Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431050 | XP_039686677.1 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 8.11e-81 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431050 | sp|M1C146|ATG8C_SOLTU | 95.726 | 117 | 5 | 0 | 1 | 117 | 1 | 117 | 5.14e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431050 | B7FH53 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 3.87e-81 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047990 | Msa1431050 | 0.920235 | 1.654460e-87 | -8.615850e-47 |
| Msa1400940 | Msa1431050 | 0.832458 | 9.344468e-56 | -8.615850e-47 |
| Msa1257170 | Msa1431050 | 0.805382 | 1.371177e-49 | -8.615850e-47 |
| Msa1258600 | Msa1431050 | 0.831074 | 2.051131e-55 | -8.615850e-47 |
| Msa1298440 | Msa1431050 | 0.827603 | 1.428121e-54 | -8.615850e-47 |
| Msa1302120 | Msa1431050 | 0.809803 | 1.579477e-50 | -8.615850e-47 |
| Msa0369660 | Msa1431050 | 0.836153 | 1.105362e-56 | -8.615850e-47 |
| Msa0427850 | Msa1431050 | 0.808714 | 2.704481e-50 | -8.615850e-47 |
| Msa0463890 | Msa1431050 | 0.823886 | 1.087711e-53 | -8.615850e-47 |
| Msa0474080 | Msa1431050 | 0.806343 | 8.612458e-50 | -8.615850e-47 |
| Msa0482360 | Msa1431050 | 0.802162 | 6.394382e-49 | -8.615850e-47 |
| Msa1207000 | Msa1431050 | 0.810962 | 8.880381e-51 | -8.615850e-47 |
| Msa1207090 | Msa1431050 | 0.803156 | 3.988248e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431050 | MtrunA17_Chr2g0322571 | 99.167 | 120 | 1 | 0 | 1 | 120 | 1 | 120 | 7.46e-85 | 243 |
| Msa1431050 | MtrunA17_Chr4g0024721 | 95.833 | 120 | 5 | 0 | 1 | 120 | 1 | 120 | 1.05e-82 | 237 |
| Msa1431050 | MtrunA17_Chr2g0288531 | 81.197 | 117 | 22 | 0 | 1 | 117 | 1 | 117 | 1.30e-71 | 209 |
| Msa1431050 | MtrunA17_Chr4g0056301 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 3.69e-71 | 208 |
| Msa1431050 | MtrunA17_Chr4g0019141 | 63.478 | 115 | 40 | 1 | 1 | 113 | 1 | 115 | 6.39e-49 | 152 |
| Msa1431050 | MtrunA17_Chr4g0069171 | 57.018 | 114 | 49 | 0 | 4 | 117 | 5 | 118 | 1.13e-47 | 149 |
| Msa1431050 | MtrunA17_Chr7g0260981 | 56.140 | 114 | 50 | 0 | 4 | 117 | 5 | 118 | 1.89e-47 | 148 |
| Msa1431050 | MtrunA17_Chr1g0194141 | 54.310 | 116 | 53 | 0 | 2 | 117 | 3 | 118 | 4.25e-42 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431050 | AT2G05630.1 | 91.667 | 120 | 10 | 0 | 1 | 120 | 1 | 120 | 3.69e-78 | 226 |
| Msa1431050 | AT1G62040.1 | 89.916 | 119 | 12 | 0 | 1 | 119 | 1 | 119 | 9.29e-78 | 225 |
| Msa1431050 | AT4G21980.2 | 84.874 | 119 | 18 | 0 | 1 | 119 | 16 | 134 | 2.54e-72 | 212 |
| Msa1431050 | AT4G21980.1 | 84.874 | 119 | 18 | 0 | 1 | 119 | 1 | 119 | 2.78e-72 | 211 |
| Msa1431050 | AT2G05630.2 | 91.743 | 109 | 9 | 0 | 12 | 120 | 56 | 164 | 1.09e-70 | 209 |
| Msa1431050 | AT4G16520.2 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.10e-70 | 206 |
| Msa1431050 | AT4G16520.1 | 83.051 | 118 | 20 | 0 | 1 | 118 | 1 | 118 | 2.10e-70 | 206 |
| Msa1431050 | AT4G04620.3 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 8.73e-69 | 202 |
| Msa1431050 | AT4G04620.2 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 8.73e-69 | 202 |
| Msa1431050 | AT4G04620.1 | 82.051 | 117 | 21 | 0 | 1 | 117 | 1 | 117 | 8.73e-69 | 202 |
