AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1066490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066490 MtrunA17_Chr7g0247051 94.332 247 14 0 1 247 1 247 2.89e-177 486
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1066490 AT2G45790.1 81.633 245 45 0 1 245 1 245 1.69e-153 427

Find 74 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAGATAAAACCATGAATT+TGG 0.164796 7_2:-60512916 None:intergenic
AATCTCACTAACCTCTTAAT+AGG 0.197187 7_2:-60510849 None:intergenic
CAAACTCGTCTCTTTCTTCT+TGG 0.197416 7_2:-60510998 None:intergenic
AAGCAATCACACCAGGTTTC+AGG 0.231242 7_2:-60509210 None:intergenic
GCATTTCATTCAATTAAATT+TGG 0.242257 7_2:+60512870 Msa1066490:three_prime_UTR
TCTTTCACGTTTCCATTTGT+TGG 0.294029 7_2:+60508802 Msa1066490:five_prime_UTR
TTAAACCAAATCAAAACTTT+TGG 0.303905 7_2:-60512941 None:intergenic
ATTGCTTTGTTTGATGTTGA+TGG 0.316545 7_2:+60509226 Msa1066490:CDS
GATCAGATTCATAAATTTCA+TGG 0.320831 7_2:-60512432 None:intergenic
CAGAGCTTGAAGACATTCAT+TGG 0.326846 7_2:+60510521 Msa1066490:intron
GTGTTAATTACCCAAATTCA+TGG 0.329022 7_2:+60512905 Msa1066490:three_prime_UTR
TTGTAACGGTTGGAGTTGTT+GGG 0.339961 7_2:+60509917 Msa1066490:CDS
CAGTATATCGTTATTGATAC+TGG 0.348020 7_2:+60512702 Msa1066490:three_prime_UTR
ATTGTAACGGTTGGAGTTGT+TGG 0.366862 7_2:+60509916 Msa1066490:CDS
GCAGTGTACATCTCTCTTCC+TGG 0.367520 7_2:+60512659 Msa1066490:CDS
CTTTCACGTTTCCATTTGTT+GGG 0.372057 7_2:+60508803 Msa1066490:five_prime_UTR
TGATTAATAGTAAGTTATAA+TGG 0.376398 7_2:+60509183 Msa1066490:exon
CACTGCTTGATAGTATCTTC+AGG 0.385900 7_2:-60512642 None:intergenic
TTATATAATATACTATAGAT+TGG 0.386236 7_2:-60508867 None:intergenic
TACTGCTTGAGATACCTTGA+TGG 0.396477 7_2:+60511355 Msa1066490:CDS
AAAGAATAAAATACCTTCCT+TGG 0.401547 7_2:-60509262 None:intergenic
TGGCTACAGTTTCTCCCAAT+AGG 0.406761 7_2:-60510978 None:intergenic
GCTTCATTACATTGCTGACT+TGG 0.410076 7_2:+60510821 Msa1066490:CDS
GAAGAAGATGGGTCTTGAAT+GGG 0.410546 7_2:-60508892 None:intergenic
AGAGCTTGAAGACATTCATT+GGG 0.413591 7_2:+60510522 Msa1066490:intron
GTAGATAAAACCATGAATTT+GGG 0.413834 7_2:-60512915 None:intergenic
TAAGAAGAGATTGAAGAAGA+TGG 0.416470 7_2:-60508904 None:intergenic
ATCTCACTAACCTCTTAATA+GGG 0.431862 7_2:-60510848 None:intergenic
ATGTTGAATGTGTCACCTAT+TGG 0.447595 7_2:+60510963 Msa1066490:CDS
TGAAGAAGATGGGTCTTGAA+TGG 0.451294 7_2:-60508893 None:intergenic
ACTTGGATATCCCTATTAAG+AGG 0.458360 7_2:+60510838 Msa1066490:CDS
AAGAAGAGATTGAAGAAGAT+GGG 0.460082 7_2:-60508903 None:intergenic
CATAAGCAAGGACAGCTCAT+TGG 0.473469 7_2:+60510357 Msa1066490:CDS
AAAACAATAATCATAGTCAT+TGG 0.476754 7_2:-60510313 None:intergenic
TATGAATCTGATCGGACTAT+CGG 0.479199 7_2:+60512442 Msa1066490:CDS
TTCAAGTGGGACCCAACAAA+TGG 0.484081 7_2:-60508814 None:intergenic
ATGAATCTGATCGGACTATC+GGG 0.497720 7_2:+60512443 Msa1066490:CDS
AGCAATCACACCAGGTTTCA+GGG 0.498276 7_2:-60509209 None:intergenic
TGTAACGGTTGGAGTTGTTG+GGG 0.499649 7_2:+60509918 Msa1066490:CDS
TCTGAGCAACTTGGTCAGAC+AGG 0.503594 7_2:+60509961 Msa1066490:CDS
TGTTGAATGTGTCACCTATT+GGG 0.513383 7_2:+60510964 Msa1066490:CDS
AAGAAGATGGGTCTTGAATG+GGG 0.522066 7_2:-60508891 None:intergenic
ATAATGGCTGCCCTGAAACC+TGG 0.534391 7_2:+60509199 Msa1066490:exon
ACTGCTTGATAGTATCTTCA+GGG 0.539223 7_2:-60512641 None:intergenic
AATCTCTTCTTATTTCTACC+TGG 0.544535 7_2:+60508915 Msa1066490:five_prime_UTR
GGTACACAGATTGTAACGGT+TGG 0.549280 7_2:+60509907 Msa1066490:intron
CATTTATTGAGTTCCGTAGT+GGG 0.550324 7_2:+60510940 Msa1066490:CDS
AGCAATGATTTACAGAGGAG+AGG 0.551697 7_2:+60512736 Msa1066490:three_prime_UTR
GCAATGATTTACAGAGGAGA+GGG 0.553178 7_2:+60512737 Msa1066490:three_prime_UTR
ATGAAATTTATGAATCTGAT+CGG 0.555653 7_2:+60512434 Msa1066490:CDS
