AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1257170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257170 MtrunA17_Chr4g0055931 99.387 326 2 0 1 326 1 326 0.0 669
Msa1257170 MtrunA17_Chr2g0331031 51.744 344 139 11 1 323 1 338 2.52e-97 291
Msa1257170 MtrunA17_Chr5g0415191 48.768 203 65 5 1 183 3 186 1.98e-48 164
Msa1257170 MtrunA17_Chr6g0488471 47.568 185 75 4 1 173 1 175 7.88e-46 157
Msa1257170 MtrunA17_Chr8g0389241 48.889 180 70 6 3 167 4 176 3.00e-42 147
Msa1257170 MtrunA17_Chr4g0059701 54.902 153 58 5 15 162 5 151 2.36e-36 132
Msa1257170 MtrunA17_Chr1g0210471 52.800 125 43 2 49 173 93 201 2.14e-35 128
Msa1257170 MtrunA17_Chr3g0135671 41.622 185 94 4 1 180 3 178 2.96e-34 125
Msa1257170 MtrunA17_Chr4g0062741 58.654 104 36 1 89 192 132 228 1.68e-33 125
Msa1257170 MtrunA17_Chr3g0104071 60.000 100 38 1 71 168 121 220 2.93e-32 122
Msa1257170 MtrunA17_Chr1g0162081 47.727 132 57 2 37 168 76 195 1.51e-31 120
Msa1257170 MtrunA17_Chr5g0429521 73.239 71 19 0 89 159 126 196 4.19e-31 119
Msa1257170 MtrunA17_Chr7g0241761 66.667 81 27 0 87 167 132 212 4.77e-31 119
Msa1257170 MtrunA17_Chr3g0092621 67.647 68 22 0 95 162 84 151 4.77e-28 107
Msa1257170 MtrunA17_Chr5g0436501 64.198 81 27 1 90 168 120 200 7.48e-28 109
Msa1257170 MtrunA17_Chr5g0409841 36.111 144 86 3 47 184 42 185 6.05e-23 95.1
Msa1257170 MtrunA17_Chr6g0452791 47.368 95 42 1 96 190 81 167 1.69e-20 87.0
Msa1257170 MtrunA17_Chr5g0440731 40.678 118 58 4 47 158 60 171 5.61e-20 88.6
Msa1257170 MtrunA17_Chr5g0440741 41.379 116 55 5 47 158 60 166 1.33e-19 87.4
Msa1257170 MtrunA17_Chr5g0409831 47.368 76 39 1 68 142 49 124 3.32e-18 82.0
Msa1257170 MtrunA17_Chr1g0192061 36.719 128 65 5 43 157 1 125 2.73e-15 73.2
Msa1257170 MtrunA17_Chr8g0365011 41.237 97 37 3 92 168 83 179 3.09e-15 74.7
Msa1257170 MtrunA17_Chr8g0364731 58.621 58 22 1 104 159 10 67 6.94e-15 72.0
Msa1257170 MtrunA17_Chr5g0432921 39.583 96 43 4 76 157 83 177 2.45e-12 65.5
Msa1257170 MtrunA17_Chr3g0113121 35.088 114 62 3 97 201 97 207 2.20e-11 62.8
Msa1257170 MtrunA17_Chr8g0370121 28.244 131 89 2 92 220 97 224 4.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257170 AT5G47390.1 63.277 354 95 10 1 321 1 352 1.58e-135 389
Msa1257170 AT3G16350.1 45.288 382 131 15 1 318 1 368 4.74e-71 226
Msa1257170 AT5G61620.1 50.267 187 71 5 1 173 8 186 1.52e-49 168
Msa1257170 AT1G70000.1 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1257170 AT1G70000.2 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1257170 AT5G56840.1 44.751 181 57 6 1 161 1 158 2.82e-39 139
Msa1257170 AT2G38090.1 71.795 78 22 0 90 167 136 213 2.51e-33 125
Msa1257170 AT1G74840.2 52.667 150 55 5 21 162 22 163 4.71e-33 122
Msa1257170 AT1G19000.2 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1257170 AT1G19000.1 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1257170 AT1G74840.1 52.667 150 55 5 21 162 22 163 7.76e-33 122
Msa1257170 AT5G08520.1 52.336 107 51 0 62 168 85 191 8.76e-33 123
Msa1257170 AT1G49010.1 68.293 82 24 1 89 168 128 209 1.15e-32 123
Msa1257170 AT5G04760.1 62.195 82 31 0 83 164 87 168 1.23e-31 118
Msa1257170 AT5G58900.1 72.857 70 19 0 90 159 136 205 5.34e-31 118
Msa1257170 AT3G11280.2 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1257170 AT3G11280.1 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1257170 AT5G01200.1 63.636 77 28 0 89 165 140 216 3.38e-28 110
Msa1257170 AT5G05790.2 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1257170 AT5G05790.1 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1257170 AT3G10580.2 48.039 102 51 1 68 169 68 167 8.12e-24 98.6
Msa1257170 AT3G10580.1 48.039 102 51 1 68 169 68 167 1.29e-23 98.6
Msa1257170 AT4G09450.1 48.515 101 46 2 75 169 68 168 6.13e-22 92.0
Msa1257170 AT5G23650.1 51.948 77 37 0 83 159 108 184 1.53e-20 90.9
Msa1257170 AT3G10590.1 48.276 87 41 3 79 162 92 177 3.53e-18 82.0

Find 144 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCATGTGTTTCTTTCTT+AGG 0.230059 8_2:+57701415 None:intergenic
TTCATCAAATATACTTGGTT+TGG 0.266321 8_2:-57701172 Msa1257170:three_prime_UTR
TTTATCCACGACAAGATAAA+TGG 0.288105 8_2:-57704355 Msa1257170:five_prime_UTR
GTTTGTGTTTGTTTGCTTGT+AGG 0.301972 8_2:-57701103 Msa1257170:three_prime_UTR
ATCGACATTGATTGGGCTCT+TGG 0.306199 8_2:+57701369 None:intergenic
GATCCGGAAAAGTGCTAGTA+TGG 0.310152 8_2:-57704028 Msa1257170:CDS
GGTTTATTTGTATTTATGTT+TGG 0.320649 8_2:+57704257 None:intergenic
CATTGATGTCGGGCTTTAAT+GGG 0.332518 8_2:+57701536 None:intergenic
GCATTGATGTCGGGCTTTAA+TGG 0.338606 8_2:+57701535 None:intergenic
GTTGTGTTGTGTTGTGTTGT+TGG 0.344442 8_2:-57704327 Msa1257170:five_prime_UTR
AACAGCTTCACACCACGATT+TGG 0.346847 8_2:+57704072 None:intergenic
TCATCAAATATACTTGGTTT+GGG 0.349945 8_2:-57701171 Msa1257170:three_prime_UTR
ATTGGGCTCTTGGAATGTAC+TGG 0.350663 8_2:+57701379 None:intergenic
ATTTGTATTTATGTTTGGTT+TGG 0.350949 8_2:+57704262 None:intergenic
ACGAGTTCATCGACATTGAT+TGG 0.357821 8_2:+57701361 None:intergenic
CTCCCTGCATTTGTTACACT+GGG 0.361159 8_2:+57700913 None:intergenic
