + | chr1_1:80211431-80211450 | None:intergenic | 30.0% |
| ! | TTGACTCTTTTTAACATGTG+AGG | + | chr1_1:80211432-80211451 | None:intergenic | 30.0% |
| TCACATGTTAAAAAGAGTCA+AGG | - | chr1_1:80211431-80211450 | Msa0047420:intron | 30.0% | |
| ! | CATCATAAGCATGATGTTTT+AGG | - | chr1_1:80211529-80211548 | Msa0047420:intron | 30.0% |
| !!! | TGGACACTTTTTGAAACTTA+CGG | - | chr1_1:80211642-80211661 | Msa0047420:CDS | 30.0% |
| AAGCATGTTGCATATTCTAA+TGG | - | chr1_1:80211850-80211869 | Msa0047420:intron | 30.0% | |
| AGCATGTTGCATATTCTAAT+GGG | - | chr1_1:80211851-80211870 | Msa0047420:intron | 30.0% | |
| ! | TATTCTAATGGGTGGTTATT+TGG | - | chr1_1:80211862-80211881 | Msa0047420:intron | 30.0% |
| TGCTGTAATGTAATGATTTG+TGG | - | chr1_1:80212169-80212188 | Msa0047420:intron | 30.0% | |
| CTATTATCCTCATAGGTTAA+TGG | - | chr1_1:80212368-80212387 | Msa0047420:intron | 30.0% | |
| CTAGCAAATTACAAAGGAAA+AGG | + | chr1_1:80212507-80212526 | None:intergenic | 30.0% | |
| TTATACGCATCCAAAAGTAA+AGG | - | chr1_1:80212579-80212598 | Msa0047420:intron | 30.0% | |
| AATACTGGAAGGTAATTATG+AGG | - | chr1_1:80212788-80212807 | Msa0047420:intron | 30.0% | |
| ATACTGGAAGGTAATTATGA+GGG | - | chr1_1:80212789-80212808 | Msa0047420:intron | 30.0% | |
| AGCTGATTAAGTTTCTGTTT+CGG | - | chr1_1:80213071-80213090 | Msa0047420:intron | 30.0% | |
| GATTAAAAAGATTAAGGACC+TGG | + | chr1_1:80213181-80213200 | None:intergenic | 30.0% | |
| GAGCAGGATTAAAAAGATTA+AGG | + | chr1_1:80213187-80213206 | None:intergenic | 30.0% | |
| TTTATTGAATACCTTTCCAG+AGG | + | chr1_1:80213371-80213390 | None:intergenic | 30.0% | |
| GTAATAATACATGTCGATAG+TGG | - | chr1_1:80213396-80213415 | Msa0047420:intron | 30.0% | |
| ! | TTTATTGGGTGATAATGTCA+AGG | - | chr1_1:80213604-80213623 | Msa0047420:intron | 30.0% |
| CTTGTCAAGATATGATAGTA+AGG | - | chr1_1:80213920-80213939 | Msa0047420:intron | 30.0% | |
| !!! | CTGAAATTTTTTCCACCTAT+AGG | + | chr1_1:80214052-80214071 | None:intergenic | 30.0% |
| ATAGGTGGAAAAAATTTCAG+AGG | - | chr1_1:80214052-80214071 | Msa0047420:intron | 30.0% | |
| !!! | TACTGCTACAACTACTTTTT+TGG | - | chr1_1:80214234-80214253 | Msa0047420:intron | 30.0% |
| ! | AGTCATCATATTTTCCACTA+TGG | - | chr1_1:80214289-80214308 | Msa0047420:CDS | 30.0% |
| CCAAAACTATATTTCCATAG+TGG | + | chr1_1:80214306-80214325 | None:intergenic | 30.0% | |
| ! | CCACTATGGAAATATAGTTT+TGG | - | chr1_1:80214303-80214322 | Msa0047420:CDS | 30.0% |
| TTGACACTGAACAGTTTCAA+AGG | - | chr1_1:80208380-80208399 | Msa0047420:intron | 35.0% | |
| TTCGATCCAAAGACTAATAC+AGG | + | chr1_1:80208655-80208674 | None:intergenic | 35.0% | |
| GGACTAATATTTGACAGAGT+CGG | + | chr1_1:80209237-80209256 | None:intergenic | 35.0% | |
| GTAAACCACTAAATTCGTCA+AGG | + | chr1_1:80209329-80209348 | None:intergenic | 35.0% | |