| Msa1431050 | AT3G60640.1 | 75.833 | 120 | 29 | 0 | 1 | 120 | 1 | 120 | 5.84e-67 | 198 |
| Msa1431050 | AT2G45170.2 | 78.070 | 114 | 25 | 0 | 4 | 117 | 5 | 118 | 8.12e-65 | 192 |
| Msa1431050 | AT2G45170.1 | 78.070 | 114 | 25 | 0 | 4 | 117 | 5 | 118 | 8.12e-65 | 192 |
| Msa1431050 | AT1G62040.2 | 84.043 | 94 | 15 | 0 | 1 | 94 | 1 | 94 | 7.56e-54 | 164 |
| Msa1431050 | AT4G16520.3 | 79.348 | 92 | 19 | 0 | 26 | 117 | 26 | 117 | 2.48e-50 | 156 |
| Msa1431050 | AT3G15580.1 | 56.637 | 113 | 49 | 0 | 5 | 117 | 3 | 115 | 1.27e-44 | 141 |
| Msa1431050 | AT3G06420.1 | 53.097 | 113 | 53 | 0 | 5 | 117 | 7 | 119 | 2.14e-41 | 133 |
Find 52 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATGGTCCCAAATGATTT+TGG | 0.151551 | tig0026780:+31699 | Msa1431050:intergenic |
| TCTTCTCTTCTCAACTCTTT+TGG | 0.233898 | tig0026780:-34430 | Msa1431050:intron |
| GCTTTGCTGTGACAATTTAT+TGG | 0.241677 | tig0026780:-31852 | Msa1431050:three_prime_UTR |
| GGCTAAGAGTTCCTTCAAAT+TGG | 0.251624 | tig0026780:-34305 | Msa1431050:CDS |
| TGGCAATTGGGTAACGTATA+AGG | 0.274580 | tig0026780:+34539 | Msa1431050:intergenic |
| TACAGCGGGGAGAACACTTT+TGG | 0.291853 | tig0026780:-31949 | Msa1431050:CDS |
| TTGTCTAATCCAAAATCATT+TGG | 0.336859 | tig0026780:-31708 | Msa1431050:three_prime_UTR |
| ATTGGGAAGGATTTGGCAAT+TGG | 0.362325 | tig0026780:+34526 | Msa1431050:intergenic |
| CTTTGCTGTGACAATTTATT+GGG | 0.378455 | tig0026780:-31851 | Msa1431050:three_prime_UTR |
| AAACAAGATTGGGAAGGATT+TGG | 0.383012 | tig0026780:+34519 | Msa1431050:intergenic |
| CAATTTGAATACAAACATAA+AGG | 0.390713 | tig0026780:+31771 | Msa1431050:intergenic |
| TGTCTAATCCAAAATCATTT+GGG | 0.391909 | tig0026780:-31707 | Msa1431050:three_prime_UTR |
| AGGCTGAAGCTGCTCGCATA+AGG | 0.395777 | tig0026780:-33421 | Msa1431050:CDS |
| ATTGATTGCGGAAACAAGAT+TGG | 0.397853 | tig0026780:+34508 | Msa1431050:intergenic |
| TTGGGAAGGATTTGGCAATT+GGG | 0.407738 | tig0026780:+34527 | Msa1431050:intergenic |
| GGGTGTAGGTTATTGTTGAA+AGG | 0.421063 | tig0026780:-33286 | Msa1431050:intron |
| CATTGGACTTAAAATAATAA+TGG | 0.422225 | tig0026780:+31683 | Msa1431050:intergenic |
| AACGTATAAGGCTAAACTTT+AGG | 0.456116 | tig0026780:+34551 | Msa1431050:intergenic |
| CCCCGCTGTAAGTCATATAC+AGG | 0.458740 | tig0026780:+31962 | Msa1431050:intergenic |
| AAGTAGTTGCAGATTAGATA+AGG | 0.465664 | tig0026780:+31802 | Msa1431050:intergenic |
| TCCGCACCACATACACGAAC+TGG | 0.481973 | tig0026780:+32209 | Msa1431050:intergenic |
| GGTGTAGGTTATTGTTGAAA+GGG | 0.488338 | tig0026780:-33285 | Msa1431050:intron |
| AAAATGAAGATGGCCTTCTC+GGG | 0.489019 | tig0026780:+32169 | Msa1431050:intergenic |
| GAGGAAAACAAGGATGAAGA+TGG | 0.507080 | tig0026780:-31988 | Msa1431050:CDS |
| TATGATGTCTGCAATATATG+AGG | 0.514512 | tig0026780:-32007 | Msa1431050:CDS |
| TCCTGTATATGACTTACAGC+GGG | 0.516758 | tig0026780:-31963 | Msa1431050:CDS |
| TTGATTGCGGAAACAAGATT+GGG | 0.518727 | tig0026780:+34509 | Msa1431050:intergenic |
| CAACGTACTGGAATTCTATC+GGG | 0.519536 | tig0026780:+33389 | Msa1431050:intergenic |
| TGGCCTACAGTTAGATCAGC+AGG | 0.520566 | tig0026780:+32229 | Msa1431050:intergenic |
| ACAACGTACTGGAATTCTAT+CGG | 0.532190 | tig0026780:+33388 | Msa1431050:intergenic |