CACTATAGCGGGTCCGGGTC+TGG 0.363851 8_2:-57703994 Msa1257170:CDS
GGTGAAACTATTGGTGATAC+TGG 0.369014 8_2:-57701316 Msa1257170:CDS
TTTCCTCTTCCATATTGGTC+TGG 0.369873 8_2:-57701457 Msa1257170:CDS
TGTGTTTCTTTCTTAGGAGC+TGG 0.373891 8_2:+57701421 None:intergenic
CCTTGATATAACATAGTTCC+TGG 0.379937 8_2:+57702526 None:intergenic
CCTCCCTGCATTTGTTACAC+TGG 0.381440 8_2:+57700912 None:intergenic
ATGTTTGGTTTGGTCTCCCT+CGG 0.397830 8_2:+57704272 None:intergenic
CTTAGCCACTATAGCGGGTC+CGG 0.398806 8_2:-57704000 Msa1257170:CDS
ACAAACTAGGTTAACCATTC+TGG 0.399924 8_2:+57701120 None:intergenic
TTCAATTTCATTTCATGCCT+CGG 0.409007 8_2:-57704214 Msa1257170:five_prime_UTR
GATCATGGTGCTGATGGTTA+TGG 0.418054 8_2:-57703922 Msa1257170:CDS
TAACCATCAGCACCATGATC+AGG 0.421312 8_2:+57703925 None:intergenic
TAGAAGTTGAGTATAGTGAT+TGG 0.425963 8_2:+57704480 None:intergenic
CTCTTGGAATGTACTGGGGT+TGG 0.426876 8_2:+57701385 None:intergenic
AACGAGAGAGGTGAATTATC+AGG 0.427162 8_2:+57704167 None:intergenic
GCTTGTAGGCAGTAGTATCT+AGG 0.428846 8_2:-57701089 Msa1257170:three_prime_UTR
TTCATACAACTCCAGCTTGT+GGG 0.433206 8_2:-57701237 Msa1257170:CDS
TTGGGCTCTTGGAATGTACT+GGG 0.435041 8_2:+57701380 None:intergenic
GGAAGAGGAAAAGGGAAGAA+TGG 0.436557 8_2:+57701469 None:intergenic
AGTAGTATCTAGGATTTACT+TGG 0.439017 8_2:-57701079 Msa1257170:three_prime_UTR
GACCAATATGGAAGAGGAAA+AGG 0.441108 8_2:+57701460 None:intergenic
TGCGGTACCATTGAAGTATC+AGG 0.442348 8_2:+57701691 None:intergenic
CTGAGTTTAGGTGAAACTAT+TGG 0.449826 8_2:-57701325 Msa1257170:CDS
ACGGGTCATGATTTCTGAAC+CGG 0.452893 8_2:+57704140 None:intergenic
GCAGGCACCTGATACTTCAA+TGG 0.455907 8_2:-57701698 Msa1257170:intron
GACGCTTGTGCATTGATGTC+GGG 0.457053 8_2:+57701526 None:intergenic
ATGCCTCGGATCCTGTGATT+CGG 0.462408 8_2:-57704200 Msa1257170:five_prime_UTR
GGACTGTATCCAGACCAATA+TGG 0.463662 8_2:+57701448 None:intergenic
AATCGTGGTGTGAAGCTGTT+TGG 0.464828 8_2:-57704069 Msa1257170:CDS
CGAGTTCATCGACATTGATT+GGG 0.465415 8_2:+57701362 None:intergenic
CATCTGCAACAATATCAAAC+AGG 0.473584 8_2:+57702423 None:intergenic
TGTAATTCATCAAATATACT+TGG 0.476466 8_2:-57701177 Msa1257170:three_prime_UTR
TGCACAAGCGTCGGCTTACC+CGG 0.477679 8_2:-57701515 Msa1257170:CDS
TGAAAAGCCGACTGTCTAGA+AGG 0.477844 8_2:+57701256 None:intergenic
ACAAGCTGGGCAAAGGTGAT+TGG 0.481462 8_2:-57702559 Msa1257170:CDS
GTTCTCATTGCAGCCACAAT+GGG 0.482827 8_2:-57704113 Msa1257170:CDS
TCATCGAGTGGAGGAGGAGC+AGG 0.484781 8_2:+57701613 None:intergenic
TTCACCTCTCTCGTTCGATC+CGG 0.485313 8_2:-57704159 Msa1257170:five_prime_UTR
CTATGTTCCTCCTCAGTCCA+TGG 0.485937 8_2:+57702602 None:intergenic
GAGGCATGAAATGAAATTGA+AGG 0.488386 8_2:+57704216 None:intergenic
TTTATGACCGTGGATTGGTT+CGG 0.489533 8_2:+57704434 None:intergenic
GGCATGTCAAAACTGAGTTT+AGG 0.490022 8_2:-57701337 Msa1257170:CDS
TAAGATTAACCGATGGGATC+CGG 0.490318 8_2:-57704044 Msa1257170:CDS
TCTTTCTTAGGAGCTGGCTC+AGG 0.491218 8_2:+57701427 None:intergenic
AAGAATGGAGAATAATATGC+TGG 0.499540 8_2:+57701484 None:intergenic
GTTTGAGTTTGTAGAATCCA+TGG 0.503591 8_2:+57701579 None:intergenic
CGACGCTTGTGCATTGATGT+CGG 0.504753 8_2:+57701525 None:intergenic
GTGATTGGCGTGGAATTGCC+AGG 0.506530 8_2:-57702544 Msa1257170:CDS
CAGACCCGGACCCGCTATAG+TGG 0.508114 8_2:+57703995 None:intergenic
CTTAAATAGGAAGCACAACT+TGG 0.509265 8_2:+57700964 None:intergenic
CACAGAACAGTCCCACAAGC+TGG 0.510753 8_2:+57701226 None:intergenic
TTACTTGGATTGAACAAGCT+GGG 0.512315 8_2:-57702572 Msa1257170:CDS
CATTCTTCATCGAGTGGAGG+AGG 0.516097 8_2:+57701607 None:intergenic
ACCAATATGGAAGAGGAAAA+GGG 0.517539 8_2:+57701461 None:intergenic
GTTTATTTATGACCGTGGAT+TGG 0.521412 8_2:+57704429 None:intergenic
CCAGGAACTATGTTATATCA+AGG 0.521846 8_2:-57702526 Msa1257170:CDS
AGTGGAGGAGGAGCAGGCAA+AGG 0.525729 8_2:+57701619 None:intergenic
GGAGATTGTTGACGTGGCAG+AGG 0.526371 8_2:+57704455 None:intergenic
TTTACTTGGATTGAACAAGC+TGG 0.526943 8_2:-57702573 Msa1257170:CDS
TCAAATACTCCTGGTTCACC+TGG 0.529002 8_2:-57703955 Msa1257170:CDS
TAAGAAAGAAACACATGAAG+TGG 0.531198 8_2:-57701413 Msa1257170:CDS
CAAGCAAACAAACACAAACT+AGG 0.532269 8_2:+57701107 None:intergenic
TAATATGCTGGATATACTAC+CGG 0.533057 8_2:+57701496 None:intergenic
CGATGAAGAATGTGAGTCCA+TGG 0.537872 8_2:-57701596 Msa1257170:CDS
GTGGAGGAGGAGCAGGCAAA+GGG 0.545011 8_2:+57701620 None:intergenic
GCTTTGAAGATCCGAATCAC+AGG 0.547364 8_2:+57704189 None:intergenic
TGTTTGGTTTGGTCTCCCTC+GGG 0.548440 8_2:+57704273 None:intergenic
AACCCTGATCATGGTGCTGA+TGG 0.553194 8_2:-57703928 Msa1257170:CDS
GTAGTATCTAGGATTTACTT+GGG 0.553645 8_2:-57701078 Msa1257170:three_prime_UTR
GTCGGGCTTTAATGGGGCAG+AGG 0.557337 8_2:+57701543 None:intergenic
TGCAACAATATCAAACAGGC+TGG 0.557484 8_2:+57702427 None:intergenic
TGTTCTCATTGCAGCCACAA+TGG 0.558526 8_2:-57704114 Msa1257170:CDS
GGTAATCTTAGCCACTATAG+CGG 0.560908 8_2:-57704006 Msa1257170:CDS
TCTCGTAAACTACTTGAAGA+AGG 0.563354 8_2:-57701280 Msa1257170:CDS
GATTCTACAAACTCAAACGA+TGG 0.564664 8_2:-57701574 Msa1257170:CDS
TATCCAGACCAATATGGAAG+AGG 0.565662 8_2:+57701454 None:intergenic
TTAGCCACTATAGCGGGTCC+GGG 0.567360 8_2:-57703999 Msa1257170:CDS