AAAGCTTATCTGTCCTCCAA+TGG 0.558484 7_2:-60511210 None:intergenic
CAGTGTACATCTCTCTTCCT+GGG 0.558609 7_2:+60512660 Msa1066490:CDS
CTTGATAGTATCTTCAGGGC+TGG 0.567801 7_2:-60512637 None:intergenic
GGATTTCATTGAAACCATCA+AGG 0.573964 7_2:-60511369 None:intergenic
ACATTTATTGAGTTCCGTAG+TGG 0.588865 7_2:+60510939 Msa1066490:CDS
AGGACAGCTCATTGGAACTC+AGG 0.590199 7_2:+60510365 Msa1066490:CDS
CATTGGGGATGAACAGCTCA+AGG 0.593332 7_2:+60510538 Msa1066490:CDS
GTAAAGATATCTGAGCAACT+TGG 0.594397 7_2:+60509952 Msa1066490:CDS
TTTGGGTACACAGATTGTAA+CGG 0.605387 7_2:+60509903 Msa1066490:intron
ATGGAACTCTTACAGCTCCA+AGG 0.610758 7_2:+60509245 Msa1066490:CDS
GGTCTTGTGGCTCATAAGCA+AGG 0.614182 7_2:+60510345 Msa1066490:CDS
GTAACGGTTGGAGTTGTTGG+GGG 0.614289 7_2:+60509919 Msa1066490:CDS
AACTCTTACAGCTCCAAGGA+AGG 0.622019 7_2:+60509249 Msa1066490:CDS
TATTGATACTGGAAACAACA+TGG 0.628794 7_2:+60512713 Msa1066490:three_prime_UTR
AGTTGAAGAGAAGATTCAAG+TGG 0.634220 7_2:-60508828 None:intergenic
CGAGTTTGAGAAGTATGACA+AGG 0.638409 7_2:+60511013 Msa1066490:CDS
ATAATTATATTCAAATCATG+TGG 0.644615 7_2:-60512760 None:intergenic
GAGCTTGAAGACATTCATTG+GGG 0.646459 7_2:+60510523 Msa1066490:intron
GATCGGACTATCGGGCACAC+AGG 0.652693 7_2:+60512451 Msa1066490:CDS
GTTCATACAAGATCTACGAA+AGG 0.660966 7_2:+60509749 Msa1066490:CDS
ACACATTCAACATCCCACTA+CGG 0.661979 7_2:-60510953 None:intergenic
TCAAACAAAGCAATCACACC+AGG 0.663993 7_2:-60509217 None:intergenic
GTTGAAGAGAAGATTCAAGT+GGG 0.678342 7_2:-60508827 None:intergenic
CATGGAGCAATGATTTACAG+AGG 0.701321 7_2:+60512731 Msa1066490:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAATATACTATAGAT+TGG - chr7_2:60508870-60508889 None:intergenic 10.0%
!!! AAATTTTTCTTATATAGATT+AGG - chr7_2:60510912-60510931 None:intergenic 10.0%
!!! ATCTATATAAGAAAAATTTT+AGG + chr7_2:60510913-60510932 Msa1066490:intron 10.0%
!!! TCTATATAAGAAAAATTTTA+GGG + chr7_2:60510914-60510933 Msa1066490:intron 10.0%
!!! AATCAATTTTAGGATATTTA+GGG - chr7_2:60508774-60508793 None:intergenic 15.0%
!! TGATTAATAGTAAGTTATAA+TGG + chr7_2:60509183-60509202 Msa1066490:exon 15.0%
!! AAGAGTTGTTAAATAATTAA+TGG + chr7_2:60509475-60509494 Msa1066490:intron 15.0%
!!! CTATATAAGAAAAATTTTAG+GGG + chr7_2:60510915-60510934 Msa1066490:intron 15.0%
!! AAAGATAATTAACAACATAA+TGG + chr7_2:60511681-60511700 Msa1066490:intron 15.0%
!! AATGAAAAAGATAAAAGTTT+AGG - chr7_2:60512389-60512408 None:intergenic 15.0%
!! ATAATTATATTCAAATCATG+TGG - chr7_2:60512763-60512782 None:intergenic 15.0%
!!! GAATCAATTTTAGGATATTT+AGG - chr7_2:60508775-60508794 None:intergenic 20.0%
!!! GAGAATAAAGAATCAATTTT+AGG - chr7_2:60508784-60508803 None:intergenic 20.0%
!!! TTTTTAGTTTTTTTGCTTGA+AGG + chr7_2:60509122-60509141 Msa1066490:intron 20.0%
!! TAAATAATTAATGGTTATGC+CGG + chr7_2:60509484-60509503 Msa1066490:intron 20.0%
!!! ATTTCTTATTTCTGATTGTT+TGG + chr7_2:60509661-60509680 Msa1066490:intron 20.0%
!!! TTTGTGAAAAAAATCGATTT+TGG + chr7_2:60510052-60510071 Msa1066490:intron 20.0%
!! AAAACAATAATCATAGTCAT+TGG - chr7_2:60510316-60510335 None:intergenic 20.0%
!! GAATAGGAAAAGAAATATAT+AGG - chr7_2:60510570-60510589 None:intergenic 20.0%
!!! ATAATAACAATGTATTTTGC+AGG + chr7_2:60510782-60510801 Msa1066490:intron 20.0%
!!! TCTTTAATTTGAATTGCTAA+AGG + chr7_2:60511078-60511097 Msa1066490:intron 20.0%
!!! TTATTTTTTGGTTAAGTGAT+AGG + chr7_2:60511269-60511288 Msa1066490:intron 20.0%
!! ATTATATATATGTACTCTAC+AGG + chr7_2:60511306-60511325 Msa1066490:intron 20.0%
!! TAGTACTTCACAATAAATTA+TGG - chr7_2:60511427-60511446 None:intergenic 20.0%
!! TTGTGTAACAAGAATTTATT+TGG + chr7_2:60511550-60511569 Msa1066490:intron 20.0%
!!! TTTAAGAACTTTCAATTTTG+TGG + chr7_2:60512131-60512150 Msa1066490:intron 20.0%