| CTGTTGTAATGGTTGAAATC+AGG | - | chr1_1:80209575-80209594 | Msa0047420:intron | 35.0% | |
| TACAAAAAACCAGAAACCAG+AGG | + | chr1_1:80209979-80209998 | None:intergenic | 35.0% | |
| !!! | TCTGGTTTCTGGTTTTTTGT+AGG | - | chr1_1:80209978-80209997 | Msa0047420:intron | 35.0% |
| !!! | TTTTTTGTAGGTTCAGTGCA+AGG | - | chr1_1:80209990-80210009 | Msa0047420:intron | 35.0% |
| !! | TGTACTTATTGGCTCTATTC+TGG | - | chr1_1:80210107-80210126 | Msa0047420:CDS | 35.0% |
| CAATCACAGTTTCACGAAAT+TGG | + | chr1_1:80210271-80210290 | None:intergenic | 35.0% | |
| ! | CACAATTTTACATCATGTGG+CGG | + | chr1_1:80210323-80210342 | None:intergenic | 35.0% |
| TGGGAGAGATCATATACTAA+AGG | + | chr1_1:80210706-80210725 | None:intergenic | 35.0% | |
| CATATGTCTGTGATCTTACA+GGG | - | chr1_1:80210934-80210953 | Msa0047420:intron | 35.0% | |
| TGAACAAATGTCGGTCAAAA+TGG | - | chr1_1:80211368-80211387 | Msa0047420:intron | 35.0% | |
| TGTGAGGGTCAATATCAATA+TGG | + | chr1_1:80211416-80211435 | None:intergenic | 35.0% | |
| ATGTTGCATATTCTAATGGG+TGG | - | chr1_1:80211854-80211873 | Msa0047420:intron | 35.0% | |
| !! | TGCCGGTTTATTCATATTGT+AGG | - | chr1_1:80211984-80212003 | Msa0047420:intron | 35.0% |
| ! | ATTTAGAGCTCAAGTGAGAA+AGG | - | chr1_1:80212059-80212078 | Msa0047420:intron | 35.0% |
| ATTGTTGCAAATGGACGAAA+TGG | - | chr1_1:80212095-80212114 | Msa0047420:intron | 35.0% | |
| GATGCAACTTTGAATTTCAG+AGG | - | chr1_1:80212250-80212269 | Msa0047420:intron | 35.0% | |
| TAACTTCGAAAAAATGCAGC+TGG | - | chr1_1:80212878-80212897 | Msa0047420:intron | 35.0% | |
| TGCTGTTCCAAAGGATATAA+TGG | - | chr1_1:80213115-80213134 | Msa0047420:intron | 35.0% | |
| AAAAACATGTGCAAATGAGC+AGG | + | chr1_1:80213203-80213222 | None:intergenic | 35.0% | |
| ! | ATTTTTGCCAAGGTTCAACA+AGG | - | chr1_1:80213224-80213243 | Msa0047420:intron | 35.0% |
| TAAAGTTCCTTGTTGAACCT+TGG | + | chr1_1:80213234-80213253 | None:intergenic | 35.0% | |
| ACCACCATTTGACAGAAAAA+TGG | - | chr1_1:80213272-80213291 | Msa0047420:intron | 35.0% | |
| !! | ACCATTTTTCTGTCAAATGG+TGG | + | chr1_1:80213276-80213295 | None:intergenic | 35.0% |
| ACCATTTGACAGAAAAATGG+TGG | - | chr1_1:80213275-80213294 | Msa0047420:intron | 35.0% | |
| !! | TCCACCATTTTTCTGTCAAA+TGG | + | chr1_1:80213279-80213298 | None:intergenic | 35.0% |
| ATCATATCTTGACAAGATGC+AGG | + | chr1_1:80213916-80213935 | None:intergenic | 35.0% | |
| TTAACTTTACTGACCAGTTC+TGG | + | chr1_1:80213961-80213980 | None:intergenic | 35.0% | |
| TGACCTTTGAACAATCCTAT+AGG | - | chr1_1:80214034-80214053 | Msa0047420:intron | 35.0% | |
| AACATATGGAATCAAAGCAC+AGG | - | chr1_1:80214097-80214116 | Msa0047420:intron | 35.0% | |
| !!! | TGTAGCATTTGTTTTTGGTG+TGG | + | chr1_1:80214358-80214377 | None:intergenic | 35.0% |
