AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463890 MtrunA17_Chr3g0114351 98.630 438 6 0 1 438 1 438 0.0 858
Msa0463890 MtrunA17_Chr5g0437961 73.412 425 113 0 8 432 3 427 0.0 648
Msa0463890 MtrunA17_Chr5g0437951 54.691 437 185 4 12 436 11 446 9.63e-173 491
Msa0463890 MtrunA17_Chr7g0220531 47.196 428 220 1 10 431 29 456 6.13e-137 401
Msa0463890 MtrunA17_Chr8g0366021 46.763 417 219 1 25 438 48 464 1.20e-129 382
Msa0463890 MtrunA17_Chr6g0455911 44.165 437 234 4 10 438 20 454 1.02e-120 359
Msa0463890 MtrunA17_Chr6g0455951 42.237 438 243 4 9 438 24 459 3.94e-119 355
Msa0463890 MtrunA17_Chr6g0455981 42.523 428 237 3 10 429 22 448 4.46e-119 355
Msa0463890 MtrunA17_Chr6g0455941 43.510 416 232 2 25 438 48 462 5.48e-115 345
Msa0463890 MtrunA17_Chr2g0333321 39.815 432 251 5 10 438 62 487 1.50e-107 327
Msa0463890 MtrunA17_Chr8g0366001 45.896 268 142 1 174 438 4 271 6.31e-78 243
Msa0463890 MtrunA17_Chr6g0459871 40.449 267 156 2 174 438 50 315 6.33e-61 201
Msa0463890 MtrunA17_Chr3g0114341 77.982 109 24 0 4 112 2 110 7.08e-49 162
Msa0463890 MtrunA17_Chr8g0365971 46.296 162 86 1 25 186 52 212 1.36e-39 141
Msa0463890 MtrunA17_Chr8g0365991 50.467 107 53 0 25 131 48 154 4.63e-25 101
Msa0463890 MtrunA17_Chr4g0022261 21.991 432 296 13 14 436 124 523 3.94e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463890 AT3G56200.1 59.069 408 167 0 25 432 24 431 3.54e-174 495
Msa0463890 AT2G40420.1 58.237 431 175 2 6 431 2 432 5.32e-171 487
Msa0463890 AT3G30390.1 45.642 436 231 1 2 431 15 450 4.64e-132 389
Msa0463890 AT3G30390.3 45.642 436 231 1 2 431 15 450 4.64e-132 389
Msa0463890 AT3G30390.2 45.642 436 231 1 2 431 15 450 4.64e-132 389
Msa0463890 AT5G38820.1 44.393 428 230 2 12 431 17 444 1.83e-128 379
Msa0463890 AT5G38820.3 44.393 428 230 2 12 431 17 444 1.83e-128 379
Msa0463890 AT5G38820.2 44.393 428 230 2 12 431 22 449 2.61e-128 379
Msa0463890 AT1G80510.1 40.460 435 245 6 10 438 62 488 1.38e-97 301
Msa0463890 AT2G39130.2 23.611 432 271 13 19 435 155 542 8.11e-11 64.3
Msa0463890 AT2G39130.1 23.611 432 271 13 19 435 155 542 8.11e-11 64.3

Find 126 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTACAATCGGTCTATT+TGG 0.163160 3_3:+63460990 Msa0463890:CDS
GCATTTGTTGCCATCTGTTC+TGG 0.170280 3_3:+63460634 Msa0463890:CDS
TGAAAGAAGTACCAAATATC+TGG 0.234058 3_3:-63461287 None:intergenic
GGTTCTAACCAATGATAATT+AGG 0.245044 3_3:-63459809 None:intergenic
GTGGCTAGCAGAGGCTTCTT+AGG 0.255194 3_3:-63461194 None:intergenic
TGGTACTTCTTTCAGTTTCT+AGG 0.268753 3_3:+63461296 Msa0463890:CDS
TCTAATCGAGGAACCAGTTT+AGG 0.280409 3_3:-63460697 None:intergenic
TCAAATCCGGCGGCGGTTCC+TGG 0.299360 3_3:+63459504 Msa0463890:CDS
CTATAGCAATCCCAGATATT+TGG 0.301975 3_3:+63461276 Msa0463890:CDS
GGGGTGTTGGGGCGTGGAAG+GGG 0.305835 3_3:+63461688 Msa0463890:three_prime_UTR
GTGTTATAATCACAAACTTT+GGG 0.314828 3_3:+63459772 Msa0463890:CDS
AACAGTGGTTTGGGGTTCAT+TGG 0.328083 3_3:+63460155 Msa0463890:CDS
TGGGTTGGCTGTTGTTGCTT+TGG 0.328665 3_3:+63460654 Msa0463890:CDS
CTAATCGAGGAACCAGTTTA+GGG 0.333126 3_3:-63460696 None:intergenic
TTACTTGCAGTACATCCTAT+TGG 0.338534 3_3:+63460897 Msa0463890:intron
TACTTGCAGTACATCCTATT+GGG 0.340851 3_3:+63460898 Msa0463890:intron
CATTTGTTGCCATCTGTTCT+GGG 0.345258 3_3:+63460635 Msa0463890:CDS
CTCAAAGAGAAATTTATAAG+AGG 0.349290 3_3:-63461146 None:intergenic
GGTTCTTGTTATGCTTCCTT+TGG 0.349741 3_3:+63460213 Msa0463890:CDS
GTGTTGAATCTCCAAATAAA+AGG 0.361617 3_3:-63461016 None:intergenic
GGTGTTATGAAGGAAGCTTT+TGG 0.378184 3_3:+63459720 Msa0463890:CDS
GCATTCACATTTCATTTCAA+TGG 0.380536 3_3:+63460772 Msa0463890:CDS
GCACGGGTACTGGTTGGTTG+TGG 0.381186 3_3:+63461963 Msa0463890:three_prime_UTR
