AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003870 MtrunA17_Chr1g0155371 97.887 284 3 1 1 281 1 284 0.0 573
Msa0003870 MtrunA17_Chr4g0004521 87.179 273 21 2 20 281 7 276 7.44e-160 445
Msa0003870 MtrunA17_Chr4g0027841 75.102 245 52 4 1 241 83 322 1.49e-124 358
Msa0003870 MtrunA17_Chr3g0142511 86.826 167 20 1 115 281 25 189 3.28e-103 298
Msa0003870 MtrunA17_Chr1g0210811 45.902 183 94 2 1 178 3 185 5.95e-47 157
Msa0003870 MtrunA17_Chr7g0243311 38.785 214 125 3 5 214 4 215 3.09e-43 147
Msa0003870 MtrunA17_Chr5g0401801 42.135 178 99 2 5 178 4 181 5.98e-42 144
Msa0003870 MtrunA17_Chr0c02g0489661 35.111 225 141 3 1 223 1 222 1.70e-41 143
Msa0003870 MtrunA17_Chr6g0459741 40.838 191 108 3 6 193 8 196 7.94e-39 136
Msa0003870 MtrunA17_Chr2g0308541 34.348 230 145 5 6 230 9 237 1.26e-38 135
Msa0003870 MtrunA17_Chr8g0360781 35.217 230 143 5 6 230 9 237 1.76e-38 135
Msa0003870 MtrunA17_Chr8g0371571 37.736 212 123 4 5 210 3 211 6.47e-38 134
Msa0003870 MtrunA17_Chr2g0283841 35.681 213 128 4 4 210 2 211 3.37e-35 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003870 AT1G47250.1 78.445 283 53 2 1 281 1 277 6.50e-160 446
Msa0003870 AT5G42790.1 86.134 238 33 0 1 238 1 238 6.88e-159 443
Msa0003870 AT1G53850.1 38.819 237 135 4 1 232 3 234 2.49e-46 155
Msa0003870 AT1G53850.2 38.819 237 135 4 1 232 3 234 2.49e-46 155
Msa0003870 AT3G14290.1 45.355 183 95 2 1 178 3 185 2.51e-46 155
Msa0003870 AT3G22110.1 36.017 236 141 4 5 232 4 237 2.50e-43 148
Msa0003870 AT1G16470.1 36.444 225 138 3 1 223 1 222 2.46e-40 140
Msa0003870 AT1G16470.2 36.444 225 138 3 1 223 1 222 2.46e-40 140
Msa0003870 AT1G79210.1 36.000 225 139 3 1 223 1 222 7.40e-40 139
Msa0003870 AT1G79210.2 36.000 225 139 3 1 223 1 222 7.40e-40 139
Msa0003870 AT1G79210.3 36.000 225 139 3 1 223 1 222 7.40e-40 139
Msa0003870 AT5G35590.1 34.348 230 145 5 6 230 9 237 2.00e-38 135
Msa0003870 AT5G66140.1 38.208 212 122 4 5 210 3 211 4.19e-37 132
Msa0003870 AT2G05840.1 34.348 230 145 5 6 230 9 237 4.44e-37 132
Msa0003870 AT3G51260.1 37.264 212 124 4 5 210 3 211 5.66e-36 129
Msa0003870 AT3G51260.2 37.264 212 124 4 5 210 3 211 6.60e-36 129
Msa0003870 AT2G05840.2 36.181 199 123 3 6 200 9 207 1.44e-35 127
Msa0003870 AT2G27020.1 37.895 190 115 2 6 193 8 196 8.34e-35 126
Msa0003870 AT2G05840.3 36.170 188 116 3 6 189 9 196 1.21e-33 122
Msa0003870 AT2G27020.2 37.895 190 115 2 6 193 110 298 1.81e-33 125
Msa0003870 AT4G15165.1 33.654 208 87 7 5 204 4 168 2.40e-25 100

Find 103 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACTATTTACTGAAATTC+TGG 0.213745 1_1:-6369602 Msa0003870:three_prime_UTR
TGGTGAGCCTTTCCACATTT+TGG 0.215333 1_1:-6370003 Msa0003870:CDS
CGCGAGAACCACGTGAGTTT+TGG 0.220139 1_1:+6373074 None:intergenic
ACAAGCTGCAAAGACATATT+TGG 0.303194 1_1:-6370156 Msa0003870:CDS
TCCTGCTCAGCTGCAGCCTC+AGG 0.321152 1_1:+6369909 None:intergenic
TAACCTAACCTGAGCCTTAT+CGG 0.340591 1_1:+6372855 None:intergenic
ACTGTTATTTGAAAATGAAT+AGG 0.340974 1_1:-6369772 Msa0003870:three_prime_UTR
GCTGCCACAGATCAGGCTTC+TGG 0.352014 1_1:-6369885 Msa0003870:CDS
CGATCATGGAAGCGTCCTTA+TGG 0.372743 1_1:-6370287 Msa0003870:CDS
ATGAGAAGATAGTTCAGAAT+TGG 0.382855 1_1:+6373038 None:intergenic
AAAGAGTAAACAAAAGGAAA+AGG 0.387651 1_1:-6373274 Msa0003870:five_prime_UTR
GTAGCTGGATTAGATGAATC+AGG 0.390011 1_1:-6370251 Msa0003870:CDS
GGCGTTGGACTTCTAGTAGC+TGG 0.403744 1_1:-6370266 Msa0003870:CDS
CGCTTGGGCAGTTGTAATAG+AGG 0.407257 1_1:+6370222 None:intergenic
GCTGCAGCCTCAGGTTCAGC+AGG 0.411570 1_1:+6369918 None:intergenic
TATCAACAATCGGGTCCCTT+TGG 0.415540 1_1:-6369536 Msa0003870:three_prime_UTR
TATTTCTTAATATCAACAAT+CGG 0.423419 1_1:-6369546 Msa0003870:three_prime_UTR
ACCTGAGGCTGCAGCTGAGC+AGG 0.426509 1_1:-6369910 Msa0003870:CDS
CTGGATAAAATGTTGATTGA+AGG 0.429409 1_1:-6369583 Msa0003870:three_prime_UTR
TCATCAGAAGAAGATCTTCA+AGG 0.432131 1_1:-6373019 Msa0003870:CDS
TAGATAAAATTGTAAATAGT+AGG 0.434101 1_1:+6369626 None:intergenic
