Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071010 | XP_013467775.1 | 97.483 | 596 | 15 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071010 | sp|Q8S4R4|CRTSO_SOLLC | 82.428 | 552 | 94 | 1 | 48 | 596 | 64 | 615 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071010 | A0A072VJ38 | 97.483 | 596 | 15 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023180 | Msa0071010 | 0.872985 | 2.087077e-67 | -8.615850e-47 |
| Msa0063850 | Msa0071010 | 0.804569 | 2.028389e-49 | -8.615850e-47 |
| Msa0071010 | Msa0082400 | 0.827367 | 1.626736e-54 | -8.615850e-47 |
| Msa0071010 | Msa0091340 | 0.814490 | 1.500505e-51 | -8.615850e-47 |
| Msa0071010 | Msa0092390 | 0.801173 | 1.020048e-48 | -8.615850e-47 |
| Msa0071010 | Msa0521190 | 0.809201 | 2.127015e-50 | -8.615850e-47 |
| Msa0071010 | Msa0541220 | 0.807114 | 5.919847e-50 | -8.615850e-47 |
| Msa0071010 | Msa0668000 | 0.803336 | 3.659457e-49 | -8.615850e-47 |
| Msa0071010 | Msa0814780 | 0.811034 | 8.568024e-51 | -8.615850e-47 |
| Msa0071010 | Msa0976280 | 0.800322 | 1.521767e-48 | -8.615850e-47 |
| Msa0071010 | Msa1113280 | 0.812969 | 3.243604e-51 | -8.615850e-47 |
| Msa0071010 | Msa1151970 | 0.819169 | 1.337323e-52 | -8.615850e-47 |
| Msa0071010 | Msa1184740 | 0.806281 | 8.877325e-50 | -8.615850e-47 |
| Msa0071010 | Msa1346220 | 0.801603 | 8.330223e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071010 | MtrunA17_Chr1g0176461 | 97.483 | 596 | 15 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1205 |
| Msa0071010 | MtrunA17_Chr0c12g0493641 | 31.588 | 554 | 322 | 19 | 66 | 584 | 51 | 582 | 1.89e-63 | 219 |
| Msa0071010 | MtrunA17_Chr4g0077041 | 36.667 | 210 | 122 | 7 | 354 | 557 | 26 | 230 | 4.65e-34 | 129 |
| Msa0071010 | MtrunA17_Chr1g0162681 | 23.105 | 541 | 340 | 19 | 79 | 557 | 23 | 549 | 2.89e-13 | 72.8 |
| Msa0071010 | MtrunA17_Chr8g0373291 | 23.971 | 559 | 344 | 18 | 79 | 572 | 22 | 564 | 9.66e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071010 | AT1G06820.1 | 87.849 | 502 | 61 | 0 | 79 | 580 | 78 | 579 | 0.0 | 923 |
| Msa0071010 | AT1G06820.3 | 86.588 | 507 | 66 | 1 | 79 | 585 | 78 | 582 | 0.0 | 913 |
| Msa0071010 | AT1G06820.4 | 87.330 | 442 | 56 | 0 | 139 | 580 | 19 | 460 | 0.0 | 814 |
| Msa0071010 | AT1G06820.2 | 87.204 | 422 | 54 | 0 | 79 | 500 | 78 | 499 | 0.0 | 766 |
| Msa0071010 | AT1G57770.1 | 31.330 | 549 | 327 | 19 | 73 | 586 | 41 | 574 | 2.98e-60 | 210 |
| Msa0071010 | AT5G49555.1 | 22.719 | 559 | 348 | 18 | 79 | 572 | 14 | 553 | 2.49e-15 | 79.7 |
Find 173 sgRNAs with CRISPR-Local
