AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146420 MtrunA17_Chr1g0155371 97.887 284 3 1 1 281 1 284 0.0 573
Msa0146420 MtrunA17_Chr4g0004521 87.179 273 21 2 20 281 7 276 7.44e-160 445
Msa0146420 MtrunA17_Chr4g0027841 75.102 245 52 4 1 241 83 322 1.49e-124 358
Msa0146420 MtrunA17_Chr3g0142511 86.826 167 20 1 115 281 25 189 3.28e-103 298
Msa0146420 MtrunA17_Chr1g0210811 45.902 183 94 2 1 178 3 185 5.95e-47 157
Msa0146420 MtrunA17_Chr7g0243311 38.785 214 125 3 5 214 4 215 3.09e-43 147
Msa0146420 MtrunA17_Chr5g0401801 42.135 178 99 2 5 178 4 181 5.98e-42 144
Msa0146420 MtrunA17_Chr0c02g0489661 35.111 225 141 3 1 223 1 222 1.70e-41 143
Msa0146420 MtrunA17_Chr6g0459741 40.838 191 108 3 6 193 8 196 7.94e-39 136
Msa0146420 MtrunA17_Chr2g0308541 34.348 230 145 5 6 230 9 237 1.26e-38 135
Msa0146420 MtrunA17_Chr8g0360781 35.217 230 143 5 6 230 9 237 1.76e-38 135
Msa0146420 MtrunA17_Chr8g0371571 37.736 212 123 4 5 210 3 211 6.47e-38 134
Msa0146420 MtrunA17_Chr2g0283841 35.681 213 128 4 4 210 2 211 3.37e-35 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146420 AT1G47250.1 78.445 283 53 2 1 281 1 277 6.50e-160 446
Msa0146420 AT5G42790.1 86.134 238 33 0 1 238 1 238 6.88e-159 443
Msa0146420 AT1G53850.1 38.819 237 135 4 1 232 3 234 2.49e-46 155
Msa0146420 AT1G53850.2 38.819 237 135 4 1 232 3 234 2.49e-46 155
Msa0146420 AT3G14290.1 45.355 183 95 2 1 178 3 185 2.51e-46 155
Msa0146420 AT3G22110.1 36.017 236 141 4 5 232 4 237 2.50e-43 148
Msa0146420 AT1G16470.1 36.444 225 138 3 1 223 1 222 2.46e-40 140
Msa0146420 AT1G16470.2 36.444 225 138 3 1 223 1 222 2.46e-40 140
Msa0146420 AT1G79210.1 36.000 225 139 3 1 223 1 222 7.40e-40 139
Msa0146420 AT1G79210.2 36.000 225 139 3 1 223 1 222 7.40e-40 139
Msa0146420 AT1G79210.3 36.000 225 139 3 1 223 1 222 7.40e-40 139
Msa0146420 AT5G35590.1 34.348 230 145 5 6 230 9 237 2.00e-38 135
Msa0146420 AT5G66140.1 38.208 212 122 4 5 210 3 211 4.19e-37 132
Msa0146420 AT2G05840.1 34.348 230 145 5 6 230 9 237 4.44e-37 132
Msa0146420 AT3G51260.1 37.264 212 124 4 5 210 3 211 5.66e-36 129
Msa0146420 AT3G51260.2 37.264 212 124 4 5 210 3 211 6.60e-36 129
Msa0146420 AT2G05840.2 36.181 199 123 3 6 200 9 207 1.44e-35 127
Msa0146420 AT2G27020.1 37.895 190 115 2 6 193 8 196 8.34e-35 126
Msa0146420 AT2G05840.3 36.170 188 116 3 6 189 9 196 1.21e-33 122
Msa0146420 AT2G27020.2 37.895 190 115 2 6 193 110 298 1.81e-33 125
Msa0146420 AT4G15165.1 33.654 208 87 7 5 204 4 168 2.40e-25 100

Find 104 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACTATTTACTGAAATTC+TGG 0.213745 1_4:-6070478 Msa0146420:three_prime_UTR
TGGTGAGCCTTTCCACATTT+TGG 0.215333 1_4:-6070871 Msa0146420:CDS
CGCGAGAACCACGTGAGTTT+TGG 0.220139 1_4:+6073970 None:intergenic
ACAAGCTGCAAAGACATATT+TGG 0.303194 1_4:-6071024 Msa0146420:CDS
TCCTGCTCAGCTGCAGCCTC+AGG 0.321152 1_4:+6070777 None:intergenic
TAACCTAACCTGAGCCTTAT+CGG 0.340591 1_4:+6073751 None:intergenic
ACTGTTATTTGAAAATGAAT+AGG 0.340974 1_4:-6070640 Msa0146420:three_prime_UTR
GCTGCCACAGATCAGGCTTC+TGG 0.352014 1_4:-6070753 Msa0146420:CDS
CGATCATGGAAGCGTCCTTA+TGG 0.372743 1_4:-6071155 Msa0146420:CDS
ATGAGAAGATAGTTCAGAAT+TGG 0.382855 1_4:+6073934 None:intergenic
GTAGCTGGATTAGATGAATC+AGG 0.390011 1_4:-6071119 Msa0146420:CDS
TAAACAAAAGGAAAAGGAAA+AGG 0.398972 1_4:-6074170 Msa0146420:five_prime_UTR
GGCGTTGGACTTCTAGTAGC+TGG 0.403744 1_4:-6071134 Msa0146420:CDS
AAAGAGTAAACAAAAGGAAA+AGG 0.406910 1_4:-6074176 Msa0146420:five_prime_UTR
CGCTTGGGCAGTTGTAATAG+AGG 0.407257 1_4:+6071090 None:intergenic
GCTGCAGCCTCAGGTTCAGC+AGG 0.411570 1_4:+6070786 None:intergenic
TATCAACAATCGGGTCCCTT+TGG 0.415540 1_4:-6070412 Msa0146420:three_prime_UTR
TATTTCTTAATATCAACAAT+CGG 0.423419 1_4:-6070422 Msa0146420:three_prime_UTR
ACCTGAGGCTGCAGCTGAGC+AGG 0.426509 1_4:-6070778 Msa0146420:CDS
CTGGATAAAATGTTGATTGA+AGG 0.429409 1_4:-6070459 Msa0146420:three_prime_UTR
TCATCAGAAGAAGATCTTCA+AGG 0.432131 1_4:-6073915 Msa0146420:CDS
GCAGGATGCTGCCACAGATC+AGG 0.446173 1_4:-6070760 Msa0146420:CDS