GCAGGATGCTGCCACAGATC+AGG 0.446173 1_1:-6369892 Msa0003870:CDS
TTAAATTATCAAATCTCCAT+TGG 0.446472 1_1:+6369819 None:intergenic
AAGCAAGGTTCAGCAGCAAT+AGG 0.446969 1_1:-6373105 Msa0003870:CDS
ACCGGCGGGAAGACTCTTCC+AGG 0.447398 1_1:-6373151 Msa0003870:CDS
CATCTTTGATCAGATCTTCC+CGG 0.448900 1_1:+6370102 None:intergenic
CAGATCAAAGTGGTGCTGGT+GGG 0.452356 1_1:-6369860 Msa0003870:CDS
GCCGATCACAAAATCAAAAT+CGG 0.458938 1_1:-6373217 Msa0003870:five_prime_UTR
CCTTGCAAGGTGAAAAGCTC+AGG 0.463589 1_1:-6370058 Msa0003870:CDS
GCATTCAGATCTCATGTAAC+GGG 0.468182 1_1:+6372939 None:intergenic
GATCAGATCTTCCCGGGAGG+AGG 0.468370 1_1:+6370109 None:intergenic
TGGATAAAATGTTGATTGAA+GGG 0.470632 1_1:-6369582 Msa0003870:three_prime_UTR
ACGGCCATCGGCGGTGAGAC+CGG 0.470971 1_1:+6372969 None:intergenic
GGTGCTGGTGGGGCTGACCA+AGG 0.471608 1_1:-6369849 Msa0003870:CDS
ATTTCTTAATATCAACAATC+GGG 0.480176 1_1:-6369545 Msa0003870:three_prime_UTR
GCAGATCAAAGTGGTGCTGG+TGG 0.482449 1_1:-6369861 Msa0003870:CDS
CGTCGTTCAGCTCGCCGATA+AGG 0.485800 1_1:-6372869 Msa0003870:CDS
ATTCAAAATAGTTTCCGCTT+GGG 0.489662 1_1:+6370207 None:intergenic
ACTAGAAGTCCAACGCCATA+AGG 0.491926 1_1:+6370272 None:intergenic
AGGTTTGCACTCAGCGATCA+TGG 0.494067 1_1:-6370301 Msa0003870:CDS
TAAAGAAAAGAGTAAACAAA+AGG 0.496946 1_1:-6373280 Msa0003870:five_prime_UTR
ACAACTTCACAGCCTCCTCC+CGG 0.497935 1_1:-6370121 Msa0003870:CDS
GAATATCAGGCATTTGCAAT+CGG 0.498552 1_1:-6370188 Msa0003870:CDS
CTTCCATGGCGTATTCCACC+TGG 0.500589 1_1:+6373133 None:intergenic
TATTCAAAATAGTTTCCGCT+TGG 0.508568 1_1:+6370206 None:intergenic
ACCATTGCTGTGGTTGGAGT+TGG 0.514251 1_1:-6370023 Msa0003870:CDS
AAATTGTAAATAGTAGGTTC+AGG 0.514635 1_1:+6369632 None:intergenic
TTCAAGGTTGATGATCATAT+CGG 0.515192 1_1:-6373003 Msa0003870:CDS
ATCTTTGATCAGATCTTCCC+GGG 0.521887 1_1:+6370103 None:intergenic
AAGATGCACTCATTGCAACT+AGG 0.529448 1_1:-6370085 Msa0003870:CDS
AGATCAAAGTGGTGCTGGTG+GGG 0.531118 1_1:-6369859 Msa0003870:CDS
GGTGCAGATCAAAGTGGTGC+TGG 0.531835 1_1:-6369864 Msa0003870:CDS
TTTCAAGTTGAGTGTGTCAT+GGG 0.533952 1_1:-6369749 Msa0003870:three_prime_UTR
TGGAAGCGTCCTTATGGCGT+TGG 0.534162 1_1:-6370281 Msa0003870:CDS
AACCACAGCAATGGTGCATA+CGG 0.536605 1_1:+6370031 None:intergenic
TTGTTTCTGAAATTCATCCA+TGG 0.537112 1_1:-6369685 Msa0003870:three_prime_UTR
CTCTATTACAACTGCCCAAG+CGG 0.540260 1_1:-6370221 Msa0003870:CDS
ACGAGTCTACCAACGGGAAG+CGG 0.541672 1_1:+6372889 None:intergenic
GTTTCAAGTTGAGTGTGTCA+TGG 0.550390 1_1:-6369750 Msa0003870:three_prime_UTR
AGATGCACTCATTGCAACTA+GGG 0.552459 1_1:-6370084 Msa0003870:CDS
TCAGCTCGCCGATAAGGCTC+AGG 0.552948 1_1:-6372863 Msa0003870:intron
CATATCGGCGTTGCCATCGC+CGG 0.553468 1_1:-6372988 Msa0003870:CDS
AATCGAAACAATGTACCAAA+GGG 0.553783 1_1:+6369521 None:intergenic
GTATGCACCATTGCTGTGGT+TGG 0.557714 1_1:-6370029 Msa0003870:CDS
ATCGCCGGTCTCACCGCCGA+TGG 0.557766 1_1:-6372973 Msa0003870:CDS
ACCTTGCTTAACTGCTTCCA+TGG 0.560856 1_1:+6373119 None:intergenic
TGCATTCAGATCTCATGTAA+CGG 0.564752 1_1:+6372938 None:intergenic
CGACGTAACAACATGGTCAC+CGG 0.568536 1_1:-6373169 Msa0003870:CDS
AATTTAAGATCCAGTACTTG+AGG 0.570467 1_1:-6369803 Msa0003870:three_prime_UTR
AAATCGAAACAATGTACCAA+AGG 0.571051 1_1:+6369520 None:intergenic
TGAACGACGAGTCTACCAAC+GGG 0.572203 1_1:+6372883 None:intergenic
TAGCTGGATTAGATGAATCA+GGG 0.572392 1_1:-6370250 Msa0003870:CDS
ACGGGAAAGAACACGGCCAT+CGG 0.576909 1_1:+6372957 None:intergenic
CAGTTTCCTGATCCAAAATG+TGG 0.582560 1_1:+6369991 None:intergenic
TATGAATCTCCGCTTCCCGT+TGG 0.585267 1_1:-6372898 Msa0003870:CDS
AGCTGCACCTGCTGAACCTG+AGG 0.586152 1_1:-6369925 Msa0003870:CDS
GGATAAAATGTTGATTGAAG+GGG 0.586164 1_1:-6369581 Msa0003870:three_prime_UTR
CAACTTCACAGCCTCCTCCC+GGG 0.586785 1_1:-6370120 Msa0003870:CDS
TGACCAAGGTGGTTCTCCAA+TGG 0.586988 1_1:-6369835 Msa0003870:CDS
ATCGGCGGTGAGACCGGCGA+TGG 0.592757 1_1:+6372975 None:intergenic
TCCTGATCCAAAATGTGGAA+AGG 0.593184 1_1:+6369996 None:intergenic
