Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663330 | XP_013454546.1 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 1.78e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663330 | sp|Q6K678|HDR1_ORYSJ | 62.121 | 198 | 59 | 3 | 15 | 199 | 9 | 203 | 3.36e-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663330 | A0A072UGK4 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 8.51e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0663330 | -0.802843 | 4.627532e-49 | -8.615850e-47 |
| Msa0006700 | Msa0663330 | 0.834486 | 2.915013e-56 | -8.615850e-47 |
| Msa0015100 | Msa0663330 | 0.834340 | 3.171679e-56 | -8.615850e-47 |
| Msa0021980 | Msa0663330 | 0.814858 | 1.243533e-51 | -8.615850e-47 |
| Msa0047420 | Msa0663330 | 0.822031 | 2.943876e-53 | -8.615850e-47 |
| Msa0049330 | Msa0663330 | 0.800358 | 1.496258e-48 | -8.615850e-47 |
| Msa0049770 | Msa0663330 | 0.822132 | 2.790078e-53 | -8.615850e-47 |
| Msa0093440 | Msa0663330 | 0.815362 | 9.610166e-52 | -8.615850e-47 |
| Msa0094940 | Msa0663330 | -0.827699 | 1.354497e-54 | -8.615850e-47 |
| Msa0610380 | Msa0663330 | -0.811251 | 7.684958e-51 | -8.615850e-47 |
| Msa0610890 | Msa0663330 | 0.801099 | 1.056376e-48 | -8.615850e-47 |
| Msa0620640 | Msa0663330 | 0.812500 | 4.109834e-51 | -8.615850e-47 |
| Msa0626230 | Msa0663330 | 0.804934 | 1.701930e-49 | -8.615850e-47 |
| Msa0635470 | Msa0663330 | 0.841029 | 6.087669e-58 | -8.615850e-47 |
| Msa0639030 | Msa0663330 | 0.808270 | 3.362733e-50 | -8.615850e-47 |
| Msa0640380 | Msa0663330 | 0.825224 | 5.268496e-54 | -8.615850e-47 |
| Msa0641020 | Msa0663330 | 0.816934 | 4.281092e-52 | -8.615850e-47 |
| Msa0650910 | Msa0663330 | -0.806700 | 7.243173e-50 | -8.615850e-47 |
| Msa0656270 | Msa0663330 | 0.815868 | 7.412949e-52 | -8.615850e-47 |
| Msa0656680 | Msa0663330 | 0.812802 | 3.528748e-51 | -8.615850e-47 |
| Msa0663330 | Msa0664020 | 0.988298 | 1.790532e-173 | -8.615850e-47 |
| Msa0663330 | Msa0678820 | 0.802695 | 4.965454e-49 | -8.615850e-47 |
| Msa0663330 | Msa0697600 | 0.805365 | 1.382463e-49 | -8.615850e-47 |
| Msa0663330 | Msa0700070 | 0.811817 | 5.792346e-51 | -8.615850e-47 |
| Msa0663330 | Msa0715720 | 0.834713 | 2.556846e-56 | -8.615850e-47 |
| Msa0663330 | Msa0718240 | 0.815395 | 9.449813e-52 | -8.615850e-47 |
| Msa0663330 | Msa0722930 | 0.866052 | 3.779869e-65 | -8.615850e-47 |
| Msa0663330 | Msa0723140 | 0.869163 | 3.804992e-66 | -8.615850e-47 |
| Msa0663330 | Msa0733670 | -0.844713 | 6.376273e-59 | -8.615850e-47 |
| Msa0663330 | Msa0774810 | -0.841224 | 5.409468e-58 | -8.615850e-47 |
| Msa0663330 | Msa0828570 | 0.803856 | 2.854986e-49 | -8.615850e-47 |
| Msa0663330 | Msa0843280 | 0.832709 | 8.099296e-56 | -8.615850e-47 |
| Msa0663330 | Msa0883410 | 0.801088 | 1.061701e-48 | -8.615850e-47 |
| Msa0663330 | Msa0883660 | 0.800247 | 1.575993e-48 | -8.615850e-47 |
| Msa0663330 | Msa0883670 | 0.821802 | 3.326124e-53 | -8.615850e-47 |
| Msa0663330 | Msa0919520 | 0.822371 | 2.454926e-53 | -8.615850e-47 |
| Msa0663330 | Msa0934820 | 0.822704 | 2.054682e-53 | -8.615850e-47 |
| Msa0663330 | Msa0951720 | 0.824572 | 7.504725e-54 | -8.615850e-47 |
| Msa0663330 | Msa0961420 | -0.811364 | 7.266334e-51 | -8.615850e-47 |
| Msa0663330 | Msa0964680 | 0.809681 | 1.677652e-50 | -8.615850e-47 |
| Msa0663330 | Msa0965520 | 0.808772 | 2.628456e-50 | -8.615850e-47 |
| Msa0663330 | Msa0984850 | 0.805739 | 1.154185e-49 | -8.615850e-47 |
| Msa0663330 | Msa1054410 | 0.806576 | 7.691073e-50 | -8.615850e-47 |
| Msa0663330 | Msa1080790 | 0.814291 | 1.660683e-51 | -8.615850e-47 |
| Msa0663330 | Msa1108780 | 0.822051 | 2.913240e-53 | -8.615850e-47 |
