Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934820 | sp|B0G107|SAMH1_DICDI | 36.681 | 458 | 240 | 8 | 23 | 479 | 80 | 488 | 4.99e-94 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934820 | A0A072U697 | 90.711 | 506 | 10 | 1 | 1 | 506 | 1 | 469 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047420 | Msa0934820 | 0.986773 | 6.374145e-168 | -8.615850e-47 |
| Msa0077760 | Msa0934820 | 0.800949 | 1.133579e-48 | -8.615850e-47 |
| Msa0094940 | Msa0934820 | -0.809268 | 2.058075e-50 | -8.615850e-47 |
| Msa0640380 | Msa0934820 | 0.827640 | 1.399263e-54 | -8.615850e-47 |
| Msa0663330 | Msa0934820 | 0.822704 | 2.054682e-53 | -8.615850e-47 |
| Msa0664020 | Msa0934820 | 0.827044 | 1.944072e-54 | -8.615850e-47 |
| Msa0678820 | Msa0934820 | 0.814996 | 1.158910e-51 | -8.615850e-47 |
| Msa0722930 | Msa0934820 | 0.816097 | 6.592664e-52 | -8.615850e-47 |
| Msa0723140 | Msa0934820 | 0.807307 | 5.388794e-50 | -8.615850e-47 |
| Msa0723210 | Msa0934820 | 0.806986 | 6.302278e-50 | -8.615850e-47 |
| Msa0226620 | Msa0934820 | -0.806615 | 7.546509e-50 | -8.615850e-47 |
| Msa0260270 | Msa0934820 | -0.803857 | 2.852921e-49 | -8.615850e-47 |
| Msa0543900 | Msa0934820 | 0.814748 | 1.315487e-51 | -8.615850e-47 |
| Msa0564510 | Msa0934820 | 0.803374 | 3.594776e-49 | -8.615850e-47 |
| Msa0599770 | Msa0934820 | 0.810776 | 9.744026e-51 | -8.615850e-47 |
| Msa0934820 | Msa0991670 | 0.800048 | 1.730198e-48 | -8.615850e-47 |
| Msa0934820 | Msa1116130 | -0.808030 | 3.783922e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934820 | MtrunA17_Chr6g0450851 | 90.711 | 506 | 10 | 1 | 1 | 506 | 1 | 469 | 0.0 | 936 |
| Msa0934820 | MtrunA17_Chr5g0413651 | 64.386 | 497 | 130 | 4 | 6 | 502 | 140 | 589 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934820 | AT5G40270.1 | 66.339 | 508 | 129 | 2 | 1 | 503 | 1 | 471 | 0.0 | 716 |
| Msa0934820 | AT5G40290.1 | 63.895 | 493 | 131 | 3 | 1 | 493 | 1 | 446 | 0.0 | 653 |
| Msa0934820 | AT5G40270.2 | 65.127 | 433 | 109 | 2 | 1 | 428 | 1 | 396 | 0.0 | 594 |
Find 97 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATTCATACCTTTACTTT+TGG | 0.232143 | 6_3:+4850139 | None:intergenic |
| ACAGCAACAGCAACAGCAAT+GGG | 0.246435 | 6_3:-4854657 | Msa0934820:exon |
| TACCCTAGGTAGAGCAAATT+TGG | 0.248078 | 6_3:+4850814 | None:intergenic |
| TAACGGCGTTTCTTCTTATC+TGG | 0.262952 | 6_3:+4848597 | None:intergenic |
| GACTGTCGAGCTTGTGGTCT+GGG | 0.290979 | 6_3:-4850500 | Msa0934820:CDS |
| ACTTCTTCTATACTATAATA+AGG | 0.292164 | 6_3:+4848459 | None:intergenic |
| CTTGGAGTGTATTGGATTGC+TGG | 0.293833 | 6_3:-4851924 | Msa0934820:CDS |
| CTATTATCCTCATAGGTTAA+TGG | 0.298646 | 6_3:-4850360 | Msa0934820:CDS |
| TTAAATTCTATTATCCTCAT+AGG | 0.329767 | 6_3:-4850367 | Msa0934820:CDS |
| TATATGAAAACTGTCTCTTT+TGG | 0.336127 | 6_3:-4848538 | Msa0934820:three_prime_UTR |
| TGCTGTTCCAAAGGATATAA+TGG | 0.344410 | 6_3:-4849613 | Msa0934820:CDS |
| TTAACTTTACTGACCAGTTC+TGG | 0.345377 | 6_3:+4848770 | None:intergenic |
| CACTTGGCAGGAAATGATAT+TGG | 0.346945 | 6_3:-4850843 | Msa0934820:intron |
| AAATTGTCCATTATATCCTT+TGG | 0.347909 | 6_3:+4849606 | None:intergenic |
| TGAACAAATGTCGGTCAAAA+TGG | 0.351315 | 6_3:-4851360 | Msa0934820:CDS |
| TCCAAGAGAATGCTCAAATC+TGG | 0.360135 | 6_3:+4851941 | None:intergenic |
| TCTCTAGCTTCCTTCAGTTC+TGG | 0.362099 | 6_3:+4849789 | None:intergenic |
| AGCATTCTCTTGGAGTGTAT+TGG | 0.362528 | 6_3:-4851932 | Msa0934820:CDS |
| AAATGGTTGATTATATAGTT+GGG | 0.364892 | 6_3:-4851343 | Msa0934820:CDS |
| TGACTGTCGAGCTTGTGGTC+TGG | 0.371354 | 6_3:-4850501 | Msa0934820:CDS |
| AAAATGGTTGATTATATAGT+TGG | 0.373584 | 6_3:-4851344 | Msa0934820:CDS |
| TTCAAGATCCTGGTGAATAC+TGG | 0.381538 | 6_3:-4849955 | Msa0934820:CDS |
| TCGAAGGCGGGATCTCTATC+AGG | 0.384744 | 6_3:-4849751 | Msa0934820:intron |
| TTTCCAGGCAATGGATCTAA+TGG | 0.390662 | 6_3:-4850029 | Msa0934820:intron |
| CACGTTCATGATAACGTTCA+TGG | 0.394273 | 6_3:-4854570 | Msa0934820:CDS |
| AAGTAATAGATTCATTGATA+TGG | 0.394526 | 6_3:+4848324 | None:intergenic |
| TCCAGATTTGAGCATTCTCT+TGG | 0.396374 | 6_3:-4851942 | Msa0934820:CDS |
| AATGGAGACCATGCGGGTCT+TGG | 0.412433 | 6_3:-4850342 | Msa0934820:CDS |
| TTGTATGATATTGTTGCAAA+TGG | 0.413163 | 6_3:-4850642 | Msa0934820:CDS |
| ATTCAATCCGTGAAACTTGC+TGG | 0.415551 | 6_3:-4851743 | Msa0934820:intron |
| AAGTGGCTTATGCGCTCATC+AGG | 0.425422 | 6_3:+4848842 | None:intergenic |
| TGTGAGGGTCAATATCAATA+TGG | 0.429940 | 6_3:+4851315 | None:intergenic |
| CTTGTCAAGATATGATAGTA+AGG | 0.433285 | 6_3:-4848808 | Msa0934820:CDS |
| ATTGTTGCAAATGGACGAAA+TGG | 0.434367 | 6_3:-4850633 | Msa0934820:CDS |
| CTGAGAATCGCTGATAACTC+TGG | 0.442575 | 6_3:+4851575 | None:intergenic |
| TTCACACACTTGGTGTATCC+AGG | 0.452183 | 6_3:-4851975 | Msa0934820:CDS |
| AACAGCAACAGCAACAGCAA+TGG | 0.455036 | 6_3:-4854658 | Msa0934820:exon |
| TCTTCTAGCATTCAAGATCC+TGG | 0.456750 | 6_3:-4849965 | Msa0934820:CDS |
| TATACTTGTAAGTTATTGCT+AGG | 0.456800 | 6_3:+4850426 | None:intergenic |
| ATCTTACAGGGCATGGAGCT+TGG | 0.457393 | 6_3:-4851782 | Msa0934820:intron |
| CGTTCAAACAAGTGACTGAA+TGG | 0.461182 | 6_3:+4851609 | None:intergenic |
| AGCTTCCTTCAGTTCTGGCA+AGG | 0.465740 | 6_3:+4849794 | None:intergenic |
| ATTTAGAGCTCAAGTGAGAA+AGG | 0.466824 | 6_3:-4850669 | Msa0934820:intron |
| GATTCTGCGCATTCGAAGGC+GGG | 0.475108 | 6_3:-4849763 | Msa0934820:CDS |
| TTATATACCAGCAAGTTTCA+CGG | 0.480628 | 6_3:+4851736 | None:intergenic |