ACCAACTCCAACCACAGCAA+TGG 0.594452 1_1:+6370022 None:intergenic
AAGTTCACAGTGATCAGCCA+TGG 0.599270 1_1:+6369668 None:intergenic
GCTGGTGGGGCTGACCAAGG+TGG 0.603851 1_1:-6369846 Msa0003870:CDS
CTTCCAGGTGGAATACGCCA+TGG 0.612270 1_1:-6373136 Msa0003870:CDS
CTCCGTATGCACCATTGCTG+TGG 0.615712 1_1:-6370033 Msa0003870:CDS
GCAACTAGGGAGTCCTTGCA+AGG 0.618439 1_1:-6370071 Msa0003870:CDS
TCTCCATTGGAGAACCACCT+TGG 0.619130 1_1:+6369832 None:intergenic
ACCTGGAAGAGTCTTCCCGC+CGG 0.625765 1_1:+6373150 None:intergenic
GTAACAACATGGTCACCGGC+GGG 0.626802 1_1:-6373165 Msa0003870:CDS
CGTAACAACATGGTCACCGG+CGG 0.638962 1_1:-6373166 Msa0003870:CDS
GGAAAGAACACGGCCATCGG+CGG 0.645115 1_1:+6372960 None:intergenic
TGCACCAGAAGCCTGATCTG+TGG 0.645294 1_1:+6369881 None:intergenic
TCATGTAACGGGAAAGAACA+CGG 0.645339 1_1:+6372950 None:intergenic
CTGAACGACGAGTCTACCAA+CGG 0.653690 1_1:+6372882 None:intergenic
ACGATACCGACGTAACAACA+TGG 0.654506 1_1:-6373176 Msa0003870:CDS
GCCATGGAAGCAGTTAAGCA+AGG 0.656151 1_1:-6373120 Msa0003870:CDS
AGCTGGATTAGATGAATCAG+GGG 0.660204 1_1:-6370249 Msa0003870:CDS
CGGTGACCATGTTGTTACGT+CGG 0.692398 1_1:+6373170 None:intergenic
GCTTCTGGTGCAGATCAAAG+TGG 0.697173 1_1:-6369870 Msa0003870:CDS
GGCGGGAAGACTCTTCCAGG+TGG 0.706418 1_1:-6373148 Msa0003870:CDS
TCTCCGATCCAAAACTCACG+TGG 0.728289 1_1:-6373082 Msa0003870:CDS
TTTGATCAGATCTTCCCGGG+AGG 0.729135 1_1:+6370106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAAATTAAGTAATTTTAA+TGG - chr1_1:6370073-6370092 Msa0003870:CDS 10.0%
!! AAATAATAACAAAATCAAAC+AGG + chr1_1:6370806-6370825 None:intergenic 15.0%
!!! ACTATTTTGTATACTTAATA+TGG - chr1_1:6371285-6371304 Msa0003870:intron 15.0%
!! ATTCAATAAACTAAAACATT+TGG - chr1_1:6372267-6372286 Msa0003870:intron 15.0%
!! TAGATAAAATTGTAAATAGT+AGG + chr1_1:6373181-6373200 None:intergenic 15.0%
!! TATTTCTTAATATCAACAAT+CGG - chr1_1:6373258-6373277 Msa0003870:five_prime_UTR 15.0%
!! TAAAGAAAAGAGTAAACAAA+AGG - chr1_1:6369524-6369543 Msa0003870:three_prime_UTR 20.0%
!! TTTAACTCAGTAATTCAATT+AGG - chr1_1:6370051-6370070 Msa0003870:CDS 20.0%
!! AAATACAGTGTTAACAAAAA+GGG + chr1_1:6370220-6370239 None:intergenic 20.0%
!! AAACATTAGAGAATACATTT+CGG + chr1_1:6370628-6370647 None:intergenic 20.0%
!! TTCTCTAATGTTTACTATAT+AGG - chr1_1:6370635-6370654 Msa0003870:intron 20.0%
!! ATATAGAAACAGCATAAATA+GGG + chr1_1:6372212-6372231 None:intergenic 20.0%
!! TATATAGAAACAGCATAAAT+AGG + chr1_1:6372213-6372232 None:intergenic 20.0%
!!! GTGTTTTATTAATAGAAAGT+TGG - chr1_1:6372340-6372359 Msa0003870:intron 20.0%
!! ATATTACATGGAAAAGAATA+AGG - chr1_1:6372409-6372428 Msa0003870:intron 20.0%
!! CAAAATTACATCATAAATAC+TGG + chr1_1:6372477-6372496 None:intergenic 20.0%
!!! ATTTATGATGTAATTTTGAG+TGG - chr1_1:6372479-6372498 Msa0003870:intron 20.0%
!! TTAAATTATCAAATCTCCAT+TGG + chr1_1:6372988-6373007 None:intergenic 20.0%
!!! ACTGTTATTTGAAAATGAAT+AGG - chr1_1:6373032-6373051 Msa0003870:CDS 20.0%
!! ATTTCTTAATATCAACAATC+GGG - chr1_1:6373259-6373278 Msa0003870:five_prime_UTR 20.0%
! AAAGAGTAAACAAAAGGAAA+AGG - chr1_1:6369530-6369549 Msa0003870:three_prime_UTR 25.0%
! TTGTTCGAATTATTCGAATT+AGG - chr1_1:6369997-6370016 Msa0003870:CDS 25.0%
! TGTTCGAATTATTCGAATTA+GGG - chr1_1:6369998-6370017 Msa0003870:CDS 25.0%
!!! GATTTGATTTGTTATGTTTG+TGG - chr1_1:6370117-6370136 Msa0003870:CDS 25.0%
! TAGTCGAGATTATTTACTTT+AGG - chr1_1:6370159-6370178 Msa0003870:CDS 25.0%
! CAAATACAGTGTTAACAAAA+AGG + chr1_1:6370221-6370240 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1_1:6370331-6370350 Msa0003870:intron 25.0%
! AAAAAATAAGCCAATCCAAA+CGG - chr1_1:6370443-6370462 Msa0003870:intron 25.0%
!! TTTCAGTTTTCAACTTTTGT+TGG - chr1_1:6370480-6370499 Msa0003870:intron 25.0%
!! AAACGTTTGAAACTATGTTT+AGG - chr1_1:6370587-6370606 Msa0003870:intron 25.0%
! AAAATACTATGATGCTTCTA+TGG - chr1_1:6370762-6370781 Msa0003870:intron 25.0%
!!! CATCAAAAAGAGTATGATTT+TGG + chr1_1:6371031-6371050 None:intergenic 25.0%
