Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047990 | XP_039686677.1 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 8.11e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047990 | sp|M1C146|ATG8C_SOLTU | 95.726 | 117 | 5 | 0 | 1 | 117 | 1 | 117 | 5.14e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047990 | Msa0219140 | -0.815694 | 8.106715e-52 | -8.615850e-47 |
| Msa0047990 | Msa0258960 | -0.810491 | 1.122557e-50 | -8.615850e-47 |
| Msa0047990 | Msa0260820 | 0.875262 | 3.539045e-68 | -8.615850e-47 |
| Msa0047990 | Msa0427850 | 0.811307 | 7.475102e-51 | -8.615850e-47 |
| Msa0047990 | Msa0463890 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0047990 | Msa1257170 | 0.805646 | 1.207490e-49 | -8.615850e-47 |
| Msa0047990 | Msa1258600 | 0.826650 | 2.415218e-54 | -8.615850e-47 |
| Msa0047990 | Msa1298440 | 0.827691 | 1.360170e-54 | -8.615850e-47 |
| Msa0047990 | Msa1400940 | 0.829302 | 5.554227e-55 | -8.615850e-47 |
| Msa0047990 | Msa1431050 | 0.920235 | 1.654460e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047990 | MtrunA17_Chr2g0322571 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 7.46e-85 | 243 |
| Msa0047990 | MtrunA17_Chr4g0024721 | 95.833 | 120 | 5 | 0 | 1 | 120 | 1 | 120 | 1.05e-82 | 237 |
| Msa0047990 | MtrunA17_Chr2g0288531 | 81.197 | 117 | 22 | 0 | 1 | 117 | 1 | 117 | 1.30e-71 | 209 |
| Msa0047990 | MtrunA17_Chr4g0056301 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 3.69e-71 | 208 |
| Msa0047990 | MtrunA17_Chr4g0019141 | 63.478 | 115 | 40 | 1 | 1 | 113 | 1 | 115 | 6.39e-49 | 152 |
| Msa0047990 | MtrunA17_Chr4g0069171 | 57.018 | 114 | 49 | 0 | 4 | 117 | 5 | 118 | 1.13e-47 | 149 |
| Msa0047990 | MtrunA17_Chr7g0260981 | 56.140 | 114 | 50 | 0 | 4 | 117 | 5 | 118 | 1.89e-47 | 148 |
| Msa0047990 | MtrunA17_Chr1g0194141 | 54.310 | 116 | 53 | 0 | 2 | 117 | 3 | 118 | 4.25e-42 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047990 | AT2G05630.1 | 91.667 | 120 | 10 | 0 | 1 | 120 | 1 | 120 | 3.69e-78 | 226 |
| Msa0047990 | AT1G62040.1 | 89.916 | 119 | 12 | 0 | 1 | 119 | 1 | 119 | 9.29e-78 | 225 |
| Msa0047990 | AT4G21980.2 | 84.874 | 119 | 18 | 0 | 1 | 119 | 16 | 134 | 2.54e-72 | 212 |
| Msa0047990 | AT4G21980.1 | 84.874 | 119 | 18 | 0 | 1 | 119 | 1 | 119 | 2.78e-72 | 211 |
| Msa0047990 | AT2G05630.2 | 91.743 | 109 | 9 | 0 | 12 | 120 | 56 | 164 | 1.09e-70 | 209 |
| Msa0047990 | AT4G16520.2 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.10e-70 | 206 |
| Msa0047990 | AT4G16520.1 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.10e-70 | 206 |
| Msa0047990 | AT4G04620.3 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 8.73e-69 | 202 |
| Msa0047990 | AT4G04620.2 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 8.73e-69 | 202 |
| Msa0047990 | AT4G04620.1 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 8.73e-69 | 202 |
| Msa0047990 | AT3G60640.1 | 75.833 | 120 | 29 | 0 | 1 | 120 | 1 | 120 | 5.84e-67 | 198 |
| Msa0047990 | AT2G45170.2 | 78.070 | 114 | 25 | 0 | 4 | 117 | 5 | 118 | 8.12e-65 | 192 |
| Msa0047990 | AT2G45170.1 | 78.070 | 114 | 25 | 0 | 4 | 117 | 5 | 118 | 8.12e-65 | 192 |