| TGTTTCAGGTTTCACACACT+TGG | 0.481088 | 6_3:-4851985 | Msa0934820:intron |
| GTCAAAATCGATTTGACTCG+TGG | 0.496079 | 6_3:-4849393 | Msa0934820:CDS |
| TTCTCCCTTGCCAGAACTGA+AGG | 0.506157 | 6_3:-4849799 | Msa0934820:CDS |
| AATCTGGAATGGACAGCGCC+TGG | 0.509801 | 6_3:+4851957 | None:intergenic |
| CACGAGTGGCAAACAACTTG+TGG | 0.515439 | 6_3:+4850191 | None:intergenic |
| TTCATATTCATGAATTGTAA+CGG | 0.516215 | 6_3:+4848580 | None:intergenic |
| TTGACACTGAACAGTTTCAA+AGG | 0.518007 | 6_3:-4854349 | Msa0934820:intron |
| TCGTGGAAAGCATAATCCTC+TGG | 0.518062 | 6_3:-4849376 | Msa0934820:CDS |
| TCAGGATATAGTTTGTTCCC+AGG | 0.524472 | 6_3:-4849568 | Msa0934820:intron |
| CATATACATGAATTAAGAGT+CGG | 0.529356 | 6_3:+4848555 | None:intergenic |
| TTCTGCATGATGTGGGACAC+GGG | 0.529435 | 6_3:-4851632 | Msa0934820:CDS |
| CTTCGCGAGTTGAAACAACT+TGG | 0.538135 | 6_3:-4854217 | Msa0934820:intron |
| ATCATATCTTGACAAGATGC+AGG | 0.542051 | 6_3:+4848815 | None:intergenic |
| GTTAGGACTTCTGCATGATG+TGG | 0.544815 | 6_3:-4851640 | Msa0934820:intron |
| GATGCAACTTTGAATTTCAG+AGG | 0.545820 | 6_3:-4850478 | Msa0934820:CDS |
| GAGAATGCTCAAATCTGGAA+TGG | 0.551432 | 6_3:+4851946 | None:intergenic |
| CTCCAAATTTGCTCTACCTA+GGG | 0.552449 | 6_3:-4850816 | Msa0934820:intron |
| TAGGTTAATGGAGACCATGC+GGG | 0.553236 | 6_3:-4850348 | Msa0934820:CDS |
| AATGGTTGATTATATAGTTG+GGG | 0.560037 | 6_3:-4851342 | Msa0934820:CDS |
| AGTTGATTCTGCGCATTCGA+AGG | 0.562157 | 6_3:-4849767 | Msa0934820:CDS |
| TGGTGGAGTTATGTTGAAAG+AGG | 0.563605 | 6_3:-4849436 | Msa0934820:CDS |
| CTATAATAAGGAAAAGAAGA+AGG | 0.563862 | 6_3:+4848471 | None:intergenic |
| CTTCTGCATGATGTGGGACA+CGG | 0.565706 | 6_3:-4851633 | Msa0934820:CDS |
| ACTCGTGACTGTCGAGCTTG+TGG | 0.569931 | 6_3:-4850506 | Msa0934820:CDS |
| TGGCAAGGGAGAAGTCTCAA+TGG | 0.570504 | 6_3:+4849809 | None:intergenic |
| GCTTCCTTCAGTTCTGGCAA+GGG | 0.575833 | 6_3:+4849795 | None:intergenic |
| TGAGAATCGCTGATAACTCT+GGG | 0.580578 | 6_3:+4851576 | None:intergenic |
| GCTCCAAATTTGCTCTACCT+AGG | 0.581048 | 6_3:-4850817 | Msa0934820:CDS |
| GACAAGATGCAGGCAACAAG+TGG | 0.582338 | 6_3:+4848825 | None:intergenic |
| TTATACGCATCCAAAAGTAA+AGG | 0.591041 | 6_3:-4850149 | Msa0934820:intron |
| ATTACCTTCCAGTATTCACC+AGG | 0.596415 | 6_3:+4849947 | None:intergenic |
| ATGGTCTCCATTAACCTATG+AGG | 0.602845 | 6_3:+4850353 | None:intergenic |
| AACATATGGAATCAAAGCAC+AGG | 0.604310 | 6_3:-4848631 | Msa0934820:CDS |
| TAACGAGTATGCTGTTCCAA+AGG | 0.607057 | 6_3:-4849622 | Msa0934820:CDS |
| TTTATTGAATACCTTTCCAG+AGG | 0.608230 | 6_3:+4849360 | None:intergenic |
| TGATTCTGCGCATTCGAAGG+CGG | 0.611092 | 6_3:-4849764 | Msa0934820:CDS |
| TTAGGACTTCTGCATGATGT+GGG | 0.618531 | 6_3:-4851639 | Msa0934820:intron |
| GAAAGCATAATCCTCTGGAA+AGG | 0.620450 | 6_3:-4849371 | Msa0934820:intron |
| AGATCCTGGTGAATACTGGA+AGG | 0.630470 | 6_3:-4849951 | Msa0934820:intron |
| GAAGAAACGACGTCGTAACG+AGG | 0.632181 | 6_3:+4854603 | None:intergenic |
| TCTATACAGATCGGCACGAG+TGG | 0.634664 | 6_3:+4850177 | None:intergenic |
| CTCGTCATCCAAGACCCGCA+TGG | 0.636946 | 6_3:+4850334 | None:intergenic |
| TAGGTCGCATGAACAAATGT+CGG | 0.639717 | 6_3:-4851369 | Msa0934820:CDS |
| TTGTCAAGATATGATAGTAA+GGG | 0.640152 | 6_3:-4848807 | Msa0934820:CDS |
| ATAAACTGTTCTATACAGAT+CGG | 0.640246 | 6_3:+4850168 | None:intergenic |
| GTAACGAGGAGGCAATGAAA+CGG | 0.641197 | 6_3:+4854617 | None:intergenic |
| AGTGGCAAACAACTTGTGGA+TGG | 0.659577 | 6_3:+4850195 | None:intergenic |
| GAGTTATCAGCGATTCTCAG+TGG | 0.666688 | 6_3:-4851572 | Msa0934820:intron |
| ATAGGTTAATGGAGACCATG+CGG | 0.697313 | 6_3:-4850349 | Msa0934820:CDS |
| GAAACGACGTCGTAACGAGG+AGG | 0.699223 | 6_3:+4854606 | None:intergenic |
| TACAAGTATACAATATACAG+AGG | 0.700591 | 6_3:-4850413 | Msa0934820:CDS |
| TGGGAACAAACTATATCCTG+AGG | 0.705774 | 6_3:+4849570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAAAGCTTATAAAT+AGG | + | chr6_3:4853842-4853861 | None:intergenic | 10.0% |
| !! | TTCTTTATTGTATACTAATA+TGG | - | chr6_3:4848852-4848871 | Msa0934820:CDS | 15.0% |
| !! | AGATTATGATTATTTCAAAA+AGG | + | chr6_3:4848983-4849002 | None:intergenic | 15.0% |
| !! | TTGAAATAATCATAATCTTA+AGG | - | chr6_3:4848985-4849004 | Msa0934820:intron | 15.0% |
| !! | TACAAATTTATAGACTAATT+TGG | - | chr6_3:4849028-4849047 | Msa0934820:intron | 15.0% |
| !! | TAGTAATATTCAAAATCTTA+AGG | + | chr6_3:4849148-4849167 | None:intergenic | 15.0% |
| !!! | AAGATTTTGAATATTACTAA+AGG | - | chr6_3:4849149-4849168 | Msa0934820:intron | 15.0% |
| !!! | AGATTTTGAATATTACTAAA+GGG | - | chr6_3:4849150-4849169 | Msa0934820:intron | 15.0% |
| !! | ATTGTAAGTAGTTAAATATA+AGG | - | chr6_3:4849243-4849262 | Msa0934820:intron | 15.0% |
| !! | AGATTATGAATATTTCAAAT+AGG | + | chr6_3:4849317-4849336 | None:intergenic | 15.0% |
| !! | TTAAAACTATCTTAATAAGA+GGG | + | chr6_3:4849838-4849857 | None:intergenic | 15.0% |
| !!! | TTTAAAACTATCTTAATAAG+AGG | + | chr6_3:4849839-4849858 | None:intergenic | 15.0% |
| !!! | TTAAATTATTTCTGTTGTAA+TGG | - | chr6_3:4849854-4849873 | Msa0934820:intron | 15.0% |
| !!! | TTATTGTTAGTTAATTTTGA+GGG | - | chr6_3:4850335-4850354 | Msa0934820:CDS | 15.0% |
| !!! | ATATCTTTTATTCTCTTTTA+CGG | + | chr6_3:4850725-4850744 | None:intergenic | 15.0% |
| !! | ATAGAATATTTACATTAACA+TGG | + | chr6_3:4852048-4852067 | None:intergenic | 15.0% |
| !! | ATAGACAATTTAAATACAAA+AGG | + | chr6_3:4852240-4852259 | None:intergenic | 15.0% |