| AAATCTCTCTTGATTGATTG+CGG | 0.532864 | tig0026780:+34496 | Msa1431050:intergenic |
| GGCTGAAGCTGCTCGCATAA+GGG | 0.538594 | tig0026780:-33420 | Msa1431050:CDS |
| CAGCATAATCATCATCATCA+TGG | 0.541919 | tig0026780:-34326 | Msa1431050:exon |
| TTATGATTCAGAGAGGAGAC+AGG | 0.542769 | tig0026780:-33441 | Msa1431050:intron |
| GTTCCTGCTGATCTAACTGT+AGG | 0.544817 | tig0026780:-32232 | Msa1431050:CDS |
| TAGAAGAGAAGAAAAGCAAA+GGG | 0.546434 | tig0026780:+34469 | Msa1431050:intergenic |
| TCATATATATTACCAGTTGG+TGG | 0.578563 | tig0026780:+32130 | Msa1431050:intergenic |
| TGTAGGCCAGTTCGTGTATG+TGG | 0.582982 | tig0026780:-32215 | Msa1431050:CDS |
| CTAGAAGAGAAGAAAAGCAA+AGG | 0.584884 | tig0026780:+34468 | Msa1431050:intergenic |
| TTGCGGAAACAAGATTGGGA+AGG | 0.606700 | tig0026780:+34513 | Msa1431050:intergenic |
| GCCAGTTCGTGTATGTGGTG+CGG | 0.607938 | tig0026780:-32210 | Msa1431050:CDS |
| AATCAAATTGAGTCCCGAGA+AGG | 0.616573 | tig0026780:-32182 | Msa1431050:CDS |
| AGATTAGATAAGGATTGTCA+TGG | 0.617712 | tig0026780:+31812 | Msa1431050:intergenic |
| TGCAATATATGAGGAAAACA+AGG | 0.622289 | tig0026780:-31998 | Msa1431050:CDS |
| AAAGCATAACTATTTCACAT+AGG | 0.623046 | tig0026780:+31870 | Msa1431050:intergenic |
| TAATGTGAAATATTCACAAG+GGG | 0.646228 | tig0026780:-31921 | Msa1431050:exon |
| TTCCTGTATATGACTTACAG+CGG | 0.658464 | tig0026780:-31964 | Msa1431050:CDS |
| GTTAATGTGAAATATTCACA+AGG | 0.676537 | tig0026780:-31923 | Msa1431050:exon |
| ATTCAAATTGCAAATAGACG+AGG | 0.677060 | tig0026780:-31758 | Msa1431050:three_prime_UTR |
| TTAATGTGAAATATTCACAA+GGG | 0.685269 | tig0026780:-31922 | Msa1431050:exon |
| GAGAAAAGAACGAACCAAGG+GGG | 0.734252 | tig0026780:+34278 | Msa1431050:intergenic |
| CCTGTATATGACTTACAGCG+GGG | 0.753998 | tig0026780:-31962 | Msa1431050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACCTAAAAAAACAAATAT+TGG | + | tig0026780:32019-32038 | Msa1431050:intergenic | 15.0% |
| !!! | TTTGTTTTTTTAGGTTATAT+TGG | - | tig0026780:32022-32041 | Msa1431050:intron | 15.0% |
| !!! | AATTTATCGATTTTATGTTT+TGG | - | tig0026780:32052-32071 | Msa1431050:intron | 15.0% |
| !!! | TGATTTGTAATTTGAAAAAT+TGG | - | tig0026780:32137-32156 | Msa1431050:intron | 15.0% |
| !! | GATTTGTAATTTGAAAAATT+GGG | - | tig0026780:32138-32157 | Msa1431050:intron | 15.0% |
| !! | TTCATTAAAGTTGAAAATTT+GGG | - | tig0026780:32193-32212 | Msa1431050:CDS | 15.0% |
| !!! | AAATATTTACACTTTTACTT+GGG | - | tig0026780:33192-33211 | Msa1431050:intron | 15.0% |
| !!! | TTGCCAATATTTGTTTTTTT+AGG | - | tig0026780:32013-32032 | Msa1431050:CDS | 20.0% |
| !!! | GATTTTATGTTTTGGTTATT+AGG | - | tig0026780:32060-32079 | Msa1431050:intron | 20.0% |
| !! | GTTCATTAAAGTTGAAAATT+TGG | - | tig0026780:32192-32211 | Msa1431050:CDS | 20.0% |
| !! | ACGTATCAAAATTACAAAAA+CGG | + | tig0026780:32447-32466 | Msa1431050:intergenic | 20.0% |
| !!! | TCAGTTCTTTTATATTAATC+TGG | - | tig0026780:32938-32957 | Msa1431050:intron | 20.0% |
| !!! | TATTAATCTGGTTAATCTTT+TGG | - | tig0026780:32950-32969 | Msa1431050:intron | 20.0% |
| !!! | ATTAATCTGGTTAATCTTTT+GGG | - | tig0026780:32951-32970 | Msa1431050:intron | 20.0% |
| !!! | CAAATATTTACACTTTTACT+TGG | - | tig0026780:33191-33210 | Msa1431050:intron | 20.0% |