| Msa0047990 | AT1G62040.2 | 84.043 | 94 | 15 | 0 | 1 | 94 | 1 | 94 | 7.56e-54 | 164 |
| Msa0047990 | AT4G16520.3 | 79.348 | 92 | 19 | 0 | 26 | 117 | 26 | 117 | 2.48e-50 | 156 |
| Msa0047990 | AT3G15580.1 | 56.637 | 113 | 49 | 0 | 5 | 117 | 3 | 115 | 1.27e-44 | 141 |
| Msa0047990 | AT3G06420.1 | 53.097 | 113 | 53 | 0 | 5 | 117 | 7 | 119 | 2.14e-41 | 133 |
Find 52 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATGGTCCCAAATGATTT+TGG | 0.151551 | 1_1:+81208533 | None:intergenic |
| TCTTCTCTTCTCAACTCTTT+TGG | 0.233898 | 1_1:-81211264 | Msa0047990:intron |
| GCTTTGCTGTGACAATTTAT+TGG | 0.241677 | 1_1:-81208686 | Msa0047990:three_prime_UTR |
| GGCTAAGAGTTCCTTCAAAT+TGG | 0.251624 | 1_1:-81211139 | Msa0047990:CDS |
| TGGCAATTGGGTAACGTATA+AGG | 0.274580 | 1_1:+81211373 | None:intergenic |
| TACAGCGGGGAGAACACTTT+TGG | 0.291853 | 1_1:-81208783 | Msa0047990:CDS |
| TTGTCTAATCCAAAATCATT+TGG | 0.336859 | 1_1:-81208542 | Msa0047990:three_prime_UTR |
| ATTGGGAAGGATTTGGCAAT+TGG | 0.362325 | 1_1:+81211360 | None:intergenic |
| CTTTGCTGTGACAATTTATT+GGG | 0.378455 | 1_1:-81208685 | Msa0047990:three_prime_UTR |
| AAACAAGATTGGGAAGGATT+TGG | 0.383012 | 1_1:+81211353 | None:intergenic |
| CAATTTGAATACAAACATAA+AGG | 0.390713 | 1_1:+81208605 | None:intergenic |
| TGTCTAATCCAAAATCATTT+GGG | 0.391909 | 1_1:-81208541 | Msa0047990:three_prime_UTR |
| AGGCTGAAGCTGCTCGCATA+AGG | 0.395777 | 1_1:-81210255 | Msa0047990:CDS |
| ATTGATTGCGGAAACAAGAT+TGG | 0.397853 | 1_1:+81211342 | None:intergenic |
| TTGGGAAGGATTTGGCAATT+GGG | 0.407738 | 1_1:+81211361 | None:intergenic |
| GGGTGTAGGTTATTGTTGAA+AGG | 0.421063 | 1_1:-81210120 | Msa0047990:intron |
| CATTGGACTTAAAATAATAA+TGG | 0.422225 | 1_1:+81208517 | None:intergenic |
| AACGTATAAGGCTAAACTTT+AGG | 0.456116 | 1_1:+81211385 | None:intergenic |
| CCCCGCTGTAAGTCATATAC+AGG | 0.458740 | 1_1:+81208796 | None:intergenic |
| AAGTAGTTGCAGATTAGATA+AGG | 0.465664 | 1_1:+81208636 | None:intergenic |
| TCCGCACCACATACACGAAC+TGG | 0.481973 | 1_1:+81209043 | None:intergenic |
| GGTGTAGGTTATTGTTGAAA+GGG | 0.488338 | 1_1:-81210119 | Msa0047990:intron |
| AAAATGAAGATGGCCTTCTC+GGG | 0.489019 | 1_1:+81209003 | None:intergenic |
| GAGGAAAACAAGGATGAAGA+TGG | 0.507080 | 1_1:-81208822 | Msa0047990:CDS |
| TATGATGTCTGCAATATATG+AGG | 0.514512 | 1_1:-81208841 | Msa0047990:CDS |
| TCCTGTATATGACTTACAGC+GGG | 0.516758 | 1_1:-81208797 | Msa0047990:CDS |
| TTGATTGCGGAAACAAGATT+GGG | 0.518727 | 1_1:+81211343 | None:intergenic |
| CAACGTACTGGAATTCTATC+GGG | 0.519536 | 1_1:+81210223 | None:intergenic |
| TGGCCTACAGTTAGATCAGC+AGG | 0.520566 | 1_1:+81209063 | None:intergenic |
| ACAACGTACTGGAATTCTAT+CGG | 0.532190 | 1_1:+81210222 | None:intergenic |
| AAATCTCTCTTGATTGATTG+CGG | 0.532864 | 1_1:+81211330 | None:intergenic |
| GGCTGAAGCTGCTCGCATAA+GGG | 0.538594 | 1_1:-81210254 | Msa0047990:CDS |
| CAGCATAATCATCATCATCA+TGG | 0.541919 | 1_1:-81211160 | Msa0047990:exon |
| TTATGATTCAGAGAGGAGAC+AGG | 0.542769 | 1_1:-81210275 | Msa0047990:intron |
| GTTCCTGCTGATCTAACTGT+AGG | 0.544817 | 1_1:-81209066 | Msa0047990:CDS |