| !! | AAAGATTACATAACAATATT+AGG | + | chr6_3:4853733-4853752 | None:intergenic | 15.0% |
| !! | ATTATTCAATATGTAAATGA+AGG | + | chr6_3:4854116-4854135 | None:intergenic | 15.0% |
| !! | AAAGAAAGTAATATTAAACT+TGG | + | chr6_3:4854281-4854300 | None:intergenic | 15.0% |
| !!! | TTTTTGTTATTCTGTGAAAT+GGG | - | chr6_3:4848704-4848723 | Msa0934820:intron | 20.0% |
| !! | CAATAAAGAAACAAAATCAA+TGG | + | chr6_3:4848842-4848861 | None:intergenic | 20.0% |
| !! | AAATTTATAGACTAATTTGG+TGG | - | chr6_3:4849031-4849050 | Msa0934820:intron | 20.0% |
| !! | TTAGAGATATTCATAATCAT+AGG | - | chr6_3:4849289-4849308 | Msa0934820:intron | 20.0% |
| !! | TAGAGATATTCATAATCATA+GGG | - | chr6_3:4849290-4849309 | Msa0934820:intron | 20.0% |
| !! | CAGTTTACTCAATATATATT+CGG | - | chr6_3:4849383-4849402 | Msa0934820:CDS | 20.0% |
| !! | AATATGCATATATAATCTCA+TGG | + | chr6_3:4849492-4849511 | None:intergenic | 20.0% |
| !!! | CGATTATGAATTTTTCAAAA+AGG | + | chr6_3:4849590-4849609 | None:intergenic | 20.0% |
| !! | TTTGAAAAATTCATAATCGT+AGG | - | chr6_3:4849591-4849610 | Msa0934820:CDS | 20.0% |
| !! | AATATATTACTTATCGTCTT+TGG | + | chr6_3:4849985-4850004 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTTATGTCAAAC+AGG | - | chr6_3:4850111-4850130 | Msa0934820:intron | 20.0% |
| !!! | CTTATTGTTAGTTAATTTTG+AGG | - | chr6_3:4850334-4850353 | Msa0934820:CDS | 20.0% |
| !! | AAATAACTCAATATAGTACA+AGG | + | chr6_3:4850428-4850447 | None:intergenic | 20.0% |
| !! | ATTTAGATTTGACATTGAAA+TGG | - | chr6_3:4850511-4850530 | Msa0934820:CDS | 20.0% |
| !!! | TAGTTTTATAGAAACTGAAA+TGG | - | chr6_3:4850799-4850818 | Msa0934820:intron | 20.0% |
| !! | CATAAAACAAATTGATCTAT+GGG | + | chr6_3:4851015-4851034 | None:intergenic | 20.0% |
| !! | ACATAAAACAAATTGATCTA+TGG | + | chr6_3:4851016-4851035 | None:intergenic | 20.0% |
| !!! | ATCAATTTGTTTTATGTTTC+AGG | - | chr6_3:4851019-4851038 | Msa0934820:intron | 20.0% |
| !!! | ACTTAACTGTATCTTTAAAA+GGG | + | chr6_3:4851185-4851204 | None:intergenic | 20.0% |
| !! | AACTTAACTGTATCTTTAAA+AGG | + | chr6_3:4851186-4851205 | None:intergenic | 20.0% |
| !!! | AGAAAGTACTATGTTTTATA+TGG | - | chr6_3:4851561-4851580 | Msa0934820:intron | 20.0% |
| !! | AAAATGGTTGATTATATAGT+TGG | - | chr6_3:4851674-4851693 | Msa0934820:intron | 20.0% |
| !! | AAATGGTTGATTATATAGTT+GGG | - | chr6_3:4851675-4851694 | Msa0934820:intron | 20.0% |
| !! | TAAAAGACAATTGCAAATAA+TGG | + | chr6_3:4851752-4851771 | None:intergenic | 20.0% |
| !!! | TAATACCTTTATTTTCTTGT+TGG | - | chr6_3:4852324-4852343 | Msa0934820:intron | 20.0% |
| !! | AATAACCAACAAGAAAATAA+AGG | + | chr6_3:4852332-4852351 | None:intergenic | 20.0% |
| !! | TTAAATTCTATTATCCTCAT+AGG | - | chr6_3:4852651-4852670 | Msa0934820:intron | 20.0% |
| !! | AATTAAAACCACTAAGTTTA+TGG | + | chr6_3:4852948-4852967 | None:intergenic | 20.0% |
| !! | AATCTTGATAAAAGATAGAA+AGG | + | chr6_3:4853818-4853837 | None:intergenic | 20.0% |
| !!! | GCTTTATATTTTATTGTTGA+TGG | - | chr6_3:4853850-4853869 | Msa0934820:intron | 20.0% |
| !! | TCTTAGTTACATTAAATCAA+AGG | + | chr6_3:4853947-4853966 | None:intergenic | 20.0% |
| !!! | TACGTGAACAATAATTTTAA+GGG | - | chr6_3:4853984-4854003 | Msa0934820:intron | 20.0% |
| !!! | AATTATTTTATACTTGCTAC+TGG | - | chr6_3:4854082-4854101 | Msa0934820:intron | 20.0% |
| !! | ATATTGAATAATATCTGTTC+AGG | - | chr6_3:4854124-4854143 | Msa0934820:intron | 20.0% |
| !! | AAGTAATATTAAACTTGGAT+TGG | + | chr6_3:4854276-4854295 | None:intergenic | 20.0% |
| !! | AATTATCAGCTAAAAACATA+TGG | - | chr6_3:4854373-4854392 | Msa0934820:intron | 20.0% |
| !! | TTCATATTCATGAATTGTAA+CGG | + | chr6_3:4854441-4854460 | None:intergenic | 20.0% |
| !! | ACTTCTTCTATACTATAATA+AGG | + | chr6_3:4854562-4854581 | None:intergenic | 20.0% |
| !! | AAGTAATAGATTCATTGATA+TGG | + | chr6_3:4854697-4854716 | None:intergenic | 20.0% |
| !!! | CTTTTTGTTATTCTGTGAAA+TGG | - | chr6_3:4848703-4848722 | Msa0934820:intron | 25.0% |
| !! | TTTTTGTGTGTATATATTGC+AGG | - | chr6_3:4848778-4848797 | Msa0934820:intron | 25.0% |
| ! | TGTTGAATCACATATATATG+AGG | - | chr6_3:4848879-4848898 | Msa0934820:intron | 25.0% |
| !!! | TATATATGAGGAACTGATTT+TGG | - | chr6_3:4848891-4848910 | Msa0934820:intron | 25.0% |
| !!! | TTTTTACCTGTATTAGTCTT+TGG | - | chr6_3:4848936-4848955 | Msa0934820:intron | 25.0% |
| !!! | TTTTTTAATCAAGAAGCTAC+TGG | - | chr6_3:4849068-4849087 | Msa0934820:intron | 25.0% |
| !! | TTTTTAATCAAGAAGCTACT+GGG | - | chr6_3:4849069-4849088 | Msa0934820:intron | 25.0% |
| ! | AAAGTCAGATATGAATTTAG+TGG | + | chr6_3:4849104-4849123 | None:intergenic | 25.0% |
| ! | AAATTCATATCTGACTTTGT+AGG | - | chr6_3:4849106-4849125 | Msa0934820:intron | 25.0% |
| ! | GAGAATATGTAGTTAAATAC+AGG | - | chr6_3:4849211-4849230 | Msa0934820:intron | 25.0% |
| ! | GAAATTTGTGTATCTTATGT+AGG | - | chr6_3:4849777-4849796 | Msa0934820:CDS | 25.0% |
| ! | AACTAACAATAAGTTACCTA+TGG | + | chr6_3:4850327-4850346 | None:intergenic | 25.0% |
| ! | TCATAAAACTAACACAAATG+AGG | + | chr6_3:4850492-4850511 | None:intergenic | 25.0% |
| !!! | ATTGTGTCTGTATATTTTTG+AGG | - | chr6_3:4850627-4850646 | Msa0934820:CDS | 25.0% |
| ! | ATTTATTGAGGAACCAAATT+GGG | + | chr6_3:4850872-4850891 | None:intergenic | 25.0% |
| ! | TATTTATTGAGGAACCAAAT+TGG | + | chr6_3:4850873-4850892 | None:intergenic | 25.0% |
| !! | ATTTGGTTCCTCAATAAATA+AGG | - | chr6_3:4850873-4850892 | Msa0934820:intron | 25.0% |