Find 433 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATACCTGGTGGGAGTTC+TGG | 0.127565 | 1_2:-42363366 | Msa0071010:CDS |
| GGGATTGGTGGGTTGGTTGC+TGG | 0.141035 | 1_2:-42363438 | Msa0071010:CDS |
| AGCTGCATAGAATCCGATTT+TGG | 0.213653 | 1_2:-42358004 | Msa0071010:three_prime_UTR |
| TGAAAGTTCTCTTCCTCTTT+TGG | 0.238566 | 1_2:+42359962 | None:intergenic |
| AGCATTTGATATTACGGTTT+TGG | 0.254832 | 1_2:+42360150 | None:intergenic |
| AATTGAGCATGGTTGGTTAA+TGG | 0.268735 | 1_2:+42363709 | None:intergenic |
| GGGTTTGATGCAATTGTTAT+TGG | 0.272864 | 1_2:-42363465 | Msa0071010:CDS |
| ATTGTAGGAAAGTTAGTAAA+AGG | 0.297392 | 1_2:-42359995 | Msa0071010:intron |
| TGGGTCTGGGATTGGTGGGT+TGG | 0.303657 | 1_2:-42363445 | Msa0071010:CDS |
| GTGGGATTAACTACCCTCTT+GGG | 0.310382 | 1_2:-42360405 | Msa0071010:CDS |
| TATATTCACAACTTCTTCAA+TGG | 0.321714 | 1_2:-42359647 | Msa0071010:CDS |
| TTATACCTGGTGGGAGTTCT+GGG | 0.324237 | 1_2:-42363365 | Msa0071010:CDS |
| GGATTGGTGGGTTGGTTGCT+GGG | 0.332135 | 1_2:-42363437 | Msa0071010:CDS |
| TACAAGTATAACTCTTTGTT+TGG | 0.332488 | 1_2:+42357922 | None:intergenic |
| GATGCAATTGTTATTGGGTC+TGG | 0.348955 | 1_2:-42363459 | Msa0071010:CDS |
| GCCCGTGACGAGGGTACTTA+TGG | 0.350068 | 1_2:-42359034 | Msa0071010:CDS |
| TCTGGTAGCATTTGATATTA+CGG | 0.350827 | 1_2:+42360144 | None:intergenic |
| GGTTTGATGCAATTGTTATT+GGG | 0.352695 | 1_2:-42363464 | Msa0071010:CDS |
| GGCATGCTGCTTGGGTTGCT+TGG | 0.354118 | 1_2:-42358316 | Msa0071010:CDS |
| CAACTACCTCAAGCACAAAA+TGG | 0.357692 | 1_2:+42359855 | None:intergenic |
| TTGTTTGGATAAAAGAAAAC+TGG | 0.361173 | 1_2:+42357937 | None:intergenic |
| CCAGTTGAATGCTTGACATT+AGG | 0.362918 | 1_2:-42362030 | Msa0071010:intron |
| CTAGAACAATTGGACCAGTT+TGG | 0.364549 | 1_2:-42359752 | Msa0071010:intron |
| GGTTAGAAACGGAGAGTATA+GGG | 0.364756 | 1_2:+42363685 | None:intergenic |
| TGCTGCTTGGGTTGCTTGGT+TGG | 0.365552 | 1_2:-42358312 | Msa0071010:CDS |
| CATCGAGTAGCTGCAGATAT+TGG | 0.371399 | 1_2:-42358760 | Msa0071010:intron |
| GGCAAAAGGTCTAGTTGATC+AGG | 0.375101 | 1_2:-42360356 | Msa0071010:CDS |
| GGGTGTGATGGTAGATGATG+GGG | 0.379033 | 1_2:+42363658 | None:intergenic |
| GTTATTGCTGTAGCTTTCTC+AGG | 0.379480 | 1_2:-42358796 | Msa0071010:CDS |
| GTTGGTTCTTCTGTTATGTT+TGG | 0.379751 | 1_2:-42363312 | Msa0071010:CDS |
| AAGTATCGTCGATGTGTCTT+AGG | 0.386513 | 1_2:+42359058 | None:intergenic |
| AGCATTCCAAAGGGGTTGTT+AGG | 0.391726 | 1_2:-42358998 | Msa0071010:CDS |
| ATTGTTATTGGGTCTGGGAT+TGG | 0.392967 | 1_2:-42363453 | Msa0071010:CDS |
| GGTAAAGATTGAAACTTTGT+AGG | 0.393664 | 1_2:+42363633 | None:intergenic |