TTAAATTATCAAATCTCCAT+TGG 0.446472 1_4:+6070687 None:intergenic
AAGCAAGGTTCAGCAGCAAT+AGG 0.446969 1_4:-6074001 Msa0146420:CDS
ACCGGCGGGAAGACTCTTCC+AGG 0.447398 1_4:-6074047 Msa0146420:CDS
CATCTTTGATCAGATCTTCC+CGG 0.448900 1_4:+6070970 None:intergenic
CAGATCAAAGTGGTGCTGGT+GGG 0.452356 1_4:-6070728 Msa0146420:CDS
GCCGATCACAAAATCAAAAT+CGG 0.458938 1_4:-6074113 Msa0146420:five_prime_UTR
CCTTGCAAGGTGAAAAGCTC+AGG 0.463589 1_4:-6070926 Msa0146420:CDS
CATAGATAAATAGTAGGTTC+AGG 0.468046 1_4:+6070500 None:intergenic
GCATTCAGATCTCATGTAAC+GGG 0.468182 1_4:+6073835 None:intergenic
GATCAGATCTTCCCGGGAGG+AGG 0.468370 1_4:+6070977 None:intergenic
TGGATAAAATGTTGATTGAA+GGG 0.470632 1_4:-6070458 Msa0146420:three_prime_UTR
ACGGCCATCGGCGGTGAGAC+CGG 0.470971 1_4:+6073865 None:intergenic
GGTGCTGGTGGGGCTGACCA+AGG 0.471608 1_4:-6070717 Msa0146420:CDS
ATTTCTTAATATCAACAATC+GGG 0.480176 1_4:-6070421 Msa0146420:three_prime_UTR
GCAGATCAAAGTGGTGCTGG+TGG 0.482449 1_4:-6070729 Msa0146420:CDS
CGTCGTTCAGCTCGCCGATA+AGG 0.485800 1_4:-6073765 Msa0146420:CDS
ATTCAAAATAGTTTCCGCTT+GGG 0.489662 1_4:+6071075 None:intergenic
ACTAGAAGTCCAACGCCATA+AGG 0.491926 1_4:+6071140 None:intergenic
AGGTTTGCACTCAGCGATCA+TGG 0.494067 1_4:-6071169 Msa0146420:CDS
TAAAGAAAAGAGTAAACAAA+AGG 0.496946 1_4:-6074182 Msa0146420:five_prime_UTR
ACAACTTCACAGCCTCCTCC+CGG 0.497935 1_4:-6070989 Msa0146420:CDS
GAATATCAGGCATTTGCAAT+CGG 0.498552 1_4:-6071056 Msa0146420:CDS
CTTCCATGGCGTATTCCACC+TGG 0.500589 1_4:+6074029 None:intergenic
TATTCAAAATAGTTTCCGCT+TGG 0.508568 1_4:+6071074 None:intergenic
ACCATTGCTGTGGTTGGAGT+TGG 0.514251 1_4:-6070891 Msa0146420:CDS
TTCAAGGTTGATGATCATAT+CGG 0.515192 1_4:-6073899 Msa0146420:CDS
TAGTATCATAGATAAATAGT+AGG 0.519640 1_4:+6070494 None:intergenic
ATCTTTGATCAGATCTTCCC+GGG 0.521887 1_4:+6070971 None:intergenic
AAGATGCACTCATTGCAACT+AGG 0.529448 1_4:-6070953 Msa0146420:CDS
AGATCAAAGTGGTGCTGGTG+GGG 0.531118 1_4:-6070727 Msa0146420:CDS
GGTGCAGATCAAAGTGGTGC+TGG 0.531835 1_4:-6070732 Msa0146420:CDS
TTTCAAGTTGAGTGTGTCAT+GGG 0.533952 1_4:-6070617 Msa0146420:three_prime_UTR
TGGAAGCGTCCTTATGGCGT+TGG 0.534162 1_4:-6071149 Msa0146420:CDS
AACCACAGCAATGGTGCATA+CGG 0.536605 1_4:+6070899 None:intergenic
TTGTTTCTGAAATTCATCCA+TGG 0.537112 1_4:-6070553 Msa0146420:three_prime_UTR
CTCTATTACAACTGCCCAAG+CGG 0.540260 1_4:-6071089 Msa0146420:CDS
ACGAGTCTACCAACGGGAAG+CGG 0.541672 1_4:+6073785 None:intergenic
GTTTCAAGTTGAGTGTGTCA+TGG 0.550390 1_4:-6070618 Msa0146420:three_prime_UTR
AGATGCACTCATTGCAACTA+GGG 0.552459 1_4:-6070952 Msa0146420:CDS
TCAGCTCGCCGATAAGGCTC+AGG 0.552948 1_4:-6073759 Msa0146420:intron
CATATCGGCGTTGCCATCGC+CGG 0.553468 1_4:-6073884 Msa0146420:CDS
AATCGAAACAATGTACCAAA+GGG 0.553783 1_4:+6070397 None:intergenic
GTATGCACCATTGCTGTGGT+TGG 0.557714 1_4:-6070897 Msa0146420:CDS
ATCGCCGGTCTCACCGCCGA+TGG 0.557766 1_4:-6073869 Msa0146420:CDS
ACCTTGCTTAACTGCTTCCA+TGG 0.560856 1_4:+6074015 None:intergenic
TGCATTCAGATCTCATGTAA+CGG 0.564752 1_4:+6073834 None:intergenic
CGACGTAACAACATGGTCAC+CGG 0.568536 1_4:-6074065 Msa0146420:CDS
AATTTAAGATCCAGTACTTG+AGG 0.570467 1_4:-6070671 Msa0146420:three_prime_UTR
AAATCGAAACAATGTACCAA+AGG 0.571051 1_4:+6070396 None:intergenic
TGAACGACGAGTCTACCAAC+GGG 0.572203 1_4:+6073779 None:intergenic
TAGCTGGATTAGATGAATCA+GGG 0.572392 1_4:-6071118 Msa0146420:CDS
ACGGGAAAGAACACGGCCAT+CGG 0.576909 1_4:+6073853 None:intergenic
CAGTTTCCTGATCCAAAATG+TGG 0.582560 1_4:+6070859 None:intergenic
TATGAATCTCCGCTTCCCGT+TGG 0.585267 1_4:-6073794 Msa0146420:CDS
AGCTGCACCTGCTGAACCTG+AGG 0.586152 1_4:-6070793 Msa0146420:CDS
GGATAAAATGTTGATTGAAG+GGG 0.586164 1_4:-6070457 Msa0146420:three_prime_UTR
CAACTTCACAGCCTCCTCCC+GGG 0.586785 1_4:-6070988 Msa0146420:CDS
TGACCAAGGTGGTTCTCCAA+TGG 0.586988 1_4:-6070703 Msa0146420:CDS
ATCGGCGGTGAGACCGGCGA+TGG 0.592757 1_4:+6073871 None:intergenic
TCCTGATCCAAAATGTGGAA+AGG 0.593184 1_4:+6070864 None:intergenic
ACCAACTCCAACCACAGCAA+TGG 0.594452 1_4:+6070890 None:intergenic
