Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664020 | XP_013454546.1 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 1.78e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664020 | sp|Q6K678|HDR1_ORYSJ | 62.121 | 198 | 59 | 3 | 15 | 199 | 9 | 203 | 3.36e-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664020 | A0A072UGK4 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 8.51e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0664020 | -0.805897 | 1.069179e-49 | -8.615850e-47 |
| Msa0006700 | Msa0664020 | 0.835856 | 1.315418e-56 | -8.615850e-47 |
| Msa0015100 | Msa0664020 | 0.835607 | 1.520929e-56 | -8.615850e-47 |
| Msa0021980 | Msa0664020 | 0.845785 | 3.269899e-59 | -8.615850e-47 |
| Msa0047420 | Msa0664020 | 0.821878 | 3.193757e-53 | -8.615850e-47 |
| Msa0049330 | Msa0664020 | 0.805362 | 1.384658e-49 | -8.615850e-47 |
| Msa0049770 | Msa0664020 | 0.823284 | 1.504962e-53 | -8.615850e-47 |
| Msa0053480 | Msa0664020 | 0.824521 | 7.717598e-54 | -8.615850e-47 |
| Msa0053960 | Msa0664020 | 0.811892 | 5.577224e-51 | -8.615850e-47 |
| Msa0088550 | Msa0664020 | 0.807508 | 4.885240e-50 | -8.615850e-47 |
| Msa0093440 | Msa0664020 | 0.835426 | 1.690018e-56 | -8.615850e-47 |
| Msa0094940 | Msa0664020 | -0.831950 | 1.247991e-55 | -8.615850e-47 |
| Msa0101060 | Msa0664020 | 0.800655 | 1.301867e-48 | -8.615850e-47 |
| Msa0610380 | Msa0664020 | -0.825449 | 4.659523e-54 | -8.615850e-47 |
| Msa0613480 | Msa0664020 | 0.804980 | 1.664774e-49 | -8.615850e-47 |
| Msa0620640 | Msa0664020 | 0.815215 | 1.036179e-51 | -8.615850e-47 |
| Msa0621190 | Msa0664020 | -0.807304 | 5.396411e-50 | -8.615850e-47 |
| Msa0626230 | Msa0664020 | 0.820553 | 6.455165e-53 | -8.615850e-47 |
| Msa0632540 | Msa0664020 | 0.803889 | 2.809702e-49 | -8.615850e-47 |
| Msa0635470 | Msa0664020 | 0.848512 | 5.846181e-60 | -8.615850e-47 |
| Msa0639030 | Msa0664020 | 0.822849 | 1.900776e-53 | -8.615850e-47 |
| Msa0640380 | Msa0664020 | 0.831724 | 1.419141e-55 | -8.615850e-47 |
| Msa0641020 | Msa0664020 | 0.836392 | 9.611461e-57 | -8.615850e-47 |
| Msa0641030 | Msa0664020 | 0.815877 | 7.381080e-52 | -8.615850e-47 |
| Msa0650910 | Msa0664020 | -0.822091 | 2.851939e-53 | -8.615850e-47 |
| Msa0656270 | Msa0664020 | 0.817800 | 2.732185e-52 | -8.615850e-47 |
| Msa0656680 | Msa0664020 | 0.812445 | 4.224783e-51 | -8.615850e-47 |
| Msa0657860 | Msa0664020 | 0.810306 | 1.231088e-50 | -8.615850e-47 |
| Msa0663330 | Msa0664020 | 0.988298 | 1.790532e-173 | -8.615850e-47 |
| Msa0664020 | Msa0678820 | 0.807734 | 4.374191e-50 | -8.615850e-47 |
| Msa0664020 | Msa0679560 | 0.803642 | 3.162254e-49 | -8.615850e-47 |
| Msa0664020 | Msa0685880 | 0.812727 | 3.666168e-51 | -8.615850e-47 |
| Msa0664020 | Msa0692850 | -0.802821 | 4.677126e-49 | -8.615850e-47 |
| Msa0664020 | Msa0697600 | 0.820246 | 7.592433e-53 | -8.615850e-47 |
| Msa0664020 | Msa0700070 | 0.813328 | 2.706321e-51 | -8.615850e-47 |
| Msa0664020 | Msa0715720 | 0.834935 | 2.247164e-56 | -8.615850e-47 |
| Msa0664020 | Msa0718240 | 0.812378 | 4.369290e-51 | -8.615850e-47 |
| Msa0664020 | Msa0722930 | 0.876881 | 9.808445e-69 | -8.615850e-47 |
| Msa0664020 | Msa0723140 | 0.880205 | 6.648059e-70 | -8.615850e-47 |
| Msa0664020 | Msa0733670 | -0.853505 | 2.285638e-61 | -8.615850e-47 |
| Msa0664020 | Msa0774810 | -0.836257 | 1.040393e-56 | -8.615850e-47 |
| Msa0664020 | Msa0779540 | 0.816953 | 4.239065e-52 | -8.615850e-47 |
| Msa0664020 | Msa0791120 | 0.805283 | 1.438426e-49 | -8.615850e-47 |
| Msa0664020 | Msa0792510 | 0.801024 | 1.094579e-48 | -8.615850e-47 |
| Msa0664020 | Msa0828570 | 0.809617 | 1.731924e-50 | -8.615850e-47 |
| Msa0664020 | Msa0843280 | 0.853663 | 2.058930e-61 | -8.615850e-47 |
| Msa0664020 | Msa0883350 | 0.821496 | 3.914670e-53 | -8.615850e-47 |
| Msa0664020 | Msa0883390 | 0.819355 | 1.213069e-52 | -8.615850e-47 |
| Msa0664020 | Msa0883410 | 0.823083 | 1.676762e-53 | -8.615850e-47 |
| Msa0664020 | Msa0883660 | 0.824180 | 9.280011e-54 | -8.615850e-47 |
| Msa0664020 | Msa0883670 | 0.842800 | 2.073013e-58 | -8.615850e-47 |
| Msa0664020 | Msa0887000 | 0.810625 | 1.050095e-50 | -8.615850e-47 |
| Msa0664020 | Msa0919520 | 0.821334 | 4.267227e-53 | -8.615850e-47 |
| Msa0664020 | Msa0934820 | 0.827044 | 1.944072e-54 | -8.615850e-47 |