| Msa0663330 | Msa1118930 | 0.817259 | 3.617982e-52 | -8.615850e-47 |
| Msa0663330 | Msa1204980 | -0.813806 | 2.124528e-51 | -8.615850e-47 |
| Msa0663330 | Msa1205010 | -0.808147 | 3.572750e-50 | -8.615850e-47 |
| Msa0663330 | Msa1208180 | 0.805327 | 1.408239e-49 | -8.615850e-47 |
| Msa0663330 | Msa1208340 | 0.824757 | 6.789741e-54 | -8.615850e-47 |
| Msa0663330 | Msa1221200 | -0.845189 | 4.743247e-59 | -8.615850e-47 |
| Msa0663330 | Msa1237260 | 0.834691 | 2.589159e-56 | -8.615850e-47 |
| Msa0663330 | Msa1256540 | -0.807205 | 5.663792e-50 | -8.615850e-47 |
| Msa0663330 | Msa1258950 | 0.801267 | 9.762254e-49 | -8.615850e-47 |
| Msa0663330 | Msa1296960 | -0.804093 | 2.549073e-49 | -8.615850e-47 |
| Msa0663330 | Msa1312680 | 0.804840 | 1.780685e-49 | -8.615850e-47 |
| Msa0663330 | Msa1317710 | 0.818223 | 2.192967e-52 | -8.615850e-47 |
| Msa0663330 | Msa1335970 | -0.820786 | 5.707328e-53 | -8.615850e-47 |
| Msa0663330 | Msa1358870 | -0.840481 | 8.473108e-58 | -8.615850e-47 |
| Msa0663330 | Msa1365040 | -0.830609 | 2.666492e-55 | -8.615850e-47 |
| Msa0663330 | Msa1424510 | 0.811814 | 5.799374e-51 | -8.615850e-47 |
| Msa0663330 | Msa1438820 | 0.809230 | 2.096558e-50 | -8.615850e-47 |
| Msa0663330 | Msa1445250 | 0.818065 | 2.380262e-52 | -8.615850e-47 |
| Msa0663330 | Msa1454860 | 0.805731 | 1.158516e-49 | -8.615850e-47 |
| Msa0663330 | Msa1457670 | -0.831119 | 1.999208e-55 | -8.615850e-47 |
| Msa0663330 | Msa1460310 | -0.804688 | 1.915331e-49 | -8.615850e-47 |
| Msa0663330 | Msa1465890 | -0.807521 | 4.853814e-50 | -8.615850e-47 |
| Msa0146910 | Msa0663330 | -0.805843 | 1.097373e-49 | -8.615850e-47 |
| Msa0153440 | Msa0663330 | 0.805236 | 1.471397e-49 | -8.615850e-47 |
| Msa0181410 | Msa0663330 | 0.847703 | 9.779709e-60 | -8.615850e-47 |
| Msa0185640 | Msa0663330 | -0.807638 | 4.583718e-50 | -8.615850e-47 |
| Msa0213090 | Msa0663330 | 0.816712 | 4.801644e-52 | -8.615850e-47 |
| Msa0226620 | Msa0663330 | -0.821002 | 5.088515e-53 | -8.615850e-47 |
| Msa0379820 | Msa0663330 | 0.826249 | 3.008839e-54 | -8.615850e-47 |
| Msa0411000 | Msa0663330 | 0.842751 | 2.135315e-58 | -8.615850e-47 |
| Msa0419620 | Msa0663330 | -0.808283 | 3.342096e-50 | -8.615850e-47 |
| Msa0421920 | Msa0663330 | -0.801008 | 1.102443e-48 | -8.615850e-47 |
| Msa0427380 | Msa0663330 | -0.873972 | 9.709586e-68 | -8.615850e-47 |
| Msa0429170 | Msa0663330 | 0.809518 | 1.818377e-50 | -8.615850e-47 |
| Msa0455230 | Msa0663330 | 0.830368 | 3.055237e-55 | -8.615850e-47 |
| Msa0465680 | Msa0663330 | -0.806979 | 6.321640e-50 | -8.615850e-47 |
| Msa0467740 | Msa0663330 | -0.842234 | 2.928356e-58 | -8.615850e-47 |
| Msa0253370 | Msa0663330 | 0.827852 | 1.244613e-54 | -8.615850e-47 |
| Msa0260270 | Msa0663330 | -0.814891 | 1.222911e-51 | -8.615850e-47 |
| Msa0302990 | Msa0663330 | -0.804764 | 1.846998e-49 | -8.615850e-47 |
| Msa0330400 | Msa0663330 | 0.816726 | 4.767421e-52 | -8.615850e-47 |
| Msa0334170 | Msa0663330 | 0.814426 | 1.549834e-51 | -8.615850e-47 |
| Msa0342340 | Msa0663330 | -0.807600 | 4.669182e-50 | -8.615850e-47 |
| Msa0363460 | Msa0663330 | 0.830555 | 2.749444e-55 | -8.615850e-47 |
| Msa0514130 | Msa0663330 | -0.849805 | 2.554683e-60 | -8.615850e-47 |
| Msa0527900 | Msa0663330 | 0.906316 | 1.690898e-80 | -8.615850e-47 |
| Msa0543900 | Msa0663330 | 0.819793 | 9.636629e-53 | -8.615850e-47 |
| Msa0544930 | Msa0663330 | 0.809331 | 1.994903e-50 | -8.615850e-47 |
| Msa0549740 | Msa0663330 | 0.804335 | 2.270093e-49 | -8.615850e-47 |
| Msa0564490 | Msa0663330 | 0.831933 | 1.260468e-55 | -8.615850e-47 |
| Msa0564510 | Msa0663330 | 0.800703 | 1.272882e-48 | -8.615850e-47 |