| !!! | TGATTTTTCATATATGTTTG+TGG | - | tig0026780:33287-33306 | Msa1431050:intron | 20.0% |
| !! | AGTTAATTGGTGAATAAAAA+AGG | - | tig0026780:33494-33513 | Msa1431050:intron | 20.0% |
| !! | GTTAATTGGTGAATAAAAAA+GGG | - | tig0026780:33495-33514 | Msa1431050:intron | 20.0% |
| !! | TGTAGATCAAATATATTTGT+GGG | + | tig0026780:33583-33602 | Msa1431050:intergenic | 20.0% |
| !! | TTGTAGATCAAATATATTTG+TGG | + | tig0026780:33584-33603 | Msa1431050:intergenic | 20.0% |
| !! | TAATCATATATATTACCAGT+TGG | + | tig0026780:34133-34152 | Msa1431050:intergenic | 20.0% |
| !! | ATTATTATTGTAGTTGTTGA+TGG | - | tig0026780:34149-34168 | Msa1431050:intron | 20.0% |
| !! | TTAATGTGAAATATTCACAA+GGG | - | tig0026780:34335-34354 | Msa1431050:intron | 20.0% |
| !! | CAATTTGAATACAAACATAA+AGG | + | tig0026780:34489-34508 | Msa1431050:intergenic | 20.0% |
| ! | AATTAGAGAATGAAAGAGAT+TGG | + | tig0026780:31856-31875 | Msa1431050:intergenic | 25.0% |
| ! | AATTCACATAACGATCATAA+TGG | + | tig0026780:32170-32189 | Msa1431050:intergenic | 25.0% |
| ! | AACAACAAAAGAAGAAGAAA+TGG | - | tig0026780:32264-32283 | Msa1431050:intron | 25.0% |
| !! | AGAAGAAGAAATGGTTATTT+TGG | - | tig0026780:32273-32292 | Msa1431050:intron | 25.0% |
| ! | TTGTAATCCATATACAATCA+AGG | + | tig0026780:32324-32343 | Msa1431050:intergenic | 25.0% |
| ! | AGAATAAAAAAGACACCTTT+AGG | - | tig0026780:32408-32427 | Msa1431050:intron | 25.0% |
| ! | TACAAAAACGGTTACAAAAA+CGG | + | tig0026780:32435-32454 | Msa1431050:intergenic | 25.0% |
| !! | AGATGAAGTTTTGCAAAATT+TGG | - | tig0026780:32530-32549 | Msa1431050:intron | 25.0% |
| !!! | ATTGTTGTGCTGTTTTTTTT+TGG | - | tig0026780:32558-32577 | Msa1431050:intron | 25.0% |
| ! | TAGTTGTGAACAATGAATTA+AGG | - | tig0026780:32594-32613 | Msa1431050:intron | 25.0% |
| !!! | AGTTTGTTGTTTTAGAACAT+TGG | - | tig0026780:32706-32725 | Msa1431050:intron | 25.0% |
| ! | AGTTTGTAACTTAGTAGTAA+TGG | + | tig0026780:32769-32788 | Msa1431050:intergenic | 25.0% |
| ! | ATAAACTTTATGATTCAGAG+AGG | - | tig0026780:32809-32828 | Msa1431050:intron | 25.0% |
| !!! | AACTTTTTCTTATCGATATC+TGG | + | tig0026780:33015-33034 | Msa1431050:intergenic | 25.0% |
| !! | TCTTATTTCATTTGGTTGAA+TGG | - | tig0026780:33349-33368 | Msa1431050:intron | 25.0% |
| ! | TATTTGATCTACAACAAAAG+AGG | - | tig0026780:33590-33609 | Msa1431050:intron | 25.0% |
| ! | AAATCTGTGTTTCACAAATA+TGG | - | tig0026780:33658-33677 | Msa1431050:intron | 25.0% |
| ! | GAAGTTCAAAACATAACAAA+GGG | + | tig0026780:33705-33724 | Msa1431050:intergenic | 25.0% |
| ! | TGAAGTTCAAAACATAACAA+AGG | + | tig0026780:33706-33725 | Msa1431050:intergenic | 25.0% |
| !!! | TATCGTTTTTTGTTGATTGT+AGG | - | tig0026780:33996-34015 | Msa1431050:intron | 25.0% |
| ! | GTTAATGTGAAATATTCACA+AGG | - | tig0026780:34334-34353 | Msa1431050:intron | 25.0% |
| ! | TAATGTGAAATATTCACAAG+GGG | - | tig0026780:34336-34355 | Msa1431050:intron | 25.0% |
| ! | AAAGCATAACTATTTCACAT+AGG | + | tig0026780:34390-34409 | Msa1431050:intergenic | 25.0% |
| ! | TTGTCTAATCCAAAATCATT+TGG | - | tig0026780:34549-34568 | Msa1431050:five_prime_UTR | 25.0% |
| ! | TGTCTAATCCAAAATCATTT+GGG | - | tig0026780:34550-34569 | Msa1431050:five_prime_UTR | 25.0% |
| AACGTATAAGGCTAAACTTT+AGG | + | tig0026780:31709-31728 | Msa1279370:intergenic | 30.0% | |