| Msa0664020 | Msa0951720 | 0.837036 | 6.587505e-57 | -8.615850e-47 |
| Msa0664020 | Msa0961420 | -0.805780 | 1.131525e-49 | -8.615850e-47 |
| Msa0664020 | Msa0964680 | 0.808508 | 2.992787e-50 | -8.615850e-47 |
| Msa0664020 | Msa0965520 | 0.807233 | 5.587066e-50 | -8.615850e-47 |
| Msa0664020 | Msa0984840 | 0.810747 | 9.883630e-51 | -8.615850e-47 |
| Msa0664020 | Msa0984850 | 0.827870 | 1.231896e-54 | -8.615850e-47 |
| Msa0664020 | Msa0985040 | 0.803074 | 4.146291e-49 | -8.615850e-47 |
| Msa0664020 | Msa0988500 | 0.805125 | 1.552437e-49 | -8.615850e-47 |
| Msa0664020 | Msa1008340 | 0.808473 | 3.043694e-50 | -8.615850e-47 |
| Msa0664020 | Msa1036390 | 0.802096 | 6.597032e-49 | -8.615850e-47 |
| Msa0664020 | Msa1042890 | -0.811688 | 6.177124e-51 | -8.615850e-47 |
| Msa0664020 | Msa1049950 | 0.812819 | 3.498560e-51 | -8.615850e-47 |
| Msa0664020 | Msa1076680 | 0.807048 | 6.112738e-50 | -8.615850e-47 |
| Msa0664020 | Msa1080790 | 0.817798 | 2.735776e-52 | -8.615850e-47 |
| Msa0664020 | Msa1081710 | 0.807184 | 5.720778e-50 | -8.615850e-47 |
| Msa0664020 | Msa1108780 | 0.840791 | 7.029238e-58 | -8.615850e-47 |
| Msa0664020 | Msa1113210 | 0.801393 | 9.198375e-49 | -8.615850e-47 |
| Msa0664020 | Msa1113280 | 0.804444 | 2.154216e-49 | -8.615850e-47 |
| Msa0664020 | Msa1118930 | 0.819067 | 1.410607e-52 | -8.615850e-47 |
| Msa0664020 | Msa1139240 | 0.809694 | 1.666825e-50 | -8.615850e-47 |
| Msa0664020 | Msa1166170 | 0.806291 | 8.832584e-50 | -8.615850e-47 |
| Msa0664020 | Msa1166270 | 0.808686 | 2.741262e-50 | -8.615850e-47 |
| Msa0664020 | Msa1182830 | 0.802015 | 6.855287e-49 | -8.615850e-47 |
| Msa0664020 | Msa1195750 | 0.803786 | 2.952111e-49 | -8.615850e-47 |
| Msa0664020 | Msa1204980 | -0.811121 | 8.200778e-51 | -8.615850e-47 |
| Msa0664020 | Msa1205010 | -0.803299 | 3.725128e-49 | -8.615850e-47 |
| Msa0664020 | Msa1208340 | 0.825353 | 4.910061e-54 | -8.615850e-47 |
| Msa0664020 | Msa1221200 | -0.854806 | 9.632598e-62 | -8.615850e-47 |
| Msa0664020 | Msa1237260 | 0.849746 | 2.653298e-60 | -8.615850e-47 |
| Msa0664020 | Msa1256540 | -0.807068 | 6.053238e-50 | -8.615850e-47 |
| Msa0664020 | Msa1258950 | 0.803223 | 3.862924e-49 | -8.615850e-47 |
| Msa0664020 | Msa1289990 | 0.810946 | 8.949076e-51 | -8.615850e-47 |
| Msa0664020 | Msa1296960 | -0.804873 | 1.753020e-49 | -8.615850e-47 |
| Msa0664020 | Msa1311150 | 0.815581 | 8.593211e-52 | -8.615850e-47 |
| Msa0664020 | Msa1312680 | 0.804435 | 2.163224e-49 | -8.615850e-47 |
| Msa0664020 | Msa1317710 | 0.823186 | 1.585868e-53 | -8.615850e-47 |
| Msa0664020 | Msa1328600 | 0.807401 | 5.147611e-50 | -8.615850e-47 |
| Msa0664020 | Msa1335970 | -0.824682 | 7.071559e-54 | -8.615850e-47 |
| Msa0664020 | Msa1340620 | 0.800173 | 1.631675e-48 | -8.615850e-47 |
| Msa0664020 | Msa1352060 | 0.809818 | 1.567675e-50 | -8.615850e-47 |
| Msa0664020 | Msa1358870 | -0.839838 | 1.246801e-57 | -8.615850e-47 |
| Msa0664020 | Msa1365040 | -0.829899 | 3.976715e-55 | -8.615850e-47 |
| Msa0664020 | Msa1370630 | 0.803170 | 3.961533e-49 | -8.615850e-47 |
| Msa0664020 | Msa1373950 | 0.802406 | 5.695965e-49 | -8.615850e-47 |
| Msa0664020 | Msa1386250 | 0.801648 | 8.155206e-49 | -8.615850e-47 |
| Msa0664020 | Msa1410180 | 0.810287 | 1.242469e-50 | -8.615850e-47 |
| Msa0664020 | Msa1424510 | 0.817631 | 2.983115e-52 | -8.615850e-47 |
| Msa0664020 | Msa1438820 | 0.806657 | 7.393742e-50 | -8.615850e-47 |
| Msa0664020 | Msa1445250 | 0.839686 | 1.366024e-57 | -8.615850e-47 |
| Msa0664020 | Msa1457020 | 0.801319 | 9.524583e-49 | -8.615850e-47 |
| Msa0664020 | Msa1457070 | 0.804043 | 2.610351e-49 | -8.615850e-47 |
| Msa0664020 | Msa1457180 | 0.814848 | 1.249999e-51 | -8.615850e-47 |
| Msa0664020 | Msa1457670 | -0.831851 | 1.320145e-55 | -8.615850e-47 |
| Msa0664020 | Msa1460310 | -0.816818 | 4.545535e-52 | -8.615850e-47 |
| Msa0664020 | Msa1465890 | -0.825077 | 5.704434e-54 | -8.615850e-47 |
| Msa0135360 | Msa0664020 | 0.808712 | 2.706330e-50 | -8.615850e-47 |
| Msa0146910 | Msa0664020 | -0.808592 | 2.870740e-50 | -8.615850e-47 |
| Msa0153440 | Msa0664020 | 0.826098 | 3.268016e-54 | -8.615850e-47 |
| Msa0181410 | Msa0664020 | 0.861291 | 1.137278e-63 | -8.615850e-47 |
| Msa0185640 | Msa0664020 | -0.807287 | 5.441373e-50 | -8.615850e-47 |
| Msa0198440 | Msa0664020 | 0.803285 | 3.749815e-49 | -8.615850e-47 |