| Msa0576600 | Msa0663330 | 0.811764 | 5.948251e-51 | -8.615850e-47 |
| Msa0586150 | Msa0663330 | 0.915095 | 8.839809e-85 | -8.615850e-47 |
| Msa0599770 | Msa0663330 | 0.808307 | 3.302968e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663330 | MtrunA17_Chr4g0001971 | 96.172 | 209 | 8 | 0 | 1 | 209 | 1 | 209 | 1.64e-146 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663330 | AT1G80940.1 | 66.497 | 197 | 52 | 4 | 2 | 190 | 14 | 204 | 6.44e-79 | 235 |
| Msa0663330 | AT1G80940.3 | 84.252 | 127 | 19 | 1 | 65 | 190 | 16 | 142 | 6.90e-70 | 210 |
| Msa0663330 | AT1G80940.2 | 60.690 | 145 | 43 | 4 | 2 | 138 | 14 | 152 | 2.32e-48 | 156 |
| Msa0663330 | AT1G80940.4 | 52.033 | 123 | 45 | 4 | 2 | 116 | 14 | 130 | 2.26e-30 | 110 |
Find 66 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCATCTCCCACTTCT+TGG | 0.189164 | 4_4:+2100744 | None:intergenic |
| TAACCTTTCTGTTCATTTCT+TGG | 0.189299 | 4_4:+2101243 | None:intergenic |
| CGGCCGTTGCTGTTCTTTAT+AGG | 0.207088 | 4_4:+2101398 | None:intergenic |
| TCATTATTTGTTGCATGTTT+TGG | 0.214378 | 4_4:-2103394 | Msa0663330:five_prime_UTR |
| TGCCGAAGTTTCTGAGCTTT+CGG | 0.303182 | 4_4:-2101453 | Msa0663330:CDS |
| TATCAGCATCTTTGTTTGTA+AGG | 0.306286 | 4_4:-2103505 | None:intergenic |
| CTGTTCTTTATAGGTTCTAA+TGG | 0.315483 | 4_4:+2101407 | None:intergenic |
| AGGAGTATCTTCCGGGTTGC+CGG | 0.334216 | 4_4:+2101499 | None:intergenic |
| GAGTCCTGCATTTCCACATT+AGG | 0.337528 | 4_4:+2101476 | None:intergenic |
| CATTAGGAGGAGTATCTTCC+GGG | 0.367822 | 4_4:+2101492 | None:intergenic |
| AAAATCTGAGGAGGTGAAAC+AGG | 0.371893 | 4_4:+2103310 | None:intergenic |
| TATAATATAATTCATCTTCA+AGG | 0.398042 | 4_4:+2100713 | None:intergenic |
| TTCATCTTCAAGGTTCATCT+TGG | 0.411081 | 4_4:+2100723 | None:intergenic |
| TATGGTCATGGATGATGCTT+TGG | 0.425253 | 4_4:-2103344 | Msa0663330:CDS |
| TATCCAAAGGGATGGCTGAT+TGG | 0.428780 | 4_4:-2101323 | Msa0663330:CDS |
| TGTAAGGTTGTTGAAAACTT+TGG | 0.430176 | 4_4:-2103489 | Msa0663330:five_prime_UTR |
| ATATAGTAGTAGTATCAATA+TGG | 0.432236 | 4_4:-2100611 | Msa0663330:three_prime_UTR |
| TTTCCAATCAGCCATCCCTT+TGG | 0.434651 | 4_4:+2101320 | None:intergenic |
| GGAGTATCTTCCGGGTTGCC+GGG | 0.439882 | 4_4:+2101500 | None:intergenic |
| TTGCAGGATAGAGAAATAGA+TGG | 0.443528 | 4_4:-2100938 | Msa0663330:intron |
| GTTACAAGAAACTGAGCAAA+TGG | 0.465931 | 4_4:-2100777 | Msa0663330:CDS |
| TATAGTAGTAGTATCAATAT+GGG | 0.468650 | 4_4:-2100610 | Msa0663330:three_prime_UTR |
| TCCTCCTAATGTGGAAATGC+AGG | 0.470382 | 4_4:-2101480 | Msa0663330:CDS |
| GGCCAAGAAGTGGGAGATGA+AGG | 0.479804 | 4_4:-2100746 | Msa0663330:CDS |
| TAGTTTGCAGACTCAAAATC+AGG | 0.486553 | 4_4:+2101344 | None:intergenic |
| AGCTAGCGGGAGGAATTTAG+AGG | 0.489631 | 4_4:-2101552 | Msa0663330:CDS |
| ACATTAGGAGGAGTATCTTC+CGG | 0.492696 | 4_4:+2101491 | None:intergenic |
| AGATGGACTAAACGAACAGC+TGG | 0.507521 | 4_4:-2100921 | Msa0663330:CDS |
| AGGAAGCAAAGACTCGGCAG+AGG | 0.524151 | 4_4:+2101370 | None:intergenic |
| TGAGCTTTCGGAGCGTCGAA+AGG | 0.531699 | 4_4:-2101441 | Msa0663330:CDS |
| TCCTGCATTTCCACATTAGG+AGG | 0.532301 | 4_4:+2101479 | None:intergenic |
| TGGAAATCTAGAAAGAGATC+AGG | 0.533990 | 4_4:-2103286 | Msa0663330:intron |
| GAGTCTGCAAACTATCCAAA+GGG | 0.537534 | 4_4:-2101335 | Msa0663330:CDS |
| CTAGATTTCCAGAAAATCTG+AGG | 0.541060 | 4_4:+2103298 | None:intergenic |
| ACTGAGCAAATGGCAGATGA+AGG | 0.541063 | 4_4:-2100767 | Msa0663330:CDS |
| TAAAACACCACCCGGCAACC+CGG | 0.548227 | 4_4:-2101510 | Msa0663330:CDS |
| GTCATGGATGATGCTTTGGA+TGG | 0.553546 | 4_4:-2103340 | Msa0663330:CDS |
| AACAGCTGGAGGAGGATTCG+CGG | 0.559765 | 4_4:-2100907 | Msa0663330:CDS |
| GGAAGATACTCCTCCTAATG+TGG | 0.567411 | 4_4:-2101489 | Msa0663330:CDS |