| !! | TTTGGTTCCTCAATAAATAA+GGG | - | chr6_3:4850874-4850893 | Msa0934820:intron | 25.0% |
| !!! | ACATTGTCATCATTTTTGTT+AGG | - | chr6_3:4851361-4851380 | Msa0934820:CDS | 25.0% |
| ! | CTTCTTTCTATAACATTACA+AGG | + | chr6_3:4851515-4851534 | None:intergenic | 25.0% |
| !!! | AAGTTTTTCTTGTGTTTCTA+AGG | - | chr6_3:4851532-4851551 | Msa0934820:intron | 25.0% |
| ! | AAAACATAGTACTTTCTTTC+AGG | + | chr6_3:4851558-4851577 | None:intergenic | 25.0% |
| ! | CACACTATATAAACAATGTT+TGG | - | chr6_3:4851612-4851631 | Msa0934820:CDS | 25.0% |
| !! | TTTGGTATTTTGTACTTTGT+AGG | - | chr6_3:4851630-4851649 | Msa0934820:CDS | 25.0% |
| ! | AATGGTTGATTATATAGTTG+GGG | - | chr6_3:4851676-4851695 | Msa0934820:intron | 25.0% |
| ! | CAATATACTTGACATAAAAC+AGG | + | chr6_3:4851775-4851794 | None:intergenic | 25.0% |
| ! | ACTTCTAAACTTCAAAAGAA+AGG | + | chr6_3:4851910-4851929 | None:intergenic | 25.0% |
| !!! | CTTTTGAAGTTTAGAAGTAT+TGG | - | chr6_3:4851912-4851931 | Msa0934820:CDS | 25.0% |
| !!! | CAAATAGCTATTACTTTTGT+TGG | - | chr6_3:4852071-4852090 | Msa0934820:intron | 25.0% |
| ! | TATTCTCAAGAAATATTTGC+CGG | - | chr6_3:4852257-4852276 | Msa0934820:intron | 25.0% |
| ! | TACCTACAATATGAATAAAC+CGG | + | chr6_3:4852279-4852298 | None:intergenic | 25.0% |
| ! | TTGTATGATATTGTTGCAAA+TGG | - | chr6_3:4852376-4852395 | Msa0934820:intron | 25.0% |
| ! | TATACTTGTAAGTTATTGCT+AGG | + | chr6_3:4852595-4852614 | None:intergenic | 25.0% |
| ! | TACAAGTATACAATATACAG+AGG | - | chr6_3:4852605-4852624 | Msa0934820:intron | 25.0% |
| ! | TAAGATCTAGCAAATTACAA+AGG | + | chr6_3:4852803-4852822 | None:intergenic | 25.0% |
| ! | ATAAACTGTTCTATACAGAT+CGG | + | chr6_3:4852853-4852872 | None:intergenic | 25.0% |
| !! | CTAATTCATACCTTTACTTT+TGG | + | chr6_3:4852882-4852901 | None:intergenic | 25.0% |
| ! | GTATGAATTAGTTGCTTATT+CGG | - | chr6_3:4852891-4852910 | Msa0934820:intron | 25.0% |
| ! | TTAATTTCATTTGTTCGTGA+TGG | - | chr6_3:4852917-4852936 | Msa0934820:intron | 25.0% |
| ! | AAATTGTCCATTATATCCTT+TGG | + | chr6_3:4853415-4853434 | None:intergenic | 25.0% |
| ! | ATTAAAAAGATTAAGGACCT+GGG | + | chr6_3:4853470-4853489 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTATTTTTGCCA+AGG | - | chr6_3:4853504-4853523 | Msa0934820:intron | 25.0% |
| !! | TAATCTTTTCTTATCTCTTC+TGG | - | chr6_3:4853745-4853764 | Msa0934820:intron | 25.0% |
| ! | GATGGTGTTTATATTGTATT+AGG | - | chr6_3:4853868-4853887 | Msa0934820:intron | 25.0% |
| ! | TATTGTATTAGGCGATTTAT+TGG | - | chr6_3:4853879-4853898 | Msa0934820:intron | 25.0% |
| ! | ATTGTATTAGGCGATTTATT+GGG | - | chr6_3:4853880-4853899 | Msa0934820:intron | 25.0% |
| !! | GTACGTGAACAATAATTTTA+AGG | - | chr6_3:4853983-4854002 | Msa0934820:intron | 25.0% |
| ! | TTGTCAAGATATGATAGTAA+GGG | - | chr6_3:4854211-4854230 | Msa0934820:intron | 25.0% |
| ! | CATATACATGAATTAAGAGT+CGG | + | chr6_3:4854466-4854485 | None:intergenic | 25.0% |
| !! | TATATGAAAACTGTCTCTTT+TGG | - | chr6_3:4854480-4854499 | Msa0934820:intron | 25.0% |
| ! | CTATAATAAGGAAAAGAAGA+AGG | + | chr6_3:4854550-4854569 | None:intergenic | 25.0% |
| !! | CACTATGGAAATATAGTTTT+GGG | - | chr6_3:4854594-4854613 | Msa0934820:CDS | 25.0% |
| !!! | TATAGTGTAGCATTTGTTTT+TGG | + | chr6_3:4854653-4854672 | None:intergenic | 25.0% |
| !! | ATTAGTCTTTGGATCGAATT+CGG | - | chr6_3:4848947-4848966 | Msa0934820:intron | 30.0% |
| ! | TTTTAATCAAGAAGCTACTG+GGG | - | chr6_3:4849070-4849089 | Msa0934820:intron | 30.0% |
| GTGAAATTTGACAAATTCAG+TGG | + | chr6_3:4849176-4849195 | None:intergenic | 30.0% | |
| AGATTCGGAAACAAATTTAG+TGG | + | chr6_3:4849448-4849467 | None:intergenic | 30.0% | |
| ! | AAATTTGTTTCCGAATCTGT+AGG | - | chr6_3:4849450-4849469 | Msa0934820:intron | 30.0% |
| ! | AATTTGTTTCCGAATCTGTA+GGG | - | chr6_3:4849451-4849470 | Msa0934820:intron | 30.0% |
| ! | TTTTTATCAAGCACCTACTA+TGG | - | chr6_3:4849641-4849660 | Msa0934820:intron | 30.0% |
| GCGTATTTAAATTCCATAGT+AGG | + | chr6_3:4849657-4849676 | None:intergenic | 30.0% | |
| ! | ATGAATTGTTCTTGTTATGC+TGG | - | chr6_3:4849731-4849750 | Msa0934820:intron | 30.0% |
| !! | AATAGCTCTGAAATCTGTAT+TGG | - | chr6_3:4849755-4849774 | Msa0934820:CDS | 30.0% |
| TGTATCTTATGTAGGAACAT+AGG | - | chr6_3:4849785-4849804 | Msa0934820:CDS | 30.0% | |
| GGTTGTTACATTACATATGA+TGG | - | chr6_3:4849886-4849905 | Msa0934820:intron | 30.0% | |
| TCCTAGTCATATATGCTTAA+TGG | - | chr6_3:4850060-4850079 | Msa0934820:intron | 30.0% | |
| ACCATTAAGCATATATGACT+AGG | + | chr6_3:4850064-4850083 | None:intergenic | 30.0% | |
| !! | TGCTTAATGGTTTTACTTGA+AGG | - | chr6_3:4850073-4850092 | Msa0934820:intron | 30.0% |
| TTTATATTGCTTTCGTGATC+TGG | - | chr6_3:4850135-4850154 | Msa0934820:intron | 30.0% | |
| GGCAGTATTATTGTACTTAT+TGG | - | chr6_3:4850386-4850405 | Msa0934820:CDS | 30.0% | |
| ! | AGACACAATTTTACATCATG+TGG | + | chr6_3:4850616-4850635 | None:intergenic | 30.0% |
| TCCATGTGTATATGTATGTT+TGG | - | chr6_3:4850668-4850687 | Msa0934820:intron | 30.0% | |
| ACCAAACATACATATACACA+TGG | + | chr6_3:4850672-4850691 | None:intergenic | 30.0% | |
| TTTATTGAGGAACCAAATTG+GGG | + | chr6_3:4850871-4850890 | None:intergenic | 30.0% | |
| ! | CTTATTGCCCTTATTTATTG+AGG | + | chr6_3:4850884-4850903 | None:intergenic | 30.0% |
| AGTAATCTGTTCATAACGAT+AGG | - | chr6_3:4850902-4850921 | Msa0934820:intron | 30.0% | |
| GTAATCTGTTCATAACGATA+GGG | - | chr6_3:4850903-4850922 | Msa0934820:intron | 30.0% | |