| Msa0204210 | Msa0664020 | 0.804727 | 1.880400e-49 | -8.615850e-47 |
| Msa0213090 | Msa0664020 | 0.829307 | 5.539320e-55 | -8.615850e-47 |
| Msa0226620 | Msa0664020 | -0.823429 | 1.391500e-53 | -8.615850e-47 |
| Msa0365360 | Msa0664020 | 0.801426 | 9.054463e-49 | -8.615850e-47 |
| Msa0379820 | Msa0664020 | 0.831372 | 1.732667e-55 | -8.615850e-47 |
| Msa0379850 | Msa0664020 | 0.805039 | 1.617702e-49 | -8.615850e-47 |
| Msa0389050 | Msa0664020 | 0.803284 | 3.750839e-49 | -8.615850e-47 |
| Msa0411000 | Msa0664020 | 0.853395 | 2.458063e-61 | -8.615850e-47 |
| Msa0419620 | Msa0664020 | -0.806324 | 8.693361e-50 | -8.615850e-47 |
| Msa0427380 | Msa0664020 | -0.863930 | 1.750512e-64 | -8.615850e-47 |
| Msa0429170 | Msa0664020 | 0.820497 | 6.647040e-53 | -8.615850e-47 |
| Msa0455230 | Msa0664020 | 0.842481 | 2.518081e-58 | -8.615850e-47 |
| Msa0457370 | Msa0664020 | 0.806566 | 7.728253e-50 | -8.615850e-47 |
| Msa0465680 | Msa0664020 | -0.804458 | 2.139292e-49 | -8.615850e-47 |
| Msa0467740 | Msa0664020 | -0.844345 | 8.006775e-59 | -8.615850e-47 |
| Msa0253370 | Msa0664020 | 0.833239 | 5.979202e-56 | -8.615850e-47 |
| Msa0260270 | Msa0664020 | -0.819810 | 9.551262e-53 | -8.615850e-47 |
| Msa0264940 | Msa0664020 | -0.810332 | 1.215178e-50 | -8.615850e-47 |
| Msa0265630 | Msa0664020 | 0.806308 | 8.763087e-50 | -8.615850e-47 |
| Msa0278670 | Msa0664020 | 0.803611 | 3.209256e-49 | -8.615850e-47 |
| Msa0302990 | Msa0664020 | -0.816668 | 4.911296e-52 | -8.615850e-47 |
| Msa0304310 | Msa0664020 | -0.804336 | 2.268446e-49 | -8.615850e-47 |
| Msa0304740 | Msa0664020 | 0.804353 | 2.250232e-49 | -8.615850e-47 |
| Msa0304990 | Msa0664020 | 0.816172 | 6.340443e-52 | -8.615850e-47 |
| Msa0311330 | Msa0664020 | 0.813159 | 2.947516e-51 | -8.615850e-47 |
| Msa0330400 | Msa0664020 | 0.825974 | 3.497484e-54 | -8.615850e-47 |
| Msa0331590 | Msa0664020 | 0.802061 | 6.707469e-49 | -8.615850e-47 |
| Msa0334170 | Msa0664020 | 0.824811 | 6.593187e-54 | -8.615850e-47 |
| Msa0340530 | Msa0664020 | 0.814977 | 1.170606e-51 | -8.615850e-47 |
| Msa0342340 | Msa0664020 | -0.806782 | 6.959553e-50 | -8.615850e-47 |
| Msa0363460 | Msa0664020 | 0.842573 | 2.380926e-58 | -8.615850e-47 |
| Msa0496460 | Msa0664020 | 0.802589 | 5.221591e-49 | -8.615850e-47 |
| Msa0501470 | Msa0664020 | 0.810586 | 1.071002e-50 | -8.615850e-47 |
| Msa0514130 | Msa0664020 | -0.851794 | 7.037826e-61 | -8.615850e-47 |
| Msa0527900 | Msa0664020 | 0.913230 | 7.826062e-84 | -8.615850e-47 |
| Msa0543900 | Msa0664020 | 0.825960 | 3.525536e-54 | -8.615850e-47 |
| Msa0544930 | Msa0664020 | 0.831549 | 1.567732e-55 | -8.615850e-47 |
| Msa0549740 | Msa0664020 | 0.814740 | 1.320971e-51 | -8.615850e-47 |
| Msa0563140 | Msa0664020 | 0.808383 | 3.181395e-50 | -8.615850e-47 |
| Msa0564490 | Msa0664020 | 0.833688 | 4.620295e-56 | -8.615850e-47 |
| Msa0566010 | Msa0664020 | 0.801582 | 8.413885e-49 | -8.615850e-47 |
| Msa0576600 | Msa0664020 | 0.800038 | 1.738446e-48 | -8.615850e-47 |
| Msa0586150 | Msa0664020 | 0.930412 | 1.702094e-93 | -8.615850e-47 |
| Msa0589610 | Msa0664020 | 0.815592 | 8.541075e-52 | -8.615850e-47 |
| Msa0599770 | Msa0664020 | 0.810723 | 1.000068e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664020 | MtrunA17_Chr4g0001971 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 1.64e-146 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664020 | AT1G80940.1 | 66.497 | 197 | 52 | 4 | 2 | 190 | 14 | 204 | 6.44e-79 | 235 |
| Msa0664020 | AT1G80940.3 | 84.252 | 127 | 19 | 1 | 65 | 190 | 16 | 142 | 6.90e-70 | 210 |
| Msa0664020 | AT1G80940.2 | 60.690 | 145 | 43 | 4 | 2 | 138 | 14 | 152 | 2.32e-48 | 156 |
| Msa0664020 | AT1G80940.4 | 52.033 | 123 | 45 | 4 | 2 | 116 | 14 | 130 | 2.26e-30 | 110 |
Find 66 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCATCTCCCACTTCT+TGG | 0.189164 | 4_4:-2999716 | None:intergenic |
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4_4:-2999217 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4_4:-2999062 | None:intergenic |
| TCATTATTTGTTGCATGTTT+TGG | 0.214378 | 4_4:+2997068 | Msa0664020:five_prime_UTR |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4_4:+2999007 | Msa0664020:CDS |