| TAGAAGAGAAGAAAAGCAAA+GGG | 0.546434 | 1_1:+81211303 | None:intergenic |
| TCATATATATTACCAGTTGG+TGG | 0.578563 | 1_1:+81208964 | None:intergenic |
| TGTAGGCCAGTTCGTGTATG+TGG | 0.582982 | 1_1:-81209049 | Msa0047990:CDS |
| CTAGAAGAGAAGAAAAGCAA+AGG | 0.584884 | 1_1:+81211302 | None:intergenic |
| TTGCGGAAACAAGATTGGGA+AGG | 0.606700 | 1_1:+81211347 | None:intergenic |
| GCCAGTTCGTGTATGTGGTG+CGG | 0.607938 | 1_1:-81209044 | Msa0047990:CDS |
| AATCAAATTGAGTCCCGAGA+AGG | 0.616573 | 1_1:-81209016 | Msa0047990:CDS |
| AGATTAGATAAGGATTGTCA+TGG | 0.617712 | 1_1:+81208646 | None:intergenic |
| TGCAATATATGAGGAAAACA+AGG | 0.622289 | 1_1:-81208832 | Msa0047990:CDS |
| AAAGCATAACTATTTCACAT+AGG | 0.623046 | 1_1:+81208704 | None:intergenic |
| TAATGTGAAATATTCACAAG+GGG | 0.646228 | 1_1:-81208755 | Msa0047990:exon |
| TTCCTGTATATGACTTACAG+CGG | 0.658464 | 1_1:-81208798 | Msa0047990:CDS |
| GTTAATGTGAAATATTCACA+AGG | 0.676537 | 1_1:-81208757 | Msa0047990:exon |
| ATTCAAATTGCAAATAGACG+AGG | 0.677060 | 1_1:-81208592 | Msa0047990:three_prime_UTR |
| TTAATGTGAAATATTCACAA+GGG | 0.685269 | 1_1:-81208756 | Msa0047990:exon |
| GAGAAAAGAACGAACCAAGG+GGG | 0.734252 | 1_1:+81211112 | None:intergenic |
| CCTGTATATGACTTACAGCG+GGG | 0.753998 | 1_1:-81208796 | Msa0047990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACCTAAAAAAACAAATAT+TGG | + | chr1_1:81208853-81208872 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTTAGGTTATAT+TGG | - | chr1_1:81208856-81208875 | Msa0047990:intron | 15.0% |
| !!! | AATTTATCGATTTTATGTTT+TGG | - | chr1_1:81208886-81208905 | Msa0047990:intron | 15.0% |
| !!! | TGATTTGTAATTTGAAAAAT+TGG | - | chr1_1:81208971-81208990 | Msa0047990:intron | 15.0% |
| !! | GATTTGTAATTTGAAAAATT+GGG | - | chr1_1:81208972-81208991 | Msa0047990:intron | 15.0% |
| !! | TTCATTAAAGTTGAAAATTT+GGG | - | chr1_1:81209027-81209046 | Msa0047990:CDS | 15.0% |
| !!! | AAATATTTACACTTTTACTT+GGG | - | chr1_1:81210026-81210045 | Msa0047990:intron | 15.0% |
| !!! | TTGCCAATATTTGTTTTTTT+AGG | - | chr1_1:81208847-81208866 | Msa0047990:CDS | 20.0% |
| !!! | GATTTTATGTTTTGGTTATT+AGG | - | chr1_1:81208894-81208913 | Msa0047990:intron | 20.0% |
| !! | GTTCATTAAAGTTGAAAATT+TGG | - | chr1_1:81209026-81209045 | Msa0047990:CDS | 20.0% |
| !! | ACGTATCAAAATTACAAAAA+CGG | + | chr1_1:81209281-81209300 | None:intergenic | 20.0% |
| !!! | TCAGTTCTTTTATATTAATC+TGG | - | chr1_1:81209772-81209791 | Msa0047990:intron | 20.0% |
| !!! | TATTAATCTGGTTAATCTTT+TGG | - | chr1_1:81209784-81209803 | Msa0047990:intron | 20.0% |
| !!! | ATTAATCTGGTTAATCTTTT+GGG | - | chr1_1:81209785-81209804 | Msa0047990:intron | 20.0% |
| !!! | CAAATATTTACACTTTTACT+TGG | - | chr1_1:81210025-81210044 | Msa0047990:intron | 20.0% |
| !!! | TGATTTTTCATATATGTTTG+TGG | - | chr1_1:81210121-81210140 | Msa0047990:intron | 20.0% |
| !! | AGTTAATTGGTGAATAAAAA+AGG | - | chr1_1:81210328-81210347 | Msa0047990:intron | 20.0% |
| !! | GTTAATTGGTGAATAAAAAA+GGG | - | chr1_1:81210329-81210348 | Msa0047990:intron | 20.0% |
| !! | TGTAGATCAAATATATTTGT+GGG | + | chr1_1:81210417-81210436 | None:intergenic | 20.0% |
| !! | TTGTAGATCAAATATATTTG+TGG | + | chr1_1:81210418-81210437 | None:intergenic | 20.0% |