| TGGTGGATAGTGGGAAGAGA+GGG | 0.394657 | 1_2:-42363500 | Msa0071010:CDS |
| TTAGAGAAGAAATTGTTTCC+AGG | 0.395116 | 1_2:-42359380 | Msa0071010:CDS |
| AGCATTCACCATAAAATTTG+AGG | 0.398663 | 1_2:+42362237 | None:intergenic |
| TGAAGGATATGACGACCTTC+AGG | 0.399654 | 1_2:+42359670 | None:intergenic |
| TGTGAAAGGTGCAAAAGTTT+TGG | 0.400396 | 1_2:-42363403 | Msa0071010:CDS |
| TTATTGGGTCTGGGATTGGT+GGG | 0.401354 | 1_2:-42363449 | Msa0071010:CDS |
| AAACTTACGGTTGTGTTAAA+CGG | 0.405692 | 1_2:+42358971 | None:intergenic |
| GTTGGAGACAGTTGCTTCCC+TGG | 0.408956 | 1_2:-42358826 | Msa0071010:CDS |
| ATGCAATTGTTATTGGGTCT+GGG | 0.415335 | 1_2:-42363458 | Msa0071010:CDS |
| GGCATTCCTAACAACCCCTT+TGG | 0.415481 | 1_2:+42358992 | None:intergenic |
| TCCATATGGTTCCTCCAAAC+TGG | 0.419387 | 1_2:+42359738 | None:intergenic |
| TGGTTAGAAACGGAGAGTAT+AGG | 0.420001 | 1_2:+42363684 | None:intergenic |
| TATTATTTGCCTCAAAATGC+TGG | 0.423282 | 1_2:-42361276 | Msa0071010:CDS |
| TTTGGAATGCTGCGTGGCAT+TGG | 0.424414 | 1_2:+42359010 | None:intergenic |
| CATAGCCAGGAAGTATATTC+AGG | 0.427849 | 1_2:-42361250 | Msa0071010:CDS |
| GCTACCAGATGGGACACATT+TGG | 0.431536 | 1_2:-42360130 | Msa0071010:intron |
| AGCAGCATGCCGTCCAAAAC+AGG | 0.432079 | 1_2:+42358328 | None:intergenic |
| TGGATCCTGAATATACTTCC+TGG | 0.432364 | 1_2:+42361245 | None:intergenic |
| GTTATTGGGTCTGGGATTGG+TGG | 0.434710 | 1_2:-42363450 | Msa0071010:CDS |
| TAATGCCATGAAAATGATAA+TGG | 0.437425 | 1_2:+42363776 | None:intergenic |
| AAATGAACGGTTGTCGGATC+AGG | 0.442725 | 1_2:+42362356 | None:intergenic |
| ACTTGCTTTCAGAGCATAGA+TGG | 0.443465 | 1_2:-42358859 | Msa0071010:intron |
| TGGTACTTATCTAGAACAAT+TGG | 0.444078 | 1_2:-42359762 | Msa0071010:intron |
| CTAACCAAATGTGTCCCATC+TGG | 0.445008 | 1_2:+42360126 | None:intergenic |
| GGGGTGTGATGGTAGATGAT+GGG | 0.445186 | 1_2:+42363657 | None:intergenic |
| ACACACAATATCAATGTAGA+TGG | 0.445616 | 1_2:-42357852 | Msa0071010:three_prime_UTR |
| GGTGGGATTAACTACCCTCT+TGG | 0.447475 | 1_2:-42360406 | Msa0071010:CDS |
| AAATGGTGACAATCTGTATC+TGG | 0.449846 | 1_2:+42359872 | None:intergenic |
| GAAAGTGATGATGTACTGTT+TGG | 0.456103 | 1_2:+42363883 | None:intergenic |
| TTCTTCAATGGACGATTGGC+AGG | 0.456294 | 1_2:-42359635 | Msa0071010:intron |
| ACCAGTTTGGAGGAACCATA+TGG | 0.456800 | 1_2:-42359739 | Msa0071010:CDS |
| GCTTAGCTGCGTGCCAATGC+GGG | 0.457813 | 1_2:-42358034 | Msa0071010:three_prime_UTR |
| AGTGAAAGGGATGGTGAAGT+TGG | 0.461843 | 1_2:-42363532 | Msa0071010:CDS |