| TATCAGCATCTTTGTTTGTA+AGG | 0.306286 | 4_4:+2996957 | None:intergenic |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4_4:-2999053 | None:intergenic |
| AGGAGTATCTTCCGGGTTGC+CGG | 0.334216 | 4_4:-2998961 | None:intergenic |
| GAGTCCTGCATTTCCACATT+AGG | 0.337528 | 4_4:-2998984 | None:intergenic |
| CATTAGGAGGAGTATCTTCC+GGG | 0.367822 | 4_4:-2998968 | None:intergenic |
| AAAATCTGAGGAGGTGAAAC+AGG | 0.371893 | 4_4:-2997152 | None:intergenic |
| TATAATATAATTCATCTTCA+AGG | 0.398042 | 4_4:-2999747 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4_4:-2999737 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4_4:+2997118 | Msa0664020:exon |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4_4:+2999137 | Msa0664020:CDS |
| TGTAAGGTTGTTGAAAACTT+TGG | 0.430176 | 4_4:+2996973 | Msa0664020:five_prime_UTR |
| ATATAGTAGTAGTATCAATA+TGG | 0.432236 | 4_4:+2999849 | Msa0664020:three_prime_UTR |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4_4:-2999140 | None:intergenic |
| GGAGTATCTTCCGGGTTGCC+GGG | 0.439882 | 4_4:-2998960 | None:intergenic |
| TTGCAGGATAGAGAAATAGA+TGG | 0.443528 | 4_4:+2999522 | Msa0664020:intron |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4_4:+2999683 | Msa0664020:CDS |
| TATAGTAGTAGTATCAATAT+GGG | 0.468650 | 4_4:+2999850 | Msa0664020:three_prime_UTR |
| TCCTCCTAATGTGGAAATGC+AGG | 0.470382 | 4_4:+2998980 | Msa0664020:CDS |
| GGCCAAGAAGTGGGAGATGA+AGG | 0.479804 | 4_4:+2999714 | Msa0664020:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4_4:-2999116 | None:intergenic |
| AGCTAGCGGGAGGAATTTAG+AGG | 0.489631 | 4_4:+2998908 | Msa0664020:intron |
| ACATTAGGAGGAGTATCTTC+CGG | 0.492696 | 4_4:-2998969 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4_4:+2999539 | Msa0664020:CDS |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4_4:-2999090 | None:intergenic |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4_4:+2999019 | Msa0664020:CDS |
| TCCTGCATTTCCACATTAGG+AGG | 0.532301 | 4_4:-2998981 | None:intergenic |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4_4:+2997176 | Msa0664020:CDS |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4_4:+2999125 | Msa0664020:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4_4:-2997164 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4_4:+2999693 | Msa0664020:CDS |
| TAAAACACCACCCGGCAACC+CGG | 0.548227 | 4_4:+2998950 | Msa0664020:CDS |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4_4:+2997122 | Msa0664020:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4_4:+2999553 | Msa0664020:CDS |
| GGAAGATACTCCTCCTAATG+TGG | 0.567411 | 4_4:+2998971 | Msa0664020:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4_4:+2999124 | Msa0664020:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4_4:-2999082 | None:intergenic |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4_4:-2999009 | None:intergenic |
| AAGCACAAGCATGCACACAC+TGG | 0.591411 | 4_4:-2999773 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4_4:+2999214 | Msa0664020:CDS |
| ATAGTAGTAGTATCAATATG+GGG | 0.595387 | 4_4:+2999851 | Msa0664020:three_prime_UTR |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4_4:+2999129 | Msa0664020:CDS |
| ACGTGTTCACCACAGCTAGC+GGG | 0.599138 | 4_4:+2998895 | Msa0664020:intron |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4_4:+2999704 | Msa0664020:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4_4:-2999110 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4_4:-2999096 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4_4:+2999545 | Msa0664020:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4_4:+2999705 | Msa0664020:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4_4:-2999042 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4_4:+2999584 | Msa0664020:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4_4:-2999089 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4_4:+2999186 | Msa0664020:CDS |
| GATACAGCTAAAACACCACC+CGG | 0.658820 | 4_4:+2998942 | Msa0664020:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4_4:+2999542 | Msa0664020:CDS |
| GTATCTTCCGGGTTGCCGGG+TGG | 0.662272 | 4_4:-2998957 | None:intergenic |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4_4:-2999113 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4_4:+2999059 | Msa0664020:CDS |