AAGTTCACAGTGATCAGCCA+TGG 0.599270 1_4:+6070536 None:intergenic
GCTGGTGGGGCTGACCAAGG+TGG 0.603851 1_4:-6070714 Msa0146420:CDS
CTTCCAGGTGGAATACGCCA+TGG 0.612270 1_4:-6074032 Msa0146420:CDS
CTCCGTATGCACCATTGCTG+TGG 0.615712 1_4:-6070901 Msa0146420:CDS
GCAACTAGGGAGTCCTTGCA+AGG 0.618439 1_4:-6070939 Msa0146420:CDS
TCTCCATTGGAGAACCACCT+TGG 0.619130 1_4:+6070700 None:intergenic
ACCTGGAAGAGTCTTCCCGC+CGG 0.625765 1_4:+6074046 None:intergenic
GTAACAACATGGTCACCGGC+GGG 0.626802 1_4:-6074061 Msa0146420:CDS
CGTAACAACATGGTCACCGG+CGG 0.638962 1_4:-6074062 Msa0146420:CDS
GGAAAGAACACGGCCATCGG+CGG 0.645115 1_4:+6073856 None:intergenic
TGCACCAGAAGCCTGATCTG+TGG 0.645294 1_4:+6070749 None:intergenic
TCATGTAACGGGAAAGAACA+CGG 0.645339 1_4:+6073846 None:intergenic
CTGAACGACGAGTCTACCAA+CGG 0.653690 1_4:+6073778 None:intergenic
ACGATACCGACGTAACAACA+TGG 0.654506 1_4:-6074072 Msa0146420:CDS
GCCATGGAAGCAGTTAAGCA+AGG 0.656151 1_4:-6074016 Msa0146420:CDS
AGCTGGATTAGATGAATCAG+GGG 0.660204 1_4:-6071117 Msa0146420:CDS
CGGTGACCATGTTGTTACGT+CGG 0.692398 1_4:+6074066 None:intergenic
GCTTCTGGTGCAGATCAAAG+TGG 0.697173 1_4:-6070738 Msa0146420:CDS
GGCGGGAAGACTCTTCCAGG+TGG 0.706418 1_4:-6074044 Msa0146420:CDS
TCTCCGATCCAAAACTCACG+TGG 0.728289 1_4:-6073978 Msa0146420:CDS
TTTGATCAGATCTTCCCGGG+AGG 0.729135 1_4:+6070974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAAATTAAGTAATTTTAA+TGG - chr1_4:6070955-6070974 Msa0146420:CDS 10.0%
!! TTCTCTAATGTTTATTATAT+AGG - chr1_4:6071517-6071536 Msa0146420:intron 15.0%
!! AAATAATAACAAAATCAAAC+AGG + chr1_4:6071688-6071707 None:intergenic 15.0%
!!! ACTATTTTGTATACTTAATA+TGG - chr1_4:6072194-6072213 Msa0146420:intron 15.0%
!! ATTCAATAAACTAAAACATT+TGG - chr1_4:6073177-6073196 Msa0146420:intron 15.0%
!! TATTTCTTAATATCAACAAT+CGG - chr1_4:6074160-6074179 Msa0146420:five_prime_UTR 15.0%
!! TAAAGAAAAGAGTAAACAAA+AGG - chr1_4:6070400-6070419 Msa0146420:three_prime_UTR 20.0%
!! TTTAACTCAGTAATTCAATT+AGG - chr1_4:6070933-6070952 Msa0146420:CDS 20.0%
!! AAATACAGTGTTAACAAAAA+GGG + chr1_4:6071102-6071121 None:intergenic 20.0%
!! AAACATTAGAGAATACATTT+CGG + chr1_4:6071510-6071529 None:intergenic 20.0%
!! ATATAGAAACAGCATAAATA+GGG + chr1_4:6073122-6073141 None:intergenic 20.0%
!! TATATAGAAACAGCATAAAT+AGG + chr1_4:6073123-6073142 None:intergenic 20.0%
!!! GTGTTTTATTAATAGAAAGT+TGG - chr1_4:6073250-6073269 Msa0146420:intron 20.0%
!! ATATTACATGGAAAAGAATA+AGG - chr1_4:6073319-6073338 Msa0146420:intron 20.0%
!! CAAAATTACATCATAAATAC+TGG + chr1_4:6073387-6073406 None:intergenic 20.0%
!!! ATTTATGATGTAATTTTGAG+TGG - chr1_4:6073389-6073408 Msa0146420:intron 20.0%
!! TTAAATTATCAAATCTCCAT+TGG + chr1_4:6073898-6073917 None:intergenic 20.0%
!!! ACTGTTATTTGAAAATGAAT+AGG - chr1_4:6073942-6073961 Msa0146420:CDS 20.0%
!! TAGTATCATAGATAAATAGT+AGG + chr1_4:6074091-6074110 None:intergenic 20.0%
!! ATTTCTTAATATCAACAATC+GGG - chr1_4:6074161-6074180 Msa0146420:five_prime_UTR 20.0%
! AAAGAGTAAACAAAAGGAAA+AGG - chr1_4:6070406-6070425 Msa0146420:three_prime_UTR 25.0%
! TAAACAAAAGGAAAAGGAAA+AGG - chr1_4:6070412-6070431 Msa0146420:three_prime_UTR 25.0%
! TTGTTCGGATTATTCTAATT+AGG - chr1_4:6070879-6070898 Msa0146420:CDS 25.0%
! TGTTCGGATTATTCTAATTA+GGG - chr1_4:6070880-6070899 Msa0146420:CDS 25.0%
! TAGTCGAGATTATTTACTTT+AGG - chr1_4:6071041-6071060 Msa0146420:CDS 25.0%
! CAAATACAGTGTTAACAAAA+AGG + chr1_4:6071103-6071122 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1_4:6071213-6071232 Msa0146420:intron 25.0%
! AAAAAATAAGCCAATCCAAA+CGG - chr1_4:6071325-6071344 Msa0146420:intron 25.0%
!! TTTCAGTTTTCAACTTTTGT+TGG - chr1_4:6071362-6071381 Msa0146420:intron 25.0%
!! AAACGTTTGAAACTATGTTT+AGG - chr1_4:6071469-6071488 Msa0146420:intron 25.0%
!!! CATCAAAAAGAGTATGATTT+TGG + chr1_4:6071913-6071932 None:intergenic 25.0%
!! ATCATACTCTTTTTGATGTT+TGG - chr1_4:6071915-6071934 Msa0146420:intron 25.0%
! ATTTATATACTTCTGGGTAT+AGG + chr1_4:6072114-6072133 None:intergenic 25.0%