| AAATCTCTCTTGATTGATTG+CGG | + | tig0026780:31764-31783 | Msa1279370:intergenic | 30.0% | |
| TAGAAGAGAAGAAAAGCAAA+GGG | + | tig0026780:31791-31810 | Msa1279370:intergenic | 30.0% | |
| !! | TTTGCTTTTCTTCTCTTCTA+GGG | - | tig0026780:31791-31810 | Msa1431050:three_prime_UTR | 30.0% |
| ATTATGCTGCAACAGAATTA+GGG | + | tig0026780:31920-31939 | Msa1431050:intergenic | 30.0% | |
| ! | GGATTTGAAATTCATGTGAT+CGG | - | tig0026780:32081-32100 | Msa1431050:intron | 30.0% |
| !! | ATTTTTGTTTGCCCAAGAAA+AGG | - | tig0026780:32241-32260 | Msa1431050:CDS | 30.0% |
| !!! | CTTTTGTTGTTCCTTTTCTT+GGG | + | tig0026780:32255-32274 | Msa1431050:intergenic | 30.0% |
| !!! | TCTTTTGTTGTTCCTTTTCT+TGG | + | tig0026780:32256-32275 | Msa1431050:intergenic | 30.0% |
| GGACTAAACTAAATAACGTA+AGG | - | tig0026780:32369-32388 | Msa1431050:intron | 30.0% | |
| TTAATAAACGAACAACGTAC+TGG | + | tig0026780:32883-32902 | Msa1431050:intergenic | 30.0% | |
| !! | CATTTCTATTTGTTGTGAAG+AGG | - | tig0026780:33038-33057 | Msa1431050:intron | 30.0% |
| !! | CTTTCTGCATTAATTTGTTG+TGG | - | tig0026780:33131-33150 | Msa1431050:intron | 30.0% |
| ! | TAATGAAAGTATGACCACTA+TGG | + | tig0026780:33229-33248 | Msa1431050:intergenic | 30.0% |
| !!! | AGAGACTTTTTCATATTCGT+TGG | + | tig0026780:33471-33490 | Msa1431050:intergenic | 30.0% |
| AAAAGTCTCTCACAGTTAAT+TGG | - | tig0026780:33481-33500 | Msa1431050:intron | 30.0% | |
| !!! | CTACAACAAAAGAGGTATTT+TGG | - | tig0026780:33598-33617 | Msa1431050:intron | 30.0% |
| !!! | CAAAAGAGGTATTTTGGTTT+AGG | - | tig0026780:33604-33623 | Msa1431050:intron | 30.0% |
| !!! | TTTGTCCTCCAACAATTTTT+TGG | - | tig0026780:33744-33763 | Msa1431050:intron | 30.0% |
| !!! | TTGTCCTCCAACAATTTTTT+GGG | - | tig0026780:33745-33764 | Msa1431050:intron | 30.0% |
| CAACTAACCCAAAAAATTGT+TGG | + | tig0026780:33755-33774 | Msa1431050:intergenic | 30.0% | |
| !! | TTACTTAGTTCTAGCAACAT+TGG | - | tig0026780:33793-33812 | Msa1431050:intron | 30.0% |
| AAACCACTTCTCCTTTAATT+GGG | + | tig0026780:33863-33882 | Msa1431050:intergenic | 30.0% | |
| AAAACCACTTCTCCTTTAAT+TGG | + | tig0026780:33864-33883 | Msa1431050:intergenic | 30.0% | |
| ATGAAAATATACCACATGCA+TGG | + | tig0026780:33962-33981 | Msa1431050:intergenic | 30.0% | |
| !! | TTTTGTTGATTGTAGGTATC+TGG | - | tig0026780:34003-34022 | Msa1431050:intron | 30.0% |
| GTTCTTCACAAAAATGAAGA+TGG | + | tig0026780:34101-34120 | Msa1431050:intergenic | 30.0% | |
| TCATATATATTACCAGTTGG+TGG | + | tig0026780:34130-34149 | Msa1431050:intergenic | 30.0% | |
| CATTAGTATCATTTCCTTCA+TGG | - | tig0026780:34172-34191 | Msa1431050:intron | 30.0% | |
| TATGATGTCTGCAATATATG+AGG | - | tig0026780:34250-34269 | Msa1431050:intron | 30.0% | |
| TGCAATATATGAGGAAAACA+AGG | - | tig0026780:34259-34278 | Msa1431050:intron | 30.0% | |
| ! | CTTTGCTGTGACAATTTATT+GGG | - | tig0026780:34406-34425 | Msa1431050:intron | 30.0% |
| AGATTAGATAAGGATTGTCA+TGG | + | tig0026780:34448-34467 | Msa1431050:intergenic | 30.0% | |
| AAGTAGTTGCAGATTAGATA+AGG | + | tig0026780:34458-34477 | Msa1431050:intergenic | 30.0% | |
| ATTCAAATTGCAAATAGACG+AGG | - | tig0026780:34499-34518 | Msa1431050:five_prime_UTR | 30.0% | |