| !! | TAATCATATATATTACCAGT+TGG | + | chr1_1:81210967-81210986 | None:intergenic | 20.0% |
| !! | ATTATTATTGTAGTTGTTGA+TGG | - | chr1_1:81210983-81211002 | Msa0047990:intron | 20.0% |
| !! | TTAATGTGAAATATTCACAA+GGG | - | chr1_1:81211169-81211188 | Msa0047990:intron | 20.0% |
| !! | CAATTTGAATACAAACATAA+AGG | + | chr1_1:81211323-81211342 | None:intergenic | 20.0% |
| ! | AATTAGAGAATGAAAGAGAT+TGG | + | chr1_1:81208690-81208709 | None:intergenic | 25.0% |
| ! | AATTCACATAACGATCATAA+TGG | + | chr1_1:81209004-81209023 | None:intergenic | 25.0% |
| ! | AACAACAAAAGAAGAAGAAA+TGG | - | chr1_1:81209098-81209117 | Msa0047990:intron | 25.0% |
| !! | AGAAGAAGAAATGGTTATTT+TGG | - | chr1_1:81209107-81209126 | Msa0047990:intron | 25.0% |
| ! | TTGTAATCCATATACAATCA+AGG | + | chr1_1:81209158-81209177 | None:intergenic | 25.0% |
| ! | AGAATAAAAAAGACACCTTT+AGG | - | chr1_1:81209242-81209261 | Msa0047990:intron | 25.0% |
| ! | TACAAAAACGGTTACAAAAA+CGG | + | chr1_1:81209269-81209288 | None:intergenic | 25.0% |
| !! | AGATGAAGTTTTGCAAAATT+TGG | - | chr1_1:81209364-81209383 | Msa0047990:intron | 25.0% |
| !!! | ATTGTTGTGCTGTTTTTTTT+TGG | - | chr1_1:81209392-81209411 | Msa0047990:intron | 25.0% |
| ! | TAGTTGTGAACAATGAATTA+AGG | - | chr1_1:81209428-81209447 | Msa0047990:intron | 25.0% |
| !!! | AGTTTGTTGTTTTAGAACAT+TGG | - | chr1_1:81209540-81209559 | Msa0047990:intron | 25.0% |
| ! | AGTTTGTAACTTAGTAGTAA+TGG | + | chr1_1:81209603-81209622 | None:intergenic | 25.0% |
| ! | ATAAACTTTATGATTCAGAG+AGG | - | chr1_1:81209643-81209662 | Msa0047990:intron | 25.0% |
| !!! | AACTTTTTCTTATCGATATC+TGG | + | chr1_1:81209849-81209868 | None:intergenic | 25.0% |
| !! | TCTTATTTCATTTGGTTGAA+TGG | - | chr1_1:81210183-81210202 | Msa0047990:intron | 25.0% |
| ! | TATTTGATCTACAACAAAAG+AGG | - | chr1_1:81210424-81210443 | Msa0047990:intron | 25.0% |
| ! | AAATCTGTGTTTCACAAATA+TGG | - | chr1_1:81210492-81210511 | Msa0047990:intron | 25.0% |
| ! | GAAGTTCAAAACATAACAAA+GGG | + | chr1_1:81210539-81210558 | None:intergenic | 25.0% |
| ! | TGAAGTTCAAAACATAACAA+AGG | + | chr1_1:81210540-81210559 | None:intergenic | 25.0% |
| !!! | TATCGTTTTTTGTTGATTGT+AGG | - | chr1_1:81210830-81210849 | Msa0047990:intron | 25.0% |
| ! | GTTAATGTGAAATATTCACA+AGG | - | chr1_1:81211168-81211187 | Msa0047990:intron | 25.0% |
| ! | TAATGTGAAATATTCACAAG+GGG | - | chr1_1:81211170-81211189 | Msa0047990:intron | 25.0% |
| ! | AAAGCATAACTATTTCACAT+AGG | + | chr1_1:81211224-81211243 | None:intergenic | 25.0% |
| ! | TTGTCTAATCCAAAATCATT+TGG | - | chr1_1:81211383-81211402 | Msa0047990:five_prime_UTR | 25.0% |
| ! | TGTCTAATCCAAAATCATTT+GGG | - | chr1_1:81211384-81211403 | Msa0047990:five_prime_UTR | 25.0% |
| AACGTATAAGGCTAAACTTT+AGG | + | chr1_1:81208543-81208562 | None:intergenic | 30.0% | |
| AAATCTCTCTTGATTGATTG+CGG | + | chr1_1:81208598-81208617 | None:intergenic | 30.0% | |
| TAGAAGAGAAGAAAAGCAAA+GGG | + | chr1_1:81208625-81208644 | None:intergenic | 30.0% | |
| !! | TTTGCTTTTCTTCTCTTCTA+GGG | - | chr1_1:81208625-81208644 | Msa0047990:three_prime_UTR | 30.0% |