!! ATGAAATTTATGAATCTGAT+CGG + chr7_2:60512434-60512453 Msa1066490:CDS 20.0%
!! TTTATAAACCAAATAAATGC+TGG + chr7_2:60512558-60512577 Msa1066490:intron 20.0%
!!! TTCTGATTGTAATTTTATCA+TGG + chr7_2:60512786-60512805 Msa1066490:three_prime_UTR 20.0%
!! GCATTTCATTCAATTAAATT+TGG + chr7_2:60512870-60512889 Msa1066490:three_prime_UTR 20.0%
!!! TTAAACCAAATCAAAACTTT+TGG - chr7_2:60512944-60512963 None:intergenic 20.0%
!!! AAGTTTTGATTTGGTTTAAA+AGG + chr7_2:60512945-60512964 Msa1066490:three_prime_UTR 20.0%
! TTTACCTCATATAACAACTT+GGG + chr7_2:60508978-60508997 Msa1066490:intron 25.0%
!! GAAAAGGTTCAAAATTTTGT+AGG + chr7_2:60509150-60509169 Msa1066490:intron 25.0%
!! GTTCAAAATTTTGTAGGTTT+AGG + chr7_2:60509156-60509175 Msa1066490:intron 25.0%
! AAAGAATAAAATACCTTCCT+TGG - chr7_2:60509265-60509284 None:intergenic 25.0%
!! ATTTTACAATAAGTGAACTG+AGG - chr7_2:60509604-60509623 None:intergenic 25.0%
!! TATTTCTGATTGTTTGGATT+TGG + chr7_2:60509667-60509686 Msa1066490:intron 25.0%
! AACAAAAAAGAGCAAAGAAT+AGG - chr7_2:60509850-60509869 None:intergenic 25.0%
!!! AATCGATTTTTTTCACAAAG+TGG - chr7_2:60510051-60510070 None:intergenic 25.0%
! AAATACAATAGAAGAGAACA+AGG - chr7_2:60510116-60510135 None:intergenic 25.0%
! CATCCATTAAAATAACATAC+TGG + chr7_2:60510229-60510248 Msa1066490:intron 25.0%
!!! AGACCAGTATGTTATTTTAA+TGG - chr7_2:60510235-60510254 None:intergenic 25.0%
!!! GATTATTGTTTTTCTGAGAA+TGG + chr7_2:60510324-60510343 Msa1066490:CDS 25.0%
! CATTATAAAGCTTAGAAGAT+AGG + chr7_2:60510681-60510700 Msa1066490:intron 25.0%
!!! GATACGGTGAATTTATTTTT+TGG + chr7_2:60511257-60511276 Msa1066490:intron 25.0%
! ATATATAATCAAAGACCTGT+TGG - chr7_2:60511295-60511314 None:intergenic 25.0%
!!! TTCAATGAAATCCACTTTTT+TGG + chr7_2:60511379-60511398 Msa1066490:CDS 25.0%
! AAGTACCTAAAATCAATCAA+TGG + chr7_2:60511584-60511603 Msa1066490:intron 25.0%
!!! CATAACCATTGATTGATTTT+AGG - chr7_2:60511592-60511611 None:intergenic 25.0%
! CTAAAATCAATCAATGGTTA+TGG + chr7_2:60511590-60511609 Msa1066490:intron 25.0%
!! TCATAAACTGACTAAAGTTT+TGG - chr7_2:60511720-60511739 None:intergenic 25.0%
! AAACTTTAGTCAGTTTATGA+TGG + chr7_2:60511720-60511739 Msa1066490:intron 25.0%
! AAAAAATGTAACACTGAGAA+AGG - chr7_2:60512045-60512064 None:intergenic 25.0%
!! ATGCAAAAATCTAAAATGGT+GGG - chr7_2:60512092-60512111 None:intergenic 25.0%
!! AATGCAAAAATCTAAAATGG+TGG - chr7_2:60512093-60512112 None:intergenic 25.0%
!! ACCATTTTAGATTTTTGCAT+TGG + chr7_2:60512092-60512111 Msa1066490:intron 25.0%
!! CCATTTTAGATTTTTGCATT+GGG + chr7_2:60512093-60512112 Msa1066490:intron 25.0%
! CTAAGTAGAAAGAAAATATG+TGG - chr7_2:60512201-60512220 None:intergenic 25.0%
!! ATTTTCTTTCTACTTAGTTG+TGG + chr7_2:60512204-60512223 Msa1066490:intron 25.0%
!!! GCTTTTTTTTCTTCTTTTTC+CGG - chr7_2:60512317-60512336 None:intergenic 25.0%
! ATATCTCTATACAATGCTTA+GGG - chr7_2:60512342-60512361 None:intergenic 25.0%
! TATATCTCTATACAATGCTT+AGG - chr7_2:60512343-60512362 None:intergenic 25.0%
!! TAAGCATTGTATAGAGATAT+AGG + chr7_2:60512342-60512361 Msa1066490:intron 25.0%
! GATCAGATTCATAAATTTCA+TGG - chr7_2:60512435-60512454 None:intergenic 25.0%
!!! AAATAAATGCTGGTTCAAAA+CGG + chr7_2:60512568-60512587 Msa1066490:intron 25.0%
! AGCATATCATTCAATTAATG+TGG + chr7_2:60512835-60512854 Msa1066490:intron 25.0%
! GTAGATAAAACCATGAATTT+GGG - chr7_2:60512918-60512937 None:intergenic 25.0%
! AGTAGATAAAACCATGAATT+TGG - chr7_2:60512919-60512938 None:intergenic 25.0%
!!! ACTTTCCAAAAGTTTTGATT+TGG + chr7_2:60512936-60512955 Msa1066490:three_prime_UTR 25.0%
!! GGAAAGTTTTCAATTTTGAC+AGG - chr7_2:60508753-60508772 None:intergenic 30.0%
AAGAAGAGATTGAAGAAGAT+GGG - chr7_2:60508906-60508925 None:intergenic 30.0%