! ACACACATTTATATACTTCT+GGG + chr1_4:6072120-6072139 None:intergenic 25.0%
! TGTATACTTAATATGGAAGT+AGG - chr1_4:6072201-6072220 Msa0146420:intron 25.0%
! GTATACTTAATATGGAAGTA+GGG - chr1_4:6072202-6072221 Msa0146420:intron 25.0%
!!! TCTAAATGTTGTTTTGATAG+TGG - chr1_4:6072295-6072314 Msa0146420:intron 25.0%
!!! TGACAGTCATTTTGTATTTA+AGG + chr1_4:6072557-6072576 None:intergenic 25.0%
!! TGATTTGACTTAACTCTTAT+TGG - chr1_4:6073027-6073046 Msa0146420:intron 25.0%
!! GATTTGACTTAACTCTTATT+GGG - chr1_4:6073028-6073047 Msa0146420:intron 25.0%
!!! TAAAGTGTTAACAACACTTT+TGG - chr1_4:6073084-6073103 Msa0146420:intron 25.0%
! TATAGAAACAGCATAAATAG+GGG + chr1_4:6073121-6073140 None:intergenic 25.0%
! TTGAATGAATTAAATAGACC+AGG + chr1_4:6073163-6073182 None:intergenic 25.0%
!! ATTTGGTTAGTTAATCAACA+TGG - chr1_4:6073194-6073213 Msa0146420:intron 25.0%
! TTATTAATAGAAAGTTGGAC+AGG - chr1_4:6073255-6073274 Msa0146420:intron 25.0%
! TATTAATAGAAAGTTGGACA+GGG - chr1_4:6073256-6073275 Msa0146420:intron 25.0%
! GATACTATTTACTGAAATTC+TGG - chr1_4:6074104-6074123 Msa0146420:exon 25.0%
!! TGGATAAAATGTTGATTGAA+GGG - chr1_4:6074124-6074143 Msa0146420:five_prime_UTR 25.0%
!!! TCCGATTTTGATTTTGTGAT+CGG + chr1_4:6070473-6070492 None:intergenic 30.0%
ATGAGAAGATAGTTCAGAAT+TGG + chr1_4:6070651-6070670 None:intergenic 30.0%
!! TTCAAGGTTGATGATCATAT+CGG - chr1_4:6070683-6070702 Msa0146420:exon 30.0%
AAACAGGTAAAAACGGAAAA+CGG + chr1_4:6070861-6070880 None:intergenic 30.0%
TTAGAATAATCCGAACAAAC+AGG + chr1_4:6070877-6070896 None:intergenic 30.0%
!!! AATTGTAGCTAGGGTTTTTT+AGG - chr1_4:6070909-6070928 Msa0146420:CDS 30.0%
!!! ATTGTAGCTAGGGTTTTTTA+GGG - chr1_4:6070910-6070929 Msa0146420:CDS 30.0%
!! GATTTGATTTGTTATGCTTG+TGG - chr1_4:6070999-6071018 Msa0146420:CDS 30.0%
TGACAGTGATTAGAATGAAA+TGG - chr1_4:6071121-6071140 Msa0146420:CDS 30.0%
GACAGTGATTAGAATGAAAT+GGG - chr1_4:6071122-6071141 Msa0146420:CDS 30.0%
CAAAAATAAGCCAATCCAAA+TGG + chr1_4:6071165-6071184 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+GGG - chr1_4:6071326-6071345 Msa0146420:intron 30.0%
TAATTGTGATTGAGAGAAGA+TGG - chr1_4:6071418-6071437 Msa0146420:intron 30.0%
!! ATCTAGAGGGAGTATATTTT+CGG - chr1_4:6071446-6071465 Msa0146420:intron 30.0%
GAAATACTATGATGCTTCTA+TGG - chr1_4:6071644-6071663 Msa0146420:intron 30.0%
TTGAATGTCTTGAGAATTTG+AGG - chr1_4:6071706-6071725 Msa0146420:intron 30.0%
!!! GAGAATTTGAGGTTTTTAGT+TGG - chr1_4:6071717-6071736 Msa0146420:intron 30.0%
!! GTATGATTTTGGCAAAATCA+CGG + chr1_4:6071902-6071921 None:intergenic 30.0%
!!! TTGATGTTTGGTTTTTGACT+TGG - chr1_4:6071927-6071946 Msa0146420:intron 30.0%
GGGTACAAAAATTATTTCAC+AGG + chr1_4:6072022-6072041 None:intergenic 30.0%
CACACACATTTATATACTTC+TGG + chr1_4:6072121-6072140 None:intergenic 30.0%
! CAGAAGTATATAAATGTGTG+TGG - chr1_4:6072119-6072138 Msa0146420:intron 30.0%
!! ATCACTTTTGAGCTGTTATT+TGG - chr1_4:6072166-6072185 Msa0146420:intron 30.0%
CATATGATAGAGATTAGAGA+CGG - chr1_4:6072349-6072368 Msa0146420:intron 30.0%
TACGGTGTAGTTATTCAAAT+TGG - chr1_4:6072380-6072399 Msa0146420:intron 30.0%
ACGGTGTAGTTATTCAAATT+GGG - chr1_4:6072381-6072400 Msa0146420:intron 30.0%
!! TGTTTTGTTACGATCCATTA+TGG - chr1_4:6072446-6072465 Msa0146420:intron 30.0%
TATCTTACTTTCATTCTCTG+TGG - chr1_4:6072514-6072533 Msa0146420:intron 30.0%
TGATTTACTTAGCATTGTAG+TGG - chr1_4:6072655-6072674 Msa0146420:intron 30.0%
!! TAACTTGCTTGTAGAAAAAC+TGG - chr1_4:6072949-6072968 Msa0146420:intron 30.0%
ATAGTTACTATATGTGAACC+TGG - chr1_4:6073142-6073161 Msa0146420:intron 30.0%
ATCTTGTCTTGCATATTACA+TGG - chr1_4:6073307-6073326 Msa0146420:intron 30.0%
ATTCAAAATAGTTTCCGCTT+GGG + chr1_4:6073510-6073529 None:intergenic 30.0%
TATTCAAAATAGTTTCCGCT+TGG + chr1_4:6073511-6073530 None:intergenic 30.0%
!! CGGAAACTATTTTGAATATC+AGG - chr1_4:6073513-6073532 Msa0146420:intron 30.0%
!!! TTGATACTTTTGAGATTGTG+AGG - chr1_4:6073758-6073777 Msa0146420:intron 30.0%
!!! TGATACTTTTGAGATTGTGA+GGG - chr1_4:6073759-6073778 Msa0146420:intron 30.0%