| ATTATGCTGCAACAGAATTA+GGG | + | chr1_1:81208754-81208773 | None:intergenic | 30.0% | |
| ! | GGATTTGAAATTCATGTGAT+CGG | - | chr1_1:81208915-81208934 | Msa0047990:intron | 30.0% |
| !! | ATTTTTGTTTGCCCAAGAAA+AGG | - | chr1_1:81209075-81209094 | Msa0047990:CDS | 30.0% |
| !!! | CTTTTGTTGTTCCTTTTCTT+GGG | + | chr1_1:81209089-81209108 | None:intergenic | 30.0% |
| !!! | TCTTTTGTTGTTCCTTTTCT+TGG | + | chr1_1:81209090-81209109 | None:intergenic | 30.0% |
| GGACTAAACTAAATAACGTA+AGG | - | chr1_1:81209203-81209222 | Msa0047990:intron | 30.0% | |
| TTAATAAACGAACAACGTAC+TGG | + | chr1_1:81209717-81209736 | None:intergenic | 30.0% | |
| !! | CATTTCTATTTGTTGTGAAG+AGG | - | chr1_1:81209872-81209891 | Msa0047990:intron | 30.0% |
| !! | CTTTCTGCATTAATTTGTTG+TGG | - | chr1_1:81209965-81209984 | Msa0047990:intron | 30.0% |
| ! | TAATGAAAGTATGACCACTA+TGG | + | chr1_1:81210063-81210082 | None:intergenic | 30.0% |
| !!! | AGAGACTTTTTCATATTCGT+TGG | + | chr1_1:81210305-81210324 | None:intergenic | 30.0% |
| AAAAGTCTCTCACAGTTAAT+TGG | - | chr1_1:81210315-81210334 | Msa0047990:intron | 30.0% | |
| !!! | CTACAACAAAAGAGGTATTT+TGG | - | chr1_1:81210432-81210451 | Msa0047990:intron | 30.0% |
| !!! | CAAAAGAGGTATTTTGGTTT+AGG | - | chr1_1:81210438-81210457 | Msa0047990:intron | 30.0% |
| !!! | TTTGTCCTCCAACAATTTTT+TGG | - | chr1_1:81210578-81210597 | Msa0047990:intron | 30.0% |
| !!! | TTGTCCTCCAACAATTTTTT+GGG | - | chr1_1:81210579-81210598 | Msa0047990:intron | 30.0% |
| CAACTAACCCAAAAAATTGT+TGG | + | chr1_1:81210589-81210608 | None:intergenic | 30.0% | |
| !! | TTACTTAGTTCTAGCAACAT+TGG | - | chr1_1:81210627-81210646 | Msa0047990:intron | 30.0% |
| AAACCACTTCTCCTTTAATT+GGG | + | chr1_1:81210697-81210716 | None:intergenic | 30.0% | |
| AAAACCACTTCTCCTTTAAT+TGG | + | chr1_1:81210698-81210717 | None:intergenic | 30.0% | |
| ATGAAAATATACCACATGCA+TGG | + | chr1_1:81210796-81210815 | None:intergenic | 30.0% | |
| !! | TTTTGTTGATTGTAGGTATC+TGG | - | chr1_1:81210837-81210856 | Msa0047990:intron | 30.0% |
| GTTCTTCACAAAAATGAAGA+TGG | + | chr1_1:81210935-81210954 | None:intergenic | 30.0% | |
| TCATATATATTACCAGTTGG+TGG | + | chr1_1:81210964-81210983 | None:intergenic | 30.0% | |
| CATTAGTATCATTTCCTTCA+TGG | - | chr1_1:81211006-81211025 | Msa0047990:intron | 30.0% | |
| TATGATGTCTGCAATATATG+AGG | - | chr1_1:81211084-81211103 | Msa0047990:intron | 30.0% | |
| TGCAATATATGAGGAAAACA+AGG | - | chr1_1:81211093-81211112 | Msa0047990:intron | 30.0% | |
| ! | CTTTGCTGTGACAATTTATT+GGG | - | chr1_1:81211240-81211259 | Msa0047990:intron | 30.0% |
| AGATTAGATAAGGATTGTCA+TGG | + | chr1_1:81211282-81211301 | None:intergenic | 30.0% | |
| AAGTAGTTGCAGATTAGATA+AGG | + | chr1_1:81211292-81211311 | None:intergenic | 30.0% | |
| ATTCAAATTGCAAATAGACG+AGG | - | chr1_1:81211333-81211352 | Msa0047990:five_prime_UTR | 30.0% | |
| ! | ATAATGGTCCCAAATGATTT+TGG | + | chr1_1:81211395-81211414 | None:intergenic | 30.0% |
| AAACAAGATTGGGAAGGATT+TGG | + | chr1_1:81208575-81208594 | None:intergenic | 35.0% | |
| TTGATTGCGGAAACAAGATT+GGG | + | chr1_1:81208585-81208604 | None:intergenic | 35.0% | |