| AAAATGCTGGAGCCATAGCC+AGG | 0.471308 | 1_2:-42361263 | Msa0071010:CDS |
| GTGGTGGATAGTGGGAAGAG+AGG | 0.471948 | 1_2:-42363501 | Msa0071010:CDS |
| TGGAGTCTGCAAAGCGTTGA+CGG | 0.473220 | 1_2:+42360983 | None:intergenic |
| AACCATGAAAATGAAGCAAT+CGG | 0.473947 | 1_2:+42363973 | None:intergenic |
| AAGATTGAAACTTTGTAGGT+GGG | 0.478712 | 1_2:+42363637 | None:intergenic |
| ACCATGCTAGCATTAATCAT+TGG | 0.478809 | 1_2:+42360963 | None:intergenic |
| TGGGATTAACTACCCTCTTG+GGG | 0.481634 | 1_2:-42360404 | Msa0071010:CDS |
| CCTAATGTCAAGCATTCAAC+TGG | 0.484755 | 1_2:+42362030 | None:intergenic |
| ATTTACACAGTTATAGAACT+AGG | 0.485783 | 1_2:-42358157 | Msa0071010:three_prime_UTR |
| CAACTTGATAACACAAGCAT+TGG | 0.487277 | 1_2:-42362408 | Msa0071010:CDS |
| ATAGGGGAATTGAGCATGGT+TGG | 0.488585 | 1_2:+42363702 | None:intergenic |
| TTATTTGTCGTCGTTCCACT+AGG | 0.489129 | 1_2:-42363829 | Msa0071010:five_prime_UTR |
| TTTCAATGCTCTGAATTCGT+TGG | 0.490246 | 1_2:-42362106 | Msa0071010:CDS |
| TGGGGTGTGATGGTAGATGA+TGG | 0.491055 | 1_2:+42363656 | None:intergenic |
| GCATGGTTGGTTAATGGAAG+TGG | 0.492990 | 1_2:+42363715 | None:intergenic |
| CACGAGTATTATCACCGAGC+AGG | 0.494330 | 1_2:-42360305 | Msa0071010:CDS |
| CAACTTCTTCAATGGACGAT+TGG | 0.495431 | 1_2:-42359639 | Msa0071010:CDS |
| AGGAGAATCACTGCCAAAAG+AGG | 0.498346 | 1_2:-42359975 | Msa0071010:CDS |
| ATGTGTATTGAAAGAAAAGA+TGG | 0.502132 | 1_2:+42359920 | None:intergenic |
| GGGACTCAGTTGGCTGTGAA+AGG | 0.502136 | 1_2:-42363417 | Msa0071010:CDS |
| AGTTACAGAAAGGAATATCT+TGG | 0.502589 | 1_2:+42357899 | None:intergenic |
| TCTTTACCTTCATGTAGCTA+TGG | 0.503305 | 1_2:-42363618 | Msa0071010:CDS |
| TCGCAATTTGATGCACAAGA+TGG | 0.505044 | 1_2:-42358056 | Msa0071010:three_prime_UTR |
| ATTGCAAAGTCCTTGGCAAA+AGG | 0.507882 | 1_2:-42360370 | Msa0071010:CDS |
| AAAGATTGAAACTTTGTAGG+TGG | 0.509708 | 1_2:+42363636 | None:intergenic |
| CTGAATATACTTCCTGGCTA+TGG | 0.509894 | 1_2:+42361251 | None:intergenic |
| CGAATATGAGGCAAAGAAGC+AGG | 0.510443 | 1_2:-42359429 | Msa0071010:CDS |
| AAGGTGACGGTGAAAGTGAA+AGG | 0.516101 | 1_2:-42363546 | Msa0071010:CDS |
| AGATGAAAATGAACGGTTGT+CGG | 0.517921 | 1_2:+42362350 | None:intergenic |
| GTTGGTTGCTGGGACTCAGT+TGG | 0.518251 | 1_2:-42363427 | Msa0071010:CDS |
| TTCTACCTCTATAAAATCGA+TGG | 0.521134 | 1_2:+42359346 | None:intergenic |
| ACTCGAACAGAGAGGTGGTT+TGG | 0.522462 | 1_2:+42362326 | None:intergenic |
| GAACAATTGGACCAGTTTGG+AGG | 0.525975 | 1_2:-42359749 | Msa0071010:CDS |
| ACTTTGTAGGTGGGGTGTGA+TGG | 0.526748 | 1_2:+42363646 | None:intergenic |