| TAGTAGTAGTATCAATATGG+GGG | 0.676157 | 4_4:+2999852 | Msa0664020:three_prime_UTR |
| ATATGCACTCTAATAACACA+CGG | 0.682043 | 4_4:-2999830 | None:intergenic |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4_4:-2997161 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4_4:+2999169 | Msa0664020:CDS |
| TGTTCACCACAGCTAGCGGG+AGG | 0.700309 | 4_4:+2998898 | Msa0664020:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACTACAAATAATATA+TGG | - | chr4_4:2997393-2997412 | None:intergenic | 10.0% |
| !! | ATATATTATTTGTAGTATTT+AGG | + | chr4_4:2997392-2997411 | Msa0664020:intron | 10.0% |
| !!! | TTTTTGTATGATAAAAATTT+TGG | - | chr4_4:2997736-2997755 | None:intergenic | 10.0% |
| !!! | CAAAAATAACAATTTTATTA+AGG | - | chr4_4:2998082-2998101 | None:intergenic | 10.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | + | chr4_4:2997338-2997357 | Msa0664020:intron | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | + | chr4_4:2997709-2997728 | Msa0664020:intron | 15.0% |
| !! | TTACATGAAAATAATAGTAT+TGG | - | chr4_4:2997865-2997884 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | - | chr4_4:2998034-2998053 | None:intergenic | 15.0% |
| !! | AAAATTGAAACATTCATATA+TGG | - | chr4_4:2998333-2998352 | None:intergenic | 15.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | - | chr4_4:2998389-2998408 | None:intergenic | 15.0% |
| !! | TATAATATAATTCATCTTCA+AGG | - | chr4_4:2999750-2999769 | None:intergenic | 15.0% |
| !! | TACTACAAATAATATATGGT+GGG | - | chr4_4:2997389-2997408 | None:intergenic | 20.0% |
| !! | ATACTACAAATAATATATGG+TGG | - | chr4_4:2997390-2997409 | None:intergenic | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | + | chr4_4:2997510-2997529 | Msa0664020:intron | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | - | chr4_4:2997705-2997724 | None:intergenic | 20.0% |
| !!! | AATTGTTATTTTTGTGAACA+TGG | + | chr4_4:2998088-2998107 | Msa0664020:intron | 20.0% |
| !!! | ATTTTACATCTTCTTTTTCA+AGG | + | chr4_4:2998399-2998418 | Msa0664020:intron | 20.0% |
| !!! | TTTTTCAAGGAAACTTAAAT+GGG | + | chr4_4:2998412-2998431 | Msa0664020:intron | 20.0% |
| !! | TTTACTATCTCTAAATAAGA+AGG | + | chr4_4:2998589-2998608 | Msa0664020:intron | 20.0% |
| !! | TGGTTACACTTAAATTATTA+CGG | + | chr4_4:2998700-2998719 | Msa0664020:intron | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | + | chr4_4:2998870-2998889 | Msa0664020:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | - | chr4_4:2999255-2999274 | None:intergenic | 20.0% |
| !! | ATATAGTAGTAGTATCAATA+TGG | + | chr4_4:2999849-2999868 | Msa0664020:three_prime_UTR | 20.0% |
| !! | TATAGTAGTAGTATCAATAT+GGG | + | chr4_4:2999850-2999869 | Msa0664020:three_prime_UTR | 20.0% |
| !!! | TCATTATTTGTTGCATGTTT+TGG | + | chr4_4:2997068-2997087 | Msa0664020:five_prime_UTR | 25.0% |
| ! | TAAAAGTTGAAGAACAGAAA+AGG | - | chr4_4:2997204-2997223 | None:intergenic | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | + | chr4_4:2997550-2997569 | Msa0664020:intron | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | + | chr4_4:2997675-2997694 | Msa0664020:intron | 25.0% |
| !! | ATTGAACATGTTTTCAATCT+AGG | - | chr4_4:2997817-2997836 | None:intergenic | 25.0% |
| ! | AATTTAAGCACGATTAACTT+CGG | - | chr4_4:2997951-2997970 | None:intergenic | 25.0% |
| ! | ATTGAATTTCTTGATGTACA+AGG | + | chr4_4:2998124-2998143 | Msa0664020:intron | 25.0% |
| ! | TTGAATTTCTTGATGTACAA+GGG | + | chr4_4:2998125-2998144 | Msa0664020:intron | 25.0% |
| ! | ATATGGTAGATGAACAATAA+AGG | - | chr4_4:2998316-2998335 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAGGAAACTTAAA+TGG | + | chr4_4:2998411-2998430 | Msa0664020:intron | 25.0% |
| !!! | ATTTTCCTTCTTATTTTCTG+CGG | + | chr4_4:2998539-2998558 | Msa0664020:intron | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | - | chr4_4:2999267-2999286 | None:intergenic | 25.0% |
| ! | CAAGTGGATAAAAAATAAAC+TGG | - | chr4_4:2999381-2999400 | None:intergenic | 25.0% |
| ! | ATAGTAGTAGTATCAATATG+GGG | + | chr4_4:2999851-2999870 | Msa0664020:three_prime_UTR | 25.0% |
| TGTAAGGTTGTTGAAAACTT+TGG | + | chr4_4:2996973-2996992 | Msa0664020:five_prime_UTR | 30.0% | |
| TAAAACCAAAAAGACTTGCA+AGG | + | chr4_4:2997021-2997040 | Msa0664020:five_prime_UTR | 30.0% | |
| ! | ATTTTCCTTGCAAGTCTTTT+TGG | - | chr4_4:2997029-2997048 | None:intergenic | 30.0% |