| ATTGATTGCGGAAACAAGAT+TGG | + | chr1_1:81208586-81208605 | None:intergenic | 35.0% | |
| CTAGAAGAGAAGAAAAGCAA+AGG | + | chr1_1:81208626-81208645 | None:intergenic | 35.0% | |
| !! | CTTTGCTTTTCTTCTCTTCT+AGG | - | chr1_1:81208624-81208643 | Msa0047990:three_prime_UTR | 35.0% |
| ! | TCTTCTCTTCTCAACTCTTT+TGG | - | chr1_1:81208661-81208680 | Msa0047990:three_prime_UTR | 35.0% |
| GATTATGCTGCAACAGAATT+AGG | + | chr1_1:81208755-81208774 | None:intergenic | 35.0% | |
| CAGCATAATCATCATCATCA+TGG | - | chr1_1:81208765-81208784 | Msa0047990:exon | 35.0% | |
| AAGAGAAAAGAACGAACCAA+GGG | + | chr1_1:81208818-81208837 | None:intergenic | 35.0% | |
| TAAGAGAAAAGAACGAACCA+AGG | + | chr1_1:81208819-81208838 | None:intergenic | 35.0% | |
| TTACAGGCCTTGATTGTATA+TGG | - | chr1_1:81209148-81209167 | Msa0047990:intron | 35.0% | |
| ACTAATGAAAGACACATTCG+AGG | - | chr1_1:81209182-81209201 | Msa0047990:intron | 35.0% | |
| !!! | TAGAACATTGGTTTTCTCTC+TGG | - | chr1_1:81209552-81209571 | Msa0047990:intron | 35.0% |
| !!! | AGAACATTGGTTTTCTCTCT+GGG | - | chr1_1:81209553-81209572 | Msa0047990:intron | 35.0% |
| ACAACGTACTGGAATTCTAT+CGG | + | chr1_1:81209706-81209725 | None:intergenic | 35.0% | |
| GGTGTAGGTTATTGTTGAAA+GGG | - | chr1_1:81209806-81209825 | Msa0047990:intron | 35.0% | |
| TGCAAGGTTAGGAACAATTA+AGG | + | chr1_1:81210153-81210172 | None:intergenic | 35.0% | |
| CCAAATGAAATAAGATGCCA+AGG | + | chr1_1:81210178-81210197 | None:intergenic | 35.0% | |
| ! | CCTTGGCATCTTATTTCATT+TGG | - | chr1_1:81210175-81210194 | Msa0047990:intron | 35.0% |
| CTAACCCAAAAAATTGTTGG+AGG | + | chr1_1:81210586-81210605 | None:intergenic | 35.0% | |
| CTGTAGAAAAGTAGCAAAAG+TGG | - | chr1_1:81210736-81210755 | Msa0047990:intron | 35.0% | |
| AAAAATGAAGATGGCCTTCT+CGG | + | chr1_1:81210926-81210945 | None:intergenic | 35.0% | |
| ! | AAGAACATTTTACCACCAAC+TGG | - | chr1_1:81210949-81210968 | Msa0047990:intron | 35.0% |
| TCACAAGTTAATCACCATGA+AGG | + | chr1_1:81211023-81211042 | None:intergenic | 35.0% | |
| TTCCTGTATATGACTTACAG+CGG | - | chr1_1:81211127-81211146 | Msa0047990:CDS | 35.0% | |
| ! | GCTTTGCTGTGACAATTTAT+TGG | - | chr1_1:81211239-81211258 | Msa0047990:intron | 35.0% |
| TGGCAATTGGGTAACGTATA+AGG | + | chr1_1:81208555-81208574 | None:intergenic | 40.0% | |
| TTGGGAAGGATTTGGCAATT+GGG | + | chr1_1:81208567-81208586 | None:intergenic | 40.0% | |
| ATTGGGAAGGATTTGGCAAT+TGG | + | chr1_1:81208568-81208587 | None:intergenic | 40.0% | |
| GGCTAAGAGTTCCTTCAAAT+TGG | - | chr1_1:81208786-81208805 | Msa0047990:CDS | 40.0% | |
| AGAGAAAAGAACGAACCAAG+GGG | + | chr1_1:81208817-81208836 | None:intergenic | 40.0% | |
| CCTGTAACAAACACAGGTTT+AGG | + | chr1_1:81209135-81209154 | None:intergenic | 40.0% | |
| ! | CCTAAACCTGTGTTTGTTAC+AGG | - | chr1_1:81209132-81209151 | Msa0047990:intron | 40.0% |
| CGTAAGGAACTACACATCAT+CGG | - | chr1_1:81209219-81209238 | Msa0047990:intron | 40.0% | |
| GGTTACAAAAACGGTCCTAA+AGG | + | chr1_1:81209260-81209279 | None:intergenic | 40.0% | |
| !!! | GCTTTTTCAGTTCTGCTAGT+TGG | - | chr1_1:81209486-81209505 | Msa0047990:intron | 40.0% |
| !!! | GAACATTGGTTTTCTCTCTG+GGG | - | chr1_1:81209554-81209573 | Msa0047990:intron | 40.0% |