TTTCATACAACTCCAGCTTG+TGG 0.570031 8_2:-57701238 Msa1257170:CDS
AGTTTACGAGACAGAGTCGA+GGG 0.572728 8_2:+57701292 None:intergenic
TCAGGCAAAGCAATGTGTCT+AGG 0.575738 8_2:-57702463 Msa1257170:CDS
AATACCGGGTCAAATACTCC+TGG 0.575888 8_2:-57703964 Msa1257170:CDS
TTGGAGTAAGATTAACCGAT+GGG 0.581339 8_2:-57704050 Msa1257170:CDS
ACTATCCATTTATCTTGTCG+TGG 0.585024 8_2:+57704350 None:intergenic
TGCTGATGGTTATGGTTCTG+AGG 0.588306 8_2:-57703914 Msa1257170:CDS
GGATTGAACAAGCTGGGCAA+AGG 0.588333 8_2:-57702566 Msa1257170:CDS
AACCATCAGCACCATGATCA+GGG 0.589650 8_2:+57703926 None:intergenic
TGGTTCGGAGATTGTTGACG+TGG 0.590211 8_2:+57704449 None:intergenic
CCTGGTGAAAACCCTGATCA+TGG 0.590290 8_2:-57703937 Msa1257170:CDS
TGATCGTTTATTTATGACCG+TGG 0.591106 8_2:+57704424 None:intergenic
GTAATCTTAGCCACTATAGC+GGG 0.591144 8_2:-57704005 Msa1257170:CDS
CGGGAAGTAGAAGAAGAACC+AGG 0.591204 8_2:+57703883 None:intergenic
ACTAGGTTAACCATTCTGGA+AGG 0.591528 8_2:+57701124 None:intergenic
CTCTGCAGCAGCAAAACCCG+AGG 0.598531 8_2:-57704289 Msa1257170:five_prime_UTR
ATCAATGTCGATGAACTCGT+TGG 0.598709 8_2:-57701358 Msa1257170:CDS
GACTCACATTCTTCATCGAG+TGG 0.599669 8_2:+57701601 None:intergenic
AGAAGGTCCTTCTAGACAGT+CGG 0.599702 8_2:-57701263 Msa1257170:CDS
CAACTACAAACTGAAACAGA+AGG 0.603118 8_2:-57701649 Msa1257170:CDS
ATTGATGTCGGGCTTTAATG+GGG 0.617600 8_2:+57701537 None:intergenic
ATCCGGAAAAGTGCTAGTAT+GGG 0.617740 8_2:-57704027 Msa1257170:CDS
TTCTTGAGTTGTGCCCATTG+TGG 0.619382 8_2:+57704100 None:intergenic
ATCTTGTCGTGGATAAAGAG+AGG 0.620375 8_2:+57704361 None:intergenic
ATCAAGGACACCTACTCAAG+TGG 0.620432 8_2:-57702510 Msa1257170:CDS
TGAACCGGATCGAACGAGAG+AGG 0.621078 8_2:+57704155 None:intergenic
GCTGCAATGAGAACAACGAC+GGG 0.624049 8_2:+57704122 None:intergenic
CGACATCAATGCACAAGCGT+CGG 0.624911 8_2:-57701524 Msa1257170:CDS
CTGGGCAAAGGTGATTGGCG+TGG 0.626265 8_2:-57702554 Msa1257170:CDS
GATCCGAATCACAGGATCCG+AGG 0.626517 8_2:+57704197 None:intergenic
CTAGGTTAACCATTCTGGAA+GGG 0.628075 8_2:+57701125 None:intergenic
TTTGGAGTAAGATTAACCGA+TGG 0.628079 8_2:-57704051 Msa1257170:CDS
ATGTGTCTAGGCGGAAGAGA+CGG 0.634804 8_2:-57702451 Msa1257170:CDS
AATATGCTGGATATACTACC+GGG 0.636844 8_2:+57701497 None:intergenic
TGGGCTCTTGGAATGTACTG+GGG 0.642523 8_2:+57701381 None:intergenic
GCGTGACTGGCCACTTGAGT+AGG 0.645270 8_2:+57702500 None:intergenic
GGCTGCAATGAGAACAACGA+CGG 0.647502 8_2:+57704121 None:intergenic
TTAGCTGACAAGAAGTCTTG+CGG 0.653600 8_2:+57701673 None:intergenic
TGCAGGCACTCCATGGACTG+AGG 0.655185 8_2:-57702612 Msa1257170:intron
GGTATTCAAAAGTCCAGACC+CGG 0.655952 8_2:+57703981 None:intergenic
ACAATCTCCGAACCAATCCA+CGG 0.660058 8_2:-57704441 Msa1257170:five_prime_UTR
TGAGCATTATTATCATGATG+TGG 0.662122 8_2:-57701205 Msa1257170:three_prime_UTR
TCAAGAACTTGTCCAAATCG+TGG 0.664250 8_2:-57704084 Msa1257170:CDS
TAGTTTACGAGACAGAGTCG+AGG 0.668337 8_2:+57701291 None:intergenic
TCACATTCTTCATCGAGTGG+AGG 0.671641 8_2:+57701604 None:intergenic
TCTGCAGCAGCAAAACCCGA+GGG 0.677080 8_2:-57704288 Msa1257170:five_prime_UTR
AGGCACTCCATGGACTGAGG+AGG 0.685831 8_2:-57702609 Msa1257170:CDS
GGCAAAGCAATGTGTCTAGG+CGG 0.687559 8_2:-57702460 Msa1257170:CDS
TGAACCAGGAGTATTTGACC+CGG 0.708436 8_2:+57703960 None:intergenic
GTTTACGAGACAGAGTCGAG+GGG 0.738520 8_2:+57701293 None:intergenic
GGTAAAGATAAGATGCTACG+CGG 0.788761 8_2:+57704382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATATTTTATTTGC+AGG - chr8_2:57702783-57702802 Msa1257170:intron 10.0%
!!! GAAAAAGTATTAAAAAAAAA+CGG + chr8_2:57703463-57703482 None:intergenic 10.0%
!!! TTATATTTTTGATTTTTGGT+TGG - chr8_2:57701731-57701750 Msa1257170:intron 15.0%
!! ATTATTATGTTTGTTTAACT+TGG - chr8_2:57701938-57701957 Msa1257170:intron 15.0%
!!! AAATATCATTTAAAGCAAAA+AGG + chr8_2:57702544-57702563 None:intergenic 15.0%
!! TAAAAAAAAAAACACACATT+TGG + chr8_2:57703131-57703150 None:intergenic 15.0%
!! ATTTGTATTTATGTTTGGTT+TGG + chr8_2:57701153-57701172 None:intergenic 20.0%
!! GGTTTATTTGTATTTATGTT+TGG + chr8_2:57701158-57701177 None:intergenic 20.0%
!!! AAATGAAATTGAAGGTTTTA+AGG + chr8_2:57701191-57701210 None:intergenic 20.0%
!!! ATCTGAAATATATTGAATGT+TGG - chr8_2:57701846-57701865 Msa1257170:intron 20.0%
!! ATCTATGATAGATTAAATAC+CGG - chr8_2:57702091-57702110 Msa1257170:intron 20.0%
!!! AATATGCTCTTTTAACTATA+TGG - chr8_2:57702182-57702201 Msa1257170:intron 20.0%
!!! TTTGCTTTAAATGATATTTG+TGG - chr8_2:57702545-57702564 Msa1257170:CDS 20.0%
!!! TAATGTTAGGTATACTTTTT+TGG - chr8_2:57702619-57702638 Msa1257170:intron 20.0%
!!! AATGTTAGGTATACTTTTTT+GGG - chr8_2:57702620-57702639 Msa1257170:intron 20.0%
!! ATATAGAATTTGGAAATAAG+GGG + chr8_2:57703023-57703042 None:intergenic 20.0%
!! CATATAGAATTTGGAAATAA+GGG + chr8_2:57703024-57703043 None:intergenic 20.0%
!!! CATTTTAAGCATATAGAATT+TGG + chr8_2:57703033-57703052 None:intergenic 20.0%
!! TTATATGCAACATAATGTAA+AGG + chr8_2:57703061-57703080 None:intergenic 20.0%
!! ATTTGGATAATCTTATCAAA+TGG + chr8_2:57703114-57703133 None:intergenic 20.0%
!! TTTGAATTCAATTATATAGC+TGG - chr8_2:57703402-57703421 Msa1257170:intron 20.0%
!! TAAAACATTGGTATTTAGTT+TGG - chr8_2:57703565-57703584 Msa1257170:intron 20.0%