| ! | CACGTTCATGATAACGTTCA+TGG | - | chr1_1:80208158-80208177 | Msa0047420:three_prime_UTR | 40.0% |
| TTGGATCGAATTCGGATGTT+AGG | - | chr1_1:80208665-80208684 | Msa0047420:intron | 40.0% | |
| TTTGTAGGCTGCACTCAAAT+AGG | - | chr1_1:80208831-80208850 | Msa0047420:intron | 40.0% | |
| TTGAGAGTTCCCTACAGATT+CGG | + | chr1_1:80209173-80209192 | None:intergenic | 40.0% | |
| ! | ACCAATTCAATGGTGATGCT+TGG | - | chr1_1:80209272-80209291 | Msa0047420:intron | 40.0% |
| ! | CCAATTCAATGGTGATGCTT+GGG | - | chr1_1:80209273-80209292 | Msa0047420:CDS | 40.0% |
| AGGAACCTTGACGAATTTAG+TGG | - | chr1_1:80209321-80209340 | Msa0047420:CDS | 40.0% | |
| ATATTGCTTTCGTGATCTGG+TGG | - | chr1_1:80209848-80209867 | Msa0047420:intron | 40.0% | |
| TATTGCTTTCGTGATCTGGT+GGG | - | chr1_1:80209849-80209868 | Msa0047420:intron | 40.0% | |
| !! | TAGACTGATTTGAGTCAGTG+TGG | - | chr1_1:80209882-80209901 | Msa0047420:CDS | 40.0% |
| !! | AGACTGATTTGAGTCAGTGT+GGG | - | chr1_1:80209883-80209902 | Msa0047420:CDS | 40.0% |
| !! | CATAGGTTTGTTGTGGTTTC+CGG | - | chr1_1:80209935-80209954 | Msa0047420:intron | 40.0% |
| !! | TTTTTAGTGCCTCTGGTTTC+TGG | - | chr1_1:80209967-80209986 | Msa0047420:intron | 40.0% |
| !! | TTTTGAGGGTAGCATTCCTT+TGG | - | chr1_1:80210059-80210078 | Msa0047420:CDS | 40.0% |
| TACAATAATACTGCCACAGC+AGG | + | chr1_1:80210091-80210110 | None:intergenic | 40.0% | |
| !! | TGTTTCAGGTTTCACACACT+TGG | - | chr1_1:80210743-80210762 | Msa0047420:intron | 40.0% |
| GAGAATGCTCAAATCTGGAA+TGG | + | chr1_1:80210785-80210804 | None:intergenic | 40.0% | |
| TCCAGATTTGAGCATTCTCT+TGG | - | chr1_1:80210786-80210805 | Msa0047420:intron | 40.0% | |
| TCCAAGAGAATGCTCAAATC+TGG | + | chr1_1:80210790-80210809 | None:intergenic | 40.0% | |
| AGCATTCTCTTGGAGTGTAT+TGG | - | chr1_1:80210796-80210815 | Msa0047420:intron | 40.0% | |
| GCATATGTCTGTGATCTTAC+AGG | - | chr1_1:80210933-80210952 | Msa0047420:intron | 40.0% | |
| ATTCAATCCGTGAAACTTGC+TGG | - | chr1_1:80210985-80211004 | Msa0047420:intron | 40.0% | |
| TTAGGACTTCTGCATGATGT+GGG | - | chr1_1:80211089-80211108 | Msa0047420:intron | 40.0% | |
| CGTTCAAACAAGTGACTGAA+TGG | + | chr1_1:80211122-80211141 | None:intergenic | 40.0% | |
| TGAGAATCGCTGATAACTCT+GGG | + | chr1_1:80211155-80211174 | None:intergenic | 40.0% | |
| TAGGTCGCATGAACAAATGT+CGG | - | chr1_1:80211359-80211378 | Msa0047420:intron | 40.0% | |
| ! | ATTAACATGGAAGCGTACTC+AGG | + | chr1_1:80211745-80211764 | None:intergenic | 40.0% |
| CACTTGGCAGGAAATGATAT+TGG | - | chr1_1:80211885-80211904 | Msa0047420:intron | 40.0% | |
| ! | CTCCAAATTTGCTCTACCTA+GGG | - | chr1_1:80211912-80211931 | Msa0047420:intron | 40.0% |
| TACCCTAGGTAGAGCAAATT+TGG | + | chr1_1:80211917-80211936 | None:intergenic | 40.0% | |