!! ATCATACTCTTTTTGATGTT+TGG - chr1_1:6371033-6371052 Msa0003870:intron 25.0%
! AGGTACAAAAATTATTTCAC+AGG + chr1_1:6371113-6371132 None:intergenic 25.0%
! ATTTATATACTTCTGGGTAT+AGG + chr1_1:6371205-6371224 None:intergenic 25.0%
! ACACACATTTATATACTTCT+GGG + chr1_1:6371211-6371230 None:intergenic 25.0%
! TGTATACTTAATATGGAAGT+AGG - chr1_1:6371292-6371311 Msa0003870:intron 25.0%
! GTATACTTAATATGGAAGTA+GGG - chr1_1:6371293-6371312 Msa0003870:intron 25.0%
!!! TGTAAATGTTGTTTTGATAG+TGG - chr1_1:6371386-6371405 Msa0003870:intron 25.0%
!!! TGACAGTCATTTTGTATTTA+AGG + chr1_1:6371648-6371667 None:intergenic 25.0%
!! TGATTTGACTTAACTCTTAT+TGG - chr1_1:6372117-6372136 Msa0003870:intron 25.0%
!! GATTTGACTTAACTCTTATT+GGG - chr1_1:6372118-6372137 Msa0003870:intron 25.0%
!!! TAAAGTGTTAACAACACTTT+TGG - chr1_1:6372174-6372193 Msa0003870:intron 25.0%
! TATAGAAACAGCATAAATAG+GGG + chr1_1:6372211-6372230 None:intergenic 25.0%
! TTGAATGAATTAAATAGACC+AGG + chr1_1:6372253-6372272 None:intergenic 25.0%
!! ATTTGGTTAGTTAATCAACA+TGG - chr1_1:6372284-6372303 Msa0003870:intron 25.0%
! TTATTAATAGAAAGTTGGAC+AGG - chr1_1:6372345-6372364 Msa0003870:intron 25.0%
! TATTAATAGAAAGTTGGACA+GGG - chr1_1:6372346-6372365 Msa0003870:intron 25.0%
! AAATTGTAAATAGTAGGTTC+AGG + chr1_1:6373175-6373194 None:intergenic 25.0%
! GATACTATTTACTGAAATTC+TGG - chr1_1:6373202-6373221 Msa0003870:exon 25.0%
!! TGGATAAAATGTTGATTGAA+GGG - chr1_1:6373222-6373241 Msa0003870:five_prime_UTR 25.0%
!!! TCCGATTTTGATTTTGTGAT+CGG + chr1_1:6369591-6369610 None:intergenic 30.0%
ATGAGAAGATAGTTCAGAAT+TGG + chr1_1:6369769-6369788 None:intergenic 30.0%
!! TTCAAGGTTGATGATCATAT+CGG - chr1_1:6369801-6369820 Msa0003870:three_prime_UTR 30.0%
AAACAGGTAAAAACGGAAAA+CGG + chr1_1:6369979-6369998 None:intergenic 30.0%
TTCGAACAAACAGGTAAAAA+CGG + chr1_1:6369986-6370005 None:intergenic 30.0%
TTCGAATAATTCGAACAAAC+AGG + chr1_1:6369995-6370014 None:intergenic 30.0%
!!! AATTGTAGCTAGGGTTTTTT+AGG - chr1_1:6370027-6370046 Msa0003870:CDS 30.0%
!!! ATTGTAGCTAGGGTTTTTTA+GGG - chr1_1:6370028-6370047 Msa0003870:CDS 30.0%
TGACAGTGATTAGAATGAAA+TGG - chr1_1:6370239-6370258 Msa0003870:CDS 30.0%
GACAGTGATTAGAATGAAAT+GGG - chr1_1:6370240-6370259 Msa0003870:CDS 30.0%
CAAAAATAAGCCAATCCAAA+TGG + chr1_1:6370283-6370302 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+GGG - chr1_1:6370444-6370463 Msa0003870:intron 30.0%
TAATTGTGATTGAGAGAAGA+TGG - chr1_1:6370536-6370555 Msa0003870:intron 30.0%
!! ATCTAGAGGGAGTATATTTT+CGG - chr1_1:6370564-6370583 Msa0003870:intron 30.0%
TTGAATGTCTTGAGAATTTG+AGG - chr1_1:6370824-6370843 Msa0003870:intron 30.0%
!!! GAGAATTTGAGGTTTTTAGT+TGG - chr1_1:6370835-6370854 Msa0003870:intron 30.0%
!! GTATGATTTTGGCAAAATCA+CGG + chr1_1:6371020-6371039 None:intergenic 30.0%
! CTTTTTGATGTTTGGTTGTT+TGG - chr1_1:6371041-6371060 Msa0003870:intron 30.0%
CACACACATTTATATACTTC+TGG + chr1_1:6371212-6371231 None:intergenic 30.0%
! CAGAAGTATATAAATGTGTG+TGG - chr1_1:6371210-6371229 Msa0003870:intron 30.0%
!! ATCACTTTTGAGCTGTTATT+TGG - chr1_1:6371257-6371276 Msa0003870:intron 30.0%
CATATGATAGAGATTAGAGA+CGG - chr1_1:6371440-6371459 Msa0003870:intron 30.0%
TACGGTGTAGTTATTCAAAT+TGG - chr1_1:6371471-6371490 Msa0003870:intron 30.0%
ACGGTGTAGTTATTCAAATT+GGG - chr1_1:6371472-6371491 Msa0003870:intron 30.0%
!! TGTTTTGTTACGATCCATTA+TGG - chr1_1:6371537-6371556 Msa0003870:intron 30.0%
TATCTTACTTTCATTCTCTG+TGG - chr1_1:6371605-6371624 Msa0003870:intron 30.0%
TGATTTACTTAGCATTGTAG+TGG - chr1_1:6371746-6371765 Msa0003870:intron 30.0%
!! TAACTTGCTTGTAGAATAAC+TGG - chr1_1:6372039-6372058 Msa0003870:intron 30.0%
ATAGTTACTATATGTGAACC+TGG - chr1_1:6372232-6372251 Msa0003870:intron 30.0%
ATCTTGTCTTGCATATTACA+TGG - chr1_1:6372397-6372416 Msa0003870:intron 30.0%
ATTCAAAATAGTTTCCGCTT+GGG + chr1_1:6372600-6372619 None:intergenic 30.0%
TATTCAAAATAGTTTCCGCT+TGG + chr1_1:6372601-6372620 None:intergenic 30.0%