| ! | ATAATGGTCCCAAATGATTT+TGG | + | tig0026780:34561-34580 | Msa1431050:intergenic | 30.0% |
| AAACAAGATTGGGAAGGATT+TGG | + | tig0026780:31741-31760 | Msa1279370:intergenic | 35.0% | |
| TTGATTGCGGAAACAAGATT+GGG | + | tig0026780:31751-31770 | Msa1279370:intergenic | 35.0% | |
| ATTGATTGCGGAAACAAGAT+TGG | + | tig0026780:31752-31771 | Msa1279370:intergenic | 35.0% | |
| CTAGAAGAGAAGAAAAGCAA+AGG | + | tig0026780:31792-31811 | Msa1279370:intergenic | 35.0% | |
| !! | CTTTGCTTTTCTTCTCTTCT+AGG | - | tig0026780:31790-31809 | Msa1431050:three_prime_UTR | 35.0% |
| ! | TCTTCTCTTCTCAACTCTTT+TGG | - | tig0026780:31827-31846 | Msa1431050:three_prime_UTR | 35.0% |
| GATTATGCTGCAACAGAATT+AGG | + | tig0026780:31921-31940 | Msa1431050:intergenic | 35.0% | |
| CAGCATAATCATCATCATCA+TGG | - | tig0026780:31931-31950 | Msa1431050:exon | 35.0% | |
| AAGAGAAAAGAACGAACCAA+GGG | + | tig0026780:31984-32003 | Msa1431050:intergenic | 35.0% | |
| TAAGAGAAAAGAACGAACCA+AGG | + | tig0026780:31985-32004 | Msa1431050:intergenic | 35.0% | |
| TTACAGGCCTTGATTGTATA+TGG | - | tig0026780:32314-32333 | Msa1431050:intron | 35.0% | |
| ACTAATGAAAGACACATTCG+AGG | - | tig0026780:32348-32367 | Msa1431050:intron | 35.0% | |
| !!! | TAGAACATTGGTTTTCTCTC+TGG | - | tig0026780:32718-32737 | Msa1431050:intron | 35.0% |
| !!! | AGAACATTGGTTTTCTCTCT+GGG | - | tig0026780:32719-32738 | Msa1431050:intron | 35.0% |
| ACAACGTACTGGAATTCTAT+CGG | + | tig0026780:32872-32891 | Msa1431050:intergenic | 35.0% | |
| GGTGTAGGTTATTGTTGAAA+GGG | - | tig0026780:32972-32991 | Msa1431050:intron | 35.0% | |
| TGCAAGGTTAGGAACAATTA+AGG | + | tig0026780:33319-33338 | Msa1431050:intergenic | 35.0% | |
| CCAAATGAAATAAGATGCCA+AGG | + | tig0026780:33344-33363 | Msa1431050:intergenic | 35.0% | |
| ! | CCTTGGCATCTTATTTCATT+TGG | - | tig0026780:33341-33360 | Msa1431050:intron | 35.0% |
| CTAACCCAAAAAATTGTTGG+AGG | + | tig0026780:33752-33771 | Msa1431050:intergenic | 35.0% | |
| CTGTAGAAAAGTAGCAAAAG+TGG | - | tig0026780:33902-33921 | Msa1431050:intron | 35.0% | |
| AAAAATGAAGATGGCCTTCT+CGG | + | tig0026780:34092-34111 | Msa1431050:intergenic | 35.0% | |
| ! | AAGAACATTTTACCACCAAC+TGG | - | tig0026780:34115-34134 | Msa1431050:intron | 35.0% |
| TCACAAGTTAATCACCATGA+AGG | + | tig0026780:34189-34208 | Msa1431050:intergenic | 35.0% | |
| TTCCTGTATATGACTTACAG+CGG | - | tig0026780:34293-34312 | Msa1431050:CDS | 35.0% | |
| ! | GCTTTGCTGTGACAATTTAT+TGG | - | tig0026780:34405-34424 | Msa1431050:intron | 35.0% |
| TGGCAATTGGGTAACGTATA+AGG | + | tig0026780:31721-31740 | Msa1279370:intergenic | 40.0% | |
| TTGGGAAGGATTTGGCAATT+GGG | + | tig0026780:31733-31752 | Msa1279370:intergenic | 40.0% | |
| ATTGGGAAGGATTTGGCAAT+TGG | + | tig0026780:31734-31753 | Msa1279370:intergenic | 40.0% | |
| GGCTAAGAGTTCCTTCAAAT+TGG | - | tig0026780:31952-31971 | Msa1431050:CDS | 40.0% | |
| AGAGAAAAGAACGAACCAAG+GGG | + | tig0026780:31983-32002 | Msa1431050:intergenic | 40.0% | |
| CCTGTAACAAACACAGGTTT+AGG | + | tig0026780:32301-32320 | Msa1431050:intergenic | 40.0% | |
| ! | CCTAAACCTGTGTTTGTTAC+AGG | - | tig0026780:32298-32317 | Msa1431050:intron | 40.0% |
| CGTAAGGAACTACACATCAT+CGG | - | tig0026780:32385-32404 | Msa1431050:intron | 40.0% | |