GTTCTCTTCCTAATTATCAT+TGG 0.381754 3_3:+63459801 Msa0463890:CDS
CAGAAACGTGTGACAAAGTT+GGG 0.381818 3_3:+63461838 Msa0463890:three_prime_UTR
ACAAAATTCATATAAATAGA+TGG 0.383381 3_3:+63459361 None:intergenic
CTCCGGAATCATGTCAATTC+CGG 0.385246 3_3:+63459572 Msa0463890:CDS
TGTGTTATAATCACAAACTT+TGG 0.385504 3_3:+63459771 Msa0463890:CDS
AATGTCGCCACCAGCATAAT+CGG 0.388972 3_3:+63459549 Msa0463890:CDS
GAATCCTTGAAGTACAGTTC+TGG 0.395671 3_3:+63460589 Msa0463890:intron
CGCCGGAATTGACATGATTC+CGG 0.403675 3_3:-63459574 None:intergenic
CCGTGCATCCGCACGGGTAC+TGG 0.404247 3_3:+63461953 Msa0463890:three_prime_UTR
TATTCCAGAACTGTACTTCA+AGG 0.410500 3_3:-63460593 None:intergenic
GCAGAGGCTTCTTAGGGAAT+AGG 0.417972 3_3:-63461187 None:intergenic
GGGTTCATTGGTGGAATTCA+AGG 0.420529 3_3:+63460167 Msa0463890:CDS
GATTGCTATAGCAGCAAGAT+AGG 0.434216 3_3:-63461264 None:intergenic
CCGGCGATTCTCAAAGTTCT+CGG 0.438035 3_3:+63459591 Msa0463890:CDS
CACGGGTACTGGTTGGTTGT+GGG 0.439365 3_3:+63461964 Msa0463890:three_prime_UTR
AGAAAGCAACAACAAAAGAA+TGG 0.451699 3_3:-63461646 None:intergenic
GCGGTTCCTGGTTCAATCCC+TGG 0.452034 3_3:+63459516 Msa0463890:CDS
AACAGCCAACCCAGAACAGA+TGG 0.458807 3_3:-63460644 None:intergenic
GTTCACAACTACATAATGTT+GGG 0.461427 3_3:-63462006 None:intergenic
TGTTGCCATCTGTTCTGGGT+TGG 0.462578 3_3:+63460639 Msa0463890:CDS
TGTTCACAACTACATAATGT+TGG 0.464434 3_3:-63462007 None:intergenic
GCGACATTGAATACGGCGCC+AGG 0.467060 3_3:-63459534 None:intergenic
GCTGTTGTCTACTTTACAAT+CGG 0.469071 3_3:+63460981 Msa0463890:CDS
CTTGCAAGCTCAAACCCAAT+AGG 0.469781 3_3:-63460912 None:intergenic
CAGAATGCTGATTCTGCTGT+TGG 0.471631 3_3:+63461065 Msa0463890:CDS
ACAAATCAAAGAATGATGTT+TGG 0.480585 3_3:-63460723 None:intergenic
TAAGTAGCAAGTCATAAAGT+TGG 0.482289 3_3:+63461611 Msa0463890:exon
CCAGTACCCGTGCGGATGCA+CGG 0.483044 3_3:-63461953 None:intergenic
AACCGCCGCCGGATTTGATC+CGG 0.483830 3_3:-63459499 None:intergenic
TACCTTAAAACAATAGTGCC+AGG 0.484684 3_3:-63461353 None:intergenic
GCTGTTGTTGCTTTGGTGCA+AGG 0.485497 3_3:+63460661 Msa0463890:CDS
GAAAGCAACAACAAAAGAAT+GGG 0.486157 3_3:-63461645 None:intergenic
GAGAGTTGAGAAAGGAAATG+TGG 0.487737 3_3:-63459413 None:intergenic
AGTGGTTTGGGGTTCATTGG+TGG 0.490922 3_3:+63460158 Msa0463890:CDS
TGGCTAGCAGAGGCTTCTTA+GGG 0.492601 3_3:-63461193 None:intergenic
GTGAATGCTGTGACTACAAC+AGG 0.493679 3_3:-63460757 None:intergenic
GGTGTAACCACGACGTACTC+TGG 0.498670 3_3:+63459699 Msa0463890:CDS
ATCAACAACAGCACTATGCC+TGG 0.499325 3_3:+63461319 Msa0463890:CDS
AAGTGGAGGTGAAGTGCACT+TGG 0.500293 3_3:+63460123 Msa0463890:CDS
ATAAGAATCAAGGCGAAAGA+AGG 0.506142 3_3:-63459621 None:intergenic
CAGTACCCGTGCGGATGCAC+GGG 0.506756 3_3:-63461952 None:intergenic
TAAAGCATTGTATATGTTGG+TGG 0.512729 3_3:-63461590 None:intergenic
TCTCTTGACCGGATCAAATC+CGG 0.513994 3_3:+63459491 Msa0463890:CDS
GCTGGTGGCGACATTGAATA+CGG 0.515321 3_3:-63459541 None:intergenic
TCTAATGACAGGGATGCTCT+TGG 0.515706 3_3:+63461490 Msa0463890:intron
ATTAACAATACTAACTAGCT+AGG 0.519772 3_3:-63461911 None:intergenic
CACAACCAACAAAATGAGCC+TGG 0.520269 3_3:-63461719 None:intergenic
GTCAACGTCCCTCTCTTGAC+CGG 0.521264 3_3:+63459480 Msa0463890:CDS
GAGAAAATCAACAGAAACTT+CGG 0.523044 3_3:-63459658 None:intergenic
ACAGAAACGTGTGACAAAGT+TGG 0.523459 3_3:+63461837 Msa0463890:three_prime_UTR
GAAAGAAGTACCAAATATCT+GGG 0.527104 3_3:-63461286 None:intergenic
ATACTAACTAGCTAGGTTCA+CGG 0.528827 3_3:-63461904 None:intergenic
GACCGGATCAAATCCGGCGG+CGG 0.531549 3_3:+63459497 Msa0463890:CDS
AACAGAAACTTCGGCGAGCA+CGG 0.535273 3_3:-63459649 None:intergenic
GAATAGGAGTTCATCAATGT+TGG 0.539647 3_3:-63461171 None:intergenic
TCAAAGAGAAATTTATAAGA+GGG 0.545469 3_3:-63461145 None:intergenic
GACGTACTCTGGTGTTATGA+AGG 0.546221 3_3:+63459710 Msa0463890:CDS