! AATTTAAGATCCAGTACTTG+AGG - chr1_4:6073911-6073930 Msa0146420:CDS 30.0%
!! TTGTTTCTGAAATTCATCCA+TGG - chr1_4:6074029-6074048 Msa0146420:CDS 30.0%
CATAGATAAATAGTAGGTTC+AGG + chr1_4:6074085-6074104 None:intergenic 30.0%
! CTGGATAAAATGTTGATTGA+AGG - chr1_4:6074123-6074142 Msa0146420:five_prime_UTR 30.0%
! GGATAAAATGTTGATTGAAG+GGG - chr1_4:6074125-6074144 Msa0146420:five_prime_UTR 30.0%
AATCGAAACAATGTACCAAA+GGG + chr1_4:6074188-6074207 None:intergenic 30.0%
AAATCGAAACAATGTACCAA+AGG + chr1_4:6074189-6074208 None:intergenic 30.0%
GCCGATCACAAAATCAAAAT+CGG - chr1_4:6070469-6070488 Msa0146420:three_prime_UTR 35.0%
TCATCAGAAGAAGATCTTCA+AGG - chr1_4:6070667-6070686 Msa0146420:three_prime_UTR 35.0%
TGCATTCAGATCTCATGTAA+CGG + chr1_4:6070751-6070770 None:intergenic 35.0%
!! TCCGTTTTTACCTGTTTGTT+CGG - chr1_4:6070864-6070883 Msa0146420:CDS 35.0%
TCCGAACAAACAGGTAAAAA+CGG + chr1_4:6070868-6070887 None:intergenic 35.0%
!!! AGGGTTTTGAAATTGTAGCT+AGG - chr1_4:6070899-6070918 Msa0146420:CDS 35.0%
!!! GGGTTTTGAAATTGTAGCTA+GGG - chr1_4:6070900-6070919 Msa0146420:CDS 35.0%
!! ACTTTAGGATCTTAACTGAG+TGG - chr1_4:6071056-6071075 Msa0146420:CDS 35.0%
CAGTGTTAACAAAAAGGGTT+TGG + chr1_4:6071097-6071116 None:intergenic 35.0%
TGTAAGATTCAGTGTCCATT+TGG - chr1_4:6071147-6071166 Msa0146420:CDS 35.0%
GAAAACTGAAACAGACACTA+AGG + chr1_4:6071353-6071372 None:intergenic 35.0%
! AGTTTTCAACTTTTGTTGGC+TGG - chr1_4:6071366-6071385 Msa0146420:intron 35.0%
AGAAGATGGAATCAATCTAG+AGG - chr1_4:6071432-6071451 Msa0146420:intron 35.0%
GAAGATGGAATCAATCTAGA+GGG - chr1_4:6071433-6071452 Msa0146420:intron 35.0%
! CTAATGACACGTTCTACTTT+TGG + chr1_4:6071563-6071582 None:intergenic 35.0%
!! TCATTAGTTTCCTCTCCTTT+TGG - chr1_4:6071576-6071595 Msa0146420:intron 35.0%
!! TCTCCTTTTGGTCTTTTTTG+CGG - chr1_4:6071588-6071607 Msa0146420:intron 35.0%
TATGATGCTTCTATGGTGTT+TGG - chr1_4:6071651-6071670 Msa0146420:intron 35.0%
CGGTAAGTTTGACAAAATCA+CGG - chr1_4:6071831-6071850 Msa0146420:intron 35.0%
GGTAAGTTTGACAAAATCAC+GGG - chr1_4:6071832-6071851 Msa0146420:intron 35.0%
ATATACTTCTGGGTATAGGT+TGG + chr1_4:6072110-6072129 None:intergenic 35.0%
AGTTCCGTTGACATTCATTA+GGG + chr1_4:6072420-6072439 None:intergenic 35.0%
GATCCATTATGGATGTTCTA+GGG - chr1_4:6072457-6072476 Msa0146420:intron 35.0%
ATCCATTATGGATGTTCTAG+GGG - chr1_4:6072458-6072477 Msa0146420:intron 35.0%
TTCACTTTCCCATTACTATG+AGG + chr1_4:6072488-6072507 None:intergenic 35.0%
ATGTCATTCTTTGATGCATC+TGG - chr1_4:6072588-6072607 Msa0146420:intron 35.0%
! TCTTCTCTTTCAAGGTTTTG+AGG - chr1_4:6072615-6072634 Msa0146420:intron 35.0%
ATGCATAGAGAAATCCTGAA+GGG - chr1_4:6072793-6072812 Msa0146420:intron 35.0%
!! ATGATGTAATTTTGAGTGGC+AGG - chr1_4:6073393-6073412 Msa0146420:intron 35.0%
! TAGCTGGATTAGATGAATCA+GGG - chr1_4:6073464-6073483 Msa0146420:intron 35.0%
GAATATCAGGCATTTGCAAT+CGG - chr1_4:6073526-6073545 Msa0146420:intron 35.0%
ACAAGCTGCAAAGACATATT+TGG - chr1_4:6073558-6073577 Msa0146420:intron 35.0%
! GTTTTTAACACCTCAAGTAC+TGG + chr1_4:6073924-6073943 None:intergenic 35.0%
!! TTTCAAGTTGAGTGTGTCAT+GGG - chr1_4:6073965-6073984 Msa0146420:CDS 35.0%
! TCATGTAACGGGAAAGAACA+CGG + chr1_4:6070739-6070758 None:intergenic 40.0%
GCATTCAGATCTCATGTAAC+GGG + chr1_4:6070750-6070769 None:intergenic 40.0%
! TAACCTAACCTGAGCCTTAT+CGG + chr1_4:6070834-6070853 None:intergenic 40.0%
GATTCAGTGTCCATTTGGAT+TGG - chr1_4:6071152-6071171 Msa0146420:CDS 40.0%
GCAAAAAAGACCAAAAGGAG+AGG + chr1_4:6071589-6071608 None:intergenic 40.0%
!! CTCCTTTTGGTCTTTTTTGC+GGG - chr1_4:6071589-6071608 Msa0146420:intron 40.0%
!! TCCTTTTGGTCTTTTTTGCG+GGG - chr1_4:6071590-6071609 Msa0146420:intron 40.0%
!!! GTTTGCTGACTCTTGTTTTC+TGG - chr1_4:6071781-6071800 Msa0146420:intron 40.0%
!! GACTTGTTGCTTGTGTGAAA+TGG - chr1_4:6071808-6071827 Msa0146420:intron 40.0%
! TTGTTGCTTGTGTGAAATGG+CGG - chr1_4:6071811-6071830 Msa0146420:intron 40.0%
CGGTTGGCAAAAACTAAGTT+TGG + chr1_4:6071882-6071901 None:intergenic 40.0%
!! GATTTTGGCAAAATCACGGT+TGG + chr1_4:6071898-6071917 None:intergenic 40.0%