| AAGGTTACAAGTCTTACCCT+AGG | + | chr1_1:80211931-80211950 | None:intergenic | 40.0% | |
| ATGGTCTCCATTAACCTATG+AGG | + | chr1_1:80212378-80212397 | None:intergenic | 40.0% | |
| ATAGGTTAATGGAGACCATG+CGG | - | chr1_1:80212379-80212398 | Msa0047420:intron | 40.0% | |
| TGGTGCATCCATAAACTTAG+TGG | - | chr1_1:80212647-80212666 | Msa0047420:intron | 40.0% | |
| CATCTCATCTTTCTGTTTCC+AGG | - | chr1_1:80212684-80212703 | Msa0047420:intron | 40.0% | |
| ATCTTTCTGTTTCCAGGCAA+TGG | - | chr1_1:80212690-80212709 | Msa0047420:intron | 40.0% | |
| TTTCCAGGCAATGGATCTAA+TGG | - | chr1_1:80212699-80212718 | Msa0047420:intron | 40.0% | |
| TCTTCTAGCATTCAAGATCC+TGG | - | chr1_1:80212763-80212782 | Msa0047420:intron | 40.0% | |
| TTCAAGATCCTGGTGAATAC+TGG | - | chr1_1:80212773-80212792 | Msa0047420:intron | 40.0% | |
| ATTACCTTCCAGTATTCACC+AGG | + | chr1_1:80212784-80212803 | None:intergenic | 40.0% | |
| TAACGAGTATGCTGTTCCAA+AGG | - | chr1_1:80213106-80213125 | Msa0047420:intron | 40.0% | |
| !! | TTTTAAGAAAGTCGCTCCTC+AGG | - | chr1_1:80213142-80213161 | Msa0047420:intron | 40.0% |
| TGGGAACAAACTATATCCTG+AGG | + | chr1_1:80213161-80213180 | None:intergenic | 40.0% | |
| !! | TCAGGATATAGTTTGTTCCC+AGG | - | chr1_1:80213160-80213179 | Msa0047420:intron | 40.0% |
| TGGTGGAGTTATGTTGAAAG+AGG | - | chr1_1:80213292-80213311 | Msa0047420:intron | 40.0% | |
| !! | GTCAAAATCGATTTGACTCG+TGG | - | chr1_1:80213335-80213354 | Msa0047420:intron | 40.0% |
| ! | GAAAGCATAATCCTCTGGAA+AGG | - | chr1_1:80213357-80213376 | Msa0047420:intron | 40.0% |
| AGGAAGTTCAGACAAACTGA+AGG | + | chr1_1:80213423-80213442 | None:intergenic | 40.0% | |
| ! | ATCTCTTCTGGTGCATGTTT+TGG | - | chr1_1:80213467-80213486 | Msa0047420:intron | 40.0% |
| !!! | TGGCAGCATTCACTTTTTCA+AGG | - | chr1_1:80213490-80213509 | Msa0047420:intron | 40.0% |
| GTACTCAAAAAAGCCAGAAC+TGG | - | chr1_1:80213945-80213964 | Msa0047420:intron | 40.0% | |
| CCACCTATAGGATTGTTCAA+AGG | + | chr1_1:80214040-80214059 | None:intergenic | 40.0% | |
| CCTTTGAACAATCCTATAGG+TGG | - | chr1_1:80214037-80214056 | Msa0047420:intron | 40.0% | |
| TAACGGCGTTTCTTCTTATC+TGG | + | chr1_1:80214134-80214153 | None:intergenic | 40.0% | |
| AACAGCAACAGCAACAGCAA+TGG | - | chr1_1:80208058-80208077 | Msa0047420:three_prime_UTR | 45.0% | |
| ACAGCAACAGCAACAGCAAT+GGG | - | chr1_1:80208071-80208090 | Msa0047420:three_prime_UTR | 45.0% | |
| GTAACGAGGAGGCAATGAAA+CGG | + | chr1_1:80208114-80208133 | None:intergenic | 45.0% | |
| ! | CTTCGCGAGTTGAAACAACT+TGG | - | chr1_1:80208511-80208530 | Msa0047420:CDS | 45.0% |
| ATTAGTCCTTACCAGAGTCG+AGG | - | chr1_1:80209249-80209268 | Msa0047420:intron | 45.0% | |
| ATTGAATTGGTCCTCGACTC+TGG | + | chr1_1:80209263-80209282 | None:intergenic | 45.0% | |