TTGTTGTCTGTGGCTAGCAG+AGG 0.547461 3_3:-63461203 None:intergenic
CAAGAGAGGGACGTTGACTC+CGG 0.550502 3_3:-63459475 None:intergenic
GCCACCAGCATAATCGGCTC+CGG 0.553474 3_3:+63459555 Msa0463890:CDS
TGCCAGGGAAAATAAAAGCC+AGG 0.554102 3_3:-63461337 None:intergenic
ATTGAACCAGGAACCGCCGC+CGG 0.560640 3_3:-63459510 None:intergenic
TGTTATAATCACAAACTTTG+GGG 0.562562 3_3:+63459773 Msa0463890:CDS
ACAGGACAAAATTATAGCAC+TGG 0.566982 3_3:+63461525 Msa0463890:CDS
GATTCCGGAGCCGATTATGC+TGG 0.567198 3_3:-63459559 None:intergenic
ATGTCACCAACACCGTCTGC+CGG 0.570180 3_3:+63459456 Msa0463890:CDS
CACAAATCTCTTGTTGTCTG+TGG 0.572225 3_3:-63461213 None:intergenic
CACGGCGACGATAAGAATCA+AGG 0.576008 3_3:-63459631 None:intergenic
GGTTCATTGGTGGAATTCAA+GGG 0.580061 3_3:+63460168 Msa0463890:CDS
CTATGCACTCCACATTATGT+TGG 0.580938 3_3:+63461118 Msa0463890:CDS
CCGAGAACTTTGAGAATCGC+CGG 0.581794 3_3:-63459591 None:intergenic
AGACGGTGTTGGTGACATCC+CGG 0.584616 3_3:-63459451 None:intergenic
TTGACTCCGGCAGACGGTGT+TGG 0.599042 3_3:-63459462 None:intergenic
ACTTAAAGCATTGTATATGT+TGG 0.600971 3_3:-63461593 None:intergenic
GAGGGAATACCAACATAATG+TGG 0.601359 3_3:-63461127 None:intergenic
TCTTGGCATATCAACAAGAC+AGG 0.602838 3_3:+63461507 Msa0463890:CDS
AACATACCCGTGCATCCGCA+CGG 0.603671 3_3:+63461946 Msa0463890:three_prime_UTR
ACGTATTAAACTATTGAACA+AGG 0.608704 3_3:-63461090 None:intergenic
GATTTGATCCGGTCAAGAGA+GGG 0.609106 3_3:-63459488 None:intergenic
GCATCCGCACGGGTACTGGT+TGG 0.609533 3_3:+63461957 Msa0463890:three_prime_UTR
TTGGTCTTGTACAAACGTGT+AGG 0.611958 3_3:+63460232 Msa0463890:CDS
ACCTTAAAACAATAGTGCCA+GGG 0.615343 3_3:-63461352 None:intergenic
TCCGGAGCCGATTATGCTGG+TGG 0.619780 3_3:-63459556 None:intergenic
GGATTTGATCCGGTCAAGAG+AGG 0.624870 3_3:-63459489 None:intergenic
AATATCAACTCTTCTTGCTG+TGG 0.627616 3_3:+63460612 Msa0463890:CDS
GGGACGTTGACTCCGGCAGA+CGG 0.628323 3_3:-63459468 None:intergenic
ACGGCGCCAGGGATTGAACC+AGG 0.629078 3_3:-63459522 None:intergenic
CGACATTGAATACGGCGCCA+GGG 0.630121 3_3:-63459533 None:intergenic
TTGAGCGCTTAAAGCTCCAA+CGG 0.631364 3_3:-63459745 None:intergenic
TTATCTGGAAAGGAAAGTGG+AGG 0.631552 3_3:+63460109 Msa0463890:CDS
TAATCGAGGAACCAGTTTAG+GGG 0.641606 3_3:-63460695 None:intergenic
AGAGTACGTCGTGGTTACAC+CGG 0.641853 3_3:-63459697 None:intergenic
GTTATAATCACAAACTTTGG+GGG 0.644288 3_3:+63459774 Msa0463890:CDS
ACATACCCGTGCATCCGCAC+GGG 0.647203 3_3:+63461947 Msa0463890:three_prime_UTR
AGTGGAGGTGAAGTGCACTT+GGG 0.652737 3_3:+63460124 Msa0463890:CDS
ACACGTTTGTACAAGACCAA+AGG 0.661754 3_3:-63460229 None:intergenic
GATGTTTGGTAGTCTAATCG+AGG 0.668855 3_3:-63460709 None:intergenic
AGGAAGCATAACAAGAACCA+AGG 0.686365 3_3:-63460209 None:intergenic
AGAAACGTGTGACAAAGTTG+GGG 0.706721 3_3:+63461839 Msa0463890:three_prime_UTR
CTTGACCGGATCAAATCCGG+CGG 0.711799 3_3:+63459494 Msa0463890:CDS
ACAACCAACCAGTACCCGTG+CGG 0.723794 3_3:-63461961 None:intergenic
CATAACACCAGAGTACGTCG+TGG 0.777944 3_3:-63459706 None:intergenic
CGGTGTTGGTGACATCCCGG+CGG 0.797506 3_3:-63459448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTATTATTCTATTAA+AGG + chr3_3:63461395-63461414 Msa0463890:intron 10.0%
!! ATAAAAGAAACAGATTAAAT+TGG - chr3_3:63459833-63459852 None:intergenic 15.0%
!! AAACAAAAAATTAATCCAAA+AGG - chr3_3:63459901-63459920 None:intergenic 15.0%
!! TATTTATGAAAGTTTGAATT+TGG + chr3_3:63459927-63459946 Msa0463890:intron 15.0%
!! ATTTATGAAAGTTTGAATTT+GGG + chr3_3:63459928-63459947 Msa0463890:intron 15.0%
!!! ATTATTTGTTCCTTTTTTAA+GGG + chr3_3:63460811-63460830 Msa0463890:intron 15.0%
!! ATTAGAAACAAAGAAAATTT+AGG - chr3_3:63461476-63461495 None:intergenic 15.0%
!!! ATCTTTTATCAAAATCACAT+CGG - chr3_3:63460407-63460426 None:intergenic 20.0%