!! CGGAAACTATTTTGAATATC+AGG - chr1_1:6372603-6372622 Msa0003870:intron 30.0%
!!! TTGATACTTTTGAGATTGTG+AGG - chr1_1:6372848-6372867 Msa0003870:intron 30.0%
!!! TGATACTTTTGAGATTGTGA+GGG - chr1_1:6372849-6372868 Msa0003870:intron 30.0%
! AATTTAAGATCCAGTACTTG+AGG - chr1_1:6373001-6373020 Msa0003870:CDS 30.0%
!! TTGTTTCTGAAATTCATCCA+TGG - chr1_1:6373119-6373138 Msa0003870:CDS 30.0%
! CTGGATAAAATGTTGATTGA+AGG - chr1_1:6373221-6373240 Msa0003870:five_prime_UTR 30.0%
! GGATAAAATGTTGATTGAAG+GGG - chr1_1:6373223-6373242 Msa0003870:five_prime_UTR 30.0%
AATCGAAACAATGTACCAAA+GGG + chr1_1:6373286-6373305 None:intergenic 30.0%
AAATCGAAACAATGTACCAA+AGG + chr1_1:6373287-6373306 None:intergenic 30.0%
GCCGATCACAAAATCAAAAT+CGG - chr1_1:6369587-6369606 Msa0003870:three_prime_UTR 35.0%
TCATCAGAAGAAGATCTTCA+AGG - chr1_1:6369785-6369804 Msa0003870:three_prime_UTR 35.0%
TGCATTCAGATCTCATGTAA+CGG + chr1_1:6369869-6369888 None:intergenic 35.0%
!!! AGGGTTTTGAAATTGTAGCT+AGG - chr1_1:6370017-6370036 Msa0003870:CDS 35.0%
!!! GGGTTTTGAAATTGTAGCTA+GGG - chr1_1:6370018-6370037 Msa0003870:CDS 35.0%
!! ACTTTAGGATCTTAACTGAG+TGG - chr1_1:6370174-6370193 Msa0003870:CDS 35.0%
CAGTGTTAACAAAAAGGGTT+TGG + chr1_1:6370215-6370234 None:intergenic 35.0%
TGTAAGATTCAGTGTCCATT+TGG - chr1_1:6370265-6370284 Msa0003870:CDS 35.0%
GAAAACTGAAACAGACACTA+AGG + chr1_1:6370471-6370490 None:intergenic 35.0%
! AGTTTTCAACTTTTGTTGGC+TGG - chr1_1:6370484-6370503 Msa0003870:intron 35.0%
AGAAGATGGAATCAATCTAG+AGG - chr1_1:6370550-6370569 Msa0003870:intron 35.0%
GAAGATGGAATCAATCTAGA+GGG - chr1_1:6370551-6370570 Msa0003870:intron 35.0%
! CTAATGACACGTTCTACTTT+TGG + chr1_1:6370681-6370700 None:intergenic 35.0%
!! TCATTAGTTTCCTCTCCTTT+TGG - chr1_1:6370694-6370713 Msa0003870:intron 35.0%
!! TCTCCTTTTGGTCTTTTTTG+CGG - chr1_1:6370706-6370725 Msa0003870:intron 35.0%
TATGATGCTTCTATGGTGTT+TGG - chr1_1:6370769-6370788 Msa0003870:intron 35.0%
CGGTAAGTTTGACAAAATCA+CGG - chr1_1:6370949-6370968 Msa0003870:intron 35.0%
GGTAAGTTTGACAAAATCAC+GGG - chr1_1:6370950-6370969 Msa0003870:intron 35.0%
ATATACTTCTGGGTATAGGT+TGG + chr1_1:6371201-6371220 None:intergenic 35.0%
AGTTCCGTTGACATTCATTA+GGG + chr1_1:6371511-6371530 None:intergenic 35.0%
GATCCATTATGGATGTTCTA+GGG - chr1_1:6371548-6371567 Msa0003870:intron 35.0%
ATCCATTATGGATGTTCTAG+GGG - chr1_1:6371549-6371568 Msa0003870:intron 35.0%
TTCACTTTCCCATTACTATG+AGG + chr1_1:6371579-6371598 None:intergenic 35.0%
ATGTCATTCTTTGATGCATC+TGG - chr1_1:6371679-6371698 Msa0003870:intron 35.0%
! TCTTCTCTTTCAAGGTTTTG+AGG - chr1_1:6371706-6371725 Msa0003870:intron 35.0%
ATGCATAGAGAAATCCTGAA+GGG - chr1_1:6371884-6371903 Msa0003870:intron 35.0%
!! ATGATGTAATTTTGAGTGGC+AGG - chr1_1:6372483-6372502 Msa0003870:intron 35.0%
! TAGCTGGATTAGATGAATCA+GGG - chr1_1:6372554-6372573 Msa0003870:intron 35.0%
GAATATCAGGCATTTGCAAT+CGG - chr1_1:6372616-6372635 Msa0003870:intron 35.0%
ACAAGCTGCAAAGACATATT+TGG - chr1_1:6372648-6372667 Msa0003870:intron 35.0%
! GTTTTTAACACCTCAAGTAC+TGG + chr1_1:6373014-6373033 None:intergenic 35.0%
!! TTTCAAGTTGAGTGTGTCAT+GGG - chr1_1:6373055-6373074 Msa0003870:CDS 35.0%
! TCATGTAACGGGAAAGAACA+CGG + chr1_1:6369857-6369876 None:intergenic 40.0%
GCATTCAGATCTCATGTAAC+GGG + chr1_1:6369868-6369887 None:intergenic 40.0%
! TAACCTAACCTGAGCCTTAT+CGG + chr1_1:6369952-6369971 None:intergenic 40.0%
! CTTAACTGAGTGGCTCATTT+TGG - chr1_1:6370184-6370203 Msa0003870:CDS 40.0%
GATTCAGTGTCCATTTGGAT+TGG - chr1_1:6370270-6370289 Msa0003870:CDS 40.0%
GCAAAAAAGACCAAAAGGAG+AGG + chr1_1:6370707-6370726 None:intergenic 40.0%
!! CTCCTTTTGGTCTTTTTTGC+GGG - chr1_1:6370707-6370726 Msa0003870:intron 40.0%
!! TCCTTTTGGTCTTTTTTGCG+GGG - chr1_1:6370708-6370727 Msa0003870:intron 40.0%
! TCATAGTATTTTGCCTACCC+AGG + chr1_1:6370754-6370773 None:intergenic 40.0%
!!! GTTTGCTGACTCTTGTTTTC+TGG - chr1_1:6370899-6370918 Msa0003870:intron 40.0%
!! GACTTGTTGCTTGTGTGAAA+TGG - chr1_1:6370926-6370945 Msa0003870:intron 40.0%