| AGAGTCGAGGACCAATTCAA+TGG | - | chr1_1:80209262-80209281 | Msa0047420:intron | 45.0% | |
| CCCAAGCATCACCATTGAAT+TGG | + | chr1_1:80209276-80209295 | None:intergenic | 45.0% | |
| AAGTGAGTCGACTGTTATCG+AGG | - | chr1_1:80209722-80209741 | Msa0047420:CDS | 45.0% | |
| TGATTTGAGTCAGTGTGGGA+CGG | - | chr1_1:80209887-80209906 | Msa0047420:CDS | 45.0% | |
| !! | GTCTTGGCATAGGTTTGTTG+TGG | - | chr1_1:80209928-80209947 | Msa0047420:intron | 45.0% |
| GCACTAAAAAAGCCTTCCAC+CGG | + | chr1_1:80209957-80209976 | None:intergenic | 45.0% | |
| !!! | GAAGGCTTTTTTAGTGCCTC+TGG | - | chr1_1:80209960-80209979 | Msa0047420:intron | 45.0% |
| !! | GTTCAGTGCAAGGAGTGTTA+GGG | - | chr1_1:80210000-80210019 | Msa0047420:intron | 45.0% |
| !! | TTCAGTGCAAGGAGTGTTAG+GGG | - | chr1_1:80210001-80210020 | Msa0047420:intron | 45.0% |
| ! | TAGGGGCTTTGATGTTCCAT+AGG | - | chr1_1:80210018-80210037 | Msa0047420:CDS | 45.0% |
| CCACAGCAGGAAAAAACCAA+AGG | + | chr1_1:80210078-80210097 | None:intergenic | 45.0% | |
| !!! | CCTTTGGTTTTTTCCTGCTG+TGG | - | chr1_1:80210075-80210094 | Msa0047420:CDS | 45.0% |
| !! | CGTTGTGTTGGTTGTGTCAA+TGG | + | chr1_1:80210554-80210573 | None:intergenic | 45.0% |
| TTGACACAACCAACACAACG+AGG | - | chr1_1:80210554-80210573 | Msa0047420:intron | 45.0% | |
| !! | TTCACACACTTGGTGTATCC+AGG | - | chr1_1:80210753-80210772 | Msa0047420:intron | 45.0% |
| CTTGGAGTGTATTGGATTGC+TGG | - | chr1_1:80210804-80210823 | Msa0047420:intron | 45.0% | |
| GTTAGGACTTCTGCATGATG+TGG | - | chr1_1:80211088-80211107 | Msa0047420:intron | 45.0% | |
| CTGAGAATCGCTGATAACTC+TGG | + | chr1_1:80211156-80211175 | None:intergenic | 45.0% | |
| GAGTTATCAGCGATTCTCAG+TGG | - | chr1_1:80211156-80211175 | Msa0047420:intron | 45.0% | |
| ATGACTGATGCTGATAGCCA+CGG | - | chr1_1:80211669-80211688 | Msa0047420:CDS | 45.0% | |
| ! | TGGAAGCGTACTCAGGAAAT+CGG | + | chr1_1:80211738-80211757 | None:intergenic | 45.0% |
| ATGGGTGGTTATTTGGCACT+TGG | - | chr1_1:80211869-80211888 | Msa0047420:intron | 45.0% | |
| ! | GCTCCAAATTTGCTCTACCT+AGG | - | chr1_1:80211911-80211930 | Msa0047420:intron | 45.0% |
| TAGGTTAATGGAGACCATGC+GGG | - | chr1_1:80212380-80212399 | Msa0047420:intron | 45.0% | |
| AGTGGCAAACAACTTGTGGA+TGG | + | chr1_1:80212536-80212555 | None:intergenic | 45.0% | |
| CAACCATTAGATCCATTGCC+TGG | + | chr1_1:80212705-80212724 | None:intergenic | 45.0% | |
| AGATCCTGGTGAATACTGGA+AGG | - | chr1_1:80212777-80212796 | Msa0047420:intron | 45.0% | |
| ! | TCTCTAGCTTCCTTCAGTTC+TGG | + | chr1_1:80212942-80212961 | None:intergenic | 45.0% |
| ! | AGTTGATTCTGCGCATTCGA+AGG | - | chr1_1:80212961-80212980 | Msa0047420:intron | 45.0% |
| ! | TCGTGGAAAGCATAATCCTC+TGG | - | chr1_1:80213352-80213371 | Msa0047420:intron | 45.0% |