| TGAGTCTGCAAACTATCCAA+AGG | 0.573463 | 4_4:-2101336 | Msa0663330:CDS |
| AAGACTCGGCAGAGGGTCGT+CGG | 0.585384 | 4_4:+2101378 | None:intergenic |
| CTCCGAAAGCTCAGAAACTT+CGG | 0.590975 | 4_4:+2101451 | None:intergenic |
| AAGCACAAGCATGCACACAC+TGG | 0.591411 | 4_4:+2100687 | None:intergenic |
| TGTCCAAGAAATGAACAGAA+AGG | 0.592222 | 4_4:-2101246 | Msa0663330:intron |
| ATAGTAGTAGTATCAATATG+GGG | 0.595387 | 4_4:-2100609 | Msa0663330:three_prime_UTR |
| CTGCAAACTATCCAAAGGGA+TGG | 0.596246 | 4_4:-2101331 | Msa0663330:CDS |
| ACGTGTTCACCACAGCTAGC+GGG | 0.599138 | 4_4:-2101565 | Msa0663330:intron |
| GGCAGATGAAGGCCAAGAAG+TGG | 0.599174 | 4_4:-2100756 | Msa0663330:CDS |
| GCAGACTCAAAATCAGGTGG+AGG | 0.602642 | 4_4:+2101350 | None:intergenic |
| AGGTGGAGGAAGCAAAGACT+CGG | 0.620390 | 4_4:+2101364 | None:intergenic |
| ACTAAACGAACAGCTGGAGG+AGG | 0.624134 | 4_4:-2100915 | Msa0663330:CDS |
| GCAGATGAAGGCCAAGAAGT+GGG | 0.625863 | 4_4:-2100755 | Msa0663330:CDS |
| AGGTTCTAATGGTTCAAACA+AGG | 0.637581 | 4_4:+2101418 | None:intergenic |
| GCACTTGCAAGTGCAGCTTG+TGG | 0.640595 | 4_4:-2100876 | Msa0663330:CDS |
| GGAAGCAAAGACTCGGCAGA+GGG | 0.645207 | 4_4:+2101371 | None:intergenic |
| ATGTGGTCGAAAGCATGCGA+AGG | 0.652930 | 4_4:-2101274 | Msa0663330:CDS |
| GATACAGCTAAAACACCACC+CGG | 0.658820 | 4_4:-2101518 | Msa0663330:CDS |
| TGGACTAAACGAACAGCTGG+AGG | 0.659762 | 4_4:-2100918 | Msa0663330:CDS |
| GTATCTTCCGGGTTGCCGGG+TGG | 0.662272 | 4_4:+2101503 | None:intergenic |
| TTTGCAGACTCAAAATCAGG+TGG | 0.663167 | 4_4:+2101347 | None:intergenic |
| GAACCTATAAAGAACAGCAA+CGG | 0.668853 | 4_4:-2101401 | Msa0663330:CDS |
| TAGTAGTAGTATCAATATGG+GGG | 0.676157 | 4_4:-2100608 | Msa0663330:three_prime_UTR |
| ATATGCACTCTAATAACACA+CGG | 0.682043 | 4_4:+2100630 | None:intergenic |
| GATTTCCAGAAAATCTGAGG+AGG | 0.685426 | 4_4:+2103301 | None:intergenic |
| AAAGCTTGTCAATGTTGATG+TGG | 0.687893 | 4_4:-2101291 | Msa0663330:CDS |
| TGTTCACCACAGCTAGCGGG+AGG | 0.700309 | 4_4:-2101562 | Msa0663330:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACTACAAATAATATA+TGG | + | chr4_4:2100896-2100915 | None:intergenic | 10.0% |
| !! | ATATATTATTTGTAGTATTT+AGG | - | chr4_4:2100895-2100914 | Msa0663330:CDS | 10.0% |
| !!! | TTTTTGTATGATAAAAATTT+TGG | + | chr4_4:2101239-2101258 | None:intergenic | 10.0% |
| !!! | CAAAAATAACAATTTTATTA+AGG | + | chr4_4:2101585-2101604 | None:intergenic | 10.0% |
| !!! | CTTTATTATTTTATCTTGTA+TGG | - | chr4_4:2100841-2100860 | Msa0663330:CDS | 15.0% |
| !!! | ATACGTTAGTATAATATTTT+TGG | - | chr4_4:2101212-2101231 | Msa0663330:intron | 15.0% |
| !! | TTACATGAAAATAATAGTAT+TGG | + | chr4_4:2101368-2101387 | None:intergenic | 15.0% |
| !!! | AATATAAAGTATTGTTTTGT+TGG | + | chr4_4:2101537-2101556 | None:intergenic | 15.0% |
| !! | AAAATTGAAACATTCATATA+TGG | + | chr4_4:2101836-2101855 | None:intergenic | 15.0% |
| !! | GATGTAAAATTGAATTATAA+TGG | + | chr4_4:2101892-2101911 | None:intergenic | 15.0% |
| !! | TATAATATAATTCATCTTCA+AGG | + | chr4_4:2103253-2103272 | None:intergenic | 15.0% |
| !! | TACTACAAATAATATATGGT+GGG | + | chr4_4:2100892-2100911 | None:intergenic | 20.0% |
| !! | ATACTACAAATAATATATGG+TGG | + | chr4_4:2100893-2100912 | None:intergenic | 20.0% |
| !!! | ATTTGTATGATTTGAAATTG+AGG | - | chr4_4:2101013-2101032 | Msa0663330:intron | 20.0% |
| !! | TATTATACTAACGTATTGTT+TGG | + | chr4_4:2101208-2101227 | None:intergenic | 20.0% |
| !!! | AATTGTTATTTTTGTGAACA+TGG | - | chr4_4:2101591-2101610 | Msa0663330:intron | 20.0% |
| !!! | ATTTTACATCTTCTTTTTCA+AGG | - | chr4_4:2101902-2101921 | Msa0663330:intron | 20.0% |