!!! TATTTTTGTTTTGATTTTGC+AGG - chr8_2:57703696-57703715 Msa1257170:intron 20.0%
!! TGTAATTCATCAAATATACT+TGG - chr8_2:57704235-57704254 Msa1257170:five_prime_UTR 20.0%
!!! AGGTTTTAAGGTTTTGTTTT+TGG + chr8_2:57701179-57701198 None:intergenic 25.0%
! CTAGATGAATTCAAGTATAT+TGG - chr8_2:57701650-57701669 Msa1257170:CDS 25.0%
! TTGGATAAATTATGTGATCT+TGG - chr8_2:57701669-57701688 Msa1257170:CDS 25.0%
! TAAATTATGTGATCTTGGTT+TGG - chr8_2:57701674-57701693 Msa1257170:CDS 25.0%
!!! GTCTTTTTTGAGAGAATTAT+TGG - chr8_2:57701815-57701834 Msa1257170:intron 25.0%
! GTGAACTATATGCATATTAA+TGG + chr8_2:57702005-57702024 None:intergenic 25.0%
! TCTATGATAGATTAAATACC+GGG - chr8_2:57702092-57702111 Msa1257170:intron 25.0%
!! TGCACAAAGTATTAGATTTA+GGG + chr8_2:57702462-57702481 None:intergenic 25.0%
!! TTGCACAAAGTATTAGATTT+AGG + chr8_2:57702463-57702482 None:intergenic 25.0%
! TTCAAATAGTCACTAATGTT+AGG - chr8_2:57702606-57702625 Msa1257170:CDS 25.0%
!!! ATGTTAGGTATACTTTTTTG+GGG - chr8_2:57702621-57702640 Msa1257170:intron 25.0%
!! TTAAATGAGTCAAAGGTTTT+AGG + chr8_2:57702648-57702667 None:intergenic 25.0%
!!! GAACATAGAATGTTTTTACT+TGG - chr8_2:57702825-57702844 Msa1257170:intron 25.0%
! GCATATAGAATTTGGAAATA+AGG + chr8_2:57703025-57703044 None:intergenic 25.0%
!! ATGATATTGTTTGACCTTTT+AGG - chr8_2:57703151-57703170 Msa1257170:intron 25.0%
!! TGATATTGTTTGACCTTTTA+GGG - chr8_2:57703152-57703171 Msa1257170:intron 25.0%
!! ATTTTCAAAGAATCCCTAAA+AGG + chr8_2:57703168-57703187 None:intergenic 25.0%
! AACATTATTAATACACAGAG+AGG + chr8_2:57703273-57703292 None:intergenic 25.0%
! TCTGTGTATTAATAATGTTC+TGG - chr8_2:57703274-57703293 Msa1257170:intron 25.0%
! GTTAGATATTGATAGAAACA+TGG - chr8_2:57703296-57703315 Msa1257170:intron 25.0%
! ATCAAATTAGTGAGAAATAC+GGG + chr8_2:57703530-57703549 None:intergenic 25.0%
! CATCAAATTAGTGAGAAATA+CGG + chr8_2:57703531-57703550 None:intergenic 25.0%
! ATTTCTCACTAATTTGATGT+CGG - chr8_2:57703532-57703551 Msa1257170:intron 25.0%
!! TTCTGAACCTTCTAATTTTT+CGG - chr8_2:57703664-57703683 Msa1257170:intron 25.0%
! TTCATCAAATATACTTGGTT+TGG - chr8_2:57704240-57704259 Msa1257170:five_prime_UTR 25.0%
! TCATCAAATATACTTGGTTT+GGG - chr8_2:57704241-57704260 Msa1257170:five_prime_UTR 25.0%
! AGGGCAAGTAAAAATTATTA+AGG + chr8_2:57704271-57704290 None:intergenic 25.0%
!! TTTCAACTTTTCATTTCTCA+AGG - chr8_2:57704391-57704410 Msa1257170:five_prime_UTR 25.0%
!! CTTTTTGACAACACTTAAAT+AGG + chr8_2:57704464-57704483 None:intergenic 25.0%
TAGAAGTTGAGTATAGTGAT+TGG + chr8_2:57700935-57700954 None:intergenic 30.0%
TTTATCCACGACAAGATAAA+TGG - chr8_2:57701057-57701076 Msa1257170:three_prime_UTR 30.0%
TTCAATTTCATTTCATGCCT+CGG - chr8_2:57701198-57701217 Msa1257170:three_prime_UTR 30.0%
!!! ACAAACCCTTTTTTCTTTCA+CGG + chr8_2:57701552-57701571 None:intergenic 30.0%
TTTGCTTGCATGTGAATTAT+TGG - chr8_2:57701600-57701619 Msa1257170:CDS 30.0%
!!! TTTTTGGTTGGTGTAATTGT+AGG - chr8_2:57701743-57701762 Msa1257170:intron 30.0%
! TTGAATGTTGGTCTAAGAAA+TGG - chr8_2:57701858-57701877 Msa1257170:intron 30.0%
!!! AACATTGTTTTTGAACCACA+TGG + chr8_2:57701902-57701921 None:intergenic 30.0%
TGTATTCTAGTGCCTAATTA+TGG - chr8_2:57701969-57701988 Msa1257170:intron 30.0%
GTATTCTAGTGCCTAATTAT+GGG - chr8_2:57701970-57701989 Msa1257170:intron 30.0%
TATTCTAGTGCCTAATTATG+GGG - chr8_2:57701971-57701990 Msa1257170:intron 30.0%
!! GCTCTTTTAACTATATGGTT+CGG - chr8_2:57702187-57702206 Msa1257170:intron 30.0%
ATCATGACTGAAACAATCTT+TGG - chr8_2:57702261-57702280 Msa1257170:intron 30.0%
! GCACAAAGTATTAGATTTAG+GGG + chr8_2:57702461-57702480 None:intergenic 30.0%
! GTCTATCTAAAGTTTGATCT+AGG + chr8_2:57702522-57702541 None:intergenic 30.0%
!!! TGTTAGGTATACTTTTTTGG+GGG - chr8_2:57702622-57702641 Msa1257170:intron 30.0%
AACCTTTGACTCATTTAACT+AGG - chr8_2:57702650-57702669 Msa1257170:intron 30.0%
AACCTAGTTAAATGAGTCAA+AGG + chr8_2:57702655-57702674 None:intergenic 30.0%
TGACTCATTTAACTAGGTTT+CGG - chr8_2:57702656-57702675 Msa1257170:intron 30.0%
ACGCTCAAAAATATTTCATC+AGG - chr8_2:57702931-57702950 Msa1257170:intron 30.0%
! CTTATCAAATGGTAATGAAC+AGG + chr8_2:57703103-57703122 None:intergenic 30.0%
! AAATGGACAATTTTCCCAAA+TGG + chr8_2:57703226-57703245 None:intergenic 30.0%
!!! TTTGGCAATGTTTTAATAGC+CGG - chr8_2:57703329-57703348 Msa1257170:intron 30.0%
AATTGAATTCAAACCAACCA+GGG + chr8_2:57703395-57703414 None:intergenic 30.0%
TAATTGAATTCAAACCAACC+AGG + chr8_2:57703396-57703415 None:intergenic 30.0%
AATTCAATTATATAGCTGGC+TGG - chr8_2:57703406-57703425 Msa1257170:intron 30.0%
TTTCTCACTAATTTGATGTC+GGG - chr8_2:57703533-57703552 Msa1257170:intron 30.0%
!!! GGGACTGATTTTTAAAACAT+TGG - chr8_2:57703553-57703572 Msa1257170:intron 30.0%
!! AACATTGGTATTTAGTTTGG+AGG - chr8_2:57703568-57703587 Msa1257170:intron 30.0%
! AAACATTGCATTTTCTGATG+TGG - chr8_2:57703593-57703612 Msa1257170:intron 30.0%
GAAAAATTAGAAGGTTCAGA+AGG + chr8_2:57703665-57703684 None:intergenic 30.0%
! TCTGAACCTTCTAATTTTTC+GGG - chr8_2:57703665-57703684 Msa1257170:intron 30.0%
AGAAATCCCGAAAAATTAGA+AGG + chr8_2:57703674-57703693 None:intergenic 30.0%