| !!! | TGCATGTTTTGGAATATTTC+TGG | + | chr4_4:2997079-2997098 | Msa0664020:five_prime_UTR | 30.0% |
| !!! | GGAAAATTTTGAAGCAACTA+TGG | + | chr4_4:2997100-2997119 | Msa0664020:exon | 30.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | + | chr4_4:2997671-2997690 | Msa0664020:intron | 30.0% |
| ! | ATAGTATTGGACTATTGTGT+TGG | - | chr4_4:2997852-2997871 | None:intergenic | 30.0% |
| ! | TGTTGGTTACTTTCATAAAG+AGG | - | chr4_4:2998017-2998036 | None:intergenic | 30.0% |
| TGAATTTCTTGATGTACAAG+GGG | + | chr4_4:2998126-2998145 | Msa0664020:intron | 30.0% | |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | + | chr4_4:2998190-2998209 | Msa0664020:intron | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | + | chr4_4:2998191-2998210 | Msa0664020:intron | 30.0% |
| ATTAAGAAGTCACATATGCA+AGG | - | chr4_4:2998278-2998297 | None:intergenic | 30.0% | |
| AAATAAGAAGGAAGAAAACC+TGG | + | chr4_4:2998601-2998620 | Msa0664020:intron | 30.0% | |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | - | chr4_4:2999056-2999075 | None:intergenic | 30.0% |
| TAACCTTTCTGTTCATTTCT+TGG | - | chr4_4:2999220-2999239 | None:intergenic | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | - | chr4_4:2999247-2999266 | None:intergenic | 30.0% | |
| GTGGATAAAAAATAAACTGG+TGG | - | chr4_4:2999378-2999397 | None:intergenic | 30.0% | |
| !!! | CAACACTTTTTCTCGTATAT+TGG | - | chr4_4:2999430-2999449 | None:intergenic | 30.0% |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | + | chr4_4:2999440-2999459 | Msa0664020:intron | 30.0% |
| ATATGCACTCTAATAACACA+CGG | - | chr4_4:2999833-2999852 | None:intergenic | 30.0% | |
| TAGTAGTAGTATCAATATGG+GGG | + | chr4_4:2999852-2999871 | Msa0664020:three_prime_UTR | 30.0% | |
| !!! | TTTTGAAGCAACTATGGTCA+TGG | + | chr4_4:2997106-2997125 | Msa0664020:exon | 35.0% |
| CTAGATTTCCAGAAAATCTG+AGG | - | chr4_4:2997167-2997186 | None:intergenic | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | + | chr4_4:2997176-2997195 | Msa0664020:CDS | 35.0% | |
| TTATTCAGTGTAACCAAGAG+AGG | + | chr4_4:2997599-2997618 | Msa0664020:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | + | chr4_4:2997632-2997651 | Msa0664020:intron | 35.0% | |
| CAACACAAAAACTTTCTAGG+TGG | - | chr4_4:2997975-2997994 | None:intergenic | 35.0% | |
| GTGCAACACAAAAACTTTCT+AGG | - | chr4_4:2997978-2997997 | None:intergenic | 35.0% | |
| GAATTTCTTGATGTACAAGG+GGG | + | chr4_4:2998127-2998146 | Msa0664020:intron | 35.0% | |
| AATGGGAGATGAATCACTAA+AGG | + | chr4_4:2998429-2998448 | Msa0664020:intron | 35.0% | |
| TATCACCGCAGAAAATAAGA+AGG | - | chr4_4:2998547-2998566 | None:intergenic | 35.0% | |
| GCACAAACAATTCAGATTGA+AGG | + | chr4_4:2998640-2998659 | Msa0664020:intron | 35.0% | |
| ! | AGGTTCTAATGGTTCAAACA+AGG | - | chr4_4:2999045-2999064 | None:intergenic | 35.0% |
| GAACCTATAAAGAACAGCAA+CGG | + | chr4_4:2999059-2999078 | Msa0664020:CDS | 35.0% | |
| ! | TAGTTTGCAGACTCAAAATC+AGG | - | chr4_4:2999119-2999138 | None:intergenic | 35.0% |
| AAAGCTTGTCAATGTTGATG+TGG | + | chr4_4:2999169-2999188 | Msa0664020:CDS | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | + | chr4_4:2999214-2999233 | Msa0664020:CDS | 35.0% | |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | + | chr4_4:2999435-2999454 | Msa0664020:intron | 35.0% |
| TTGCAGGATAGAGAAATAGA+TGG | + | chr4_4:2999522-2999541 | Msa0664020:intron | 35.0% | |
| GTTACAAGAAACTGAGCAAA+TGG | + | chr4_4:2999683-2999702 | Msa0664020:CDS | 35.0% | |
| TTCATCTTCAAGGTTCATCT+TGG | - | chr4_4:2999740-2999759 | None:intergenic | 35.0% | |
| !! | CTTGCTTTTCTCAAAAACAG+AGG | + | chr4_4:2999892-2999911 | Msa0664020:three_prime_UTR | 35.0% |
| TATGGTCATGGATGATGCTT+TGG | + | chr4_4:2997118-2997137 | Msa0664020:exon | 40.0% | |
| AAAATCTGAGGAGGTGAAAC+AGG | - | chr4_4:2997155-2997174 | None:intergenic | 40.0% | |
| ! | TTTCACCTCCTCAGATTTTC+TGG | + | chr4_4:2997156-2997175 | Msa0664020:CDS | 40.0% |
| GATTTCCAGAAAATCTGAGG+AGG | - | chr4_4:2997164-2997183 | None:intergenic | 40.0% | |
| ! | AAGAGGTGCAACACATAAAG+CGG | - | chr4_4:2998000-2998019 | None:intergenic | 40.0% |
| TAAAAACCCATGTGGCTGTT+TGG | + | chr4_4:2998152-2998171 | Msa0664020:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | - | chr4_4:2998266-2998285 | None:intergenic | 40.0% | |