| TTATATACCAGCAAGTTTCA+CGG | + | chr6_3:4851285-4851304 | None:intergenic | 30.0% | |
| ! | TGACTCTTTTTAACATGTGA+GGG | + | chr6_3:4851721-4851740 | None:intergenic | 30.0% |
| ! | TTGACTCTTTTTAACATGTG+AGG | + | chr6_3:4851722-4851741 | None:intergenic | 30.0% |
| TCACATGTTAAAAAGAGTCA+AGG | - | chr6_3:4851721-4851740 | Msa0934820:intron | 30.0% | |
| ! | CATCATAAGCATGATGTTTT+AGG | - | chr6_3:4851819-4851838 | Msa0934820:intron | 30.0% |
| !!! | TGGACACTTTTTGAAACTTA+CGG | - | chr6_3:4851932-4851951 | Msa0934820:CDS | 30.0% |
| AAGCATGTTGCATATTCTAA+TGG | - | chr6_3:4852140-4852159 | Msa0934820:intron | 30.0% | |
| AGCATGTTGCATATTCTAAT+GGG | - | chr6_3:4852141-4852160 | Msa0934820:intron | 30.0% | |
| ! | TATTCTAATGGGTGGTTATT+TGG | - | chr6_3:4852152-4852171 | Msa0934820:intron | 30.0% |
| TGCTGTAATGTAATGATTTG+TGG | - | chr6_3:4852459-4852478 | Msa0934820:intron | 30.0% | |
| CTATTATCCTCATAGGTTAA+TGG | - | chr6_3:4852658-4852677 | Msa0934820:intron | 30.0% | |
| CTAGCAAATTACAAAGGAAA+AGG | + | chr6_3:4852797-4852816 | None:intergenic | 30.0% | |
| TTATACGCATCCAAAAGTAA+AGG | - | chr6_3:4852869-4852888 | Msa0934820:intron | 30.0% | |
| AATACTGGAAGGTAATTATG+AGG | - | chr6_3:4853078-4853097 | Msa0934820:intron | 30.0% | |
| ATACTGGAAGGTAATTATGA+GGG | - | chr6_3:4853079-4853098 | Msa0934820:intron | 30.0% | |
| AGCTGATTAAGTTTCTGTTT+CGG | - | chr6_3:4853361-4853380 | Msa0934820:intron | 30.0% | |
| GATTAAAAAGATTAAGGACC+TGG | + | chr6_3:4853471-4853490 | None:intergenic | 30.0% | |
| GAGCAGGATTAAAAAGATTA+AGG | + | chr6_3:4853477-4853496 | None:intergenic | 30.0% | |
| TTTATTGAATACCTTTCCAG+AGG | + | chr6_3:4853661-4853680 | None:intergenic | 30.0% | |
| GTAATAATACATGTCGATAG+TGG | - | chr6_3:4853686-4853705 | Msa0934820:intron | 30.0% | |
| ! | TTTATTGGGTGATAATGTCA+AGG | - | chr6_3:4853894-4853913 | Msa0934820:intron | 30.0% |
| CTTGTCAAGATATGATAGTA+AGG | - | chr6_3:4854210-4854229 | Msa0934820:intron | 30.0% | |
| !!! | CTGAAATTTTTTCCACCTAT+AGG | + | chr6_3:4854342-4854361 | None:intergenic | 30.0% |
| ATAGGTGGAAAAAATTTCAG+AGG | - | chr6_3:4854342-4854361 | Msa0934820:intron | 30.0% | |
| !!! | TACTGCTACAACTACTTTTT+TGG | - | chr6_3:4854524-4854543 | Msa0934820:intron | 30.0% |
| ! | AGTCATCATATTTTCCACTA+TGG | - | chr6_3:4854579-4854598 | Msa0934820:CDS | 30.0% |
| CCAAAACTATATTTCCATAG+TGG | + | chr6_3:4854596-4854615 | None:intergenic | 30.0% | |
| ! | CCACTATGGAAATATAGTTT+TGG | - | chr6_3:4854593-4854612 | Msa0934820:CDS | 30.0% |
| TTGACACTGAACAGTTTCAA+AGG | - | chr6_3:4848669-4848688 | Msa0934820:CDS | 35.0% | |
| TTCGATCCAAAGACTAATAC+AGG | + | chr6_3:4848945-4848964 | None:intergenic | 35.0% | |
| GGACTAATATTTGACAGAGT+CGG | + | chr6_3:4849527-4849546 | None:intergenic | 35.0% | |
| GTAAACCACTAAATTCGTCA+AGG | + | chr6_3:4849619-4849638 | None:intergenic | 35.0% | |
| CTGTTGTAATGGTTGAAATC+AGG | - | chr6_3:4849865-4849884 | Msa0934820:intron | 35.0% | |
| TACAAAAAACCAGAAACCAG+AGG | + | chr6_3:4850269-4850288 | None:intergenic | 35.0% | |
| !!! | TCTGGTTTCTGGTTTTTTGT+AGG | - | chr6_3:4850268-4850287 | Msa0934820:intron | 35.0% |
| !!! | TTTTTTGTAGGTTCAGTGCA+AGG | - | chr6_3:4850280-4850299 | Msa0934820:intron | 35.0% |
| !! | TGTACTTATTGGCTCTATTC+TGG | - | chr6_3:4850397-4850416 | Msa0934820:CDS | 35.0% |
| CAATCACAGTTTCACGAAAT+TGG | + | chr6_3:4850561-4850580 | None:intergenic | 35.0% | |
| ! | CACAATTTTACATCATGTGG+CGG | + | chr6_3:4850613-4850632 | None:intergenic | 35.0% |
| TGGGAGAGATCATATACTAA+AGG | + | chr6_3:4850996-4851015 | None:intergenic | 35.0% | |
| CATATGTCTGTGATCTTACA+GGG | - | chr6_3:4851224-4851243 | Msa0934820:intron | 35.0% | |
| TGAACAAATGTCGGTCAAAA+TGG | - | chr6_3:4851658-4851677 | Msa0934820:intron | 35.0% | |
| TGTGAGGGTCAATATCAATA+TGG | + | chr6_3:4851706-4851725 | None:intergenic | 35.0% | |
| ATGTTGCATATTCTAATGGG+TGG | - | chr6_3:4852144-4852163 | Msa0934820:intron | 35.0% | |
| !! | TGCCGGTTTATTCATATTGT+AGG | - | chr6_3:4852274-4852293 | Msa0934820:intron | 35.0% |
| ! | ATTTAGAGCTCAAGTGAGAA+AGG | - | chr6_3:4852349-4852368 | Msa0934820:intron | 35.0% |
| ATTGTTGCAAATGGACGAAA+TGG | - | chr6_3:4852385-4852404 | Msa0934820:intron | 35.0% | |
| GATGCAACTTTGAATTTCAG+AGG | - | chr6_3:4852540-4852559 | Msa0934820:intron | 35.0% | |
| TAACTTCGAAAAAATGCAGC+TGG | - | chr6_3:4853168-4853187 | Msa0934820:intron | 35.0% | |
| TGCTGTTCCAAAGGATATAA+TGG | - | chr6_3:4853405-4853424 | Msa0934820:intron | 35.0% | |
| AAAAACATGTGCAAATGAGC+AGG | + | chr6_3:4853493-4853512 | None:intergenic | 35.0% | |
| ! | ATTTTTGCCAAGGTTCAACA+AGG | - | chr6_3:4853514-4853533 | Msa0934820:intron | 35.0% |
| TAAAGTTCCTTGTTGAACCT+TGG | + | chr6_3:4853524-4853543 | None:intergenic | 35.0% | |
| ACCACCATTTGACAGAAAAA+TGG | - | chr6_3:4853562-4853581 | Msa0934820:intron | 35.0% | |
| !! | ACCATTTTTCTGTCAAATGG+TGG | + | chr6_3:4853566-4853585 | None:intergenic | 35.0% |
| ACCATTTGACAGAAAAATGG+TGG | - | chr6_3:4853565-4853584 | Msa0934820:intron | 35.0% | |
| !! | TCCACCATTTTTCTGTCAAA+TGG | + | chr6_3:4853569-4853588 | None:intergenic | 35.0% |
| ATCATATCTTGACAAGATGC+AGG | + | chr6_3:4854206-4854225 | None:intergenic | 35.0% | |
| TTAACTTTACTGACCAGTTC+TGG | + | chr6_3:4854251-4854270 | None:intergenic | 35.0% | |
| TGACCTTTGAACAATCCTAT+AGG | - | chr6_3:4854324-4854343 | Msa0934820:intron | 35.0% | |
| AACATATGGAATCAAAGCAC+AGG | - | chr6_3:4854387-4854406 | Msa0934820:intron | 35.0% | |