| GGTTACAAAAACGGTCCTAA+AGG | + | tig0026780:32426-32445 | Msa1431050:intergenic | 40.0% | |
| !!! | GCTTTTTCAGTTCTGCTAGT+TGG | - | tig0026780:32652-32671 | Msa1431050:intron | 40.0% |
| !!! | GAACATTGGTTTTCTCTCTG+GGG | - | tig0026780:32720-32739 | Msa1431050:intron | 40.0% |
| TTATGATTCAGAGAGGAGAC+AGG | - | tig0026780:32816-32835 | Msa1431050:intron | 40.0% | |
| CAACGTACTGGAATTCTATC+GGG | + | tig0026780:32871-32890 | Msa1431050:intergenic | 40.0% | |
| CATTACATATGTACGCGCAA+AGG | + | tig0026780:32912-32931 | Msa1431050:intergenic | 40.0% | |
| !! | CTGGTTAATCTTTTGGGTGT+AGG | - | tig0026780:32957-32976 | Msa1431050:intron | 40.0% |
| GGGTGTAGGTTATTGTTGAA+AGG | - | tig0026780:32971-32990 | Msa1431050:intron | 40.0% | |
| TGGTTCACCTTGTTGAACAT+GGG | - | tig0026780:33151-33170 | Msa1431050:intron | 40.0% | |
| TGAACAACCCATGTTCAACA+AGG | + | tig0026780:33161-33180 | Msa1431050:intergenic | 40.0% | |
| ! | CATGGGTTGTTCATTGAAGT+TGG | - | tig0026780:33168-33187 | Msa1431050:intron | 40.0% |
| ATAAGATGCCAAGGTTTGCA+AGG | + | tig0026780:33335-33354 | Msa1431050:intergenic | 40.0% | |
| !! | CTTAGTTCTAGCAACATTGG+AGG | - | tig0026780:33796-33815 | Msa1431050:intron | 40.0% |
| TGTGAGTGAGATGAAGACAA+GGG | + | tig0026780:33834-33853 | Msa1431050:intergenic | 40.0% | |
| CACTTCTCCTTTAATTGGGA+GGG | + | tig0026780:33859-33878 | Msa1431050:intergenic | 40.0% | |
| AAAAGTAGCAAAAGTGGCTG+TGG | - | tig0026780:33908-33927 | Msa1431050:intron | 40.0% | |
| AATCAAATTGAGTCCCGAGA+AGG | - | tig0026780:34075-34094 | Msa1431050:intron | 40.0% | |
| AAAATGAAGATGGCCTTCTC+GGG | + | tig0026780:34091-34110 | Msa1431050:intergenic | 40.0% | |
| TCATAGCAGCTGTATGAAGA+GGG | + | tig0026780:34235-34254 | Msa1431050:intergenic | 40.0% | |
| ATCATAGCAGCTGTATGAAG+AGG | + | tig0026780:34236-34255 | Msa1431050:intergenic | 40.0% | |
| GAGGAAAACAAGGATGAAGA+TGG | - | tig0026780:34269-34288 | Msa1431050:intron | 40.0% | |
| TCCTGTATATGACTTACAGC+GGG | - | tig0026780:34294-34313 | Msa1431050:CDS | 40.0% | |
| TTGCGGAAACAAGATTGGGA+AGG | + | tig0026780:31747-31766 | Msa1279370:intergenic | 45.0% | |
| !! | AAGGGGGTGTTCCAATTTGA+AGG | + | tig0026780:31966-31985 | Msa1431050:intergenic | 45.0% |
| TTCAAATTGGAACACCCCCT+TGG | - | tig0026780:31965-31984 | Msa1431050:CDS | 45.0% | |
| GAGAAAAGAACGAACCAAGG+GGG | + | tig0026780:31982-32001 | Msa1431050:intergenic | 45.0% | |
| TCAAGGCCTGTAACAAACAC+AGG | + | tig0026780:32307-32326 | Msa1431050:intergenic | 45.0% | |
| ! | CATTTTCATCCTCCAACGTG+AGG | + | tig0026780:32491-32510 | Msa1431050:intergenic | 45.0% |
| GTGGTTCACCTTGTTGAACA+TGG | - | tig0026780:33150-33169 | Msa1431050:intron | 45.0% | |
| GTTCCTAACCTTGCAAACCT+TGG | - | tig0026780:33324-33343 | Msa1431050:intron | 45.0% | |
| ATGCCAAGGTTTGCAAGGTT+AGG | + | tig0026780:33330-33349 | Msa1431050:intergenic | 45.0% | |
| GTTCTAGCAACATTGGAGGT+TGG | - | tig0026780:33800-33819 | Msa1431050:intron | 45.0% | |
| GTGTGAGTGAGATGAAGACA+AGG | + | tig0026780:33835-33854 | Msa1431050:intergenic | 45.0% | |
| TCACACACCCTCCCAATTAA+AGG | - | tig0026780:33849-33868 | Msa1431050:intron | 45.0% | |
| CCACTTCTCCTTTAATTGGG+AGG | + | tig0026780:33860-33879 | Msa1431050:intergenic | 45.0% | |