| !! | GTGTGTTTGCTATCCAACAT+CGG | + | chr4_4:2998662-2998681 | Msa0664020:intron | 40.0% |
| ATGCTTCATAGATAGATCCC+TGG | + | chr4_4:2998758-2998777 | Msa0664020:intron | 40.0% | |
| !!! | CTCTTTTTTGAACCCTACCA+TGG | - | chr4_4:2998784-2998803 | None:intergenic | 40.0% |
| !! | ACATTAGGAGGAGTATCTTC+CGG | - | chr4_4:2998972-2998991 | None:intergenic | 40.0% |
| TTTGCAGACTCAAAATCAGG+TGG | - | chr4_4:2999116-2999135 | None:intergenic | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | + | chr4_4:2999124-2999143 | Msa0664020:CDS | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | + | chr4_4:2999125-2999144 | Msa0664020:CDS | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | - | chr4_4:2999314-2999333 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAG+TGG | - | chr4_4:2999397-2999416 | None:intergenic | 40.0% | |
| ! | TATTGCTAGCATTTTCCGCA+TGG | + | chr4_4:2999469-2999488 | Msa0664020:intron | 40.0% |
| ! | CATTTGACGACTTTTGTTGC+AGG | + | chr4_4:2999506-2999525 | Msa0664020:intron | 40.0% |
| ! | GTCATGGATGATGCTTTGGA+TGG | + | chr4_4:2997122-2997141 | Msa0664020:CDS | 45.0% |
| ! | GAGAGAGAAGCGTACAATAG+TGG | + | chr4_4:2997621-2997640 | Msa0664020:intron | 45.0% |
| AGGGGGAATAAAAACCCATG+TGG | + | chr4_4:2998144-2998163 | Msa0664020:intron | 45.0% | |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | - | chr4_4:2998234-2998253 | None:intergenic | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | - | chr4_4:2998237-2998256 | None:intergenic | 45.0% |
| CATGGAGGCTACACTAAAGA+GGG | - | chr4_4:2998248-2998267 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | - | chr4_4:2998249-2998268 | None:intergenic | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | + | chr4_4:2998249-2998268 | Msa0664020:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | - | chr4_4:2998263-2998282 | None:intergenic | 45.0% | |
| GCTACATAGAGCTCTATACC+AGG | - | chr4_4:2998622-2998641 | None:intergenic | 45.0% | |
| GATACAGCTAAAACACCACC+CGG | + | chr4_4:2998942-2998961 | Msa0664020:CDS | 45.0% | |
| !! | CATTAGGAGGAGTATCTTCC+GGG | - | chr4_4:2998971-2998990 | None:intergenic | 45.0% |
| GGAAGATACTCCTCCTAATG+TGG | + | chr4_4:2998971-2998990 | Msa0664020:CDS | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | + | chr4_4:2998980-2998999 | Msa0664020:CDS | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | - | chr4_4:2998984-2999003 | None:intergenic | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | - | chr4_4:2998987-2999006 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | + | chr4_4:2999007-2999026 | Msa0664020:CDS | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | - | chr4_4:2999012-2999031 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | + | chr4_4:2999129-2999148 | Msa0664020:CDS | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | + | chr4_4:2999137-2999156 | Msa0664020:CDS | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | - | chr4_4:2999143-2999162 | None:intergenic | 45.0% | |
| ! | GTCGTCAAATGCATTAGCCT+CGG | - | chr4_4:2999497-2999516 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | + | chr4_4:2999539-2999558 | Msa0664020:CDS | 45.0% |
| ACTGAGCAAATGGCAGATGA+AGG | + | chr4_4:2999693-2999712 | Msa0664020:CDS | 45.0% | |
| TACGCTTCTCTCTCCTCTCT+TGG | - | chr4_4:2997615-2997634 | None:intergenic | 50.0% | |
| AACCCATGTGGCTGTTTGGA+TGG | + | chr4_4:2998156-2998175 | Msa0664020:intron | 50.0% | |
| CACCATCCAAACAGCCACAT+GGG | - | chr4_4:2998161-2998180 | None:intergenic | 50.0% | |
| ACACCATCCAAACAGCCACA+TGG | - | chr4_4:2998162-2998181 | None:intergenic | 50.0% | |
| AGTTATGGGACAGCTAACCC+TGG | + | chr4_4:2998205-2998224 | Msa0664020:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | - | chr4_4:2998244-2998263 | None:intergenic | 50.0% | |
| ATCGGCACGACACGATACAT+TGG | + | chr4_4:2998680-2998699 | Msa0664020:intron | 50.0% | |
| ACTGACACGACACTGACACA+TGG | - | chr4_4:2998729-2998748 | None:intergenic | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | + | chr4_4:2998764-2998783 | Msa0664020:intron | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | + | chr4_4:2998769-2998788 | Msa0664020:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | - | chr4_4:2998778-2998797 | None:intergenic | 50.0% | |