TAAGAAGAGATTGAAGAAGA+TGG - chr7_2:60508907-60508926 None:intergenic 30.0%
!! AATCTCTTCTTATTTCTACC+TGG + chr7_2:60508915-60508934 Msa1066490:five_prime_UTR 30.0%
CTTTACCTCATATAACAACT+TGG + chr7_2:60508977-60508996 Msa1066490:intron 30.0%
! CATGAAGTAAAAACAGCTTT+TGG + chr7_2:60509066-60509085 Msa1066490:intron 30.0%
!!! CTTTTGGAACTACTTTCATT+GGG + chr7_2:60509082-60509101 Msa1066490:intron 30.0%
!! ATTGCTTTGTTTGATGTTGA+TGG + chr7_2:60509226-60509245 Msa1066490:CDS 30.0%
AGAATAGGTTTATGCATGAT+TGG - chr7_2:60509835-60509854 None:intergenic 30.0%
TGTTGAATCTTGCATTGTTT+GGG + chr7_2:60509886-60509905 Msa1066490:intron 30.0%
TGAAGCATAATAAACCAAAG+TGG - chr7_2:60510000-60510019 None:intergenic 30.0%
TCAATTACAGATTGAGTTAG+TGG - chr7_2:60510395-60510414 None:intergenic 30.0%
AATCTACTTGAATACATCGT+TGG - chr7_2:60510436-60510455 None:intergenic 30.0%
ACAAAAAGTTAACGACATAG+GGG - chr7_2:60510467-60510486 None:intergenic 30.0%
CACAAAAAGTTAACGACATA+GGG - chr7_2:60510468-60510487 None:intergenic 30.0%
ACACAAAAAGTTAACGACAT+AGG - chr7_2:60510469-60510488 None:intergenic 30.0%
AGATGTGTAATGTCTTGAAT+AGG - chr7_2:60510586-60510605 None:intergenic 30.0%
TATTTATAGTATGCCTAGCA+TGG - chr7_2:60510625-60510644 None:intergenic 30.0%
TTAGAAGATAGGTGAATGAA+GGG + chr7_2:60510692-60510711 Msa1066490:intron 30.0%
ATCTCACTAACCTCTTAATA+GGG - chr7_2:60510851-60510870 None:intergenic 30.0%
AATCTCACTAACCTCTTAAT+AGG - chr7_2:60510852-60510871 None:intergenic 30.0%
! GACTCATATTGCAAATTTTC+AGG - chr7_2:60511115-60511134 None:intergenic 30.0%
!! CTTAACTTGACATTTTCCAT+TGG + chr7_2:60511194-60511213 Msa1066490:CDS 30.0%
TCACGATCTTCATAATGATA+CGG + chr7_2:60511241-60511260 Msa1066490:intron 30.0%
!! AAGTTTTGTCACCAAAAAAG+TGG - chr7_2:60511393-60511412 None:intergenic 30.0%
!! TTTTGGTGACAAAACTTACA+AGG + chr7_2:60511396-60511415 Msa1066490:CDS 30.0%
AACAGGATAAGATAATTCTC+CGG - chr7_2:60511496-60511515 None:intergenic 30.0%
! TATGCATGATTTTCATGAAC+AGG - chr7_2:60511513-60511532 None:intergenic 30.0%
AAAATCATGCATATGAATCG+AGG + chr7_2:60511520-60511539 Msa1066490:intron 30.0%
!! TAAACTGACTAAAGTTTTGG+AGG - chr7_2:60511717-60511736 None:intergenic 30.0%
ACAATTCTCTTGCAAAGTAA+AGG - chr7_2:60511747-60511766 None:intergenic 30.0%
AAATGGGAATTGCACAAAAA+TGG - chr7_2:60511812-60511831 None:intergenic 30.0%
! TGCAAAAATCTAAAATGGTG+GGG - chr7_2:60512091-60512110 None:intergenic 30.0%
CCCAATGCAAAAATCTAAAA+TGG - chr7_2:60512096-60512115 None:intergenic 30.0%
!! CTGTTTTATGATGATGTCAA+AGG + chr7_2:60512282-60512301 Msa1066490:intron 30.0%
! TTTTTCATTTTCACTGAGCA+GGG + chr7_2:60512400-60512419 Msa1066490:intron 30.0%
TATCATCATATGTACTTGTG+TGG + chr7_2:60512491-60512510 Msa1066490:intron 30.0%
TTCACCATGTAACTGAAATT+CGG - chr7_2:60512523-60512542 None:intergenic 30.0%
!! GTTTTGAACCAGCATTTATT+TGG - chr7_2:60512569-60512588 None:intergenic 30.0%
CAGTATATCGTTATTGATAC+TGG + chr7_2:60512702-60512721 Msa1066490:three_prime_UTR 30.0%
TATTGATACTGGAAACAACA+TGG + chr7_2:60512713-60512732 Msa1066490:three_prime_UTR 30.0%
GTGTTAATTACCCAAATTCA+TGG + chr7_2:60512905-60512924 Msa1066490:three_prime_UTR 30.0%
TCTTTCACGTTTCCATTTGT+TGG + chr7_2:60508802-60508821 Msa1066490:five_prime_UTR 35.0%
CTTTCACGTTTCCATTTGTT+GGG + chr7_2:60508803-60508822 Msa1066490:five_prime_UTR 35.0%
GTTGAAGAGAAGATTCAAGT+GGG - chr7_2:60508830-60508849 None:intergenic 35.0%
AGTTGAAGAGAAGATTCAAG+TGG - chr7_2:60508831-60508850 None:intergenic 35.0%
ATGAAGAAGTGAGAATTACC+AGG - chr7_2:60508936-60508955 None:intergenic 35.0%
GAAACCCAAGTTGTTATATG+AGG - chr7_2:60508985-60509004 None:intergenic 35.0%
!!! GCTTTTGGAACTACTTTCAT+TGG + chr7_2:60509081-60509100 Msa1066490:intron 35.0%
ATAATGACACTCCATCAGTA+GGG + chr7_2:60509290-60509309 Msa1066490:intron 35.0%