| CCTCCCAATTAAAGGAGAAG+TGG | - | tig0026780:33857-33876 | Msa1431050:intron | 45.0% | |
| GTTCCTGCTGATCTAACTGT+AGG | - | tig0026780:34025-34044 | Msa1431050:intron | 45.0% | |
| CCTGTATATGACTTACAGCG+GGG | - | tig0026780:34295-34314 | Msa1431050:CDS | 45.0% | |
| GATATCGCAGTCCATGCATG+TGG | - | tig0026780:33948-33967 | Msa1431050:intron | 50.0% | |
| TGGCCTACAGTTAGATCAGC+AGG | + | tig0026780:34031-34050 | Msa1431050:intergenic | 50.0% | |
| TGTAGGCCAGTTCGTGTATG+TGG | - | tig0026780:34042-34061 | Msa1431050:intron | 50.0% | |
| CCCCGCTGTAAGTCATATAC+AGG | + | tig0026780:34298-34317 | Msa1431050:intergenic | 50.0% | |
| ! | TACAGCGGGGAGAACACTTT+TGG | - | tig0026780:34308-34327 | Msa1431050:CDS | 50.0% |
| ! | ACAGCGGGGAGAACACTTTT+GGG | - | tig0026780:34309-34328 | Msa1431050:CDS | 50.0% |
| ATTGTGACAGCGCCTCACGT+TGG | - | tig0026780:32476-32495 | Msa1431050:intron | 55.0% | |
| AGGCTGAAGCTGCTCGCATA+AGG | - | tig0026780:32836-32855 | Msa1431050:intron | 55.0% | |
| GGCTGAAGCTGCTCGCATAA+GGG | - | tig0026780:32837-32856 | Msa1431050:intron | 55.0% | |
| GGGCTAGACTAGAGCCATAG+TGG | - | tig0026780:33212-33231 | Msa1431050:intron | 55.0% | |
| GCCAGTTCGTGTATGTGGTG+CGG | - | tig0026780:34047-34066 | Msa1431050:intron | 55.0% | |
| TCCGCACCACATACACGAAC+TGG | + | tig0026780:34051-34070 | Msa1431050:intergenic | 55.0% | |
| GTGACAGCGCCTCACGTTGG+AGG | - | tig0026780:32479-32498 | Msa1431050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026780 | gene | 31691 | 34588 | 31691 | ID=Msa1431050;Name=Msa1431050 |
| tig0026780 | mRNA | 31691 | 34588 | 31691 | ID=Msa1431050-mRNA-1;Parent=Msa1431050;Name=Msa1431050-mRNA-1;_AED=0.12;_eAED=0.12;_QI=174|1|1|1|0.8|0.66|6|245|120 |
| tig0026780 | exon | 31691 | 32033 | 31691 | ID=Msa1431050-mRNA-1:exon:7364;Parent=Msa1431050-mRNA-1 |
| tig0026780 | exon | 32143 | 32261 | 32143 | ID=Msa1431050-mRNA-1:exon:7363;Parent=Msa1431050-mRNA-1 |
| tig0026780 | exon | 33248 | 33300 | 33248 | ID=Msa1431050-mRNA-1:exon:7362;Parent=Msa1431050-mRNA-1 |
| tig0026780 | exon | 33397 | 33452 | 33397 | ID=Msa1431050-mRNA-1:exon:7361;Parent=Msa1431050-mRNA-1 |
| tig0026780 | exon | 34293 | 34345 | 34293 | ID=Msa1431050-mRNA-1:exon:7360;Parent=Msa1431050-mRNA-1 |
| tig0026780 | exon | 34431 | 34588 | 34431 | ID=Msa1431050-mRNA-1:exon:7359;Parent=Msa1431050-mRNA-1 |
| tig0026780 | five_prime_UTR | 34431 | 34588 | 34431 | ID=Msa1431050-mRNA-1:five_prime_utr;Parent=Msa1431050-mRNA-1 |
| tig0026780 | five_prime_UTR | 34330 | 34345 | 34330 | ID=Msa1431050-mRNA-1:five_prime_utr;Parent=Msa1431050-mRNA-1 |
| tig0026780 | CDS | 34293 | 34329 | 34293 | ID=Msa1431050-mRNA-1:cds;Parent=Msa1431050-mRNA-1 |
| tig0026780 | CDS | 33397 | 33452 | 33397 | ID=Msa1431050-mRNA-1:cds;Parent=Msa1431050-mRNA-1 |
| tig0026780 | CDS | 33248 | 33300 | 33248 | ID=Msa1431050-mRNA-1:cds;Parent=Msa1431050-mRNA-1 |
| tig0026780 | CDS | 32143 | 32261 | 32143 | ID=Msa1431050-mRNA-1:cds;Parent=Msa1431050-mRNA-1 |
| tig0026780 | CDS | 31936 | 32033 | 31936 | ID=Msa1431050-mRNA-1:cds;Parent=Msa1431050-mRNA-1 |
| tig0026780 | three_prime_UTR | 31691 | 31935 | 31691 | ID=Msa1431050-mRNA-1:three_prime_utr;Parent=Msa1431050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