TAATATGCTGGATATACTAC+CGG + chr8_2:57703919-57703938 None:intergenic 30.0%
AAGAATGGAGAATAATATGC+TGG + chr8_2:57703931-57703950 None:intergenic 30.0%
ACTTCATGTGTTTCTTTCTT+AGG + chr8_2:57704000-57704019 None:intergenic 30.0%
TAAGAAAGAAACACATGAAG+TGG - chr8_2:57703999-57704018 Msa1257170:CDS 30.0%
TGAGCATTATTATCATGATG+TGG - chr8_2:57704207-57704226 Msa1257170:five_prime_UTR 30.0%
! AGTAGTATCTAGGATTTACT+TGG - chr8_2:57704333-57704352 Msa1257170:five_prime_UTR 30.0%
! GTAGTATCTAGGATTTACTT+GGG - chr8_2:57704334-57704353 Msa1257170:five_prime_UTR 30.0%
GTTTATTTATGACCGTGGAT+TGG + chr8_2:57700986-57701005 None:intergenic 35.0%
TGATCGTTTATTTATGACCG+TGG + chr8_2:57700991-57701010 None:intergenic 35.0%
ACTATCCATTTATCTTGTCG+TGG + chr8_2:57701065-57701084 None:intergenic 35.0%
GAGGCATGAAATGAAATTGA+AGG + chr8_2:57701199-57701218 None:intergenic 35.0%
! TTTGGAGTAAGATTAACCGA+TGG - chr8_2:57701361-57701380 Msa1257170:CDS 35.0%
TTGGAGTAAGATTAACCGAT+GGG - chr8_2:57701362-57701381 Msa1257170:CDS 35.0%
TACTTCCCGTGAAAGAAAAA+AGG - chr8_2:57701543-57701562 Msa1257170:CDS 35.0%
ACTTCCCGTGAAAGAAAAAA+GGG - chr8_2:57701544-57701563 Msa1257170:CDS 35.0%
!!! CAAACCCTTTTTTCTTTCAC+GGG + chr8_2:57701551-57701570 None:intergenic 35.0%
AATTCACATGCAAGCAAAAG+AGG + chr8_2:57701598-57701617 None:intergenic 35.0%
!! TATGTGATCTTGGTTTGGAT+TGG - chr8_2:57701679-57701698 Msa1257170:CDS 35.0%
TAGGAGTAACTAGACAAGAA+AGG - chr8_2:57701762-57701781 Msa1257170:intron 35.0%
! TGTTGGTCTAAGAAATGGAT+AGG - chr8_2:57701863-57701882 Msa1257170:intron 35.0%
AATGGATAGGTATAAGTCTC+AGG - chr8_2:57701876-57701895 Msa1257170:intron 35.0%
ATTCTAGTGCCTAATTATGG+GGG - chr8_2:57701972-57701991 Msa1257170:intron 35.0%
CTGTTTCAGCTATCTAAACT+AGG - chr8_2:57702024-57702043 Msa1257170:intron 35.0%
ACCTGGACAAAAATAAAGCT+TGG + chr8_2:57702287-57702306 None:intergenic 35.0%
! TTTTCTGTGTCTTGAACCTT+CGG + chr8_2:57702338-57702357 None:intergenic 35.0%
GGTTCAAGACACAGAAAAAA+TGG - chr8_2:57702340-57702359 Msa1257170:intron 35.0%
ATTACACACAACCCTGAATA+GGG - chr8_2:57702396-57702415 Msa1257170:intron 35.0%
AAGAAATGTGACCCTATTCA+GGG + chr8_2:57702410-57702429 None:intergenic 35.0%
TAAGAAATGTGACCCTATTC+AGG + chr8_2:57702411-57702430 None:intergenic 35.0%
ACATTTCTTAAACGACGACA+TGG - chr8_2:57702421-57702440 Msa1257170:CDS 35.0%
! CAAAGTATTAGATTTAGGGG+AGG + chr8_2:57702458-57702477 None:intergenic 35.0%
CAAATTCAGCTAAACAGTAC+TGG + chr8_2:57702683-57702702 None:intergenic 35.0%
ACATTACAGTCAGCTTCAAT+GGG - chr8_2:57702720-57702739 Msa1257170:intron 35.0%
TTTACTTGGATTGAACAAGC+TGG - chr8_2:57702839-57702858 Msa1257170:intron 35.0%
TTACTTGGATTGAACAAGCT+GGG - chr8_2:57702840-57702859 Msa1257170:intron 35.0%
CCTTGATATAACATAGTTCC+TGG + chr8_2:57702889-57702908 None:intergenic 35.0%
CCAGGAACTATGTTATATCA+AGG - chr8_2:57702886-57702905 Msa1257170:intron 35.0%
!! GAAATATTTTTGAGCGTGAC+TGG + chr8_2:57702928-57702947 None:intergenic 35.0%
CATCTGCAACAATATCAAAC+AGG + chr8_2:57702992-57703011 None:intergenic 35.0%
! ATGGTAATGAACAGGTTATG+TGG + chr8_2:57703095-57703114 None:intergenic 35.0%
! TGTCCATTTCCTGGATATTT+TGG - chr8_2:57703237-57703256 Msa1257170:intron 35.0%
CATCCAAAATATCCAGGAAA+TGG + chr8_2:57703243-57703262 None:intergenic 35.0%
CATCAACATCCAAAATATCC+AGG + chr8_2:57703249-57703268 None:intergenic 35.0%
TATTGATAGAAACATGGCTC+TGG - chr8_2:57703302-57703321 Msa1257170:intron 35.0%
ATTGATAGAAACATGGCTCT+GGG - chr8_2:57703303-57703322 Msa1257170:intron 35.0%
TTAGAAGGTTCAGAAGGAAA+AGG + chr8_2:57703659-57703678 None:intergenic 35.0%
CAACTACAAACTGAAACAGA+AGG - chr8_2:57703763-57703782 Msa1257170:intron 35.0%
! GTTTGAGTTTGTAGAATCCA+TGG + chr8_2:57703836-57703855 None:intergenic 35.0%
GATTCTACAAACTCAAACGA+TGG - chr8_2:57703838-57703857 Msa1257170:intron 35.0%
AATATGCTGGATATACTACC+GGG + chr8_2:57703918-57703937 None:intergenic 35.0%
ACCAATATGGAAGAGGAAAA+GGG + chr8_2:57703954-57703973 None:intergenic 35.0%
CTGAGTTTAGGTGAAACTAT+TGG - chr8_2:57704087-57704106 Msa1257170:CDS 35.0%
TCTCGTAAACTACTTGAAGA+AGG - chr8_2:57704132-57704151 Msa1257170:exon 35.0%
ACAAACTAGGTTAACCATTC+TGG + chr8_2:57704295-57704314 None:intergenic 35.0%
CAAGCAAACAAACACAAACT+AGG + chr8_2:57704308-57704327 None:intergenic 35.0%
GTTTGTGTTTGTTTGCTTGT+AGG - chr8_2:57704309-57704328 Msa1257170:five_prime_UTR 35.0%
! CTTAAATAGGAAGCACAACT+TGG + chr8_2:57704451-57704470 None:intergenic 35.0%
!! TTTATGACCGTGGATTGGTT+CGG + chr8_2:57700981-57701000 None:intergenic 40.0%
GGTAAAGATAAGATGCTACG+CGG + chr8_2:57701033-57701052 None:intergenic 40.0%
ATCTTGTCGTGGATAAAGAG+AGG + chr8_2:57701054-57701073 None:intergenic 40.0%
GTTGTGTTGTGTTGTGTTGT+TGG - chr8_2:57701085-57701104 Msa1257170:three_prime_UTR 40.0%
AACGAGAGAGGTGAATTATC+AGG + chr8_2:57701248-57701267 None:intergenic 40.0%
TCAAGAACTTGTCCAAATCG+TGG - chr8_2:57701328-57701347 Msa1257170:CDS 40.0%
TAAGATTAACCGATGGGATC+CGG - chr8_2:57701368-57701387 Msa1257170:CDS 40.0%
!! ATCCGGAAAAGTGCTAGTAT+GGG - chr8_2:57701385-57701404 Msa1257170:CDS 40.0%