CAAGAAAATAACCCTACTGA+TGG - chr7_2:60509304-60509323 None:intergenic 35.0%
AACAACAATGTTGCCTATTG+CGG - chr7_2:60509563-60509582 None:intergenic 35.0%
CTGAACAAAACTAGACAATG+TGG + chr7_2:60509638-60509657 Msa1066490:intron 35.0%
! TGTTGACTACTCAATTGCTA+GGG + chr7_2:60509705-60509724 Msa1066490:intron 35.0%
GTTCATACAAGATCTACGAA+AGG + chr7_2:60509749-60509768 Msa1066490:CDS 35.0%
CTGTTGAATCTTGCATTGTT+TGG + chr7_2:60509885-60509904 Msa1066490:intron 35.0%
TTTGGGTACACAGATTGTAA+CGG + chr7_2:60509903-60509922 Msa1066490:intron 35.0%
GTAAAGATATCTGAGCAACT+TGG + chr7_2:60509952-60509971 Msa1066490:CDS 35.0%
GTTAGCTATAAGTTCCACTT+TGG + chr7_2:60509983-60510002 Msa1066490:intron 35.0%
!! CTTCAGTGTTTTGAACATGT+AGG + chr7_2:60510015-60510034 Msa1066490:intron 35.0%
TACAATAGAAGAGAACAAGG+AGG - chr7_2:60510113-60510132 None:intergenic 35.0%
GTAACTGCAACAAGCAAATA+GGG - chr7_2:60510294-60510313 None:intergenic 35.0%
!! TTTTTCTGAGAATGGTCTTG+TGG + chr7_2:60510332-60510351 Msa1066490:CDS 35.0%
AAGAAATTCACAACTCATCG+TGG - chr7_2:60510498-60510517 None:intergenic 35.0%
AGAGCTTGAAGACATTCATT+GGG + chr7_2:60510522-60510541 Msa1066490:intron 35.0%
CTTAGAAGATAGGTGAATGA+AGG + chr7_2:60510691-60510710 Msa1066490:intron 35.0%
TAGAAGATAGGTGAATGAAG+GGG + chr7_2:60510693-60510712 Msa1066490:intron 35.0%
ACTTGGATATCCCTATTAAG+AGG + chr7_2:60510838-60510857 Msa1066490:CDS 35.0%
ACATTTATTGAGTTCCGTAG+TGG + chr7_2:60510939-60510958 Msa1066490:CDS 35.0%
CATTTATTGAGTTCCGTAGT+GGG + chr7_2:60510940-60510959 Msa1066490:CDS 35.0%
ATGTTGAATGTGTCACCTAT+TGG + chr7_2:60510963-60510982 Msa1066490:CDS 35.0%
TGTTGAATGTGTCACCTATT+GGG + chr7_2:60510964-60510983 Msa1066490:CDS 35.0%
AATTTGCAATATGAGTCCTC+AGG + chr7_2:60511118-60511137 Msa1066490:intron 35.0%
TCAGAACATACGCTCAAAAA+TGG + chr7_2:60511142-60511161 Msa1066490:CDS 35.0%
! AACTTGACATTTTCCATTGG+AGG + chr7_2:60511197-60511216 Msa1066490:CDS 35.0%
! ATGTTTTATCCCAACCTTGA+GGG - chr7_2:60511336-60511355 None:intergenic 35.0%
! TATGTTTTATCCCAACCTTG+AGG - chr7_2:60511337-60511356 None:intergenic 35.0%
GGATTTCATTGAAACCATCA+AGG - chr7_2:60511372-60511391 None:intergenic 35.0%
CTTATTGAAGCCAATTTCCA+TGG - chr7_2:60512001-60512020 None:intergenic 35.0%
TCACTTTATCCATCAGATCT+TGG + chr7_2:60512241-60512260 Msa1066490:intron 35.0%
ATGTCAAAGGAAATTGCAAC+CGG + chr7_2:60512295-60512314 Msa1066490:intron 35.0%
!! CTTTTTCATTTTCACTGAGC+AGG + chr7_2:60512399-60512418 Msa1066490:intron 35.0%
TATGAATCTGATCGGACTAT+CGG + chr7_2:60512442-60512461 Msa1066490:CDS 35.0%
ATGACCGAATTTCAGTTACA+TGG + chr7_2:60512516-60512535 Msa1066490:intron 35.0%
ACGATCAATATTAACGCGTA+AGG - chr7_2:60512607-60512626 None:intergenic 35.0%
! ACTGCTTGATAGTATCTTCA+GGG - chr7_2:60512644-60512663 None:intergenic 35.0%
TGCAAAAATCTTAATGTCCC+AGG - chr7_2:60512680-60512699 None:intergenic 35.0%
TATCATGGTACTTCACATTG+TGG + chr7_2:60512801-60512820 Msa1066490:intron 35.0%
AAGAAGATGGGTCTTGAATG+GGG - chr7_2:60508894-60508913 None:intergenic 40.0%
GAAGAAGATGGGTCTTGAAT+GGG - chr7_2:60508895-60508914 None:intergenic 40.0%
TGAAGAAGATGGGTCTTGAA+TGG - chr7_2:60508896-60508915 None:intergenic 40.0%
TTGCTTGAAGGTTGCTGAAA+AGG + chr7_2:60509134-60509153 Msa1066490:intron 40.0%
TCAAACAAAGCAATCACACC+AGG - chr7_2:60509220-60509239 None:intergenic 40.0%
GATAATGACACTCCATCAGT+AGG + chr7_2:60509289-60509308 Msa1066490:intron 40.0%
ATGCTATAGTGTCATAGCTC+CGG - chr7_2:60509506-60509525 None:intergenic 40.0%
!!! TTGTCTAGTTTTGTTCAGCG+AGG - chr7_2:60509636-60509655 None:intergenic 40.0%
! CTGTTGACTACTCAATTGCT+AGG + chr7_2:60509704-60509723 Msa1066490:intron 40.0%
GTTGACTACTCAATTGCTAG+GGG + chr7_2:60509706-60509725 Msa1066490:intron 40.0%