| !!! | TGTAGCATTTGTTTTTGGTG+TGG | + | chr6_3:4854648-4854667 | None:intergenic | 35.0% |
| ! | CACGTTCATGATAACGTTCA+TGG | - | chr6_3:4848448-4848467 | Msa0934820:three_prime_UTR | 40.0% |
| TTGGATCGAATTCGGATGTT+AGG | - | chr6_3:4848955-4848974 | Msa0934820:intron | 40.0% | |
| TTTGTAGGCTGCACTCAAAT+AGG | - | chr6_3:4849121-4849140 | Msa0934820:intron | 40.0% | |
| TTGAGAGTTCCCTACAGATT+CGG | + | chr6_3:4849463-4849482 | None:intergenic | 40.0% | |
| ! | ACCAATTCAATGGTGATGCT+TGG | - | chr6_3:4849562-4849581 | Msa0934820:intron | 40.0% |
| ! | CCAATTCAATGGTGATGCTT+GGG | - | chr6_3:4849563-4849582 | Msa0934820:intron | 40.0% |
| AGGAACCTTGACGAATTTAG+TGG | - | chr6_3:4849611-4849630 | Msa0934820:CDS | 40.0% | |
| ATATTGCTTTCGTGATCTGG+TGG | - | chr6_3:4850138-4850157 | Msa0934820:intron | 40.0% | |
| TATTGCTTTCGTGATCTGGT+GGG | - | chr6_3:4850139-4850158 | Msa0934820:intron | 40.0% | |
| !! | TAGACTGATTTGAGTCAGTG+TGG | - | chr6_3:4850172-4850191 | Msa0934820:CDS | 40.0% |
| !! | AGACTGATTTGAGTCAGTGT+GGG | - | chr6_3:4850173-4850192 | Msa0934820:CDS | 40.0% |
| !! | CATAGGTTTGTTGTGGTTTC+CGG | - | chr6_3:4850225-4850244 | Msa0934820:intron | 40.0% |
| !! | TTTTTAGTGCCTCTGGTTTC+TGG | - | chr6_3:4850257-4850276 | Msa0934820:intron | 40.0% |
| !! | TTTTGAGGGTAGCATTCCTT+TGG | - | chr6_3:4850349-4850368 | Msa0934820:CDS | 40.0% |
| TACAATAATACTGCCACAGC+AGG | + | chr6_3:4850381-4850400 | None:intergenic | 40.0% | |
| !! | TGTTTCAGGTTTCACACACT+TGG | - | chr6_3:4851033-4851052 | Msa0934820:intron | 40.0% |
| GAGAATGCTCAAATCTGGAA+TGG | + | chr6_3:4851075-4851094 | None:intergenic | 40.0% | |
| TCCAGATTTGAGCATTCTCT+TGG | - | chr6_3:4851076-4851095 | Msa0934820:intron | 40.0% | |
| TCCAAGAGAATGCTCAAATC+TGG | + | chr6_3:4851080-4851099 | None:intergenic | 40.0% | |
| AGCATTCTCTTGGAGTGTAT+TGG | - | chr6_3:4851086-4851105 | Msa0934820:intron | 40.0% | |
| GCATATGTCTGTGATCTTAC+AGG | - | chr6_3:4851223-4851242 | Msa0934820:intron | 40.0% | |
| ATTCAATCCGTGAAACTTGC+TGG | - | chr6_3:4851275-4851294 | Msa0934820:intron | 40.0% | |
| TTAGGACTTCTGCATGATGT+GGG | - | chr6_3:4851379-4851398 | Msa0934820:intron | 40.0% | |
| CGTTCAAACAAGTGACTGAA+TGG | + | chr6_3:4851412-4851431 | None:intergenic | 40.0% | |
| TGAGAATCGCTGATAACTCT+GGG | + | chr6_3:4851445-4851464 | None:intergenic | 40.0% | |
| TAGGTCGCATGAACAAATGT+CGG | - | chr6_3:4851649-4851668 | Msa0934820:intron | 40.0% | |
| ! | ATTAACATGGAAGCGTACTC+AGG | + | chr6_3:4852035-4852054 | None:intergenic | 40.0% |
| CACTTGGCAGGAAATGATAT+TGG | - | chr6_3:4852175-4852194 | Msa0934820:intron | 40.0% | |
| ! | CTCCAAATTTGCTCTACCTA+GGG | - | chr6_3:4852202-4852221 | Msa0934820:intron | 40.0% |
| TACCCTAGGTAGAGCAAATT+TGG | + | chr6_3:4852207-4852226 | None:intergenic | 40.0% | |
| AAGGTTACAAGTCTTACCCT+AGG | + | chr6_3:4852221-4852240 | None:intergenic | 40.0% | |
| ATGGTCTCCATTAACCTATG+AGG | + | chr6_3:4852668-4852687 | None:intergenic | 40.0% | |
| ATAGGTTAATGGAGACCATG+CGG | - | chr6_3:4852669-4852688 | Msa0934820:intron | 40.0% | |
| TGGTGCATCCATAAACTTAG+TGG | - | chr6_3:4852937-4852956 | Msa0934820:intron | 40.0% | |
| CATCTCATCTTTCTGTTTCC+AGG | - | chr6_3:4852974-4852993 | Msa0934820:intron | 40.0% | |
| ATCTTTCTGTTTCCAGGCAA+TGG | - | chr6_3:4852980-4852999 | Msa0934820:intron | 40.0% | |
| TTTCCAGGCAATGGATCTAA+TGG | - | chr6_3:4852989-4853008 | Msa0934820:intron | 40.0% | |
| TCTTCTAGCATTCAAGATCC+TGG | - | chr6_3:4853053-4853072 | Msa0934820:intron | 40.0% | |
| TTCAAGATCCTGGTGAATAC+TGG | - | chr6_3:4853063-4853082 | Msa0934820:intron | 40.0% | |
| ATTACCTTCCAGTATTCACC+AGG | + | chr6_3:4853074-4853093 | None:intergenic | 40.0% | |
| TAACGAGTATGCTGTTCCAA+AGG | - | chr6_3:4853396-4853415 | Msa0934820:intron | 40.0% | |
| !! | TTTTAAGAAAGTCGCTCCTC+AGG | - | chr6_3:4853432-4853451 | Msa0934820:intron | 40.0% |
| TGGGAACAAACTATATCCTG+AGG | + | chr6_3:4853451-4853470 | None:intergenic | 40.0% | |
| !! | TCAGGATATAGTTTGTTCCC+AGG | - | chr6_3:4853450-4853469 | Msa0934820:intron | 40.0% |
| TGGTGGAGTTATGTTGAAAG+AGG | - | chr6_3:4853582-4853601 | Msa0934820:intron | 40.0% | |
| !! | GTCAAAATCGATTTGACTCG+TGG | - | chr6_3:4853625-4853644 | Msa0934820:intron | 40.0% |
| ! | GAAAGCATAATCCTCTGGAA+AGG | - | chr6_3:4853647-4853666 | Msa0934820:intron | 40.0% |
| AGGAAGTTCAGACAAACTGA+AGG | + | chr6_3:4853713-4853732 | None:intergenic | 40.0% | |
| ! | ATCTCTTCTGGTGCATGTTT+TGG | - | chr6_3:4853757-4853776 | Msa0934820:intron | 40.0% |
| !!! | TGGCAGCATTCACTTTTTCA+AGG | - | chr6_3:4853780-4853799 | Msa0934820:intron | 40.0% |
| GTACTCAAAAAAGCCAGAAC+TGG | - | chr6_3:4854235-4854254 | Msa0934820:intron | 40.0% | |
| CCACCTATAGGATTGTTCAA+AGG | + | chr6_3:4854330-4854349 | None:intergenic | 40.0% | |
| CCTTTGAACAATCCTATAGG+TGG | - | chr6_3:4854327-4854346 | Msa0934820:intron | 40.0% | |
| TAACGGCGTTTCTTCTTATC+TGG | + | chr6_3:4854424-4854443 | None:intergenic | 40.0% | |
| AACAGCAACAGCAACAGCAA+TGG | - | chr6_3:4848354-4848373 | Msa0934820:three_prime_UTR | 45.0% | |
| ACAGCAACAGCAACAGCAAT+GGG | - | chr6_3:4848361-4848380 | Msa0934820:three_prime_UTR | 45.0% | |
| GTAACGAGGAGGCAATGAAA+CGG | + | chr6_3:4848404-4848423 | None:intergenic | 45.0% | |
| ! | CTTCGCGAGTTGAAACAACT+TGG | - | chr6_3:4848801-4848820 | Msa0934820:CDS | 45.0% |
| ATTAGTCCTTACCAGAGTCG+AGG | - | chr6_3:4849539-4849558 | Msa0934820:intron | 45.0% | |