!!! ACTTTTTTCGTTTTGAATTA+AGG + chr3_3:63460498-63460517 Msa0463890:intron 20.0%
!!! CATTATTTGTTCCTTTTTTA+AGG + chr3_3:63460810-63460829 Msa0463890:intron 20.0%
!! TCAAAGAGAAATTTATAAGA+GGG - chr3_3:63461148-63461167 None:intergenic 20.0%
!!! TCTACTACAAAAAGTTTTAT+TGG + chr3_3:63461666-63461685 Msa0463890:three_prime_UTR 20.0%
!!! CTACTACAAAAAGTTTTATT+GGG + chr3_3:63461667-63461686 Msa0463890:three_prime_UTR 20.0%
!!! TACTACAAAAAGTTTTATTG+GGG + chr3_3:63461668-63461687 Msa0463890:three_prime_UTR 20.0%
!!! ATTTTTTAGAGAGTTGAGAA+AGG - chr3_3:63459424-63459443 None:intergenic 25.0%
! TGTGTTATAATCACAAACTT+TGG + chr3_3:63459771-63459790 Msa0463890:CDS 25.0%
! GTGTTATAATCACAAACTTT+GGG + chr3_3:63459772-63459791 Msa0463890:CDS 25.0%
! TGTTATAATCACAAACTTTG+GGG + chr3_3:63459773-63459792 Msa0463890:CDS 25.0%
!!! AAGTTTTGCACTTTAAAGTT+TGG + chr3_3:63459984-63460003 Msa0463890:intron 25.0%
!! AAAGATAGGTTTTTGAATGA+TGG + chr3_3:63460029-63460048 Msa0463890:intron 25.0%
!! AAGATAGGTTTTTGAATGAT+GGG + chr3_3:63460030-63460049 Msa0463890:intron 25.0%
! CACTAAGAATTAAGATATCA+TGG - chr3_3:63460277-63460296 None:intergenic 25.0%
! TTGATAAAAGATATACTCTG+AGG + chr3_3:63460415-63460434 Msa0463890:intron 25.0%
! TTTGAATTAAGGAGATTAAG+TGG + chr3_3:63460509-63460528 Msa0463890:intron 25.0%
! ACAAATCAAAGAATGATGTT+TGG - chr3_3:63460726-63460745 None:intergenic 25.0%
! ACGTATTAAACTATTGAACA+AGG - chr3_3:63461093-63461112 None:intergenic 25.0%
! CTCAAAGAGAAATTTATAAG+AGG - chr3_3:63461149-63461168 None:intergenic 25.0%
!!! TTTTCTTTGTTTCTAATGAC+AGG + chr3_3:63461479-63461498 Msa0463890:intron 25.0%
!!! TTTCTTTGTTTCTAATGACA+GGG + chr3_3:63461480-63461499 Msa0463890:intron 25.0%
!!! ACTTAAAGCATTGTATATGT+TGG - chr3_3:63461596-63461615 None:intergenic 25.0%
!!! ACTACAAAAAGTTTTATTGG+GGG + chr3_3:63461669-63461688 Msa0463890:three_prime_UTR 25.0%
! ATTAACAATACTAACTAGCT+AGG - chr3_3:63461914-63461933 None:intergenic 25.0%
GAGAAAATCAACAGAAACTT+CGG - chr3_3:63459661-63459680 None:intergenic 30.0%
GTTATAATCACAAACTTTGG+GGG + chr3_3:63459774-63459793 Msa0463890:CDS 30.0%
GTTCTCTTCCTAATTATCAT+TGG + chr3_3:63459801-63459820 Msa0463890:CDS 30.0%
! GGTTCTAACCAATGATAATT+AGG - chr3_3:63459812-63459831 None:intergenic 30.0%
! GAAAGTTTGAATTTGGGATT+TGG + chr3_3:63459934-63459953 Msa0463890:intron 30.0%
GTTTGTGATGTTGAAAAGAT+AGG + chr3_3:63460015-63460034 Msa0463890:intron 30.0%
CTTAATTCTTAGTGCTTGTT+TGG + chr3_3:63460283-63460302 Msa0463890:intron 30.0%
! AAACGAAAAAAGTGCATGTT+CGG - chr3_3:63460491-63460510 None:intergenic 30.0%
GCATTCACATTTCATTTCAA+TGG + chr3_3:63460772-63460791 Msa0463890:CDS 30.0%
TACTTTACAATCGGTCTATT+TGG + chr3_3:63460990-63461009 Msa0463890:CDS 30.0%
! CTATTTGGCTACCTTTTATT+TGG + chr3_3:63461005-63461024 Msa0463890:CDS 30.0%
GTGTTGAATCTCCAAATAAA+AGG - chr3_3:63461019-63461038 None:intergenic 30.0%
!! GAAAGAAGTACCAAATATCT+GGG - chr3_3:63461289-63461308 None:intergenic 30.0%
!! TGAAAGAAGTACCAAATATC+TGG - chr3_3:63461290-63461309 None:intergenic 30.0%
TTCTATTAAAGGTGACGAAT+TGG + chr3_3:63461406-63461425 Msa0463890:intron 30.0%
ACGAATTGGAAACAGAATAA+AGG + chr3_3:63461420-63461439 Msa0463890:intron 30.0%
AATCATGAATGAATAAAGCC+AGG + chr3_3:63461448-63461467 Msa0463890:intron 30.0%
!! TAAAGCATTGTATATGTTGG+TGG - chr3_3:63461593-63461612 None:intergenic 30.0%
TAAGTAGCAAGTCATAAAGT+TGG + chr3_3:63461611-63461630 Msa0463890:exon 30.0%
GAAAGCAACAACAAAAGAAT+GGG - chr3_3:63461648-63461667 None:intergenic 30.0%
AGAAAGCAACAACAAAAGAA+TGG - chr3_3:63461649-63461668 None:intergenic 30.0%
! CTTGCAAGATTTTTACAACA+AGG - chr3_3:63461766-63461785 None:intergenic 30.0%
! CTTGTTGTAAAAATCTTGCA+AGG + chr3_3:63461764-63461783 Msa0463890:three_prime_UTR 30.0%