TTGACTACTCAATTGCTAGG+GGG + chr7_2:60509707-60509726 Msa1066490:intron 40.0%
ATTGTAACGGTTGGAGTTGT+TGG + chr7_2:60509916-60509935 Msa1066490:CDS 40.0%
TTGTAACGGTTGGAGTTGTT+GGG + chr7_2:60509917-60509936 Msa1066490:CDS 40.0%
AGAACAAGGAGGAAAAACGA+TGG - chr7_2:60510102-60510121 None:intergenic 40.0%
GGTAACTGCAACAAGCAAAT+AGG - chr7_2:60510295-60510314 None:intergenic 40.0%
CTTGAATACATCGTTGGTCA+CGG - chr7_2:60510430-60510449 None:intergenic 40.0%
CAGAGCTTGAAGACATTCAT+TGG + chr7_2:60510521-60510540 Msa1066490:intron 40.0%
GAGCTTGAAGACATTCATTG+GGG + chr7_2:60510523-60510542 Msa1066490:intron 40.0%
! GCTTCATTACATTGCTGACT+TGG + chr7_2:60510821-60510840 Msa1066490:CDS 40.0%
ACACATTCAACATCCCACTA+CGG - chr7_2:60510956-60510975 None:intergenic 40.0%
CAAACTCGTCTCTTTCTTCT+TGG - chr7_2:60511001-60511020 None:intergenic 40.0%
! CGAGTTTGAGAAGTATGACA+AGG + chr7_2:60511013-60511032 Msa1066490:CDS 40.0%
AAAGCTTATCTGTCCTCCAA+TGG - chr7_2:60511213-60511232 None:intergenic 40.0%
TACTGCTTGAGATACCTTGA+TGG + chr7_2:60511355-60511374 Msa1066490:CDS 40.0%
!! CGAGTCTCTTCTAGAATGAA+GGG - chr7_2:60511661-60511680 None:intergenic 40.0%
!! TCGAGTCTCTTCTAGAATGA+AGG - chr7_2:60511662-60511681 None:intergenic 40.0%
!! GCACAAAAATGGACTGCTTA+TGG - chr7_2:60511801-60511820 None:intergenic 40.0%
! AATTTGTTCCTCGGCGATTA+GGG - chr7_2:60511836-60511855 None:intergenic 40.0%
CTCTCATGAATCAGGAAGTA+TGG + chr7_2:60511942-60511961 Msa1066490:intron 40.0%
CAATTTCCATGGCATTGCTA+TGG - chr7_2:60511990-60512009 None:intergenic 40.0%
CATAGCAATGCCATGGAAAT+TGG + chr7_2:60511988-60512007 Msa1066490:intron 40.0%
! AAAATCTAAAATGGTGGGGC+AGG - chr7_2:60512087-60512106 None:intergenic 40.0%
ACAAAGATGCCAAGATCTGA+TGG - chr7_2:60512253-60512272 None:intergenic 40.0%
ATGAATCTGATCGGACTATC+GGG + chr7_2:60512443-60512462 Msa1066490:CDS 40.0%
ATTAACGCGTAAGGTTCACA+TGG - chr7_2:60512598-60512617 None:intergenic 40.0%
! CACTGCTTGATAGTATCTTC+AGG - chr7_2:60512645-60512664 None:intergenic 40.0%
CATGGAGCAATGATTTACAG+AGG + chr7_2:60512731-60512750 Msa1066490:three_prime_UTR 40.0%
AGCAATGATTTACAGAGGAG+AGG + chr7_2:60512736-60512755 Msa1066490:three_prime_UTR 40.0%
GCAATGATTTACAGAGGAGA+GGG + chr7_2:60512737-60512756 Msa1066490:three_prime_UTR 40.0%
TTCAAGTGGGACCCAACAAA+TGG - chr7_2:60508817-60508836 None:intergenic 45.0%
AGCAATCACACCAGGTTTCA+GGG - chr7_2:60509212-60509231 None:intergenic 45.0%
AAGCAATCACACCAGGTTTC+AGG - chr7_2:60509213-60509232 None:intergenic 45.0%
ATGGAACTCTTACAGCTCCA+AGG + chr7_2:60509245-60509264 Msa1066490:CDS 45.0%
AACTCTTACAGCTCCAAGGA+AGG + chr7_2:60509249-60509268 Msa1066490:CDS 45.0%
TTGCGGATCGTGGAAAACAA+GGG - chr7_2:60509546-60509565 None:intergenic 45.0%
ATTGCGGATCGTGGAAAACA+AGG - chr7_2:60509547-60509566 None:intergenic 45.0%
! TGTTTTCCACGATCCGCAAT+AGG + chr7_2:60509547-60509566 Msa1066490:intron 45.0%
! CAAGATCTACGAAAGGTGTG+TGG + chr7_2:60509756-60509775 Msa1066490:intron 45.0%
! TCTACGAAAGGTGTGTGGTT+TGG + chr7_2:60509761-60509780 Msa1066490:intron 45.0%
GGTACACAGATTGTAACGGT+TGG + chr7_2:60509907-60509926 Msa1066490:intron 45.0%
TGTAACGGTTGGAGTTGTTG+GGG + chr7_2:60509918-60509937 Msa1066490:CDS 45.0%
TGCAACAAGCAAATAGGGAC+AGG - chr7_2:60510289-60510308 None:intergenic 45.0%
CATAAGCAAGGACAGCTCAT+TGG + chr7_2:60510357-60510376 Msa1066490:CDS 45.0%
GGATGAACAGCTCAAGGTAA+AGG + chr7_2:60510544-60510563 Msa1066490:intron 45.0%
!!! TTTTCTGAGACTGCCATGCT+AGG + chr7_2:60510609-60510628 Msa1066490:intron 45.0%
TGGCTACAGTTTCTCCCAAT+AGG - chr7_2:60510981-60511000 None:intergenic 45.0%
TGGTTAAGTGATAGGCCAAC+AGG + chr7_2:60511277-60511296 Msa1066490:intron 45.0%
! ACTCTACAGGTTTTCCCTCA+AGG + chr7_2:60511319-60511338 Msa1066490:intron 45.0%