| !!! | TTTTTCAAGGAAACTTAAAT+GGG | - | chr4_4:2101915-2101934 | Msa0663330:intron | 20.0% |
| !! | TTTACTATCTCTAAATAAGA+AGG | - | chr4_4:2102092-2102111 | Msa0663330:intron | 20.0% |
| !! | TGGTTACACTTAAATTATTA+CGG | - | chr4_4:2102203-2102222 | Msa0663330:intron | 20.0% |
| !! | TAAATGAATTGCAAAAAGAA+TGG | - | chr4_4:2102373-2102392 | Msa0663330:intron | 20.0% |
| !!! | TGAATTTAAGGTTGTTAAAA+AGG | + | chr4_4:2102758-2102777 | None:intergenic | 20.0% |
| !! | ATATAGTAGTAGTATCAATA+TGG | - | chr4_4:2103352-2103371 | Msa0663330:exon | 20.0% |
| !! | TATAGTAGTAGTATCAATAT+GGG | - | chr4_4:2103353-2103372 | Msa0663330:exon | 20.0% |
| !!! | TCATTATTTGTTGCATGTTT+TGG | - | chr4_4:2100569-2100588 | Msa0663330:three_prime_UTR | 25.0% |
| ! | TAAAAGTTGAAGAACAGAAA+AGG | + | chr4_4:2100705-2100724 | None:intergenic | 25.0% |
| !!! | TAACATTTTGTTTTGTAAGC+TGG | - | chr4_4:2101053-2101072 | Msa0663330:intron | 25.0% |
| !!! | GCTTTATTTGTTATTATGGT+TGG | - | chr4_4:2101178-2101197 | Msa0663330:intron | 25.0% |
| !! | ATTGAACATGTTTTCAATCT+AGG | + | chr4_4:2101320-2101339 | None:intergenic | 25.0% |
| ! | AATTTAAGCACGATTAACTT+CGG | + | chr4_4:2101454-2101473 | None:intergenic | 25.0% |
| ! | ATTGAATTTCTTGATGTACA+AGG | - | chr4_4:2101627-2101646 | Msa0663330:intron | 25.0% |
| ! | TTGAATTTCTTGATGTACAA+GGG | - | chr4_4:2101628-2101647 | Msa0663330:intron | 25.0% |
| ! | ATATGGTAGATGAACAATAA+AGG | + | chr4_4:2101819-2101838 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAGGAAACTTAAA+TGG | - | chr4_4:2101914-2101933 | Msa0663330:intron | 25.0% |
| !!! | ATTTTCCTTCTTATTTTCTG+CGG | - | chr4_4:2102042-2102061 | Msa0663330:intron | 25.0% |
| !!! | CATTCTTAGCTTTGAATTTA+AGG | + | chr4_4:2102770-2102789 | None:intergenic | 25.0% |
| ! | CAAGTGGATAAAAAATAAAC+TGG | + | chr4_4:2102884-2102903 | None:intergenic | 25.0% |
| ! | ATAGTAGTAGTATCAATATG+GGG | - | chr4_4:2103354-2103373 | Msa0663330:exon | 25.0% |
| TGTAAGGTTGTTGAAAACTT+TGG | - | chr4_4:2100474-2100493 | Msa0663330:three_prime_UTR | 30.0% | |
| TAAAACCAAAAAGACTTGCA+AGG | - | chr4_4:2100522-2100541 | Msa0663330:three_prime_UTR | 30.0% | |
| ! | ATTTTCCTTGCAAGTCTTTT+TGG | + | chr4_4:2100530-2100549 | None:intergenic | 30.0% |
| !!! | TGCATGTTTTGGAATATTTC+TGG | - | chr4_4:2100580-2100599 | Msa0663330:three_prime_UTR | 30.0% |
| !!! | GGAAAATTTTGAAGCAACTA+TGG | - | chr4_4:2100601-2100620 | Msa0663330:three_prime_UTR | 30.0% |
| !! | CGCTGCTTTATTTGTTATTA+TGG | - | chr4_4:2101174-2101193 | Msa0663330:intron | 30.0% |
| ! | ATAGTATTGGACTATTGTGT+TGG | + | chr4_4:2101355-2101374 | None:intergenic | 30.0% |
| ! | TGTTGGTTACTTTCATAAAG+AGG | + | chr4_4:2101520-2101539 | None:intergenic | 30.0% |
| TGAATTTCTTGATGTACAAG+GGG | - | chr4_4:2101629-2101648 | Msa0663330:intron | 30.0% | |
| ! | TCTTGTTATGTGTTGAGTTA+TGG | - | chr4_4:2101693-2101712 | Msa0663330:intron | 30.0% |
| ! | CTTGTTATGTGTTGAGTTAT+GGG | - | chr4_4:2101694-2101713 | Msa0663330:intron | 30.0% |
| ATTAAGAAGTCACATATGCA+AGG | + | chr4_4:2101781-2101800 | None:intergenic | 30.0% | |
| AAATAAGAAGGAAGAAAACC+TGG | - | chr4_4:2102104-2102123 | Msa0663330:intron | 30.0% | |
| ! | CTGTTCTTTATAGGTTCTAA+TGG | + | chr4_4:2102559-2102578 | None:intergenic | 30.0% |
| TAACCTTTCTGTTCATTTCT+TGG | + | chr4_4:2102723-2102742 | None:intergenic | 30.0% | |
| AGGTTGTTAAAAAGGAAACT+TGG | + | chr4_4:2102750-2102769 | None:intergenic | 30.0% | |
| GTGGATAAAAAATAAACTGG+TGG | + | chr4_4:2102881-2102900 | None:intergenic | 30.0% | |
| !!! | CAACACTTTTTCTCGTATAT+TGG | + | chr4_4:2102933-2102952 | None:intergenic | 30.0% |
| !! | AAAAGTGTTGAAAAGAGGTT+TGG | - | chr4_4:2102943-2102962 | Msa0663330:intron | 30.0% |