! TTGTTGCTTGTGTGAAATGG+CGG - chr1_1:6370929-6370948 Msa0003870:intron 40.0%
CGGTTGGCAAAAACTAAGTT+TGG + chr1_1:6371000-6371019 None:intergenic 40.0%
!! GATTTTGGCAAAATCACGGT+TGG + chr1_1:6371016-6371035 None:intergenic 40.0%
TGTCTTCTTGACAAACACGA+CGG + chr1_1:6371136-6371155 None:intergenic 40.0%
TAATATGGAAGTAGGGAGAC+TGG - chr1_1:6371300-6371319 Msa0003870:intron 40.0%
TTAGAGACGGAGTTAGACTA+CGG - chr1_1:6371453-6371472 Msa0003870:intron 40.0%
TGCACCCTAATGAATGTCAA+CGG - chr1_1:6371504-6371523 Msa0003870:intron 40.0%
CAGTTCCGTTGACATTCATT+AGG + chr1_1:6371512-6371531 None:intergenic 40.0%
CGATCCATTATGGATGTTCT+AGG - chr1_1:6371547-6371566 Msa0003870:intron 40.0%
TACCCCTAGAACATCCATAA+TGG + chr1_1:6371554-6371573 None:intergenic 40.0%
CTTACTTTCATTCTCTGTGG+AGG - chr1_1:6371608-6371627 Msa0003870:intron 40.0%
!!! TCTCTTTCAAGGTTTTGAGG+AGG - chr1_1:6371709-6371728 Msa0003870:intron 40.0%
!!! CTCTTTCAAGGTTTTGAGGA+GGG - chr1_1:6371710-6371729 Msa0003870:intron 40.0%
ATTGTCTAAACTGTCGTGAG+AGG - chr1_1:6371808-6371827 Msa0003870:intron 40.0%
CATGCATAGAGAAATCCTGA+AGG - chr1_1:6371883-6371902 Msa0003870:intron 40.0%
TGCATAGAGAAATCCTGAAG+GGG - chr1_1:6371885-6371904 Msa0003870:intron 40.0%
TACGCTGTTGTGTTGTCTTA+TGG - chr1_1:6371978-6371997 Msa0003870:intron 40.0%
TGTTGTCTTATGGTGTGAAG+TGG - chr1_1:6371988-6372007 Msa0003870:intron 40.0%
TGTAGAATAACTGGCTGAAC+AGG - chr1_1:6372048-6372067 Msa0003870:intron 40.0%
AAACAGCATAAATAGGGGAG+GGG + chr1_1:6372206-6372225 None:intergenic 40.0%
GAAACAGCATAAATAGGGGA+GGG + chr1_1:6372207-6372226 None:intergenic 40.0%
AGAAACAGCATAAATAGGGG+AGG + chr1_1:6372208-6372227 None:intergenic 40.0%
TAATAGAAAGTTGGACAGGG+TGG - chr1_1:6372349-6372368 Msa0003870:intron 40.0%
AATAGAAAGTTGGACAGGGT+GGG - chr1_1:6372350-6372369 Msa0003870:intron 40.0%
! GTAGCTGGATTAGATGAATC+AGG - chr1_1:6372553-6372572 Msa0003870:intron 40.0%
! AGCTGGATTAGATGAATCAG+GGG - chr1_1:6372555-6372574 Msa0003870:intron 40.0%
ATCTTTGATCAGATCTTCCC+GGG + chr1_1:6372704-6372723 None:intergenic 40.0%
CATCTTTGATCAGATCTTCC+CGG + chr1_1:6372705-6372724 None:intergenic 40.0%
AAGATGCACTCATTGCAACT+AGG - chr1_1:6372719-6372738 Msa0003870:intron 40.0%
AGATGCACTCATTGCAACTA+GGG - chr1_1:6372720-6372739 Msa0003870:intron 40.0%
TCCTGATCCAAAATGTGGAA+AGG + chr1_1:6372811-6372830 None:intergenic 40.0%
CAGTTTCCTGATCCAAAATG+TGG + chr1_1:6372816-6372835 None:intergenic 40.0%
!!! TACTTTTGAGATTGTGAGGG+AGG - chr1_1:6372852-6372871 Msa0003870:intron 40.0%
!! GTTTCAAGTTGAGTGTGTCA+TGG - chr1_1:6373054-6373073 Msa0003870:CDS 40.0%
ACGATACCGACGTAACAACA+TGG - chr1_1:6369628-6369647 Msa0003870:three_prime_UTR 45.0%
ACCTTGCTTAACTGCTTCCA+TGG + chr1_1:6369688-6369707 None:intergenic 45.0%
AAGCAAGGTTCAGCAGCAAT+AGG - chr1_1:6369699-6369718 Msa0003870:three_prime_UTR 45.0%
!!! GAACCACGTGAGTTTTGGAT+CGG + chr1_1:6369728-6369747 None:intergenic 45.0%
!! CCTTTTGGTCTTTTTTGCGG+GGG - chr1_1:6370709-6370728 Msa0003870:intron 45.0%
GTACAGAAGTTGTCCAACCT+GGG - chr1_1:6370734-6370753 Msa0003870:intron 45.0%
! AGTATTTTGCCTACCCAGGT+TGG + chr1_1:6370750-6370769 None:intergenic 45.0%
AGTGTCTCTGTTAGTGACTG+TGG - chr1_1:6370861-6370880 Msa0003870:intron 45.0%
AGGGGTAGACCTCATAGTAA+TGG - chr1_1:6371567-6371586 Msa0003870:intron 45.0%
GGGGTAGACCTCATAGTAAT+GGG - chr1_1:6371568-6371587 Msa0003870:intron 45.0%
CTGGAACGTCTTCTCTTTCA+AGG - chr1_1:6371698-6371717 Msa0003870:intron 45.0%
!! TAGTGGTCTATCGACTCGAT+AGG - chr1_1:6371763-6371782 Msa0003870:intron 45.0%
AAACTGTCGTGAGAGGCTAT+TGG - chr1_1:6371815-6371834 Msa0003870:intron 45.0%
GCATAGAGAAATCCTGAAGG+GGG - chr1_1:6371886-6371905 Msa0003870:intron 45.0%
!! CAAAAGTATTAGCCCCCTTC+AGG + chr1_1:6371901-6371920 None:intergenic 45.0%
AACAGCATAAATAGGGGAGG+GGG + chr1_1:6372205-6372224 None:intergenic 45.0%
ACTAGAAGTCCAACGCCATA+AGG + chr1_1:6372535-6372554 None:intergenic 45.0%