!! TTTGACTTGGCTCACATTGA+TGG - chr1_4:6071940-6071959 Msa0146420:intron 40.0%
! CTCACATTGATGGTCAAGTT+TGG - chr1_4:6071950-6071969 Msa0146420:intron 40.0%
TGTCTTCTTGACAAACACGA+CGG + chr1_4:6072045-6072064 None:intergenic 40.0%
TAATATGGAAGTAGGGAGAC+TGG - chr1_4:6072209-6072228 Msa0146420:intron 40.0%
TTAGAGACGGAGTTAGACTA+CGG - chr1_4:6072362-6072381 Msa0146420:intron 40.0%
TGCACCCTAATGAATGTCAA+CGG - chr1_4:6072413-6072432 Msa0146420:intron 40.0%
CAGTTCCGTTGACATTCATT+AGG + chr1_4:6072421-6072440 None:intergenic 40.0%
CGATCCATTATGGATGTTCT+AGG - chr1_4:6072456-6072475 Msa0146420:intron 40.0%
TACCCCTAGAACATCCATAA+TGG + chr1_4:6072463-6072482 None:intergenic 40.0%
CTTACTTTCATTCTCTGTGG+AGG - chr1_4:6072517-6072536 Msa0146420:intron 40.0%
!!! TCTCTTTCAAGGTTTTGAGG+AGG - chr1_4:6072618-6072637 Msa0146420:intron 40.0%
!!! CTCTTTCAAGGTTTTGAGGA+GGG - chr1_4:6072619-6072638 Msa0146420:intron 40.0%
ATTGTCTAAACTGTCGTGAG+AGG - chr1_4:6072717-6072736 Msa0146420:intron 40.0%
CATGCATAGAGAAATCCTGA+AGG - chr1_4:6072792-6072811 Msa0146420:intron 40.0%
TGCATAGAGAAATCCTGAAG+GGG - chr1_4:6072794-6072813 Msa0146420:intron 40.0%
TACGCTGTTGTGTTGTCTTA+TGG - chr1_4:6072887-6072906 Msa0146420:intron 40.0%
TGTTGTCTTATGGTGTGAAG+TGG - chr1_4:6072897-6072916 Msa0146420:intron 40.0%
TGTAGAAAAACTGGCTGAAC+AGG - chr1_4:6072958-6072977 Msa0146420:intron 40.0%
AAACAGCATAAATAGGGGAG+GGG + chr1_4:6073116-6073135 None:intergenic 40.0%
GAAACAGCATAAATAGGGGA+GGG + chr1_4:6073117-6073136 None:intergenic 40.0%
AGAAACAGCATAAATAGGGG+AGG + chr1_4:6073118-6073137 None:intergenic 40.0%
TAATAGAAAGTTGGACAGGG+TGG - chr1_4:6073259-6073278 Msa0146420:intron 40.0%
AATAGAAAGTTGGACAGGGT+GGG - chr1_4:6073260-6073279 Msa0146420:intron 40.0%
! GTAGCTGGATTAGATGAATC+AGG - chr1_4:6073463-6073482 Msa0146420:intron 40.0%
! AGCTGGATTAGATGAATCAG+GGG - chr1_4:6073465-6073484 Msa0146420:intron 40.0%
ATCTTTGATCAGATCTTCCC+GGG + chr1_4:6073614-6073633 None:intergenic 40.0%
CATCTTTGATCAGATCTTCC+CGG + chr1_4:6073615-6073634 None:intergenic 40.0%
AAGATGCACTCATTGCAACT+AGG - chr1_4:6073629-6073648 Msa0146420:intron 40.0%
AGATGCACTCATTGCAACTA+GGG - chr1_4:6073630-6073649 Msa0146420:intron 40.0%
TCCTGATCCAAAATGTGGAA+AGG + chr1_4:6073721-6073740 None:intergenic 40.0%
CAGTTTCCTGATCCAAAATG+TGG + chr1_4:6073726-6073745 None:intergenic 40.0%
!!! TACTTTTGAGATTGTGAGGG+AGG - chr1_4:6073762-6073781 Msa0146420:CDS 40.0%
!! GTTTCAAGTTGAGTGTGTCA+TGG - chr1_4:6073964-6073983 Msa0146420:CDS 40.0%
ACGATACCGACGTAACAACA+TGG - chr1_4:6070510-6070529 Msa0146420:three_prime_UTR 45.0%
ACCTTGCTTAACTGCTTCCA+TGG + chr1_4:6070570-6070589 None:intergenic 45.0%
AAGCAAGGTTCAGCAGCAAT+AGG - chr1_4:6070581-6070600 Msa0146420:three_prime_UTR 45.0%
!!! GAACCACGTGAGTTTTGGAT+CGG + chr1_4:6070610-6070629 None:intergenic 45.0%
CTTAACTGAGTGGCTCACTT+TGG - chr1_4:6071066-6071085 Msa0146420:CDS 45.0%
!! CCTTTTGGTCTTTTTTGCGG+GGG - chr1_4:6071591-6071610 Msa0146420:intron 45.0%
GTACAGAAGTTGTCCAACCT+GGG - chr1_4:6071616-6071635 Msa0146420:intron 45.0%
TCATAGTATTTCGCCTACCC+AGG + chr1_4:6071636-6071655 None:intergenic 45.0%
AGTGTCTCTGTTAGTGACTG+TGG - chr1_4:6071743-6071762 Msa0146420:intron 45.0%
TCTTCTTGACAAACACGACG+GGG + chr1_4:6072043-6072062 None:intergenic 45.0%
GTCTTCTTGACAAACACGAC+GGG + chr1_4:6072044-6072063 None:intergenic 45.0%
AGGGGTAGACCTCATAGTAA+TGG - chr1_4:6072476-6072495 Msa0146420:intron 45.0%
GGGGTAGACCTCATAGTAAT+GGG - chr1_4:6072477-6072496 Msa0146420:intron 45.0%
CTGGAACGTCTTCTCTTTCA+AGG - chr1_4:6072607-6072626 Msa0146420:intron 45.0%
!! TAGTGGTCTATCGACTCGAT+AGG - chr1_4:6072672-6072691 Msa0146420:intron 45.0%
AAACTGTCGTGAGAGGCTAT+TGG - chr1_4:6072724-6072743 Msa0146420:intron 45.0%
GCATAGAGAAATCCTGAAGG+GGG - chr1_4:6072795-6072814 Msa0146420:intron 45.0%
!! CAAAAGTATTAGCCCCCTTC+AGG + chr1_4:6072810-6072829 None:intergenic 45.0%
AACAGCATAAATAGGGGAGG+GGG + chr1_4:6073115-6073134 None:intergenic 45.0%
ACTAGAAGTCCAACGCCATA+AGG + chr1_4:6073445-6073464 None:intergenic 45.0%