| GAAAGGGATGGTGAAGTTGG+AGG | 0.529091 | 1_2:-42363529 | Msa0071010:CDS |
| AAGAGAGGGGATTTAAGTGA+AGG | 0.529550 | 1_2:-42363486 | Msa0071010:CDS |
| ATGCCACGCAGCATTCCAAA+GGG | 0.532817 | 1_2:-42359007 | Msa0071010:CDS |
| ATAGATGGTCTTTACTGTGT+TGG | 0.534434 | 1_2:-42358844 | Msa0071010:CDS |
| ACTTACGGCTTTGCCCTGCT+CGG | 0.535017 | 1_2:+42360291 | None:intergenic |
| GACAGTTGCTTCCCTGGACA+AGG | 0.535454 | 1_2:-42358820 | Msa0071010:CDS |
| CTCATAAAATTGATTCCTAG+TGG | 0.536568 | 1_2:+42363814 | None:intergenic |
| TGTGTGACAGACACTTTGGT+GGG | 0.539652 | 1_2:-42360423 | Msa0071010:CDS |
| AAGAAGTTGTGAATATATGA+AGG | 0.541078 | 1_2:+42359653 | None:intergenic |
| ACAGCAATAACACCTTGTCC+AGG | 0.542134 | 1_2:+42358808 | None:intergenic |
| AATGAAATTGTCTGAAGAGA+GGG | 0.543378 | 1_2:-42364005 | Msa0071010:five_prime_UTR |
| GTCCATAAGTACCCTCGTCA+CGG | 0.543450 | 1_2:+42359032 | None:intergenic |
| GCTTGGTTGGTTAAGAACAT+TGG | 0.543596 | 1_2:-42358299 | Msa0071010:CDS |
| TTGGAGAAGTATGTTATACC+TGG | 0.544910 | 1_2:-42363378 | Msa0071010:CDS |
| TCGATGGATGATCTAAGACC+TGG | 0.552826 | 1_2:+42359362 | None:intergenic |
| GGTGGATAGTGGGAAGAGAG+GGG | 0.553096 | 1_2:-42363499 | Msa0071010:CDS |
| GGCTTAGCTGCGTGCCAATG+CGG | 0.553372 | 1_2:-42358035 | Msa0071010:three_prime_UTR |
| AGGTGACGGTGAAAGTGAAA+GGG | 0.554994 | 1_2:-42363545 | Msa0071010:CDS |
| TCCAATGATTAATGCTAGCA+TGG | 0.556512 | 1_2:-42360964 | Msa0071010:intron |
| TAATATCAAATGCTACCAGA+TGG | 0.557408 | 1_2:-42360141 | Msa0071010:CDS |
| AGATTGAAACTTTGTAGGTG+GGG | 0.558184 | 1_2:+42363638 | None:intergenic |
| TATGTTTGGTTTCAGTGACA+AGG | 0.559412 | 1_2:-42363298 | Msa0071010:intron |
| AGAGAGGGGATTTAAGTGAA+GGG | 0.561877 | 1_2:-42363485 | Msa0071010:CDS |
| TCTCTCAAGAATCGAATATG+AGG | 0.561899 | 1_2:-42359441 | Msa0071010:CDS |
| ACACAAGCATTGGAAGCAGT+TGG | 0.564007 | 1_2:-42362398 | Msa0071010:CDS |
| GGAAGCAGTTGGTTGTCAGA+TGG | 0.564032 | 1_2:-42362387 | Msa0071010:CDS |
| TTTACACAGTTATAGAACTA+GGG | 0.564228 | 1_2:-42358156 | Msa0071010:three_prime_UTR |
| TAAAATGCATAGTTACAGAA+AGG | 0.565180 | 1_2:+42357889 | None:intergenic |
| ATAGAACTAGGGCGTTCGAT+CGG | 0.570562 | 1_2:-42358145 | Msa0071010:three_prime_UTR |
| GTTAGAAACGGAGAGTATAG+GGG | 0.573897 | 1_2:+42363686 | None:intergenic |
| TGGTGGGATTGCAAAGTCCT+TGG | 0.575419 | 1_2:-42360377 | Msa0071010:CDS |
| AACTATAAATAATGTTACAC+AGG | 0.578612 | 1_2:+42358231 | None:intergenic |
| TCCATAAGTACCCTCGTCAC+GGG | 0.581708 | 1_2:+42359033 | None:intergenic |
| GTTCTGTGTGACAGACACTT+TGG | 0.585250 | 1_2:-42360427 | Msa0071010:CDS |