! TACAGGTTTTCCCTCAAGGT+TGG + chr7_2:60511323-60511342 Msa1066490:intron 45.0%
! ACAGGTTTTCCCTCAAGGTT+GGG + chr7_2:60511324-60511343 Msa1066490:intron 45.0%
! CAATTTGTTCCTCGGCGATT+AGG - chr7_2:60511837-60511856 None:intergenic 45.0%
ATCGCCGAGGAACAAATTGA+AGG + chr7_2:60511838-60511857 Msa1066490:intron 45.0%
! CTGGCCTTCAATTTGTTCCT+CGG - chr7_2:60511845-60511864 None:intergenic 45.0%
AACTAGGTCCATAGGTCTTG+GGG - chr7_2:60511899-60511918 None:intergenic 45.0%
GAACTAGGTCCATAGGTCTT+GGG - chr7_2:60511900-60511919 None:intergenic 45.0%
AGAACTAGGTCCATAGGTCT+TGG - chr7_2:60511901-60511920 None:intergenic 45.0%
! ACACGAAAGGTGTGAGAACT+AGG - chr7_2:60511915-60511934 None:intergenic 45.0%
TTCTCACACCTTTCGTGTGT+GGG + chr7_2:60511917-60511936 Msa1066490:intron 45.0%
TGTGGGAACTCTCATGAATC+AGG + chr7_2:60511934-60511953 Msa1066490:intron 45.0%
! GGAAGTATGGTCTCATGTTG+CGG + chr7_2:60511955-60511974 Msa1066490:intron 45.0%
GAAGTATGGTCTCATGTTGC+GGG + chr7_2:60511956-60511975 Msa1066490:intron 45.0%
! TTCATTTTCACTGAGCAGGG+TGG + chr7_2:60512403-60512422 Msa1066490:intron 45.0%
! CTTGATAGTATCTTCAGGGC+TGG - chr7_2:60512640-60512659 None:intergenic 45.0%
CAGTGTACATCTCTCTTCCT+GGG + chr7_2:60512660-60512679 Msa1066490:CDS 45.0%
ATAATGGCTGCCCTGAAACC+TGG + chr7_2:60509199-60509218 Msa1066490:exon 50.0%
ATGTTGCCTATTGCGGATCG+TGG - chr7_2:60509556-60509575 None:intergenic 50.0%
GTAACGGTTGGAGTTGTTGG+GGG + chr7_2:60509919-60509938 Msa1066490:CDS 50.0%
TCTGAGCAACTTGGTCAGAC+AGG + chr7_2:60509961-60509980 Msa1066490:CDS 50.0%
! GGTCTTGTGGCTCATAAGCA+AGG + chr7_2:60510345-60510364 Msa1066490:CDS 50.0%
AGGACAGCTCATTGGAACTC+AGG + chr7_2:60510365-60510384 Msa1066490:CDS 50.0%
GAATACATCGTTGGTCACGG+TGG - chr7_2:60510427-60510446 None:intergenic 50.0%
CATTGGGGATGAACAGCTCA+AGG + chr7_2:60510538-60510557 Msa1066490:CDS 50.0%
! GAGCGTATGTTCTGAACCTG+AGG - chr7_2:60511137-60511156 None:intergenic 50.0%
GCGTCTGTGCATTCATATGC+CGG + chr7_2:60511474-60511493 Msa1066490:intron 50.0%
CCTCGGCGATTAGGGAAAAT+GGG - chr7_2:60511828-60511847 None:intergenic 50.0%
TCCTCGGCGATTAGGGAAAA+TGG - chr7_2:60511829-60511848 None:intergenic 50.0%
AACAAATTGAAGGCCAGCCG+TGG + chr7_2:60511848-60511867 Msa1066490:intron 50.0%
ACAAATTGAAGGCCAGCCGT+GGG + chr7_2:60511849-60511868 Msa1066490:intron 50.0%
AATTCTCGCCCCAAGACCTA+TGG + chr7_2:60511888-60511907 Msa1066490:intron 50.0%
GGTGTGAGAACTAGGTCCAT+AGG - chr7_2:60511907-60511926 None:intergenic 50.0%
GTTCTCACACCTTTCGTGTG+TGG + chr7_2:60511916-60511935 Msa1066490:intron 50.0%
TGAGAGTTCCCACACACGAA+AGG - chr7_2:60511928-60511947 None:intergenic 50.0%
! ATCTAAAATGGTGGGGCAGG+TGG - chr7_2:60512084-60512103 None:intergenic 50.0%
GCAGTGTACATCTCTCTTCC+TGG + chr7_2:60512659-60512678 Msa1066490:CDS 50.0%
! CCCATTTTCCCTAATCGCCG+AGG + chr7_2:60511825-60511844 Msa1066490:intron 55.0%
CCACACATTGGAGTGACCCA+CGG - chr7_2:60511868-60511887 None:intergenic 55.0%
GGGGCGAGAATTCCACACAT+TGG - chr7_2:60511880-60511899 None:intergenic 55.0%
ATGGTCTCATGTTGCGGGCA+CGG + chr7_2:60511961-60511980 Msa1066490:intron 55.0%
CGGCTTCCATAGCAATGCCA+TGG + chr7_2:60511981-60512000 Msa1066490:intron 55.0%
ACATTGGAGTGACCCACGGC+TGG - chr7_2:60511864-60511883 None:intergenic 60.0%
CCGTGGGTCACTCCAATGTG+TGG + chr7_2:60511865-60511884 Msa1066490:intron 60.0%
GATCGGACTATCGGGCACAC+AGG + chr7_2:60512451-60512470 Msa1066490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 60508744 60512992 60508744 ID=Msa1066490;Name=Msa1066490
chr7_2 mRNA 60508744 60512992 60508744 ID=Msa1066490-mRNA-1;Parent=Msa1066490;Name=Msa1066490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=223|1|1|1|0.83|0.69|13|269|247