| ATATGCACTCTAATAACACA+CGG | + | chr4_4:2103336-2103355 | None:intergenic | 30.0% | |
| TAGTAGTAGTATCAATATGG+GGG | - | chr4_4:2103355-2103374 | Msa0663330:exon | 30.0% | |
| !!! | TTTTGAAGCAACTATGGTCA+TGG | - | chr4_4:2100607-2100626 | Msa0663330:three_prime_UTR | 35.0% |
| CTAGATTTCCAGAAAATCTG+AGG | + | chr4_4:2100668-2100687 | None:intergenic | 35.0% | |
| TGGAAATCTAGAAAGAGATC+AGG | - | chr4_4:2100677-2100696 | Msa0663330:three_prime_UTR | 35.0% | |
| TTATTCAGTGTAACCAAGAG+AGG | - | chr4_4:2101102-2101121 | Msa0663330:intron | 35.0% | |
| GTACAATAGTGGTTAACAGT+TGG | - | chr4_4:2101135-2101154 | Msa0663330:intron | 35.0% | |
| CAACACAAAAACTTTCTAGG+TGG | + | chr4_4:2101478-2101497 | None:intergenic | 35.0% | |
| GTGCAACACAAAAACTTTCT+AGG | + | chr4_4:2101481-2101500 | None:intergenic | 35.0% | |
| GAATTTCTTGATGTACAAGG+GGG | - | chr4_4:2101630-2101649 | Msa0663330:intron | 35.0% | |
| AATGGGAGATGAATCACTAA+AGG | - | chr4_4:2101932-2101951 | Msa0663330:intron | 35.0% | |
| TATCACCGCAGAAAATAAGA+AGG | + | chr4_4:2102050-2102069 | None:intergenic | 35.0% | |
| GCACAAACAATTCAGATTGA+AGG | - | chr4_4:2102143-2102162 | Msa0663330:intron | 35.0% | |
| ! | AGGTTCTAATGGTTCAAACA+AGG | + | chr4_4:2102548-2102567 | None:intergenic | 35.0% |
| GAACCTATAAAGAACAGCAA+CGG | - | chr4_4:2102562-2102581 | Msa0663330:intron | 35.0% | |
| ! | TAGTTTGCAGACTCAAAATC+AGG | + | chr4_4:2102622-2102641 | None:intergenic | 35.0% |
| AAAGCTTGTCAATGTTGATG+TGG | - | chr4_4:2102672-2102691 | Msa0663330:intron | 35.0% | |
| TGTCCAAGAAATGAACAGAA+AGG | - | chr4_4:2102717-2102736 | Msa0663330:intron | 35.0% | |
| !! | CGAGAAAAAGTGTTGAAAAG+AGG | - | chr4_4:2102938-2102957 | Msa0663330:intron | 35.0% |
| TTGCAGGATAGAGAAATAGA+TGG | - | chr4_4:2103025-2103044 | Msa0663330:intron | 35.0% | |
| GTTACAAGAAACTGAGCAAA+TGG | - | chr4_4:2103186-2103205 | Msa0663330:intron | 35.0% | |
| TTCATCTTCAAGGTTCATCT+TGG | + | chr4_4:2103243-2103262 | None:intergenic | 35.0% | |
| !! | CTTGCTTTTCTCAAAAACAG+AGG | - | chr4_4:2103395-2103414 | Msa0663330:five_prime_UTR | 35.0% |
| TATGGTCATGGATGATGCTT+TGG | - | chr4_4:2100619-2100638 | Msa0663330:three_prime_UTR | 40.0% | |
| AAAATCTGAGGAGGTGAAAC+AGG | + | chr4_4:2100656-2100675 | None:intergenic | 40.0% | |
| ! | TTTCACCTCCTCAGATTTTC+TGG | - | chr4_4:2100657-2100676 | Msa0663330:three_prime_UTR | 40.0% |
| GATTTCCAGAAAATCTGAGG+AGG | + | chr4_4:2100665-2100684 | None:intergenic | 40.0% | |
| ! | AAGAGGTGCAACACATAAAG+CGG | + | chr4_4:2101503-2101522 | None:intergenic | 40.0% |
| TAAAAACCCATGTGGCTGTT+TGG | - | chr4_4:2101655-2101674 | Msa0663330:intron | 40.0% | |
| CATATGCAAGGAAACCAACA+TGG | + | chr4_4:2101769-2101788 | None:intergenic | 40.0% | |
| !! | GTGTGTTTGCTATCCAACAT+CGG | - | chr4_4:2102165-2102184 | Msa0663330:intron | 40.0% |
| ATGCTTCATAGATAGATCCC+TGG | - | chr4_4:2102261-2102280 | Msa0663330:intron | 40.0% | |
| !!! | CTCTTTTTTGAACCCTACCA+TGG | + | chr4_4:2102287-2102306 | None:intergenic | 40.0% |
| !! | ACATTAGGAGGAGTATCTTC+CGG | + | chr4_4:2102475-2102494 | None:intergenic | 40.0% |
| TTTGCAGACTCAAAATCAGG+TGG | + | chr4_4:2102619-2102638 | None:intergenic | 40.0% | |
| TGAGTCTGCAAACTATCCAA+AGG | - | chr4_4:2102627-2102646 | Msa0663330:intron | 40.0% | |
| GAGTCTGCAAACTATCCAAA+GGG | - | chr4_4:2102628-2102647 | Msa0663330:intron | 40.0% | |
| AGACTGTTAGAGTCTGCAAT+TGG | + | chr4_4:2102817-2102836 | None:intergenic | 40.0% | |
| CGAGTCTTACTAAAGTCAAG+TGG | + | chr4_4:2102900-2102919 | None:intergenic | 40.0% | |
| ! | TATTGCTAGCATTTTCCGCA+TGG | - | chr4_4:2102972-2102991 | Msa0663330:intron | 40.0% |
| ! | CATTTGACGACTTTTGTTGC+AGG | - | chr4_4:2103009-2103028 | Msa0663330:intron | 40.0% |