| AATGATGAATCAAGTATAGT+CGG | 0.590388 | 1_2:+42359697 | None:intergenic |
| AATATCAAATGCTACCAGAT+GGG | 0.590986 | 1_2:-42360140 | Msa0071010:CDS |
| AATGCCACGCAGCATTCCAA+AGG | 0.592149 | 1_2:-42359008 | Msa0071010:CDS |
| GATTCATCATTAGCTCCTGA+AGG | 0.593456 | 1_2:-42359685 | Msa0071010:CDS |
| CTGTGTGACAGACACTTTGG+TGG | 0.593994 | 1_2:-42360424 | Msa0071010:CDS |
| ACGAGTATTATCACCGAGCA+GGG | 0.595181 | 1_2:-42360304 | Msa0071010:CDS |
| CATGACCCAGATGAAAATTG+AGG | 0.599036 | 1_2:+42363591 | None:intergenic |
| GGTCTTCCATAGCTACATGA+AGG | 0.607346 | 1_2:+42363612 | None:intergenic |
| TCTTGTGCATCAAATTGCGA+TGG | 0.607687 | 1_2:+42358059 | None:intergenic |
| TAATGAAATTGTCTGAAGAG+AGG | 0.610111 | 1_2:-42364006 | None:intergenic |
| GTAGGAGTGAGGCTTTCAGA+TGG | 0.611899 | 1_2:-42360187 | Msa0071010:CDS |
| GGTGTGATGGTAGATGATGG+GGG | 0.615243 | 1_2:+42363659 | None:intergenic |
| GTTGGAGCTAAAATCGCTTG+AGG | 0.617285 | 1_2:-42362088 | Msa0071010:CDS |
| GGGATTAACTACCCTCTTGG+GGG | 0.619406 | 1_2:-42360403 | Msa0071010:CDS |
| ATGAAATTGTCTGAAGAGAG+GGG | 0.620511 | 1_2:-42364004 | Msa0071010:five_prime_UTR |
| AGCAGTTGGTTGTCAGATGG+AGG | 0.621877 | 1_2:-42362384 | Msa0071010:CDS |
| AGAAGTATGTTATACCTGGT+GGG | 0.622034 | 1_2:-42363374 | Msa0071010:CDS |
| GGGTAGTCAGATACTTTACA+AGG | 0.622656 | 1_2:-42360335 | Msa0071010:CDS |
| GCAAAAGGTCTAGTTGATCA+GGG | 0.623548 | 1_2:-42360355 | Msa0071010:CDS |
| GAGAAGTATGTTATACCTGG+TGG | 0.625923 | 1_2:-42363375 | Msa0071010:CDS |
| TCTATAACTGTGTAAATGCG+AGG | 0.632971 | 1_2:+42358163 | None:intergenic |
| CAGCAATAACACCTTGTCCA+GGG | 0.633374 | 1_2:+42358809 | None:intergenic |
| TAAAACCCAGAACTCCCACC+AGG | 0.637843 | 1_2:+42363360 | None:intergenic |
| GAGTATAGGGGAATTGAGCA+TGG | 0.637900 | 1_2:+42363698 | None:intergenic |
| TTGTTGGGGAGGGAGGAGAG+CGG | 0.643982 | 1_2:-42358189 | Msa0071010:three_prime_UTR |
| GCAGCTATAGAATCCCGCAT+TGG | 0.651693 | 1_2:+42358021 | None:intergenic |
| ACGATACTTAGCCCGTGACG+AGG | 0.654000 | 1_2:-42359044 | Msa0071010:CDS |
| GTTGTCTTTCATAGATGCCG+AGG | 0.659599 | 1_2:-42361217 | Msa0071010:intron |
| TGTGCACTCGAACAGAGAGG+TGG | 0.665428 | 1_2:+42362321 | None:intergenic |
| CGATACTTAGCCCGTGACGA+GGG | 0.667190 | 1_2:-42359043 | Msa0071010:CDS |
| GTTTGGTAGATGAAAATGAA+CGG | 0.671466 | 1_2:+42362343 | None:intergenic |
| GACGGTGAAAGTGAAAGGGA+TGG | 0.673142 | 1_2:-42363541 | Msa0071010:CDS |
| AACCCCTTTGGAATGCTGCG+TGG | 0.680893 | 1_2:+42359004 | None:intergenic |
| TCTATGAAAGACAACAACTG+TGG | 0.688384 | 1_2:+42361225 | None:intergenic |