| !! | TCTTCTGGTGCATGTTTTGG+TGG | - | chr1_1:80213470-80213489 | Msa0047420:intron | 45.0% |
| !! | AATAAAATAAAAATTATACT+TGG | + | chr1_1:80210857-80210876 | None:intergenic | 5.0% |
| !!! | AAATAATTTTAAAAAATGAA+TGG | + | chr1_1:80211048-80211067 | None:intergenic | 5.0% |
| GAAGAAACGACGTCGTAACG+AGG | + | chr1_1:80208128-80208147 | None:intergenic | 50.0% | |
| ATTGGTCCTCGACTCTGGTA+AGG | + | chr1_1:80209258-80209277 | None:intergenic | 50.0% | |
| !! | CTTTCGTGATCTGGTGGGTT+TGG | - | chr1_1:80209854-80209873 | Msa0047420:CDS | 50.0% |
| TAGGTTTGCCAGGTGTGTCT+TGG | - | chr1_1:80209912-80209931 | Msa0047420:intron | 50.0% | |
| AACCTATGCCAAGACACACC+TGG | + | chr1_1:80209923-80209942 | None:intergenic | 50.0% | |
| !! | AGGTTTGTTGTGGTTTCCGG+TGG | - | chr1_1:80209938-80209957 | Msa0047420:intron | 50.0% |
| TTGTTGTGGTTTCCGGTGGA+AGG | - | chr1_1:80209942-80209961 | Msa0047420:intron | 50.0% | |
| !! | GGTTCAGTGCAAGGAGTGTT+AGG | - | chr1_1:80209999-80210018 | Msa0047420:intron | 50.0% |
| AATTGGGGACCTCGTTGTGT+TGG | + | chr1_1:80210566-80210585 | None:intergenic | 50.0% | |
| ACACAACGAGGTCCCCAATT+TGG | - | chr1_1:80210566-80210585 | Msa0047420:intron | 50.0% | |
| GTCTGTGATCTTACAGGGCA+TGG | - | chr1_1:80210939-80210958 | Msa0047420:intron | 50.0% | |
| ATCTTACAGGGCATGGAGCT+TGG | - | chr1_1:80210946-80210965 | Msa0047420:intron | 50.0% | |
| CTTCTGCATGATGTGGGACA+CGG | - | chr1_1:80211095-80211114 | Msa0047420:intron | 50.0% | |
| TTCTGCATGATGTGGGACAC+GGG | - | chr1_1:80211096-80211115 | Msa0047420:intron | 50.0% | |
| TGACTGATGCTGATAGCCAC+GGG | - | chr1_1:80211670-80211689 | Msa0047420:CDS | 50.0% | |
| ! | GGAAGCGTACTCAGGAAATC+GGG | + | chr1_1:80211737-80211756 | None:intergenic | 50.0% |
| GTGGTTATTTGGCACTTGGC+AGG | - | chr1_1:80211873-80211892 | Msa0047420:intron | 50.0% | |
| CACGAGTGGCAAACAACTTG+TGG | + | chr1_1:80212540-80212559 | None:intergenic | 50.0% | |
| TCTATACAGATCGGCACGAG+TGG | + | chr1_1:80212554-80212573 | None:intergenic | 50.0% | |
| TGGCAAGGGAGAAGTCTCAA+TGG | + | chr1_1:80212922-80212941 | None:intergenic | 50.0% | |
| TTCTCCCTTGCCAGAACTGA+AGG | - | chr1_1:80212929-80212948 | Msa0047420:intron | 50.0% | |
| ! | GCTTCCTTCAGTTCTGGCAA+GGG | + | chr1_1:80212936-80212955 | None:intergenic | 50.0% |
| ! | AGCTTCCTTCAGTTCTGGCA+AGG | + | chr1_1:80212937-80212956 | None:intergenic | 50.0% |
| TGATTCTGCGCATTCGAAGG+CGG | - | chr1_1:80212964-80212983 | Msa0047420:intron | 50.0% | |
| AAGTGGCTTATGCGCTCATC+AGG | + | chr1_1:80213889-80213908 | None:intergenic | 50.0% | |
| GACAAGATGCAGGCAACAAG+TGG | + | chr1_1:80213906-80213925 | None:intergenic | 50.0% | |
| GAAACGACGTCGTAACGAGG+AGG | + | chr1_1:80208125-80208144 | None:intergenic | 55.0% | |
| GAGTCAGTGTGGGACGGTAT+AGG | - | chr1_1:80209893-80209912 | Msa0047420:CDS | 55.0% | |