! TACCCATACTAGCACTTTTC+CGG + chr8_2:57701390-57701409 None:intergenic 40.0%
GGTAATCTTAGCCACTATAG+CGG - chr8_2:57701406-57701425 Msa1257170:CDS 40.0%
GTAATCTTAGCCACTATAGC+GGG - chr8_2:57701407-57701426 Msa1257170:CDS 40.0%
ATAGATTAAATACCGGGCTG+TGG - chr8_2:57702098-57702117 Msa1257170:intron 40.0%
CAATGCTTGCAGATCATTAG+GGG + chr8_2:57702158-57702177 None:intergenic 40.0%
CCAATGCTTGCAGATCATTA+GGG + chr8_2:57702159-57702178 None:intergenic 40.0%
TTCAGTCATGATTCGAACTC+TGG + chr8_2:57702253-57702272 None:intergenic 40.0%
!!! GCCAAGCTTTATTTTTGTCC+AGG - chr8_2:57702283-57702302 Msa1257170:intron 40.0%
TTTCTGTGTCTTGAACCTTC+GGG + chr8_2:57702337-57702356 None:intergenic 40.0%
GATTACACACAACCCTGAAT+AGG - chr8_2:57702395-57702414 Msa1257170:intron 40.0%
CACATTACAGTCAGCTTCAA+TGG - chr8_2:57702719-57702738 Msa1257170:intron 40.0%
CATTACAGTCAGCTTCAATG+GGG - chr8_2:57702721-57702740 Msa1257170:intron 40.0%
!! TTTTATTTGCAGGCACTCCA+TGG - chr8_2:57702793-57702812 Msa1257170:intron 40.0%
TGCAACAATATCAAACAGGC+TGG + chr8_2:57702988-57703007 None:intergenic 40.0%
! TCACGACACTGTTTTCCATT+TGG - chr8_2:57703208-57703227 Msa1257170:intron 40.0%
! CACGACACTGTTTTCCATTT+GGG - chr8_2:57703209-57703228 Msa1257170:intron 40.0%
TGGGAAAATTGTCCATTTCC+TGG - chr8_2:57703228-57703247 Msa1257170:intron 40.0%
! TTGATAGAAACATGGCTCTG+GGG - chr8_2:57703304-57703323 Msa1257170:intron 40.0%
TTAGTGAGAAATACGGGTCA+TGG + chr8_2:57703524-57703543 None:intergenic 40.0%
TTAGCTGACAAGAAGTCTTG+CGG + chr8_2:57703742-57703761 None:intergenic 40.0%
! ATTGATGTCGGGCTTTAATG+GGG + chr8_2:57703878-57703897 None:intergenic 40.0%
! CATTGATGTCGGGCTTTAAT+GGG + chr8_2:57703879-57703898 None:intergenic 40.0%
! TCCCTTTTCCTCTTCCATAT+TGG - chr8_2:57703950-57703969 Msa1257170:CDS 40.0%
GACCAATATGGAAGAGGAAA+AGG + chr8_2:57703955-57703974 None:intergenic 40.0%
TTTCCTCTTCCATATTGGTC+TGG - chr8_2:57703955-57703974 Msa1257170:CDS 40.0%
TATCCAGACCAATATGGAAG+AGG + chr8_2:57703961-57703980 None:intergenic 40.0%
TGTGTTTCTTTCTTAGGAGC+TGG + chr8_2:57703994-57704013 None:intergenic 40.0%
! CGAGTTCATCGACATTGATT+GGG + chr8_2:57704053-57704072 None:intergenic 40.0%
ACGAGTTCATCGACATTGAT+TGG + chr8_2:57704054-57704073 None:intergenic 40.0%
ATCAATGTCGATGAACTCGT+TGG - chr8_2:57704054-57704073 Msa1257170:CDS 40.0%
GGCATGTCAAAACTGAGTTT+AGG - chr8_2:57704075-57704094 Msa1257170:CDS 40.0%
! GGTGAAACTATTGGTGATAC+TGG - chr8_2:57704096-57704115 Msa1257170:CDS 40.0%
TTTCATACAACTCCAGCTTG+TGG - chr8_2:57704174-57704193 Msa1257170:five_prime_UTR 40.0%
TTCATACAACTCCAGCTTGT+GGG - chr8_2:57704175-57704194 Msa1257170:five_prime_UTR 40.0%
! TTTTACTTGCCCTTCCAGAA+TGG - chr8_2:57704278-57704297 Msa1257170:five_prime_UTR 40.0%
! CTAGGTTAACCATTCTGGAA+GGG + chr8_2:57704290-57704309 None:intergenic 40.0%
ACTAGGTTAACCATTCTGGA+AGG + chr8_2:57704291-57704310 None:intergenic 40.0%
ACAATCTCCGAACCAATCCA+CGG - chr8_2:57700971-57700990 Msa1257170:three_prime_UTR 45.0%
!! ATGTTTGGTTTGGTCTCCCT+CGG + chr8_2:57701143-57701162 None:intergenic 45.0%
!! GCTTTGAAGATCCGAATCAC+AGG + chr8_2:57701226-57701245 None:intergenic 45.0%
ACGGGTCATGATTTCTGAAC+CGG + chr8_2:57701275-57701294 None:intergenic 45.0%
TGTTCTCATTGCAGCCACAA+TGG - chr8_2:57701298-57701317 Msa1257170:CDS 45.0%
GTTCTCATTGCAGCCACAAT+GGG - chr8_2:57701299-57701318 Msa1257170:CDS 45.0%
! TTCTTGAGTTGTGCCCATTG+TGG + chr8_2:57701315-57701334 None:intergenic 45.0%
AACAGCTTCACACCACGATT+TGG + chr8_2:57701343-57701362 None:intergenic 45.0%
AATCGTGGTGTGAAGCTGTT+TGG - chr8_2:57701343-57701362 Msa1257170:CDS 45.0%
!! GATCCGGAAAAGTGCTAGTA+TGG - chr8_2:57701384-57701403 Msa1257170:CDS 45.0%
GGTATTCAAAAGTCCAGACC+CGG + chr8_2:57701434-57701453 None:intergenic 45.0%
! GGGTCTGGACTTTTGAATAC+CGG - chr8_2:57701433-57701452 Msa1257170:CDS 45.0%
! GGTCTGGACTTTTGAATACC+GGG - chr8_2:57701434-57701453 Msa1257170:CDS 45.0%
AATACCGGGTCAAATACTCC+TGG - chr8_2:57701448-57701467 Msa1257170:CDS 45.0%
!! TGAACCAGGAGTATTTGACC+CGG + chr8_2:57701455-57701474 None:intergenic 45.0%
TCAAATACTCCTGGTTCACC+TGG - chr8_2:57701457-57701476 Msa1257170:CDS 45.0%
AACCATCAGCACCATGATCA+GGG + chr8_2:57701489-57701508 None:intergenic 45.0%
TAACCATCAGCACCATGATC+AGG + chr8_2:57701490-57701509 None:intergenic 45.0%
!! GATCATGGTGCTGATGGTTA+TGG - chr8_2:57701490-57701509 Msa1257170:CDS 45.0%
! TGCTGATGGTTATGGTTCTG+AGG - chr8_2:57701498-57701517 Msa1257170:CDS 45.0%
!!! GGTTCTGAGGATTTTGTTCC+TGG - chr8_2:57701511-57701530 Msa1257170:CDS 45.0%
CCCTAATGATCTGCAAGCAT+TGG - chr8_2:57702156-57702175 Msa1257170:intron 45.0%
GCCAATGCTTGCAGATCATT+AGG + chr8_2:57702160-57702179 None:intergenic 45.0%
! ACTATATGGTTCGGCTCAAG+TGG - chr8_2:57702196-57702215 Msa1257170:intron 45.0%
! TTTTTGTCCAGGTCGAACTC+TGG - chr8_2:57702294-57702313 Msa1257170:intron 45.0%
TGTCTTGAACCTTCGGGAAA+GGG + chr8_2:57702331-57702350 None:intergenic 45.0%
TACTCACTCTTGGGAAGGAT+GGG + chr8_2:57702496-57702515 None:intergenic 45.0%
ATCCTTCCCAAGAGTGAGTA+GGG - chr8_2:57702496-57702515 Msa1257170:CDS 45.0%
GTCAGCTTCAATGGGGATTA+CGG - chr8_2:57702728-57702747 Msa1257170:intron 45.0%