| ATTGAATTGGTCCTCGACTC+TGG | + | chr6_3:4849553-4849572 | None:intergenic | 45.0% | |
| AGAGTCGAGGACCAATTCAA+TGG | - | chr6_3:4849552-4849571 | Msa0934820:intron | 45.0% | |
| CCCAAGCATCACCATTGAAT+TGG | + | chr6_3:4849566-4849585 | None:intergenic | 45.0% | |
| AAGTGAGTCGACTGTTATCG+AGG | - | chr6_3:4850012-4850031 | Msa0934820:CDS | 45.0% | |
| TGATTTGAGTCAGTGTGGGA+CGG | - | chr6_3:4850177-4850196 | Msa0934820:CDS | 45.0% | |
| !! | GTCTTGGCATAGGTTTGTTG+TGG | - | chr6_3:4850218-4850237 | Msa0934820:intron | 45.0% |
| GCACTAAAAAAGCCTTCCAC+CGG | + | chr6_3:4850247-4850266 | None:intergenic | 45.0% | |
| !!! | GAAGGCTTTTTTAGTGCCTC+TGG | - | chr6_3:4850250-4850269 | Msa0934820:intron | 45.0% |
| !! | GTTCAGTGCAAGGAGTGTTA+GGG | - | chr6_3:4850290-4850309 | Msa0934820:intron | 45.0% |
| !! | TTCAGTGCAAGGAGTGTTAG+GGG | - | chr6_3:4850291-4850310 | Msa0934820:intron | 45.0% |
| ! | TAGGGGCTTTGATGTTCCAT+AGG | - | chr6_3:4850308-4850327 | Msa0934820:intron | 45.0% |
| CCACAGCAGGAAAAAACCAA+AGG | + | chr6_3:4850368-4850387 | None:intergenic | 45.0% | |
| !!! | CCTTTGGTTTTTTCCTGCTG+TGG | - | chr6_3:4850365-4850384 | Msa0934820:CDS | 45.0% |
| !! | CGTTGTGTTGGTTGTGTCAA+TGG | + | chr6_3:4850844-4850863 | None:intergenic | 45.0% |
| TTGACACAACCAACACAACG+AGG | - | chr6_3:4850844-4850863 | Msa0934820:intron | 45.0% | |
| !! | TTCACACACTTGGTGTATCC+AGG | - | chr6_3:4851043-4851062 | Msa0934820:intron | 45.0% |
| CTTGGAGTGTATTGGATTGC+TGG | - | chr6_3:4851094-4851113 | Msa0934820:intron | 45.0% | |
| GTTAGGACTTCTGCATGATG+TGG | - | chr6_3:4851378-4851397 | Msa0934820:intron | 45.0% | |
| CTGAGAATCGCTGATAACTC+TGG | + | chr6_3:4851446-4851465 | None:intergenic | 45.0% | |
| GAGTTATCAGCGATTCTCAG+TGG | - | chr6_3:4851446-4851465 | Msa0934820:intron | 45.0% | |
| ATGACTGATGCTGATAGCCA+CGG | - | chr6_3:4851959-4851978 | Msa0934820:CDS | 45.0% | |
| ! | TGGAAGCGTACTCAGGAAAT+CGG | + | chr6_3:4852028-4852047 | None:intergenic | 45.0% |
| ATGGGTGGTTATTTGGCACT+TGG | - | chr6_3:4852159-4852178 | Msa0934820:intron | 45.0% | |
| ! | GCTCCAAATTTGCTCTACCT+AGG | - | chr6_3:4852201-4852220 | Msa0934820:intron | 45.0% |
| TAGGTTAATGGAGACCATGC+GGG | - | chr6_3:4852670-4852689 | Msa0934820:intron | 45.0% | |
| AGTGGCAAACAACTTGTGGA+TGG | + | chr6_3:4852826-4852845 | None:intergenic | 45.0% | |
| CAACCATTAGATCCATTGCC+TGG | + | chr6_3:4852995-4853014 | None:intergenic | 45.0% | |
| AGATCCTGGTGAATACTGGA+AGG | - | chr6_3:4853067-4853086 | Msa0934820:intron | 45.0% | |
| ! | TCTCTAGCTTCCTTCAGTTC+TGG | + | chr6_3:4853232-4853251 | None:intergenic | 45.0% |
| ! | AGTTGATTCTGCGCATTCGA+AGG | - | chr6_3:4853251-4853270 | Msa0934820:intron | 45.0% |
| ! | TCGTGGAAAGCATAATCCTC+TGG | - | chr6_3:4853642-4853661 | Msa0934820:intron | 45.0% |
| !! | TCTTCTGGTGCATGTTTTGG+TGG | - | chr6_3:4853760-4853779 | Msa0934820:intron | 45.0% |
| !! | AATAAAATAAAAATTATACT+TGG | + | chr6_3:4851147-4851166 | None:intergenic | 5.0% |
| !!! | AAATAATTTTAAAAAATGAA+TGG | + | chr6_3:4851338-4851357 | None:intergenic | 5.0% |
| GAAGAAACGACGTCGTAACG+AGG | + | chr6_3:4848418-4848437 | None:intergenic | 50.0% | |
| ATTGGTCCTCGACTCTGGTA+AGG | + | chr6_3:4849548-4849567 | None:intergenic | 50.0% | |
| !! | CTTTCGTGATCTGGTGGGTT+TGG | - | chr6_3:4850144-4850163 | Msa0934820:intron | 50.0% |
| TAGGTTTGCCAGGTGTGTCT+TGG | - | chr6_3:4850202-4850221 | Msa0934820:CDS | 50.0% | |
| AACCTATGCCAAGACACACC+TGG | + | chr6_3:4850213-4850232 | None:intergenic | 50.0% | |
| !! | AGGTTTGTTGTGGTTTCCGG+TGG | - | chr6_3:4850228-4850247 | Msa0934820:intron | 50.0% |
| TTGTTGTGGTTTCCGGTGGA+AGG | - | chr6_3:4850232-4850251 | Msa0934820:intron | 50.0% | |
| !! | GGTTCAGTGCAAGGAGTGTT+AGG | - | chr6_3:4850289-4850308 | Msa0934820:intron | 50.0% |
| AATTGGGGACCTCGTTGTGT+TGG | + | chr6_3:4850856-4850875 | None:intergenic | 50.0% | |
| ACACAACGAGGTCCCCAATT+TGG | - | chr6_3:4850856-4850875 | Msa0934820:intron | 50.0% | |
| GTCTGTGATCTTACAGGGCA+TGG | - | chr6_3:4851229-4851248 | Msa0934820:intron | 50.0% | |
| ATCTTACAGGGCATGGAGCT+TGG | - | chr6_3:4851236-4851255 | Msa0934820:intron | 50.0% | |
| CTTCTGCATGATGTGGGACA+CGG | - | chr6_3:4851385-4851404 | Msa0934820:intron | 50.0% | |
| TTCTGCATGATGTGGGACAC+GGG | - | chr6_3:4851386-4851405 | Msa0934820:intron | 50.0% | |
| TGACTGATGCTGATAGCCAC+GGG | - | chr6_3:4851960-4851979 | Msa0934820:CDS | 50.0% | |
| ! | GGAAGCGTACTCAGGAAATC+GGG | + | chr6_3:4852027-4852046 | None:intergenic | 50.0% |
| GTGGTTATTTGGCACTTGGC+AGG | - | chr6_3:4852163-4852182 | Msa0934820:intron | 50.0% | |
| CACGAGTGGCAAACAACTTG+TGG | + | chr6_3:4852830-4852849 | None:intergenic | 50.0% | |
| TCTATACAGATCGGCACGAG+TGG | + | chr6_3:4852844-4852863 | None:intergenic | 50.0% | |
| TGGCAAGGGAGAAGTCTCAA+TGG | + | chr6_3:4853212-4853231 | None:intergenic | 50.0% | |
| TTCTCCCTTGCCAGAACTGA+AGG | - | chr6_3:4853219-4853238 | Msa0934820:intron | 50.0% | |
| ! | GCTTCCTTCAGTTCTGGCAA+GGG | + | chr6_3:4853226-4853245 | None:intergenic | 50.0% |
| ! | AGCTTCCTTCAGTTCTGGCA+AGG | + | chr6_3:4853227-4853246 | None:intergenic | 50.0% |
| TGATTCTGCGCATTCGAAGG+CGG | - | chr6_3:4853254-4853273 | Msa0934820:intron | 50.0% | |
| AAGTGGCTTATGCGCTCATC+AGG | + | chr6_3:4854179-4854198 | None:intergenic | 50.0% | |
| GACAAGATGCAGGCAACAAG+TGG | + | chr6_3:4854196-4854215 | None:intergenic | 50.0% | |
| GAAACGACGTCGTAACGAGG+AGG | + | chr6_3:4848415-4848434 | None:intergenic | 55.0% | |