| ! | TTTTGAACCCTACCATGGCC+AGG | - | chr4_4:2998779-2998798 | None:intergenic | 50.0% |
| AACGTGTTCACCACAGCTAG+CGG | + | chr4_4:2998894-2998913 | Msa0664020:intron | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | - | chr4_4:2998907-2998926 | None:intergenic | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | + | chr4_4:2998908-2998927 | Msa0664020:intron | 50.0% | |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | - | chr4_4:2999065-2999084 | None:intergenic | 50.0% |
| AGGTGGAGGAAGCAAAGACT+CGG | - | chr4_4:2999099-2999118 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | - | chr4_4:2999113-2999132 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | + | chr4_4:2999186-2999205 | Msa0664020:CDS | 50.0% |
| TGGACTAAACGAACAGCTGG+AGG | + | chr4_4:2999542-2999561 | Msa0664020:CDS | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | + | chr4_4:2999545-2999564 | Msa0664020:CDS | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | + | chr4_4:2999705-2999724 | Msa0664020:CDS | 50.0% | |
| AAGCACAAGCATGCACACAC+TGG | - | chr4_4:2999776-2999795 | None:intergenic | 50.0% | |
| TTGGTTGAAGGTGGAGGCCA+GGG | - | chr4_4:2998225-2998244 | None:intergenic | 55.0% | |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | - | chr4_4:2998231-2998250 | None:intergenic | 55.0% |
| ! | GTATCGTGTCGTGCCGATGT+TGG | - | chr4_4:2998678-2998697 | None:intergenic | 55.0% |
| GATAGATCCCTGGCCATGGT+AGG | + | chr4_4:2998768-2998787 | Msa0664020:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | + | chr4_4:2998895-2998914 | Msa0664020:intron | 55.0% | |
| TAAAACACCACCCGGCAACC+CGG | + | chr4_4:2998950-2998969 | Msa0664020:CDS | 55.0% | |
| !! | AGGAGTATCTTCCGGGTTGC+CGG | - | chr4_4:2998964-2998983 | None:intergenic | 55.0% |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | + | chr4_4:2999019-2999038 | Msa0664020:CDS | 55.0% |
| GGAAGCAAAGACTCGGCAGA+GGG | - | chr4_4:2999092-2999111 | None:intergenic | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | - | chr4_4:2999093-2999112 | None:intergenic | 55.0% | |
| ! | GCATTTTCCGCATGGAACCG+AGG | + | chr4_4:2999477-2999496 | Msa0664020:intron | 55.0% |
| ! | GCATTAGCCTCGGTTCCATG+CGG | - | chr4_4:2999487-2999506 | None:intergenic | 55.0% |
| AACAGCTGGAGGAGGATTCG+CGG | + | chr4_4:2999553-2999572 | Msa0664020:CDS | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | + | chr4_4:2999584-2999603 | Msa0664020:CDS | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | + | chr4_4:2999704-2999723 | Msa0664020:CDS | 55.0% | |
| GGCCAAGAAGTGGGAGATGA+AGG | + | chr4_4:2999714-2999733 | Msa0664020:CDS | 55.0% | |
| GGCCTTCATCTCCCACTTCT+TGG | - | chr4_4:2999719-2999738 | None:intergenic | 55.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | - | chr4_4:2998226-2998245 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | + | chr4_4:2998898-2998917 | Msa0664020:intron | 60.0% | |
| ! | GGAGTATCTTCCGGGTTGCC+GGG | - | chr4_4:2998963-2998982 | None:intergenic | 60.0% |
| AAGACTCGGCAGAGGGTCGT+CGG | - | chr4_4:2999085-2999104 | None:intergenic | 60.0% | |
| GTATCTTCCGGGTTGCCGGG+TGG | - | chr4_4:2998960-2998979 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2996966 | 3000015 | 2996966 | ID=Msa0664020;Name=Msa0664020 |
| chr4_4 | mRNA | 2996966 | 3000015 | 2996966 | ID=Msa0664020-mRNA-1;Parent=Msa0664020;Name=Msa0664020-mRNA-1;_AED=0.31;_eAED=0.31;_QI=153|1|1|1|1|1|3|263|209 |
| chr4_4 | exon | 2996966 | 2997197 | 2996966 | ID=Msa0664020-mRNA-1:exon:882;Parent=Msa0664020-mRNA-1 |
| chr4_4 | exon | 2998910 | 2999235 | 2998910 | ID=Msa0664020-mRNA-1:exon:883;Parent=Msa0664020-mRNA-1 |
| chr4_4 | exon | 2999528 | 3000015 | 2999528 | ID=Msa0664020-mRNA-1:exon:884;Parent=Msa0664020-mRNA-1 |
| chr4_4 | five_prime_UTR | 2996966 | 2997118 | 2996966 | ID=Msa0664020-mRNA-1:five_prime_utr;Parent=Msa0664020-mRNA-1 |
| chr4_4 | CDS | 2997119 | 2997197 | 2997119 | ID=Msa0664020-mRNA-1:cds;Parent=Msa0664020-mRNA-1 |
| chr4_4 | CDS | 2998910 | 2999235 | 2998910 | ID=Msa0664020-mRNA-1:cds;Parent=Msa0664020-mRNA-1 |
| chr4_4 | CDS | 2999528 | 2999752 | 2999528 | ID=Msa0664020-mRNA-1:cds;Parent=Msa0664020-mRNA-1 |
| chr4_4 | three_prime_UTR | 2999753 | 3000015 | 2999753 | ID=Msa0664020-mRNA-1:three_prime_utr;Parent=Msa0664020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