| TTATGATTCAGAGAGGAGAC+AGG | - | chr1_1:81209650-81209669 | Msa0047990:intron | 40.0% | |
| CAACGTACTGGAATTCTATC+GGG | + | chr1_1:81209705-81209724 | None:intergenic | 40.0% | |
| CATTACATATGTACGCGCAA+AGG | + | chr1_1:81209746-81209765 | None:intergenic | 40.0% | |
| !! | CTGGTTAATCTTTTGGGTGT+AGG | - | chr1_1:81209791-81209810 | Msa0047990:intron | 40.0% |
| GGGTGTAGGTTATTGTTGAA+AGG | - | chr1_1:81209805-81209824 | Msa0047990:intron | 40.0% | |
| TGGTTCACCTTGTTGAACAT+GGG | - | chr1_1:81209985-81210004 | Msa0047990:intron | 40.0% | |
| TGAACAACCCATGTTCAACA+AGG | + | chr1_1:81209995-81210014 | None:intergenic | 40.0% | |
| ! | CATGGGTTGTTCATTGAAGT+TGG | - | chr1_1:81210002-81210021 | Msa0047990:intron | 40.0% |
| ATAAGATGCCAAGGTTTGCA+AGG | + | chr1_1:81210169-81210188 | None:intergenic | 40.0% | |
| !! | CTTAGTTCTAGCAACATTGG+AGG | - | chr1_1:81210630-81210649 | Msa0047990:intron | 40.0% |
| TGTGAGTGAGATGAAGACAA+GGG | + | chr1_1:81210668-81210687 | None:intergenic | 40.0% | |
| CACTTCTCCTTTAATTGGGA+GGG | + | chr1_1:81210693-81210712 | None:intergenic | 40.0% | |
| AAAAGTAGCAAAAGTGGCTG+TGG | - | chr1_1:81210742-81210761 | Msa0047990:intron | 40.0% | |
| AATCAAATTGAGTCCCGAGA+AGG | - | chr1_1:81210909-81210928 | Msa0047990:intron | 40.0% | |
| AAAATGAAGATGGCCTTCTC+GGG | + | chr1_1:81210925-81210944 | None:intergenic | 40.0% | |
| TCATAGCAGCTGTATGAAGA+GGG | + | chr1_1:81211069-81211088 | None:intergenic | 40.0% | |
| ATCATAGCAGCTGTATGAAG+AGG | + | chr1_1:81211070-81211089 | None:intergenic | 40.0% | |
| GAGGAAAACAAGGATGAAGA+TGG | - | chr1_1:81211103-81211122 | Msa0047990:intron | 40.0% | |
| TCCTGTATATGACTTACAGC+GGG | - | chr1_1:81211128-81211147 | Msa0047990:CDS | 40.0% | |
| TTGCGGAAACAAGATTGGGA+AGG | + | chr1_1:81208581-81208600 | None:intergenic | 45.0% | |
| !! | AAGGGGGTGTTCCAATTTGA+AGG | + | chr1_1:81208800-81208819 | None:intergenic | 45.0% |
| TTCAAATTGGAACACCCCCT+TGG | - | chr1_1:81208799-81208818 | Msa0047990:CDS | 45.0% | |
| GAGAAAAGAACGAACCAAGG+GGG | + | chr1_1:81208816-81208835 | None:intergenic | 45.0% | |
| TCAAGGCCTGTAACAAACAC+AGG | + | chr1_1:81209141-81209160 | None:intergenic | 45.0% | |
| ! | CATTTTCATCCTCCAACGTG+AGG | + | chr1_1:81209325-81209344 | None:intergenic | 45.0% |
| GTGGTTCACCTTGTTGAACA+TGG | - | chr1_1:81209984-81210003 | Msa0047990:intron | 45.0% | |
| GTTCCTAACCTTGCAAACCT+TGG | - | chr1_1:81210158-81210177 | Msa0047990:intron | 45.0% | |
| ATGCCAAGGTTTGCAAGGTT+AGG | + | chr1_1:81210164-81210183 | None:intergenic | 45.0% | |
| GTTCTAGCAACATTGGAGGT+TGG | - | chr1_1:81210634-81210653 | Msa0047990:intron | 45.0% | |
| GTGTGAGTGAGATGAAGACA+AGG | + | chr1_1:81210669-81210688 | None:intergenic | 45.0% | |
| TCACACACCCTCCCAATTAA+AGG | - | chr1_1:81210683-81210702 | Msa0047990:intron | 45.0% | |
| CCACTTCTCCTTTAATTGGG+AGG | + | chr1_1:81210694-81210713 | None:intergenic | 45.0% | |
| CCTCCCAATTAAAGGAGAAG+TGG | - | chr1_1:81210691-81210710 | Msa0047990:intron | 45.0% | |
| GTTCCTGCTGATCTAACTGT+AGG | - | chr1_1:81210859-81210878 | Msa0047990:intron | 45.0% | |