CTCTATTACAACTGCCCAAG+CGG - chr1_4:6073493-6073512 Msa0146420:intron 45.0%
AACCACAGCAATGGTGCATA+CGG + chr1_4:6073686-6073705 None:intergenic 45.0%
! TGGTGAGCCTTTCCACATTT+TGG - chr1_4:6073711-6073730 Msa0146420:intron 45.0%
! GCCTTTCCACATTTTGGATC+AGG - chr1_4:6073717-6073736 Msa0146420:intron 45.0%
AAGTTCACAGTGATCAGCCA+TGG + chr1_4:6074049-6074068 None:intergenic 45.0%
TATCAACAATCGGGTCCCTT+TGG - chr1_4:6074170-6074189 Msa0146420:five_prime_UTR 45.0%
CGGTGACCATGTTGTTACGT+CGG + chr1_4:6070519-6070538 None:intergenic 50.0%
CGACGTAACAACATGGTCAC+CGG - chr1_4:6070517-6070536 Msa0146420:three_prime_UTR 50.0%
GCCATGGAAGCAGTTAAGCA+AGG - chr1_4:6070566-6070585 Msa0146420:three_prime_UTR 50.0%
TCTCCGATCCAAAACTCACG+TGG - chr1_4:6070604-6070623 Msa0146420:three_prime_UTR 50.0%
TATGAATCTCCGCTTCCCGT+TGG - chr1_4:6070788-6070807 Msa0146420:CDS 50.0%
TGAACGACGAGTCTACCAAC+GGG + chr1_4:6070806-6070825 None:intergenic 50.0%
CTGAACGACGAGTCTACCAA+CGG + chr1_4:6070807-6070826 None:intergenic 50.0%
CACTAAGGACCCGTTTGGAT+TGG + chr1_4:6071338-6071357 None:intergenic 50.0%
ACAGACACTAAGGACCCGTT+TGG + chr1_4:6071343-6071362 None:intergenic 50.0%
CCCCCGCAAAAAAGACCAAA+AGG + chr1_4:6071594-6071613 None:intergenic 50.0%
!!! TTTGGTCTTTTTTGCGGGGG+AGG - chr1_4:6071594-6071613 Msa0146420:intron 50.0%
GGTACAGAAGTTGTCCAACC+TGG - chr1_4:6071615-6071634 Msa0146420:intron 50.0%
AGAAGTTGTCCAACCTGGGT+AGG - chr1_4:6071620-6071639 Msa0146420:intron 50.0%
AGTATTTCGCCTACCCAGGT+TGG + chr1_4:6071632-6071651 None:intergenic 50.0%
GTCTCTGTTAGTGACTGTGG+TGG - chr1_4:6071746-6071765 Msa0146420:intron 50.0%
CTTCTTGACAAACACGACGG+GGG + chr1_4:6072042-6072061 None:intergenic 50.0%
!!! GGTTTTGAGGAGGGAAACAG+TGG - chr1_4:6072628-6072647 Msa0146420:intron 50.0%
AAAGTTGGACAGGGTGGGTA+TGG - chr1_4:6073265-6073284 Msa0146420:intron 50.0%
AAGTTGGACAGGGTGGGTAT+GGG - chr1_4:6073266-6073285 Msa0146420:intron 50.0%
AGGTTTGCACTCAGCGATCA+TGG - chr1_4:6073413-6073432 Msa0146420:intron 50.0%
!! CGATCATGGAAGCGTCCTTA+TGG - chr1_4:6073427-6073446 Msa0146420:intron 50.0%
CGCTTGGGCAGTTGTAATAG+AGG + chr1_4:6073495-6073514 None:intergenic 50.0%
TTTGATCAGATCTTCCCGGG+AGG + chr1_4:6073611-6073630 None:intergenic 50.0%
! CCTGAGCTTTTCACCTTGCA+AGG + chr1_4:6073659-6073678 None:intergenic 50.0%
CCTTGCAAGGTGAAAAGCTC+AGG - chr1_4:6073656-6073675 Msa0146420:intron 50.0%
GTATGCACCATTGCTGTGGT+TGG - chr1_4:6073685-6073704 Msa0146420:intron 50.0%
ACCATTGCTGTGGTTGGAGT+TGG - chr1_4:6073691-6073710 Msa0146420:intron 50.0%
ACCAACTCCAACCACAGCAA+TGG + chr1_4:6073695-6073714 None:intergenic 50.0%
GCTTCTGGTGCAGATCAAAG+TGG - chr1_4:6073844-6073863 Msa0146420:CDS 50.0%
!! CAGATCAAAGTGGTGCTGGT+GGG - chr1_4:6073854-6073873 Msa0146420:CDS 50.0%
!! AGATCAAAGTGGTGCTGGTG+GGG - chr1_4:6073855-6073874 Msa0146420:CDS 50.0%
TGACCAAGGTGGTTCTCCAA+TGG - chr1_4:6073879-6073898 Msa0146420:CDS 50.0%
TCTCCATTGGAGAACCACCT+TGG + chr1_4:6073885-6073904 None:intergenic 50.0%
CGTAACAACATGGTCACCGG+CGG - chr1_4:6070520-6070539 Msa0146420:three_prime_UTR 55.0%
GTAACAACATGGTCACCGGC+GGG - chr1_4:6070521-6070540 Msa0146420:three_prime_UTR 55.0%
CTTCCAGGTGGAATACGCCA+TGG - chr1_4:6070550-6070569 Msa0146420:three_prime_UTR 55.0%
CTTCCATGGCGTATTCCACC+TGG + chr1_4:6070556-6070575 None:intergenic 55.0%
! CGCGAGAACCACGTGAGTTT+TGG + chr1_4:6070615-6070634 None:intergenic 55.0%
ACGGGAAAGAACACGGCCAT+CGG + chr1_4:6070732-6070751 None:intergenic 55.0%
ACGAGTCTACCAACGGGAAG+CGG + chr1_4:6070800-6070819 None:intergenic 55.0%
TCGCCGATAAGGCTCAGGTT+AGG - chr1_4:6070828-6070847 Msa0146420:CDS 55.0%
GAAGTAGGGAGACTGGTGTG+CGG - chr1_4:6072216-6072235 Msa0146420:intron 55.0%
AGTTGGACAGGGTGGGTATG+GGG - chr1_4:6073267-6073286 Msa0146420:intron 55.0%
!! TGGAAGCGTCCTTATGGCGT+TGG - chr1_4:6073433-6073452 Msa0146420:intron 55.0%
! GGCGTTGGACTTCTAGTAGC+TGG - chr1_4:6073448-6073467 Msa0146420:intron 55.0%
ACAACTTCACAGCCTCCTCC+CGG - chr1_4:6073593-6073612 Msa0146420:intron 55.0%