GTTCACAACTACATAATGTT+GGG - chr3_3:63462009-63462028 None:intergenic 30.0%
TGTTCACAACTACATAATGT+TGG - chr3_3:63462010-63462029 None:intergenic 30.0%
ATAAGAATCAAGGCGAAAGA+AGG - chr3_3:63459624-63459643 None:intergenic 35.0%
! GAGCTAAATATGACACCTTT+TGG + chr3_3:63459883-63459902 Msa0463890:intron 35.0%
! GTTTTATCTGGAAAGGAAAG+TGG + chr3_3:63460106-63460125 Msa0463890:CDS 35.0%
TTAGTGCTTGTTTGGTATGA+CGG + chr3_3:63460291-63460310 Msa0463890:intron 35.0%
TACGTGTATGTTTGGTATCA+CGG - chr3_3:63460342-63460361 None:intergenic 35.0%
CTGAGGTTTCATCAAAATCA+TGG + chr3_3:63460432-63460451 Msa0463890:intron 35.0%
TATTCCAGAACTGTACTTCA+AGG - chr3_3:63460596-63460615 None:intergenic 35.0%
AATATCAACTCTTCTTGCTG+TGG + chr3_3:63460612-63460631 Msa0463890:CDS 35.0%
AAAAACACAAACCCCTAAAC+TGG + chr3_3:63460684-63460703 Msa0463890:CDS 35.0%
TCTAGCAACACCCTTAAAAA+AGG - chr3_3:63460824-63460843 None:intergenic 35.0%
TTACTTGCAGTACATCCTAT+TGG + chr3_3:63460897-63460916 Msa0463890:intron 35.0%
TACTTGCAGTACATCCTATT+GGG + chr3_3:63460898-63460917 Msa0463890:intron 35.0%
!!! ACTGCTGTTTTCATATGAGA+TGG - chr3_3:63460939-63460958 None:intergenic 35.0%
GCTGTTGTCTACTTTACAAT+CGG + chr3_3:63460981-63461000 Msa0463890:CDS 35.0%
GAATAGGAGTTCATCAATGT+TGG - chr3_3:63461174-63461193 None:intergenic 35.0%
CTATAGCAATCCCAGATATT+TGG + chr3_3:63461276-63461295 Msa0463890:CDS 35.0%
TGGTACTTCTTTCAGTTTCT+AGG + chr3_3:63461296-63461315 Msa0463890:CDS 35.0%
ACCTTAAAACAATAGTGCCA+GGG - chr3_3:63461355-63461374 None:intergenic 35.0%
TACCTTAAAACAATAGTGCC+AGG - chr3_3:63461356-63461375 None:intergenic 35.0%
ACAAAGAAAATTTAGGAGCC+TGG - chr3_3:63461469-63461488 None:intergenic 35.0%
ACAGGACAAAATTATAGCAC+TGG + chr3_3:63461525-63461544 Msa0463890:CDS 35.0%
!!! AAAAGTTTTATTGGGGGTGT+TGG + chr3_3:63461675-63461694 Msa0463890:three_prime_UTR 35.0%
!!! AAAGTTTTATTGGGGGTGTT+GGG + chr3_3:63461676-63461695 Msa0463890:three_prime_UTR 35.0%
! AAATTCCAGGCTCATTTTGT+TGG + chr3_3:63461714-63461733 Msa0463890:three_prime_UTR 35.0%
ATACTAACTAGCTAGGTTCA+CGG - chr3_3:63461907-63461926 None:intergenic 35.0%
GAGAGTTGAGAAAGGAAATG+TGG - chr3_3:63459416-63459435 None:intergenic 40.0%
! TCTCTAAAAAATCTCACCGC+CGG + chr3_3:63459432-63459451 Msa0463890:five_prime_UTR 40.0%
!! GGTGTTATGAAGGAAGCTTT+TGG + chr3_3:63459720-63459739 Msa0463890:CDS 40.0%
CAAAACTTCACCACTCAACT+TGG - chr3_3:63459972-63459991 None:intergenic 40.0%
!! TTGTTGCTGTTTGTGTGTGA+TGG + chr3_3:63460070-63460089 Msa0463890:intron 40.0%
! TTTGTGTGTGATGGAACAAC+AGG + chr3_3:63460079-63460098 Msa0463890:intron 40.0%
! TTGTGTGTGATGGAACAACA+GGG + chr3_3:63460080-63460099 Msa0463890:intron 40.0%
! ACAACAGGGGATGTTTTATC+TGG + chr3_3:63460094-63460113 Msa0463890:intron 40.0%
! AGGGGATGTTTTATCTGGAA+AGG + chr3_3:63460099-63460118 Msa0463890:intron 40.0%
TTATCTGGAAAGGAAAGTGG+AGG + chr3_3:63460109-63460128 Msa0463890:CDS 40.0%
! GACTTTTGCAACAGTGGTTT+GGG + chr3_3:63460146-63460165 Msa0463890:CDS 40.0%
! ACTTTTGCAACAGTGGTTTG+GGG + chr3_3:63460147-63460166 Msa0463890:CDS 40.0%
GGTTCATTGGTGGAATTCAA+GGG + chr3_3:63460168-63460187 Msa0463890:CDS 40.0%
! AGTTGCTCTTTTCATCACCT+TGG + chr3_3:63460192-63460211 Msa0463890:CDS 40.0%
! AGGAAGCATAACAAGAACCA+AGG - chr3_3:63460212-63460231 None:intergenic 40.0%
! GGTTCTTGTTATGCTTCCTT+TGG + chr3_3:63460213-63460232 Msa0463890:CDS 40.0%
ACACGTTTGTACAAGACCAA+AGG - chr3_3:63460232-63460251 None:intergenic 40.0%
!! TTGGTCTTGTACAAACGTGT+AGG + chr3_3:63460232-63460251 Msa0463890:CDS 40.0%
TAGTGCTTGTTTGGTATGAC+GGG + chr3_3:63460292-63460311 Msa0463890:intron 40.0%
! ACATGGACTACGTGTATGTT+TGG - chr3_3:63460350-63460369 None:intergenic 40.0%