chr7_2 exon 60508744 60508936 60508744 ID=Msa1066490-mRNA-1:exon:11888;Parent=Msa1066490-mRNA-1
chr7_2 exon 60509172 60509270 60509172 ID=Msa1066490-mRNA-1:exon:11889;Parent=Msa1066490-mRNA-1
chr7_2 exon 60509726 60509770 60509726 ID=Msa1066490-mRNA-1:exon:11890;Parent=Msa1066490-mRNA-1
chr7_2 exon 60509916 60509982 60509916 ID=Msa1066490-mRNA-1:exon:11891;Parent=Msa1066490-mRNA-1
chr7_2 exon 60510310 60510386 60510310 ID=Msa1066490-mRNA-1:exon:11892;Parent=Msa1066490-mRNA-1
chr7_2 exon 60510524 60510559 60510524 ID=Msa1066490-mRNA-1:exon:11893;Parent=Msa1066490-mRNA-1
chr7_2 exon 60510804 60510859 60510804 ID=Msa1066490-mRNA-1:exon:11894;Parent=Msa1066490-mRNA-1
chr7_2 exon 60510935 60511034 60510935 ID=Msa1066490-mRNA-1:exon:11895;Parent=Msa1066490-mRNA-1
chr7_2 exon 60511140 60511235 60511140 ID=Msa1066490-mRNA-1:exon:11896;Parent=Msa1066490-mRNA-1
chr7_2 exon 60511328 60511417 60511328 ID=Msa1066490-mRNA-1:exon:11897;Parent=Msa1066490-mRNA-1
chr7_2 exon 60512421 60512472 60512421 ID=Msa1066490-mRNA-1:exon:11898;Parent=Msa1066490-mRNA-1
chr7_2 exon 60512634 60512819 60512634 ID=Msa1066490-mRNA-1:exon:11899;Parent=Msa1066490-mRNA-1
chr7_2 exon 60512854 60512992 60512854 ID=Msa1066490-mRNA-1:exon:11900;Parent=Msa1066490-mRNA-1
chr7_2 five_prime_UTR 60508744 60508936 60508744 ID=Msa1066490-mRNA-1:five_prime_utr;Parent=Msa1066490-mRNA-1
chr7_2 five_prime_UTR 60509172 60509201 60509172 ID=Msa1066490-mRNA-1:five_prime_utr;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60509202 60509270 60509202 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60509726 60509770 60509726 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60509916 60509982 60509916 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60510310 60510386 60510310 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60510524 60510559 60510524 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60510804 60510859 60510804 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60510935 60511034 60510935 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60511140 60511235 60511140 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60511328 60511417 60511328 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60512421 60512472 60512421 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 CDS 60512634 60512689 60512634 ID=Msa1066490-mRNA-1:cds;Parent=Msa1066490-mRNA-1
chr7_2 three_prime_UTR 60512690 60512819 60512690 ID=Msa1066490-mRNA-1:three_prime_utr;Parent=Msa1066490-mRNA-1
chr7_2 three_prime_UTR 60512854 60512992 60512854 ID=Msa1066490-mRNA-1:three_prime_utr;Parent=Msa1066490-mRNA-1
Gene Sequence

>Msa1066490

ATGGCTGCCCTGAAACCTGGTGTGATTGCTTTGTTTGATGTTGATGGAACTCTTACAGCTCCAAGGAAGGGGGCTACTCTAGAGATGTTGCAGTTCATACAAGATCTACGAAAGATTGTAACGGTTGGAGTTGTTGGGGGTTCTGATCTTGTAAAGATATCTGAGCAACTTGGTCAGACAGTTACCAATGACTATGATTATTGTTTTTCTGAGAATGGTCTTGTGGCTCATAAGCAAGGACAGCTCATTGGAACTCAGAGCTTGAAGACATTCATTGGGGATGAACAGCTCAAGGAATTTATTAATTTTACGCTTCATTACATTGCTGACTTGGATATCCCTATTAAGAGGGGAACATTTATTGAGTTCCGTAGTGGGATGTTGAATGTGTCACCTATTGGGAGAAACTGTAGCCAAGAAGAAAGAGACGAGTTTGAGAAGTATGACAAGGTTCAGAACATACGCTCAAAAATGGTTTCTATACTTCGTGAGAAGTTTGCTCATCTTAACTTGACATTTTCCATTGGAGGACAGATAAGCTTTGATGTTTTCCCTCAAGGTTGGGATAAAACATACTGCTTGAGATACCTTGATGGTTTCAATGAAATCCACTTTTTTGGTGACAAAACTTACAAGGGTGGAAATGACCATGAAATTTATGAATCTGATCGGACTATCGGGCACACAGTTACCAGCCCTGAAGATACTATCAAGCAGTGTACATCTCTCTTCCTGGGACATTAA

Protein sequence

>Msa1066490

MAALKPGVIALFDVDGTLTAPRKGATLEMLQFIQDLRKIVTVGVVGGSDLVKISEQLGQTVTNDYDYCFSENGLVAHKQGQLIGTQSLKTFIGDEQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVQNIRSKMVSILREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESDRTIGHTVTSPEDTIKQCTSLFLGH*