| CCTGTATATGACTTACAGCG+GGG | - | chr1_1:81211129-81211148 | Msa0047990:CDS | 45.0% | |
| GATATCGCAGTCCATGCATG+TGG | - | chr1_1:81210782-81210801 | Msa0047990:intron | 50.0% | |
| TGGCCTACAGTTAGATCAGC+AGG | + | chr1_1:81210865-81210884 | None:intergenic | 50.0% | |
| TGTAGGCCAGTTCGTGTATG+TGG | - | chr1_1:81210876-81210895 | Msa0047990:intron | 50.0% | |
| CCCCGCTGTAAGTCATATAC+AGG | + | chr1_1:81211132-81211151 | None:intergenic | 50.0% | |
| ! | TACAGCGGGGAGAACACTTT+TGG | - | chr1_1:81211142-81211161 | Msa0047990:CDS | 50.0% |
| ! | ACAGCGGGGAGAACACTTTT+GGG | - | chr1_1:81211143-81211162 | Msa0047990:CDS | 50.0% |
| ATTGTGACAGCGCCTCACGT+TGG | - | chr1_1:81209310-81209329 | Msa0047990:intron | 55.0% | |
| AGGCTGAAGCTGCTCGCATA+AGG | - | chr1_1:81209670-81209689 | Msa0047990:intron | 55.0% | |
| GGCTGAAGCTGCTCGCATAA+GGG | - | chr1_1:81209671-81209690 | Msa0047990:intron | 55.0% | |
| GGGCTAGACTAGAGCCATAG+TGG | - | chr1_1:81210046-81210065 | Msa0047990:intron | 55.0% | |
| GCCAGTTCGTGTATGTGGTG+CGG | - | chr1_1:81210881-81210900 | Msa0047990:intron | 55.0% | |
| TCCGCACCACATACACGAAC+TGG | + | chr1_1:81210885-81210904 | None:intergenic | 55.0% | |
| GTGACAGCGCCTCACGTTGG+AGG | - | chr1_1:81209313-81209332 | Msa0047990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 81208525 | 81211422 | 81208525 | ID=Msa0047990;Name=Msa0047990 |
| chr1_1 | mRNA | 81208525 | 81211422 | 81208525 | ID=Msa0047990-mRNA-1;Parent=Msa0047990;Name=Msa0047990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=174|1|1|1|0.8|0.66|6|245|120 |
| chr1_1 | exon | 81208525 | 81208867 | 81208525 | ID=Msa0047990-mRNA-1:exon:28033;Parent=Msa0047990-mRNA-1 |
| chr1_1 | exon | 81208977 | 81209095 | 81208977 | ID=Msa0047990-mRNA-1:exon:28032;Parent=Msa0047990-mRNA-1 |
| chr1_1 | exon | 81210082 | 81210134 | 81210082 | ID=Msa0047990-mRNA-1:exon:28031;Parent=Msa0047990-mRNA-1 |
| chr1_1 | exon | 81210231 | 81210286 | 81210231 | ID=Msa0047990-mRNA-1:exon:28030;Parent=Msa0047990-mRNA-1 |
| chr1_1 | exon | 81211127 | 81211179 | 81211127 | ID=Msa0047990-mRNA-1:exon:28029;Parent=Msa0047990-mRNA-1 |
| chr1_1 | exon | 81211265 | 81211422 | 81211265 | ID=Msa0047990-mRNA-1:exon:28028;Parent=Msa0047990-mRNA-1 |
| chr1_1 | five_prime_UTR | 81211265 | 81211422 | 81211265 | ID=Msa0047990-mRNA-1:five_prime_utr;Parent=Msa0047990-mRNA-1 |
| chr1_1 | five_prime_UTR | 81211164 | 81211179 | 81211164 | ID=Msa0047990-mRNA-1:five_prime_utr;Parent=Msa0047990-mRNA-1 |
| chr1_1 | CDS | 81211127 | 81211163 | 81211127 | ID=Msa0047990-mRNA-1:cds;Parent=Msa0047990-mRNA-1 |
| chr1_1 | CDS | 81210231 | 81210286 | 81210231 | ID=Msa0047990-mRNA-1:cds;Parent=Msa0047990-mRNA-1 |
| chr1_1 | CDS | 81210082 | 81210134 | 81210082 | ID=Msa0047990-mRNA-1:cds;Parent=Msa0047990-mRNA-1 |
| chr1_1 | CDS | 81208977 | 81209095 | 81208977 | ID=Msa0047990-mRNA-1:cds;Parent=Msa0047990-mRNA-1 |
| chr1_1 | CDS | 81208770 | 81208867 | 81208770 | ID=Msa0047990-mRNA-1:cds;Parent=Msa0047990-mRNA-1 |
| chr1_1 | three_prime_UTR | 81208525 | 81208769 | 81208525 | ID=Msa0047990-mRNA-1:three_prime_utr;Parent=Msa0047990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