ATCAAGGACACCTACTCAAG+TGG - chr8_2:57702902-57702921 Msa1257170:intron 45.0%
TCAGGCAAAGCAATGTGTCT+AGG - chr8_2:57702949-57702968 Msa1257170:intron 45.0%
!! AAACATGGCTCTGGGGTATT+TGG - chr8_2:57703311-57703330 Msa1257170:intron 45.0%
AAACCAACCAGGGAACTAGT+TGG + chr8_2:57703385-57703404 None:intergenic 45.0%
AAAAACGGTTGAACCAGCCA+TGG + chr8_2:57703448-57703467 None:intergenic 45.0%
CAGAAGGAAAAGGAAAAGCG+AGG + chr8_2:57703649-57703668 None:intergenic 45.0%
! TGCGGTACCATTGAAGTATC+AGG + chr8_2:57703724-57703743 None:intergenic 45.0%
TCACATTCTTCATCGAGTGG+AGG + chr8_2:57703811-57703830 None:intergenic 45.0%
GACTCACATTCTTCATCGAG+TGG + chr8_2:57703814-57703833 None:intergenic 45.0%
CGATGAAGAATGTGAGTCCA+TGG - chr8_2:57703816-57703835 Msa1257170:intron 45.0%
! GCATTGATGTCGGGCTTTAA+TGG + chr8_2:57703880-57703899 None:intergenic 45.0%
GGAAGAGGAAAAGGGAAGAA+TGG + chr8_2:57703946-57703965 None:intergenic 45.0%
GGACTGTATCCAGACCAATA+TGG + chr8_2:57703967-57703986 None:intergenic 45.0%
TTGGGCTCTTGGAATGTACT+GGG + chr8_2:57704035-57704054 None:intergenic 45.0%
ATTGGGCTCTTGGAATGTAC+TGG + chr8_2:57704036-57704055 None:intergenic 45.0%
! ATCGACATTGATTGGGCTCT+TGG + chr8_2:57704046-57704065 None:intergenic 45.0%
AGTTTACGAGACAGAGTCGA+GGG + chr8_2:57704123-57704142 None:intergenic 45.0%
TAGTTTACGAGACAGAGTCG+AGG + chr8_2:57704124-57704143 None:intergenic 45.0%
AGAAGGTCCTTCTAGACAGT+CGG - chr8_2:57704149-57704168 Msa1257170:five_prime_UTR 45.0%
TGAAAAGCCGACTGTCTAGA+AGG + chr8_2:57704159-57704178 None:intergenic 45.0%
GCTTGTAGGCAGTAGTATCT+AGG - chr8_2:57704323-57704342 Msa1257170:five_prime_UTR 45.0%
!!! AATATTATATTTTTGATTTT+TGG - chr8_2:57701727-57701746 Msa1257170:intron 5.0%
! TGGTTCGGAGATTGTTGACG+TGG + chr8_2:57700966-57700985 None:intergenic 50.0%
!! TGTTTGGTTTGGTCTCCCTC+GGG + chr8_2:57701142-57701161 None:intergenic 50.0%
ATGCCTCGGATCCTGTGATT+CGG - chr8_2:57701212-57701231 Msa1257170:exon 50.0%
TTCACCTCTCTCGTTCGATC+CGG - chr8_2:57701253-57701272 Msa1257170:CDS 50.0%
GCTGCAATGAGAACAACGAC+GGG + chr8_2:57701293-57701312 None:intergenic 50.0%
GGCTGCAATGAGAACAACGA+CGG + chr8_2:57701294-57701313 None:intergenic 50.0%
! AGCACTTTTCCGGATCCCAT+CGG + chr8_2:57701380-57701399 None:intergenic 50.0%
! CCATGATCAGGGTTTTCACC+AGG + chr8_2:57701478-57701497 None:intergenic 50.0%
CCTGGTGAAAACCCTGATCA+TGG - chr8_2:57701475-57701494 Msa1257170:CDS 50.0%
! AACCCTGATCATGGTGCTGA+TGG - chr8_2:57701484-57701503 Msa1257170:CDS 50.0%
CGGGAAGTAGAAGAAGAACC+AGG + chr8_2:57701532-57701551 None:intergenic 50.0%
GGTATAAGTCTCAGGCCATG+TGG - chr8_2:57701884-57701903 Msa1257170:intron 50.0%
GTGCCTAATTATGGGGGATG+AGG - chr8_2:57701978-57701997 Msa1257170:intron 50.0%
GGACCTCATCCCCCATAATT+AGG + chr8_2:57701984-57702003 None:intergenic 50.0%
ATTAAATACCGGGCTGTGGC+AGG - chr8_2:57702102-57702121 Msa1257170:intron 50.0%
GGGGTGAAACAAGCTAGACA+AGG + chr8_2:57702139-57702158 None:intergenic 50.0%
CAGGTCGAACTCTGGATTAC+CGG - chr8_2:57702302-57702321 Msa1257170:intron 50.0%
GTGTCTTGAACCTTCGGGAA+AGG + chr8_2:57702332-57702351 None:intergenic 50.0%
CTACTCACTCTTGGGAAGGA+TGG + chr8_2:57702497-57702516 None:intergenic 50.0%
CATCCTTCCCAAGAGTGAGT+AGG - chr8_2:57702495-57702514 Msa1257170:CDS 50.0%
TCTAGGCCCTACTCACTCTT+GGG + chr8_2:57702505-57702524 None:intergenic 50.0%
ATCTAGGCCCTACTCACTCT+TGG + chr8_2:57702506-57702525 None:intergenic 50.0%
CTATGTTCCTCCTCAGTCCA+TGG + chr8_2:57702813-57702832 None:intergenic 50.0%
GGATTGAACAAGCTGGGCAA+AGG - chr8_2:57702846-57702865 Msa1257170:intron 50.0%
ACAAGCTGGGCAAAGGTGAT+TGG - chr8_2:57702853-57702872 Msa1257170:intron 50.0%
GGCAAAGCAATGTGTCTAGG+CGG - chr8_2:57702952-57702971 Msa1257170:intron 50.0%
ATGTGTCTAGGCGGAAGAGA+CGG - chr8_2:57702961-57702980 Msa1257170:intron 50.0%
! GGAACTAGTTGGTTCCCTCT+CGG + chr8_2:57703374-57703393 None:intergenic 50.0%
GAACCAACTAGTTCCCTGGT+TGG - chr8_2:57703379-57703398 Msa1257170:intron 50.0%
GTTGAACCGCAGTTCAACCA+TGG - chr8_2:57703428-57703447 Msa1257170:intron 50.0%
AACCAGCCATGGTTGAACTG+CGG + chr8_2:57703437-57703456 None:intergenic 50.0%
GCAGGCACCTGATACTTCAA+TGG - chr8_2:57703714-57703733 Msa1257170:intron 50.0%
CATTCTTCATCGAGTGGAGG+AGG + chr8_2:57703808-57703827 None:intergenic 50.0%
! GACGCTTGTGCATTGATGTC+GGG + chr8_2:57703889-57703908 None:intergenic 50.0%
! CGACGCTTGTGCATTGATGT+CGG + chr8_2:57703890-57703909 None:intergenic 50.0%
CGACATCAATGCACAAGCGT+CGG - chr8_2:57703888-57703907 Msa1257170:CDS 50.0%
! TCTTTCTTAGGAGCTGGCTC+AGG + chr8_2:57703988-57704007 None:intergenic 50.0%
CTCTTGGAATGTACTGGGGT+TGG + chr8_2:57704030-57704049 None:intergenic 50.0%
TGGGCTCTTGGAATGTACTG+GGG + chr8_2:57704034-57704053 None:intergenic 50.0%
GTTTACGAGACAGAGTCGAG+GGG + chr8_2:57704122-57704141 None:intergenic 50.0%
GGAGATTGTTGACGTGGCAG+AGG + chr8_2:57700960-57700979 None:intergenic 55.0%
TCTGCAGCAGCAAAACCCGA+GGG - chr8_2:57701124-57701143 Msa1257170:three_prime_UTR 55.0%
GATCCGAATCACAGGATCCG+AGG + chr8_2:57701218-57701237 None:intergenic 55.0%
TGAACCGGATCGAACGAGAG+AGG + chr8_2:57701260-57701279 None:intergenic 55.0%