| TGGGACGGTATAGGTTTGCC+AGG | - | chr1_1:80209902-80209921 | Msa0047420:CDS | 55.0% | |
| TGCCAGGTGTGTCTTGGCAT+AGG | - | chr1_1:80209918-80209937 | Msa0047420:intron | 55.0% | |
| ! | AATCTGGAATGGACAGCGCC+TGG | + | chr1_1:80210774-80210793 | None:intergenic | 55.0% |
| ACTCGTGACTGTCGAGCTTG+TGG | - | chr1_1:80212222-80212241 | Msa0047420:intron | 55.0% | |
| TGACTGTCGAGCTTGTGGTC+TGG | - | chr1_1:80212227-80212246 | Msa0047420:intron | 55.0% | |
| GACTGTCGAGCTTGTGGTCT+GGG | - | chr1_1:80212228-80212247 | Msa0047420:intron | 55.0% | |
| AATGGAGACCATGCGGGTCT+TGG | - | chr1_1:80212386-80212405 | Msa0047420:intron | 55.0% | |
| GATTCTGCGCATTCGAAGGC+GGG | - | chr1_1:80212965-80212984 | Msa0047420:intron | 55.0% | |
| TCGAAGGCGGGATCTCTATC+AGG | - | chr1_1:80212977-80212996 | Msa0047420:intron | 55.0% | |
| GTAGCGCACAGAACTACCCG+TGG | + | chr1_1:80211689-80211708 | None:intergenic | 60.0% | |
| CTCGTCATCCAAGACCCGCA+TGG | + | chr1_1:80212397-80212416 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 80208021 | 80214433 | 80208021 | ID=Msa0047420;Name=Msa0047420 |
| chr1_1 | mRNA | 80208021 | 80214433 | 80208021 | ID=Msa0047420-mRNA-1;Parent=Msa0047420;Name=Msa0047420-mRNA-1;_AED=0.24;_eAED=0.24;_QI=68|1|0.94|1|0.94|0.89|19|227|506 |
| chr1_1 | exon | 80208021 | 80208101 | 80208021 | ID=Msa0047420-mRNA-1:exon:27749;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80208145 | 80208398 | 80208145 | ID=Msa0047420-mRNA-1:exon:27748;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80208488 | 80208598 | 80208488 | ID=Msa0047420-mRNA-1:exon:27747;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80208943 | 80208958 | 80208943 | ID=Msa0047420-mRNA-1:exon:27746;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80209076 | 80209167 | 80209076 | ID=Msa0047420-mRNA-1:exon:27745;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80209273 | 80209353 | 80209273 | ID=Msa0047420-mRNA-1:exon:27744;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80209456 | 80209557 | 80209456 | ID=Msa0047420-mRNA-1:exon:27743;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80209656 | 80209748 | 80209656 | ID=Msa0047420-mRNA-1:exon:27742;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80209854 | 80209927 | 80209854 | ID=Msa0047420-mRNA-1:exon:27741;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80210016 | 80210245 | 80210016 | ID=Msa0047420-mRNA-1:exon:27740;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80210322 | 80210389 | 80210322 | ID=Msa0047420-mRNA-1:exon:27739;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80210521 | 80210559 | 80210521 | ID=Msa0047420-mRNA-1:exon:27738;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80211002 | 80211092 | 80211002 | ID=Msa0047420-mRNA-1:exon:27737;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80211277 | 80211361 | 80211277 | ID=Msa0047420-mRNA-1:exon:27736;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80211448 | 80211499 | 80211448 | ID=Msa0047420-mRNA-1:exon:27735;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80211597 | 80211703 | 80211597 | ID=Msa0047420-mRNA-1:exon:27734;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80213922 | 80213944 | 80213922 | ID=Msa0047420-mRNA-1:exon:27733;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80214053 | 80214090 | 80214053 | ID=Msa0047420-mRNA-1:exon:27732;Parent=Msa0047420-mRNA-1 |
| chr1_1 | exon | 80214255 | 80214433 | 80214255 | ID=Msa0047420-mRNA-1:exon:27731;Parent=Msa0047420-mRNA-1 |
| chr1_1 | five_prime_UTR | 80214366 | 80214433 | 80214366 | ID=Msa0047420-mRNA-1:five_prime_utr;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80214255 | 80214365 | 80214255 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80214053 | 80214090 | 80214053 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80213922 | 80213944 | 80213922 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80211597 | 80211703 | 80211597 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80211448 | 80211499 | 80211448 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80211277 | 80211361 | 80211277 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80211002 | 80211092 | 80211002 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80210521 | 80210559 | 80210521 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80210322 | 80210389 | 80210322 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80210016 | 80210245 | 80210016 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80209854 | 80209927 | 80209854 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80209656 | 80209748 | 80209656 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80209456 | 80209557 | 80209456 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80209273 | 80209353 | 80209273 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80209076 | 80209167 | 80209076 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80208943 | 80208958 | 80208943 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80208488 | 80208598 | 80208488 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | CDS | 80208291 | 80208398 | 80208291 | ID=Msa0047420-mRNA-1:cds;Parent=Msa0047420-mRNA-1 |
| chr1_1 | three_prime_UTR | 80208145 | 80208290 | 80208145 | ID=Msa0047420-mRNA-1:three_prime_utr;Parent=Msa0047420-mRNA-1 |
| chr1_1 | three_prime_UTR | 80208021 | 80208101 | 80208021 | ID=Msa0047420-mRNA-1:three_prime_utr;Parent=Msa0047420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