| ! | GTCATGGATGATGCTTTGGA+TGG | - | chr4_4:2100623-2100642 | Msa0663330:three_prime_UTR | 45.0% |
| ! | GAGAGAGAAGCGTACAATAG+TGG | - | chr4_4:2101124-2101143 | Msa0663330:intron | 45.0% |
| AGGGGGAATAAAAACCCATG+TGG | - | chr4_4:2101647-2101666 | Msa0663330:intron | 45.0% | |
| !! | TAAAGAGGGTTGGTTGAAGG+TGG | + | chr4_4:2101737-2101756 | None:intergenic | 45.0% |
| !! | CACTAAAGAGGGTTGGTTGA+AGG | + | chr4_4:2101740-2101759 | None:intergenic | 45.0% |
| CATGGAGGCTACACTAAAGA+GGG | + | chr4_4:2101751-2101770 | None:intergenic | 45.0% | |
| ACATGGAGGCTACACTAAAG+AGG | + | chr4_4:2101752-2101771 | None:intergenic | 45.0% | |
| CTTTAGTGTAGCCTCCATGT+TGG | - | chr4_4:2101752-2101771 | Msa0663330:intron | 45.0% | |
| ATGCAAGGAAACCAACATGG+AGG | + | chr4_4:2101766-2101785 | None:intergenic | 45.0% | |
| GCTACATAGAGCTCTATACC+AGG | + | chr4_4:2102125-2102144 | None:intergenic | 45.0% | |
| GATACAGCTAAAACACCACC+CGG | - | chr4_4:2102445-2102464 | Msa0663330:intron | 45.0% | |
| !! | CATTAGGAGGAGTATCTTCC+GGG | + | chr4_4:2102474-2102493 | None:intergenic | 45.0% |
| GGAAGATACTCCTCCTAATG+TGG | - | chr4_4:2102474-2102493 | Msa0663330:intron | 45.0% | |
| TCCTCCTAATGTGGAAATGC+AGG | - | chr4_4:2102483-2102502 | Msa0663330:intron | 45.0% | |
| TCCTGCATTTCCACATTAGG+AGG | + | chr4_4:2102487-2102506 | None:intergenic | 45.0% | |
| GAGTCCTGCATTTCCACATT+AGG | + | chr4_4:2102490-2102509 | None:intergenic | 45.0% | |
| TGCCGAAGTTTCTGAGCTTT+CGG | - | chr4_4:2102510-2102529 | Msa0663330:intron | 45.0% | |
| CTCCGAAAGCTCAGAAACTT+CGG | + | chr4_4:2102515-2102534 | None:intergenic | 45.0% | |
| CTGCAAACTATCCAAAGGGA+TGG | - | chr4_4:2102632-2102651 | Msa0663330:intron | 45.0% | |
| TATCCAAAGGGATGGCTGAT+TGG | - | chr4_4:2102640-2102659 | Msa0663330:intron | 45.0% | |
| TTTCCAATCAGCCATCCCTT+TGG | + | chr4_4:2102646-2102665 | None:intergenic | 45.0% | |
| ! | GTCGTCAAATGCATTAGCCT+CGG | + | chr4_4:2103000-2103019 | None:intergenic | 45.0% |
| !! | AGATGGACTAAACGAACAGC+TGG | - | chr4_4:2103042-2103061 | Msa0663330:intron | 45.0% |
| ACTGAGCAAATGGCAGATGA+AGG | - | chr4_4:2103196-2103215 | Msa0663330:intron | 45.0% | |
| TACGCTTCTCTCTCCTCTCT+TGG | + | chr4_4:2101118-2101137 | None:intergenic | 50.0% | |
| AACCCATGTGGCTGTTTGGA+TGG | - | chr4_4:2101659-2101678 | Msa0663330:intron | 50.0% | |
| CACCATCCAAACAGCCACAT+GGG | + | chr4_4:2101664-2101683 | None:intergenic | 50.0% | |
| ACACCATCCAAACAGCCACA+TGG | + | chr4_4:2101665-2101684 | None:intergenic | 50.0% | |
| AGTTATGGGACAGCTAACCC+TGG | - | chr4_4:2101708-2101727 | Msa0663330:intron | 50.0% | |
| GAGGCTACACTAAAGAGGGT+TGG | + | chr4_4:2101747-2101766 | None:intergenic | 50.0% | |
| ATCGGCACGACACGATACAT+TGG | - | chr4_4:2102183-2102202 | Msa0663330:intron | 50.0% | |
| ACTGACACGACACTGACACA+TGG | + | chr4_4:2102232-2102251 | None:intergenic | 50.0% | |
| CATAGATAGATCCCTGGCCA+TGG | - | chr4_4:2102267-2102286 | Msa0663330:intron | 50.0% | |
| ATAGATCCCTGGCCATGGTA+GGG | - | chr4_4:2102272-2102291 | Msa0663330:intron | 50.0% | |
| TTTGAACCCTACCATGGCCA+GGG | + | chr4_4:2102281-2102300 | None:intergenic | 50.0% | |
| ! | TTTTGAACCCTACCATGGCC+AGG | + | chr4_4:2102282-2102301 | None:intergenic | 50.0% |
| AACGTGTTCACCACAGCTAG+CGG | - | chr4_4:2102397-2102416 | Msa0663330:intron | 50.0% | |
| TAAATTCCTCCCGCTAGCTG+TGG | + | chr4_4:2102410-2102429 | None:intergenic | 50.0% | |
| AGCTAGCGGGAGGAATTTAG+AGG | - | chr4_4:2102411-2102430 | Msa0663330:intron | 50.0% | |
| ! | CGGCCGTTGCTGTTCTTTAT+AGG | + | chr4_4:2102568-2102587 | None:intergenic | 50.0% |
| AGGTGGAGGAAGCAAAGACT+CGG | + | chr4_4:2102602-2102621 | None:intergenic | 50.0% | |