ACATACACGTAGTCCATGTT+CGG + chr3_3:63460351-63460370 Msa0463890:intron 40.0%
!!! TCGGATTGGCAGTGAATTTT+CGG + chr3_3:63460370-63460389 Msa0463890:intron 40.0%
GAATCCTTGAAGTACAGTTC+TGG + chr3_3:63460589-63460608 Msa0463890:intron 40.0%
! CATTTGTTGCCATCTGTTCT+GGG + chr3_3:63460635-63460654 Msa0463890:CDS 40.0%
TAATCGAGGAACCAGTTTAG+GGG - chr3_3:63460698-63460717 None:intergenic 40.0%
CTAATCGAGGAACCAGTTTA+GGG - chr3_3:63460699-63460718 None:intergenic 40.0%
TCTAATCGAGGAACCAGTTT+AGG - chr3_3:63460700-63460719 None:intergenic 40.0%
! GATGTTTGGTAGTCTAATCG+AGG - chr3_3:63460712-63460731 None:intergenic 40.0%
CTATGCACTCCACATTATGT+TGG + chr3_3:63461118-63461137 Msa0463890:CDS 40.0%
GAGGGAATACCAACATAATG+TGG - chr3_3:63461130-63461149 None:intergenic 40.0%
! CACAAATCTCTTGTTGTCTG+TGG - chr3_3:63461216-63461235 None:intergenic 40.0%
GATTGCTATAGCAGCAAGAT+AGG - chr3_3:63461267-63461286 None:intergenic 40.0%
!! TCCCTGGCACTATTGTTTTA+AGG + chr3_3:63461351-63461370 Msa0463890:CDS 40.0%
TCTTGGCATATCAACAAGAC+AGG + chr3_3:63461507-63461526 Msa0463890:CDS 40.0%
!!! AAGTTTTATTGGGGGTGTTG+GGG + chr3_3:63461677-63461696 Msa0463890:three_prime_UTR 40.0%
ACAGAAACGTGTGACAAAGT+TGG + chr3_3:63461837-63461856 Msa0463890:three_prime_UTR 40.0%
CAGAAACGTGTGACAAAGTT+GGG + chr3_3:63461838-63461857 Msa0463890:three_prime_UTR 40.0%
AGAAACGTGTGACAAAGTTG+GGG + chr3_3:63461839-63461858 Msa0463890:three_prime_UTR 40.0%
! TGTGGGTGATTTTGTGTAGT+TGG + chr3_3:63461981-63462000 Msa0463890:three_prime_UTR 40.0%
! CTCTAAAAAATCTCACCGCC+GGG + chr3_3:63459433-63459452 Msa0463890:five_prime_UTR 45.0%
GATTTGATCCGGTCAAGAGA+GGG - chr3_3:63459491-63459510 None:intergenic 45.0%
TCTCTTGACCGGATCAAATC+CGG + chr3_3:63459491-63459510 Msa0463890:CDS 45.0%
AATGTCGCCACCAGCATAAT+CGG + chr3_3:63459549-63459568 Msa0463890:CDS 45.0%
CTCCGGAATCATGTCAATTC+CGG + chr3_3:63459572-63459591 Msa0463890:CDS 45.0%
! CTCATGCGTTTTACACATGC+CGG + chr3_3:63459678-63459697 Msa0463890:CDS 45.0%
!! GACGTACTCTGGTGTTATGA+AGG + chr3_3:63459710-63459729 Msa0463890:CDS 45.0%
!!! AAGGAAGCTTTTGGTTCCGT+TGG + chr3_3:63459729-63459748 Msa0463890:CDS 45.0%
TTGAGCGCTTAAAGCTCCAA+CGG - chr3_3:63459748-63459767 None:intergenic 45.0%
! GTTGAGCAAACCAAGTTGAG+TGG + chr3_3:63459959-63459978 Msa0463890:intron 45.0%
! TGTGTGTGATGGAACAACAG+GGG + chr3_3:63460081-63460100 Msa0463890:intron 45.0%
! ACTTGGGACTTTTGCAACAG+TGG + chr3_3:63460140-63460159 Msa0463890:CDS 45.0%
! GGACTTTTGCAACAGTGGTT+TGG + chr3_3:63460145-63460164 Msa0463890:CDS 45.0%
! AACAGTGGTTTGGGGTTCAT+TGG + chr3_3:63460155-63460174 Msa0463890:CDS 45.0%
GGGTTCATTGGTGGAATTCA+AGG + chr3_3:63460167-63460186 Msa0463890:CDS 45.0%
!! TTTGGTATGACGGGCTTTGT+CGG + chr3_3:63460301-63460320 Msa0463890:intron 45.0%
ATTCACTGCCAATCCGAACA+TGG - chr3_3:63460367-63460386 None:intergenic 45.0%
! GCATTTGTTGCCATCTGTTC+TGG + chr3_3:63460634-63460653 Msa0463890:CDS 45.0%
GTGAATGCTGTGACTACAAC+AGG - chr3_3:63460760-63460779 None:intergenic 45.0%
CTTGCAAGCTCAAACCCAAT+AGG - chr3_3:63460915-63460934 None:intergenic 45.0%
!! CAGAATGCTGATTCTGCTGT+TGG + chr3_3:63461065-63461084 Msa0463890:CDS 45.0%
ATCAACAACAGCACTATGCC+TGG + chr3_3:63461319-63461338 Msa0463890:CDS 45.0%
!!! TGCCTGGCTTTTATTTTCCC+TGG + chr3_3:63461335-63461354 Msa0463890:CDS 45.0%
TGCCAGGGAAAATAAAAGCC+AGG - chr3_3:63461340-63461359 None:intergenic 45.0%
TCTAATGACAGGGATGCTCT+TGG + chr3_3:63461490-63461509 Msa0463890:intron 45.0%
CACAACCAACAAAATGAGCC+TGG - chr3_3:63461722-63461741 None:intergenic 45.0%
GGATTTGATCCGGTCAAGAG+AGG - chr3_3:63459492-63459511 None:intergenic 50.0%
! GCTGGTGGCGACATTGAATA+CGG - chr3_3:63459544-63459563 None:intergenic 50.0%
CGCCGGAATTGACATGATTC+CGG - chr3_3:63459577-63459596 None:intergenic 50.0%