GCAACTAGGGAGTCCTTGCA+AGG - chr1_4:6073643-6073662 Msa0146420:intron 55.0%
CTCCGTATGCACCATTGCTG+TGG - chr1_4:6073681-6073700 Msa0146420:intron 55.0%
TGCACCAGAAGCCTGATCTG+TGG + chr1_4:6073836-6073855 None:intergenic 55.0%
GGTGCAGATCAAAGTGGTGC+TGG - chr1_4:6073850-6073869 Msa0146420:CDS 55.0%
! GCAGATCAAAGTGGTGCTGG+TGG - chr1_4:6073853-6073872 Msa0146420:CDS 55.0%
ACCTGGAAGAGTCTTCCCGC+CGG + chr1_4:6070539-6070558 None:intergenic 60.0%
CATATCGGCGTTGCCATCGC+CGG - chr1_4:6070698-6070717 Msa0146420:CDS 60.0%
GGAAAGAACACGGCCATCGG+CGG + chr1_4:6070729-6070748 None:intergenic 60.0%
CGTCGTTCAGCTCGCCGATA+AGG - chr1_4:6070817-6070836 Msa0146420:CDS 60.0%
TCAGCTCGCCGATAAGGCTC+AGG - chr1_4:6070823-6070842 Msa0146420:CDS 60.0%
GTTGGACAGGGTGGGTATGG+GGG - chr1_4:6073268-6073287 Msa0146420:intron 60.0%
TTGGACAGGGTGGGTATGGG+GGG - chr1_4:6073269-6073288 Msa0146420:intron 60.0%
CAACTTCACAGCCTCCTCCC+GGG - chr1_4:6073594-6073613 Msa0146420:intron 60.0%
GATCAGATCTTCCCGGGAGG+AGG + chr1_4:6073608-6073627 None:intergenic 60.0%
AGCTGCACCTGCTGAACCTG+AGG - chr1_4:6073789-6073808 Msa0146420:CDS 60.0%
GCAGGATGCTGCCACAGATC+AGG - chr1_4:6073822-6073841 Msa0146420:CDS 60.0%
GCTGCCACAGATCAGGCTTC+TGG - chr1_4:6073829-6073848 Msa0146420:CDS 60.0%
ACCGGCGGGAAGACTCTTCC+AGG - chr1_4:6070535-6070554 Msa0146420:three_prime_UTR 65.0%
GGCGGGAAGACTCTTCCAGG+TGG - chr1_4:6070538-6070557 Msa0146420:three_prime_UTR 65.0%
TGGACAGGGTGGGTATGGGG+GGG - chr1_4:6073270-6073289 Msa0146420:intron 65.0%
GCTGCAGCCTCAGGTTCAGC+AGG + chr1_4:6073799-6073818 None:intergenic 65.0%
ACCTGAGGCTGCAGCTGAGC+AGG - chr1_4:6073804-6073823 Msa0146420:CDS 65.0%
TCCTGCTCAGCTGCAGCCTC+AGG + chr1_4:6073808-6073827 None:intergenic 65.0%
ATCGGCGGTGAGACCGGCGA+TGG + chr1_4:6070714-6070733 None:intergenic 70.0%
ATCGCCGGTCTCACCGCCGA+TGG - chr1_4:6070713-6070732 Msa0146420:CDS 70.0%
ACGGCCATCGGCGGTGAGAC+CGG + chr1_4:6070720-6070739 None:intergenic 70.0%
!! GGTGCTGGTGGGGCTGACCA+AGG - chr1_4:6073865-6073884 Msa0146420:CDS 70.0%
GCTGGTGGGGCTGACCAAGG+TGG - chr1_4:6073868-6073887 Msa0146420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6070381 6074223 6070381 ID=Msa0146420;Name=Msa0146420
chr1_4 mRNA 6070381 6074223 6070381 ID=Msa0146420-mRNA-1;Parent=Msa0146420;Name=Msa0146420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|314|281
chr1_4 exon 6070381 6071189 6070381 ID=Msa0146420-mRNA-1:exon:2626;Parent=Msa0146420-mRNA-1
chr1_4 exon 6073760 6074223 6073760 ID=Msa0146420-mRNA-1:exon:2625;Parent=Msa0146420-mRNA-1
chr1_4 five_prime_UTR 6074111 6074223 6074111 ID=Msa0146420-mRNA-1:five_prime_utr;Parent=Msa0146420-mRNA-1
chr1_4 CDS 6073760 6074110 6073760 ID=Msa0146420-mRNA-1:cds;Parent=Msa0146420-mRNA-1
chr1_4 CDS 6070695 6071189 6070695 ID=Msa0146420-mRNA-1:cds;Parent=Msa0146420-mRNA-1
chr1_4 three_prime_UTR 6070381 6070694 6070381 ID=Msa0146420-mRNA-1:three_prime_utr;Parent=Msa0146420-mRNA-1
Gene Sequence

>Msa0146420

ATGTTTAGAAATCAATACGATACCGACGTAACAACATGGTCACCGGCGGGAAGACTCTTCCAGGTGGAATACGCCATGGAAGCAGTTAAGCAAGGTTCAGCAGCAATAGGTCTCCGATCCAAAACTCACGTGGTTCTCGCGTGTGTTAACAAAGCCAATTCTGAACTATCTTCTCATCAGAAGAAGATCTTCAAGGTTGATGATCATATCGGCGTTGCCATCGCCGGTCTCACCGCCGATGGCCGTGTTCTTTCCCGTTACATGAGATCTGAATGCATTAACTATAATTACACTTATGAATCTCCGCTTCCCGTTGGTAGACTCGTCGTTCAGCTCGCCGATAAGGCTCAGGTTTGCACTCAGCGATCATGGAAGCGTCCTTATGGCGTTGGACTTCTAGTAGCTGGATTAGATGAATCAGGGGCTCACCTCTATTACAACTGCCCAAGCGGAAACTATTTTGAATATCAGGCATTTGCAATCGGTTCACGCTCACAAGCTGCAAAGACATATTTGGAACGCAAATTTAACAACTTCACAGCCTCCTCCCGGGAAGATCTGATCAAAGATGCACTCATTGCAACTAGGGAGTCCTTGCAAGGTGAAAAGCTCAGGAGCTCCGTATGCACCATTGCTGTGGTTGGAGTTGGTGAGCCTTTCCACATTTTGGATCAGGAAACTGTTCAACAGTTAATTGATACTTTTGAGATTGTGAGGGAGGAAGAAGCTGCACCTGCTGAACCTGAGGCTGCAGCTGAGCAGGATGCTGCCACAGATCAGGCTTCTGGTGCAGATCAAAGTGGTGCTGGTGGGGCTGACCAAGGTGGTTCTCCAATGGAGATTTGA
Protein sequence

>Msa0146420

MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFNNFTASSREDLIKDALIATRESLQGEKLRSSVCTIAVVGVGEPFHILDQETVQQLIDTFEIVREEEAAPAEPEAAAEQDAATDQASGADQSGAGGADQGGSPMEI*