CTCTATTACAACTGCCCAAG+CGG - chr1_1:6372583-6372602 Msa0003870:intron 45.0%
AACCACAGCAATGGTGCATA+CGG + chr1_1:6372776-6372795 None:intergenic 45.0%
! TGGTGAGCCTTTCCACATTT+TGG - chr1_1:6372801-6372820 Msa0003870:intron 45.0%
! GCCTTTCCACATTTTGGATC+AGG - chr1_1:6372807-6372826 Msa0003870:intron 45.0%
AAGTTCACAGTGATCAGCCA+TGG + chr1_1:6373139-6373158 None:intergenic 45.0%
TATCAACAATCGGGTCCCTT+TGG - chr1_1:6373268-6373287 Msa0003870:five_prime_UTR 45.0%
CGGTGACCATGTTGTTACGT+CGG + chr1_1:6369637-6369656 None:intergenic 50.0%
CGACGTAACAACATGGTCAC+CGG - chr1_1:6369635-6369654 Msa0003870:three_prime_UTR 50.0%
GCCATGGAAGCAGTTAAGCA+AGG - chr1_1:6369684-6369703 Msa0003870:three_prime_UTR 50.0%
TCTCCGATCCAAAACTCACG+TGG - chr1_1:6369722-6369741 Msa0003870:three_prime_UTR 50.0%
TATGAATCTCCGCTTCCCGT+TGG - chr1_1:6369906-6369925 Msa0003870:CDS 50.0%
TGAACGACGAGTCTACCAAC+GGG + chr1_1:6369924-6369943 None:intergenic 50.0%
CTGAACGACGAGTCTACCAA+CGG + chr1_1:6369925-6369944 None:intergenic 50.0%
CACTAAGGACCCGTTTGGAT+TGG + chr1_1:6370456-6370475 None:intergenic 50.0%
ACAGACACTAAGGACCCGTT+TGG + chr1_1:6370461-6370480 None:intergenic 50.0%
CCCCCGCAAAAAAGACCAAA+AGG + chr1_1:6370712-6370731 None:intergenic 50.0%
!!! TTTGGTCTTTTTTGCGGGGG+AGG - chr1_1:6370712-6370731 Msa0003870:intron 50.0%
GGTACAGAAGTTGTCCAACC+TGG - chr1_1:6370733-6370752 Msa0003870:intron 50.0%
AGAAGTTGTCCAACCTGGGT+AGG - chr1_1:6370738-6370757 Msa0003870:intron 50.0%
GTCTCTGTTAGTGACTGTGG+TGG - chr1_1:6370864-6370883 Msa0003870:intron 50.0%
CTTCTTGACAAACACGACGG+AGG + chr1_1:6371133-6371152 None:intergenic 50.0%
!!! GGTTTTGAGGAGGGAAACAG+TGG - chr1_1:6371719-6371738 Msa0003870:intron 50.0%
AAAGTTGGACAGGGTGGGTA+TGG - chr1_1:6372355-6372374 Msa0003870:intron 50.0%
AAGTTGGACAGGGTGGGTAT+GGG - chr1_1:6372356-6372375 Msa0003870:intron 50.0%
AGGTTTGCACTCAGCGATCA+TGG - chr1_1:6372503-6372522 Msa0003870:intron 50.0%
!! CGATCATGGAAGCGTCCTTA+TGG - chr1_1:6372517-6372536 Msa0003870:intron 50.0%
CGCTTGGGCAGTTGTAATAG+AGG + chr1_1:6372585-6372604 None:intergenic 50.0%
TTTGATCAGATCTTCCCGGG+AGG + chr1_1:6372701-6372720 None:intergenic 50.0%
! CCTGAGCTTTTCACCTTGCA+AGG + chr1_1:6372749-6372768 None:intergenic 50.0%
CCTTGCAAGGTGAAAAGCTC+AGG - chr1_1:6372746-6372765 Msa0003870:intron 50.0%
GTATGCACCATTGCTGTGGT+TGG - chr1_1:6372775-6372794 Msa0003870:intron 50.0%
ACCATTGCTGTGGTTGGAGT+TGG - chr1_1:6372781-6372800 Msa0003870:intron 50.0%
ACCAACTCCAACCACAGCAA+TGG + chr1_1:6372785-6372804 None:intergenic 50.0%
GCTTCTGGTGCAGATCAAAG+TGG - chr1_1:6372934-6372953 Msa0003870:CDS 50.0%
!! CAGATCAAAGTGGTGCTGGT+GGG - chr1_1:6372944-6372963 Msa0003870:CDS 50.0%
!! AGATCAAAGTGGTGCTGGTG+GGG - chr1_1:6372945-6372964 Msa0003870:CDS 50.0%
TGACCAAGGTGGTTCTCCAA+TGG - chr1_1:6372969-6372988 Msa0003870:CDS 50.0%
TCTCCATTGGAGAACCACCT+TGG + chr1_1:6372975-6372994 None:intergenic 50.0%
CGTAACAACATGGTCACCGG+CGG - chr1_1:6369638-6369657 Msa0003870:three_prime_UTR 55.0%
GTAACAACATGGTCACCGGC+GGG - chr1_1:6369639-6369658 Msa0003870:three_prime_UTR 55.0%
CTTCCAGGTGGAATACGCCA+TGG - chr1_1:6369668-6369687 Msa0003870:three_prime_UTR 55.0%
CTTCCATGGCGTATTCCACC+TGG + chr1_1:6369674-6369693 None:intergenic 55.0%
! CGCGAGAACCACGTGAGTTT+TGG + chr1_1:6369733-6369752 None:intergenic 55.0%
ACGGGAAAGAACACGGCCAT+CGG + chr1_1:6369850-6369869 None:intergenic 55.0%
ACGAGTCTACCAACGGGAAG+CGG + chr1_1:6369918-6369937 None:intergenic 55.0%
TCGCCGATAAGGCTCAGGTT+AGG - chr1_1:6369946-6369965 Msa0003870:CDS 55.0%
GAAGTAGGGAGACTGGTGTG+CGG - chr1_1:6371307-6371326 Msa0003870:intron 55.0%
AGTTGGACAGGGTGGGTATG+GGG - chr1_1:6372357-6372376 Msa0003870:intron 55.0%
!! TGGAAGCGTCCTTATGGCGT+TGG - chr1_1:6372523-6372542 Msa0003870:intron 55.0%
! GGCGTTGGACTTCTAGTAGC+TGG - chr1_1:6372538-6372557 Msa0003870:intron 55.0%
ACAACTTCACAGCCTCCTCC+CGG - chr1_1:6372683-6372702 Msa0003870:intron 55.0%
GCAACTAGGGAGTCCTTGCA+AGG - chr1_1:6372733-6372752 Msa0003870:intron 55.0%