! CCGAGAACTTTGAGAATCGC+CGG - chr3_3:63459594-63459613 None:intergenic 50.0%
CCGGCGATTCTCAAAGTTCT+CGG + chr3_3:63459591-63459610 Msa0463890:CDS 50.0%
CACGGCGACGATAAGAATCA+AGG - chr3_3:63459634-63459653 None:intergenic 50.0%
AACAGAAACTTCGGCGAGCA+CGG - chr3_3:63459652-63459671 None:intergenic 50.0%
AGAGTACGTCGTGGTTACAC+CGG - chr3_3:63459700-63459719 None:intergenic 50.0%
CATAACACCAGAGTACGTCG+TGG - chr3_3:63459709-63459728 None:intergenic 50.0%
AAGTGGAGGTGAAGTGCACT+TGG + chr3_3:63460123-63460142 Msa0463890:CDS 50.0%
AGTGGAGGTGAAGTGCACTT+GGG + chr3_3:63460124-63460143 Msa0463890:CDS 50.0%
! AGTGGTTTGGGGTTCATTGG+TGG + chr3_3:63460158-63460177 Msa0463890:CDS 50.0%
CACGTAGTCCATGTTCGGAT+TGG + chr3_3:63460356-63460375 Msa0463890:intron 50.0%
! TGTTGCCATCTGTTCTGGGT+TGG + chr3_3:63460639-63460658 Msa0463890:CDS 50.0%
AACAGCCAACCCAGAACAGA+TGG - chr3_3:63460647-63460666 None:intergenic 50.0%
!! TGGGTTGGCTGTTGTTGCTT+TGG + chr3_3:63460654-63460673 Msa0463890:CDS 50.0%
!! GCTGTTGTTGCTTTGGTGCA+AGG + chr3_3:63460661-63460680 Msa0463890:CDS 50.0%
GCAGAGGCTTCTTAGGGAAT+AGG - chr3_3:63461190-63461209 None:intergenic 50.0%
TGGCTAGCAGAGGCTTCTTA+GGG - chr3_3:63461196-63461215 None:intergenic 50.0%
TTGTTGTCTGTGGCTAGCAG+AGG - chr3_3:63461206-63461225 None:intergenic 50.0%
GTGGAAGGGGCAAAAATTCC+AGG + chr3_3:63461701-63461720 Msa0463890:three_prime_UTR 50.0%
!! AGACGGTGTTGGTGACATCC+CGG - chr3_3:63459454-63459473 None:intergenic 55.0%
ATGTCACCAACACCGTCTGC+CGG + chr3_3:63459456-63459475 Msa0463890:CDS 55.0%
!! CAAGAGAGGGACGTTGACTC+CGG - chr3_3:63459478-63459497 None:intergenic 55.0%
GTCAACGTCCCTCTCTTGAC+CGG + chr3_3:63459480-63459499 Msa0463890:CDS 55.0%
CTTGACCGGATCAAATCCGG+CGG + chr3_3:63459494-63459513 Msa0463890:CDS 55.0%
CGACATTGAATACGGCGCCA+GGG - chr3_3:63459536-63459555 None:intergenic 55.0%
GATTCCGGAGCCGATTATGC+TGG - chr3_3:63459562-63459581 None:intergenic 55.0%
GGTGTAACCACGACGTACTC+TGG + chr3_3:63459699-63459718 Msa0463890:CDS 55.0%
GTGGCTAGCAGAGGCTTCTT+AGG - chr3_3:63461197-63461216 None:intergenic 55.0%
AACATACCCGTGCATCCGCA+CGG + chr3_3:63461946-63461965 Msa0463890:three_prime_UTR 55.0%
ACAACCAACCAGTACCCGTG+CGG - chr3_3:63461964-63461983 None:intergenic 55.0%
!! CACGGGTACTGGTTGGTTGT+GGG + chr3_3:63461964-63461983 Msa0463890:three_prime_UTR 55.0%
TTGACTCCGGCAGACGGTGT+TGG - chr3_3:63459465-63459484 None:intergenic 60.0%
AACCGCCGCCGGATTTGATC+CGG - chr3_3:63459502-63459521 None:intergenic 60.0%
ATTGAACCAGGAACCGCCGC+CGG - chr3_3:63459513-63459532 None:intergenic 60.0%
GCGGTTCCTGGTTCAATCCC+TGG + chr3_3:63459516-63459535 Msa0463890:CDS 60.0%
GCGACATTGAATACGGCGCC+AGG - chr3_3:63459537-63459556 None:intergenic 60.0%
! GCCACCAGCATAATCGGCTC+CGG + chr3_3:63459555-63459574 Msa0463890:CDS 60.0%
TCCGGAGCCGATTATGCTGG+TGG - chr3_3:63459559-63459578 None:intergenic 60.0%
!! TTATTGGGGGTGTTGGGGCG+TGG + chr3_3:63461682-63461701 Msa0463890:three_prime_UTR 60.0%
ACATACCCGTGCATCCGCAC+GGG + chr3_3:63461947-63461966 Msa0463890:three_prime_UTR 60.0%
!! GCACGGGTACTGGTTGGTTG+TGG + chr3_3:63461963-63461982 Msa0463890:three_prime_UTR 60.0%
!! CGGTGTTGGTGACATCCCGG+CGG - chr3_3:63459451-63459470 None:intergenic 65.0%
!! GGGACGTTGACTCCGGCAGA+CGG - chr3_3:63459471-63459490 None:intergenic 65.0%
GACCGGATCAAATCCGGCGG+CGG + chr3_3:63459497-63459516 Msa0463890:CDS 65.0%
TCAAATCCGGCGGCGGTTCC+TGG + chr3_3:63459504-63459523 Msa0463890:CDS 65.0%
ACGGCGCCAGGGATTGAACC+AGG - chr3_3:63459525-63459544 None:intergenic 65.0%
CAGTACCCGTGCGGATGCAC+GGG - chr3_3:63461955-63461974 None:intergenic 65.0%
CCAGTACCCGTGCGGATGCA+CGG - chr3_3:63461956-63461975 None:intergenic 65.0%
!! GCATCCGCACGGGTACTGGT+TGG + chr3_3:63461957-63461976 Msa0463890:three_prime_UTR 65.0%