!! CTTAGCCACTATAGCGGGTC+CGG - chr8_2:57701412-57701431 Msa1257170:CDS 55.0%
!! TTAGCCACTATAGCGGGTCC+GGG - chr8_2:57701413-57701432 Msa1257170:CDS 55.0%
! GGGTTTTCACCAGGTGAACC+AGG + chr8_2:57701469-57701488 None:intergenic 55.0%
CGGTAATCCAGAGTTCGACC+TGG + chr8_2:57702304-57702323 None:intergenic 55.0%
GTCGAACTCTGGATTACCGG+AGG - chr8_2:57702305-57702324 Msa1257170:intron 55.0%
CACTCTTGGGAAGGATGGGA+AGG + chr8_2:57702492-57702511 None:intergenic 55.0%
GTGATTGGCGTGGAATTGCC+AGG - chr8_2:57702868-57702887 Msa1257170:intron 55.0%
AATAGCCGGACCGAACCAAC+CGG - chr8_2:57703343-57703362 Msa1257170:intron 55.0%
GAGGGAACCAACTAGTTCCC+TGG - chr8_2:57703375-57703394 Msa1257170:intron 55.0%
AACCGCAGTTCAACCATGGC+TGG - chr8_2:57703432-57703451 Msa1257170:intron 55.0%
CACAGAACAGTCCCACAAGC+TGG + chr8_2:57704189-57704208 None:intergenic 55.0%
CTCTGCAGCAGCAAAACCCG+AGG - chr8_2:57701123-57701142 Msa1257170:three_prime_UTR 60.0%
GTCAAACACCTGCCACAGCC+CGG + chr8_2:57702113-57702132 None:intergenic 60.0%
AACCTTCGGGAAAGGGCCTC+CGG + chr8_2:57702324-57702343 None:intergenic 60.0%
GGCCCTACTCACTCTTGGGA+AGG + chr8_2:57702501-57702520 None:intergenic 60.0%
! TGCAGGCACTCCATGGACTG+AGG - chr8_2:57702800-57702819 Msa1257170:intron 60.0%
! AGGCACTCCATGGACTGAGG+AGG - chr8_2:57702803-57702822 Msa1257170:intron 60.0%
CTGGGCAAAGGTGATTGGCG+TGG - chr8_2:57702858-57702877 Msa1257170:intron 60.0%
! GCGTGACTGGCCACTTGAGT+AGG + chr8_2:57702915-57702934 None:intergenic 60.0%
!! CACAACCGGTTGGTTCGGTC+CGG + chr8_2:57703351-57703370 None:intergenic 60.0%
! CTCGGCACAACCGGTTGGTT+CGG + chr8_2:57703356-57703375 None:intergenic 60.0%
AACCAACCGGTTGTGCCGAG+AGG - chr8_2:57703356-57703375 Msa1257170:intron 60.0%
ACCAACCGGTTGTGCCGAGA+GGG - chr8_2:57703357-57703376 Msa1257170:intron 60.0%
TGGTTCCCTCTCGGCACAAC+CGG + chr8_2:57703365-57703384 None:intergenic 60.0%
GTGGAGGAGGAGCAGGCAAA+GGG + chr8_2:57703795-57703814 None:intergenic 60.0%
AGTGGAGGAGGAGCAGGCAA+AGG + chr8_2:57703796-57703815 None:intergenic 60.0%
TCATCGAGTGGAGGAGGAGC+AGG + chr8_2:57703802-57703821 None:intergenic 60.0%
! GTCGGGCTTTAATGGGGCAG+AGG + chr8_2:57703872-57703891 None:intergenic 60.0%
!! TGCACAAGCGTCGGCTTACC+CGG - chr8_2:57703897-57703916 Msa1257170:CDS 60.0%
CAGACCCGGACCCGCTATAG+TGG + chr8_2:57701420-57701439 None:intergenic 65.0%
!! CACTATAGCGGGTCCGGGTC+TGG - chr8_2:57701418-57701437 Msa1257170:CDS 65.0%
TACCGGAGGCCCTTTCCCGA+AGG - chr8_2:57702319-57702338 Msa1257170:intron 65.0%
TCCCTCTCGGCACAACCGGT+TGG + chr8_2:57703361-57703380 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 57700925 57704509 57700925 ID=Msa1257170;Name=Msa1257170
chr8_2 mRNA 57700925 57704509 57700925 ID=Msa1257170-mRNA-1;Parent=Msa1257170;Name=Msa1257170-mRNA-1;_AED=0.15;_eAED=0.15;_QI=361|1|1|1|1|1|3|300|326
chr8_2 exon 57700925 57701716 57700925 ID=Msa1257170-mRNA-1:exon:17797;Parent=Msa1257170-mRNA-1
chr8_2 exon 57702421 57702629 57702421 ID=Msa1257170-mRNA-1:exon:17796;Parent=Msa1257170-mRNA-1
chr8_2 exon 57703869 57704509 57703869 ID=Msa1257170-mRNA-1:exon:17795;Parent=Msa1257170-mRNA-1
chr8_2 five_prime_UTR 57704149 57704509 57704149 ID=Msa1257170-mRNA-1:five_prime_utr;Parent=Msa1257170-mRNA-1
chr8_2 CDS 57703869 57704148 57703869 ID=Msa1257170-mRNA-1:cds;Parent=Msa1257170-mRNA-1
chr8_2 CDS 57702421 57702629 57702421 ID=Msa1257170-mRNA-1:cds;Parent=Msa1257170-mRNA-1
chr8_2 CDS 57701225 57701716 57701225 ID=Msa1257170-mRNA-1:cds;Parent=Msa1257170-mRNA-1
chr8_2 three_prime_UTR 57700925 57701224 57700925 ID=Msa1257170-mRNA-1:three_prime_utr;Parent=Msa1257170-mRNA-1
Gene Sequence

>Msa1257170

ATGACCCGTCGTTGTTCTCATTGCAGCCACAATGGGCACAACTCAAGAACTTGTCCAAATCGTGGTGTGAAGCTGTTTGGAGTAAGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGCCACTATAGCGGGTCCGGGTCTGGACTTTTGAATACCGGGTCAAATACTCCTGGTTCACCTGGTGAAAACCCTGATCATGGTGCTGATGGTTATGGTTCTGAGGATTTTGTTCCTGGTTCTTCTTCTACTTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGAACAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCCAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCACGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAGAGACGGTCCAGCCTGTTTGATATTGTTGCAGATGATGCACCTGATACTTCAATGGTACCGCAAGACTTCTTGTCAGCTAATCAACTACAAACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCACTCGATGAAGAATGTGAGTCCATGGATTCTACAAACTCAAACGATGGAGAGTCTGCCTCTGCCCCATTAAAGCCCGACATCAATGCACAAGCGTCGGCTTACCCGGTAGTATATCCAGCATATTATTCTCCATTCTTCCCTTTTCCTCTTCCATATTGGTCTGGATACAGTCCTGAGCCAGCTCCTAAGAAAGAAACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCAATCAATGTCGATGAACTCGTTGGCATGTCAAAACTGAGTTTAGGTGAAACTATTGGTGATACTGGCCCCTCGACTCTGTCTCGTAAACTACTTGAAGAAGGTCCTTCTAGACAGTCGGCTTTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA
Protein sequence

>Msa1257170

MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYSGSGSGLLNTGSNTPGSPGENPDHGADGYGSEDFVPGSSSTSRERKKGTPWTEEEHRMFLLGLNKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAPDTSMVPQDFLSANQLQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPLKPDINAQASAYPVVYPAYYSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDTGPSTLSRKLLEEGPSRQSAFHTTPACGTVL*