| GCAGACTCAAAATCAGGTGG+AGG | + | chr4_4:2102616-2102635 | None:intergenic | 50.0% | |
| ! | ATGTGGTCGAAAGCATGCGA+AGG | - | chr4_4:2102689-2102708 | Msa0663330:intron | 50.0% |
| TGGACTAAACGAACAGCTGG+AGG | - | chr4_4:2103045-2103064 | Msa0663330:intron | 50.0% | |
| ACTAAACGAACAGCTGGAGG+AGG | - | chr4_4:2103048-2103067 | Msa0663330:intron | 50.0% | |
| GCAGATGAAGGCCAAGAAGT+GGG | - | chr4_4:2103208-2103227 | Msa0663330:intron | 50.0% | |
| AAGCACAAGCATGCACACAC+TGG | + | chr4_4:2103279-2103298 | None:intergenic | 50.0% | |
| TTGGTTGAAGGTGGAGGCCA+GGG | + | chr4_4:2101728-2101747 | None:intergenic | 55.0% | |
| !! | AGAGGGTTGGTTGAAGGTGG+AGG | + | chr4_4:2101734-2101753 | None:intergenic | 55.0% |
| ! | GTATCGTGTCGTGCCGATGT+TGG | + | chr4_4:2102181-2102200 | None:intergenic | 55.0% |
| GATAGATCCCTGGCCATGGT+AGG | - | chr4_4:2102271-2102290 | Msa0663330:intron | 55.0% | |
| ACGTGTTCACCACAGCTAGC+GGG | - | chr4_4:2102398-2102417 | Msa0663330:intron | 55.0% | |
| TAAAACACCACCCGGCAACC+CGG | - | chr4_4:2102453-2102472 | Msa0663330:intron | 55.0% | |
| !! | AGGAGTATCTTCCGGGTTGC+CGG | + | chr4_4:2102467-2102486 | None:intergenic | 55.0% |
| !! | TGAGCTTTCGGAGCGTCGAA+AGG | - | chr4_4:2102522-2102541 | Msa0663330:intron | 55.0% |
| GGAAGCAAAGACTCGGCAGA+GGG | + | chr4_4:2102595-2102614 | None:intergenic | 55.0% | |
| AGGAAGCAAAGACTCGGCAG+AGG | + | chr4_4:2102596-2102615 | None:intergenic | 55.0% | |
| ! | GCATTTTCCGCATGGAACCG+AGG | - | chr4_4:2102980-2102999 | Msa0663330:intron | 55.0% |
| ! | GCATTAGCCTCGGTTCCATG+CGG | + | chr4_4:2102990-2103009 | None:intergenic | 55.0% |
| AACAGCTGGAGGAGGATTCG+CGG | - | chr4_4:2103056-2103075 | Msa0663330:intron | 55.0% | |
| GCACTTGCAAGTGCAGCTTG+TGG | - | chr4_4:2103087-2103106 | Msa0663330:intron | 55.0% | |
| GGCAGATGAAGGCCAAGAAG+TGG | - | chr4_4:2103207-2103226 | Msa0663330:intron | 55.0% | |
| GGCCAAGAAGTGGGAGATGA+AGG | - | chr4_4:2103217-2103236 | Msa0663330:intron | 55.0% | |
| GGCCTTCATCTCCCACTTCT+TGG | + | chr4_4:2103222-2103241 | None:intergenic | 55.0% | |
| GTTGGTTGAAGGTGGAGGCC+AGG | + | chr4_4:2101729-2101748 | None:intergenic | 60.0% | |
| TGTTCACCACAGCTAGCGGG+AGG | - | chr4_4:2102401-2102420 | Msa0663330:intron | 60.0% | |
| ! | GGAGTATCTTCCGGGTTGCC+GGG | + | chr4_4:2102466-2102485 | None:intergenic | 60.0% |
| AAGACTCGGCAGAGGGTCGT+CGG | + | chr4_4:2102588-2102607 | None:intergenic | 60.0% | |
| GTATCTTCCGGGTTGCCGGG+TGG | + | chr4_4:2102463-2102482 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2100467 | 2103518 | 2100467 | ID=Msa0663330;Name=Msa0663330 |
| chr4_4 | mRNA | 2100467 | 2103518 | 2100467 | ID=Msa0663330-mRNA-1;Parent=Msa0663330;Name=Msa0663330-mRNA-1;_AED=0.31;_eAED=0.31;_QI=153|1|1|1|1|1|3|263|209 |
| chr4_4 | exon | 2100467 | 2100954 | 2100467 | ID=Msa0663330-mRNA-1:exon:577;Parent=Msa0663330-mRNA-1 |
| chr4_4 | exon | 2101247 | 2101572 | 2101247 | ID=Msa0663330-mRNA-1:exon:576;Parent=Msa0663330-mRNA-1 |
| chr4_4 | exon | 2103287 | 2103518 | 2103287 | ID=Msa0663330-mRNA-1:exon:575;Parent=Msa0663330-mRNA-1 |
| chr4_4 | five_prime_UTR | 2103366 | 2103518 | 2103366 | ID=Msa0663330-mRNA-1:five_prime_utr;Parent=Msa0663330-mRNA-1 |
| chr4_4 | CDS | 2103287 | 2103365 | 2103287 | ID=Msa0663330-mRNA-1:cds;Parent=Msa0663330-mRNA-1 |
| chr4_4 | CDS | 2101247 | 2101572 | 2101247 | ID=Msa0663330-mRNA-1:cds;Parent=Msa0663330-mRNA-1 |
| chr4_4 | CDS | 2100730 | 2100954 | 2100730 | ID=Msa0663330-mRNA-1:cds;Parent=Msa0663330-mRNA-1 |
| chr4_4 | three_prime_UTR | 2100467 | 2100729 | 2100467 | ID=Msa0663330-mRNA-1:three_prime_utr;Parent=Msa0663330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