!! TGGGGGTGTTGGGGCGTGGA+AGG + chr3_3:63461686-63461705 Msa0463890:three_prime_UTR 70.0%
!! GGGGGTGTTGGGGCGTGGAA+GGG + chr3_3:63461687-63461706 Msa0463890:three_prime_UTR 70.0%
!! GGGGTGTTGGGGCGTGGAAG+GGG + chr3_3:63461688-63461707 Msa0463890:three_prime_UTR 70.0%
CCGTGCATCCGCACGGGTAC+TGG + chr3_3:63461953-63461972 Msa0463890:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63459372 63462041 63459372 ID=Msa0463890;Name=Msa0463890
chr3_3 mRNA 63459372 63462041 63459372 ID=Msa0463890-mRNA-1;Parent=Msa0463890;Name=Msa0463890-mRNA-1;_AED=0.20;_eAED=0.20;_QI=84|1|1|1|1|1|5|414|438
chr3_3 exon 63459372 63459822 63459372 ID=Msa0463890-mRNA-1:exon:13799;Parent=Msa0463890-mRNA-1
chr3_3 exon 63460101 63460253 63460101 ID=Msa0463890-mRNA-1:exon:13800;Parent=Msa0463890-mRNA-1
chr3_3 exon 63460590 63460793 63460590 ID=Msa0463890-mRNA-1:exon:13801;Parent=Msa0463890-mRNA-1
chr3_3 exon 63460907 63461372 63460907 ID=Msa0463890-mRNA-1:exon:13802;Parent=Msa0463890-mRNA-1
chr3_3 exon 63461501 63462041 63461501 ID=Msa0463890-mRNA-1:exon:13803;Parent=Msa0463890-mRNA-1
chr3_3 five_prime_UTR 63459372 63459455 63459372 ID=Msa0463890-mRNA-1:five_prime_utr;Parent=Msa0463890-mRNA-1
chr3_3 CDS 63459456 63459822 63459456 ID=Msa0463890-mRNA-1:cds;Parent=Msa0463890-mRNA-1
chr3_3 CDS 63460101 63460253 63460101 ID=Msa0463890-mRNA-1:cds;Parent=Msa0463890-mRNA-1
chr3_3 CDS 63460590 63460793 63460590 ID=Msa0463890-mRNA-1:cds;Parent=Msa0463890-mRNA-1
chr3_3 CDS 63460907 63461372 63460907 ID=Msa0463890-mRNA-1:cds;Parent=Msa0463890-mRNA-1
chr3_3 CDS 63461501 63461627 63461501 ID=Msa0463890-mRNA-1:cds;Parent=Msa0463890-mRNA-1
chr3_3 three_prime_UTR 63461628 63462041 63461628 ID=Msa0463890-mRNA-1:three_prime_utr;Parent=Msa0463890-mRNA-1
Gene Sequence

>Msa0463890

ATGTCACCAACACCGTCTGCCGGAGTCAACGTCCCTCTCTTGACCGGATCAAATCCGGCGGCGGTTCCTGGTTCAATCCCTGGCGCCGTATTCAATGTCGCCACCAGCATAATCGGCTCCGGAATCATGTCAATTCCGGCGATTCTCAAAGTTCTCGGCGTGCTTCCTTCTTTCGCCTTGATTCTTATCGTCGCCGTGCTCGCCGAAGTTTCTGTTGATTTTCTCATGCGTTTTACACATGCCGGTGTAACCACGACGTACTCTGGTGTTATGAAGGAAGCTTTTGGTTCCGTTGGAGCTTTAAGCGCTCAAGTTTGTGTTATAATCACAAACTTTGGGGGTTTAGTTCTCTTCCTAATTATCATTGGGGATGTTTTATCTGGAAAGGAAAGTGGAGGTGAAGTGCACTTGGGACTTTTGCAACAGTGGTTTGGGGTTCATTGGTGGAATTCAAGGGAAGTTGCTCTTTTCATCACCTTGGTTCTTGTTATGCTTCCTTTGGTCTTGTACAAACGTGTAGAATCCTTGAAGTACAGTTCTGGAATATCAACTCTTCTTGCTGTGGCATTTGTTGCCATCTGTTCTGGGTTGGCTGTTGTTGCTTTGGTGCAAGGAAAAACACAAACCCCTAAACTGGTTCCTCGATTAGACTACCAAACATCATTCTTTGATTTGTTCACTGCAGTTCCTGTTGTAGTCACAGCATTCACATTTCATTTCAATGTACATCCTATTGGGTTTGAGCTTGCAAGTCCATCTCATATGAAAACAGCAGTTCGATTAGCAATAATGTTTTGTGCTGTTGTCTACTTTACAATCGGTCTATTTGGCTACCTTTTATTTGGAGATTCAACACAATCAGACATTCTAATCAATTTCGATCAGAATGCTGATTCTGCTGTTGGTTCCTTGTTCAATAGTTTAATACGTGTAAGCTATGCACTCCACATTATGTTGGTATTCCCTCTTATAAATTTCTCTTTGAGAGCCAACATTGATGAACTCCTATTCCCTAAGAAGCCTCTGCTAGCCACAGACAACAAGAGATTTGTGATTATCACTCTTGTGCTCTTAGTATTCTCCTATCTTGCTGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAGTTTCTAGGATCAACAACAGCACTATGCCTGGCTTTTATTTTCCCTGGCACTATTGTTTTAAGGGATGCTCTTGGCATATCAACAAGACAGGACAAAATTATAGCACTGGTTATGATTATACTAGCTGTAGTGACAAGTGTAATTGCAATCTCCACCAACATATACAATGCTTTAAGTAGCAAGTCATAA

Protein sequence

>Msa0463890

MSPTPSAGVNVPLLTGSNPAAVPGSIPGAVFNVATSIIGSGIMSIPAILKVLGVLPSFALILIVAVLAEVSVDFLMRFTHAGVTTTYSGVMKEAFGSVGALSAQVCVIITNFGGLVLFLIIIGDVLSGKESGGEVHLGLLQQWFGVHWWNSREVALFITLVLVMLPLVLYKRVESLKYSSGISTLLAVAFVAICSGLAVVALVQGKTQTPKLVPRLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELASPSHMKTAVRLAIMFCAVVYFTIGLFGYLLFGDSTQSDILINFDQNADSAVGSLFNSLIRVSYALHIMLVFPLINFSLRANIDELLFPKKPLLATDNKRFVIITLVLLVFSYLAAIAIPDIWYFFQFLGSTTALCLAFIFPGTIVLRDALGISTRQDKIIALVMIILAVVTSVIAISTNIYNALSSKS*