| GAGTCAGTGTGGGACGGTAT+AGG | - | chr6_3:4850183-4850202 | Msa0934820:CDS | 55.0% | |
| TGGGACGGTATAGGTTTGCC+AGG | - | chr6_3:4850192-4850211 | Msa0934820:CDS | 55.0% | |
| TGCCAGGTGTGTCTTGGCAT+AGG | - | chr6_3:4850208-4850227 | Msa0934820:intron | 55.0% | |
| ! | AATCTGGAATGGACAGCGCC+TGG | + | chr6_3:4851064-4851083 | None:intergenic | 55.0% |
| ACTCGTGACTGTCGAGCTTG+TGG | - | chr6_3:4852512-4852531 | Msa0934820:intron | 55.0% | |
| TGACTGTCGAGCTTGTGGTC+TGG | - | chr6_3:4852517-4852536 | Msa0934820:intron | 55.0% | |
| GACTGTCGAGCTTGTGGTCT+GGG | - | chr6_3:4852518-4852537 | Msa0934820:intron | 55.0% | |
| AATGGAGACCATGCGGGTCT+TGG | - | chr6_3:4852676-4852695 | Msa0934820:intron | 55.0% | |
| GATTCTGCGCATTCGAAGGC+GGG | - | chr6_3:4853255-4853274 | Msa0934820:intron | 55.0% | |
| TCGAAGGCGGGATCTCTATC+AGG | - | chr6_3:4853267-4853286 | Msa0934820:intron | 55.0% | |
| GTAGCGCACAGAACTACCCG+TGG | + | chr6_3:4851979-4851998 | None:intergenic | 60.0% | |
| CTCGTCATCCAAGACCCGCA+TGG | + | chr6_3:4852687-4852706 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 4848317 | 4854723 | 4848317 | ID=Msa0934820;Name=Msa0934820 |
| chr6_3 | mRNA | 4848317 | 4854723 | 4848317 | ID=Msa0934820-mRNA-1;Parent=Msa0934820;Name=Msa0934820-mRNA-1;_AED=0.24;_eAED=0.24;_QI=62|1|0.94|1|0.94|0.89|19|227|506 |
| chr6_3 | exon | 4848317 | 4848397 | 4848317 | ID=Msa0934820-mRNA-1:exon:1540;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4848441 | 4848694 | 4848441 | ID=Msa0934820-mRNA-1:exon:1539;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4848784 | 4848894 | 4848784 | ID=Msa0934820-mRNA-1:exon:1538;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4849239 | 4849254 | 4849239 | ID=Msa0934820-mRNA-1:exon:1537;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4849372 | 4849463 | 4849372 | ID=Msa0934820-mRNA-1:exon:1536;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4849569 | 4849649 | 4849569 | ID=Msa0934820-mRNA-1:exon:1535;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4849752 | 4849853 | 4849752 | ID=Msa0934820-mRNA-1:exon:1534;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4849952 | 4850044 | 4849952 | ID=Msa0934820-mRNA-1:exon:1533;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4850150 | 4850223 | 4850150 | ID=Msa0934820-mRNA-1:exon:1532;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4850312 | 4850541 | 4850312 | ID=Msa0934820-mRNA-1:exon:1531;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4850618 | 4850685 | 4850618 | ID=Msa0934820-mRNA-1:exon:1530;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4850817 | 4850855 | 4850817 | ID=Msa0934820-mRNA-1:exon:1529;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4851298 | 4851388 | 4851298 | ID=Msa0934820-mRNA-1:exon:1528;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4851573 | 4851657 | 4851573 | ID=Msa0934820-mRNA-1:exon:1527;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4851744 | 4851795 | 4851744 | ID=Msa0934820-mRNA-1:exon:1526;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4851893 | 4851999 | 4851893 | ID=Msa0934820-mRNA-1:exon:1525;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4854218 | 4854240 | 4854218 | ID=Msa0934820-mRNA-1:exon:1524;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4854350 | 4854387 | 4854350 | ID=Msa0934820-mRNA-1:exon:1523;Parent=Msa0934820-mRNA-1 |
| chr6_3 | exon | 4854551 | 4854723 | 4854551 | ID=Msa0934820-mRNA-1:exon:1522;Parent=Msa0934820-mRNA-1 |
| chr6_3 | five_prime_UTR | 4854662 | 4854723 | 4854662 | ID=Msa0934820-mRNA-1:five_prime_utr;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4854551 | 4854661 | 4854551 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4854350 | 4854387 | 4854350 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4854218 | 4854240 | 4854218 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4851893 | 4851999 | 4851893 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4851744 | 4851795 | 4851744 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4851573 | 4851657 | 4851573 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4851298 | 4851388 | 4851298 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4850817 | 4850855 | 4850817 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4850618 | 4850685 | 4850618 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4850312 | 4850541 | 4850312 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4850150 | 4850223 | 4850150 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4849952 | 4850044 | 4849952 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4849752 | 4849853 | 4849752 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4849569 | 4849649 | 4849569 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4849372 | 4849463 | 4849372 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4849239 | 4849254 | 4849239 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4848784 | 4848894 | 4848784 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | CDS | 4848587 | 4848694 | 4848587 | ID=Msa0934820-mRNA-1:cds;Parent=Msa0934820-mRNA-1 |
| chr6_3 | three_prime_UTR | 4848441 | 4848586 | 4848441 | ID=Msa0934820-mRNA-1:three_prime_utr;Parent=Msa0934820-mRNA-1 |
| chr6_3 | three_prime_UTR | 4848317 | 4848397 | 4848317 | ID=Msa0934820-mRNA-1:three_prime_utr;Parent=Msa0934820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