CTCCGTATGCACCATTGCTG+TGG - chr1_1:6372771-6372790 Msa0003870:intron 55.0%
TGCACCAGAAGCCTGATCTG+TGG + chr1_1:6372926-6372945 None:intergenic 55.0%
GGTGCAGATCAAAGTGGTGC+TGG - chr1_1:6372940-6372959 Msa0003870:CDS 55.0%
! GCAGATCAAAGTGGTGCTGG+TGG - chr1_1:6372943-6372962 Msa0003870:CDS 55.0%
ACCTGGAAGAGTCTTCCCGC+CGG + chr1_1:6369657-6369676 None:intergenic 60.0%
CATATCGGCGTTGCCATCGC+CGG - chr1_1:6369816-6369835 Msa0003870:exon 60.0%
GGAAAGAACACGGCCATCGG+CGG + chr1_1:6369847-6369866 None:intergenic 60.0%
CGTCGTTCAGCTCGCCGATA+AGG - chr1_1:6369935-6369954 Msa0003870:CDS 60.0%
TCAGCTCGCCGATAAGGCTC+AGG - chr1_1:6369941-6369960 Msa0003870:CDS 60.0%
GTTGGACAGGGTGGGTATGG+GGG - chr1_1:6372358-6372377 Msa0003870:intron 60.0%
TTGGACAGGGTGGGTATGGG+GGG - chr1_1:6372359-6372378 Msa0003870:intron 60.0%
CAACTTCACAGCCTCCTCCC+GGG - chr1_1:6372684-6372703 Msa0003870:intron 60.0%
GATCAGATCTTCCCGGGAGG+AGG + chr1_1:6372698-6372717 None:intergenic 60.0%
AGCTGCACCTGCTGAACCTG+AGG - chr1_1:6372879-6372898 Msa0003870:CDS 60.0%
GCAGGATGCTGCCACAGATC+AGG - chr1_1:6372912-6372931 Msa0003870:CDS 60.0%
GCTGCCACAGATCAGGCTTC+TGG - chr1_1:6372919-6372938 Msa0003870:CDS 60.0%
ACCGGCGGGAAGACTCTTCC+AGG - chr1_1:6369653-6369672 Msa0003870:three_prime_UTR 65.0%
GGCGGGAAGACTCTTCCAGG+TGG - chr1_1:6369656-6369675 Msa0003870:three_prime_UTR 65.0%
TGGACAGGGTGGGTATGGGG+GGG - chr1_1:6372360-6372379 Msa0003870:intron 65.0%
GCTGCAGCCTCAGGTTCAGC+AGG + chr1_1:6372889-6372908 None:intergenic 65.0%
ACCTGAGGCTGCAGCTGAGC+AGG - chr1_1:6372894-6372913 Msa0003870:CDS 65.0%
TCCTGCTCAGCTGCAGCCTC+AGG + chr1_1:6372898-6372917 None:intergenic 65.0%
ATCGGCGGTGAGACCGGCGA+TGG + chr1_1:6369832-6369851 None:intergenic 70.0%
ATCGCCGGTCTCACCGCCGA+TGG - chr1_1:6369831-6369850 Msa0003870:CDS 70.0%
ACGGCCATCGGCGGTGAGAC+CGG + chr1_1:6369838-6369857 None:intergenic 70.0%
!! GGTGCTGGTGGGGCTGACCA+AGG - chr1_1:6372955-6372974 Msa0003870:CDS 70.0%
GCTGGTGGGGCTGACCAAGG+TGG - chr1_1:6372958-6372977 Msa0003870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6369505 6373321 6369505 ID=Msa0003870;Name=Msa0003870
chr1_1 mRNA 6369505 6373321 6369505 ID=Msa0003870-mRNA-1;Parent=Msa0003870;Name=Msa0003870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|2|322|281
chr1_1 exon 6369505 6370321 6369505 ID=Msa0003870-mRNA-1:exon:2079;Parent=Msa0003870-mRNA-1
chr1_1 exon 6372864 6373321 6372864 ID=Msa0003870-mRNA-1:exon:2078;Parent=Msa0003870-mRNA-1
chr1_1 five_prime_UTR 6373215 6373321 6373215 ID=Msa0003870-mRNA-1:five_prime_utr;Parent=Msa0003870-mRNA-1
chr1_1 CDS 6372864 6373214 6372864 ID=Msa0003870-mRNA-1:cds;Parent=Msa0003870-mRNA-1
chr1_1 CDS 6369827 6370321 6369827 ID=Msa0003870-mRNA-1:cds;Parent=Msa0003870-mRNA-1
chr1_1 three_prime_UTR 6369505 6369826 6369505 ID=Msa0003870-mRNA-1:three_prime_utr;Parent=Msa0003870-mRNA-1
Gene Sequence

>Msa0003870

ATGTTTAGAAATCAATACGATACCGACGTAACAACATGGTCACCGGCGGGAAGACTCTTCCAGGTGGAATACGCCATGGAAGCAGTTAAGCAAGGTTCAGCAGCAATAGGTCTCCGATCCAAAACTCACGTGGTTCTCGCGTGTGTTAACAAAGCCAATTCTGAACTATCTTCTCATCAGAAGAAGATCTTCAAGGTTGATGATCATATCGGCGTTGCCATCGCCGGTCTCACCGCCGATGGCCGTGTTCTTTCCCGTTACATGAGATCTGAATGCATTAACTATAATTACACTTATGAATCTCCGCTTCCCGTTGGTAGACTCGTCGTTCAGCTCGCCGATAAGGCTCAGGTTTGCACTCAGCGATCATGGAAGCGTCCTTATGGCGTTGGACTTCTAGTAGCTGGATTAGATGAATCAGGGGCTCACCTCTATTACAACTGCCCAAGCGGAAACTATTTTGAATATCAGGCATTTGCAATCGGTTCACGCTCACAAGCTGCAAAGACATATTTGGAACGCAAATTTAACAACTTCACAGCCTCCTCCCGGGAAGATCTGATCAAAGATGCACTCATTGCAACTAGGGAGTCCTTGCAAGGTGAAAAGCTCAGGAGCTCCGTATGCACCATTGCTGTGGTTGGAGTTGGTGAGCCTTTCCACATTTTGGATCAGGAAACTGTTCAACAGTTAATTGATACTTTTGAGATTGTGAGGGAGGAAGAAGCTGCACCTGCTGAACCTGAGGCTGCAGCTGAGCAGGATGCTGCCACAGATCAGGCTTCTGGTGCAGATCAAAGTGGTGCTGGTGGGGCTGACCAAGGTGGTTCTCCAATGGAGATTTGA
Protein sequence

>Msa0003870

MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFNNFTASSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVREEEAAPAEPEAAAEQDAATDQASGADQSGAGGADQGGSPMEI*