| CTCTGTGCACTCGAACAGAG+AGG | 0.688933 | 1_2:+42362318 | None:intergenic |
| ATATGAGGCAAAGAAGCAGG+TGG | 0.709650 | 1_2:-42359426 | Msa0071010:CDS |
| TGGTGACAATCTGTATCTGG+TGG | 0.718339 | 1_2:+42359875 | None:intergenic |
| TGCCACGCAGCATTCCAAAG+GGG | 0.750458 | 1_2:-42359006 | Msa0071010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTTATTTTTAA+TGG | + | chr1_2:42357996-42358015 | None:intergenic | 0.0% |
| !! | ATAAAAATAAAAATGTAAAC+GGG | - | chr1_2:42358002-42358021 | Msa0071010:three_prime_UTR | 10.0% |
| !! | AAAAAAATTAATTACAAAAG+CGG | + | chr1_2:42359697-42359716 | None:intergenic | 10.0% |
| !!! | ATTATTTTAAAGTAAACTTA+CGG | + | chr1_2:42362899-42362918 | None:intergenic | 10.0% |
| !!! | ATTGTATTTTTATTTTTTGT+TGG | - | chr1_2:42363649-42363668 | Msa0071010:CDS | 10.0% |
| !!! | TTGTATTTTTATTTTTTGTT+GGG | - | chr1_2:42363650-42363669 | Msa0071010:CDS | 10.0% |
| !!! | TGTTTCTTTTGAAATAAAAA+AGG | - | chr1_2:42358581-42358600 | Msa0071010:intron | 15.0% |
| !!! | AATGTATTTTATCTTTTTCA+TGG | - | chr1_2:42359222-42359241 | Msa0071010:intron | 15.0% |
| !! | TAATTATTGTTTATGTTGAA+TGG | - | chr1_2:42359363-42359382 | Msa0071010:CDS | 15.0% |
| !! | ACTTATAATTCAAATAATTG+AGG | - | chr1_2:42360010-42360029 | Msa0071010:intron | 15.0% |
| !! | CTTATAATTCAAATAATTGA+GGG | - | chr1_2:42360011-42360030 | Msa0071010:intron | 15.0% |
| !! | AAAAAGATGTAACATTATTA+CGG | - | chr1_2:42360368-42360387 | Msa0071010:CDS | 15.0% |
| !!! | ATCAATATTTTCATATGATT+TGG | - | chr1_2:42360514-42360533 | Msa0071010:intron | 15.0% |
| !! | CATTTATTATGAAAATAATG+TGG | + | chr1_2:42360738-42360757 | None:intergenic | 15.0% |
| !! | AAAATTAATCAAATAAGAAG+CGG | + | chr1_2:42361399-42361418 | None:intergenic | 15.0% |
| !!! | AGATTTCAACTTTATTTTAT+TGG | + | chr1_2:42362268-42362287 | None:intergenic | 15.0% |
| !! | TAATATATTAAATGAGTGTT+TGG | + | chr1_2:42363370-42363389 | None:intergenic | 15.0% |
| !! | TTATTATTAAAAAATAGGGT+TGG | - | chr1_2:42363492-42363511 | Msa0071010:CDS | 15.0% |
| !!! | TGTATTTTTATTTTTTGTTG+GGG | - | chr1_2:42363651-42363670 | Msa0071010:CDS | 15.0% |
| !!! | CATGGTTTATTTTAGTATTT+TGG | - | chr1_2:42357897-42357916 | Msa0071010:three_prime_UTR | 20.0% |
| !!! | GTTTATTTTAGTATTTTGGT+GGG | - | chr1_2:42357901-42357920 | Msa0071010:three_prime_UTR | 20.0% |
| !!! | ACTGTTTTCATATAAGTTAT+AGG | + | chr1_2:42358987-42359006 | None:intergenic | 20.0% |
| !! | TTAAAAGTCTATATTTGTGA+TGG | - | chr1_2:42359719-42359738 | Msa0071010:CDS | 20.0% |
| !!! | ATTTGTTTGTTTTGAATATG+AGG | - | chr1_2:42359861-42359880 | Msa0071010:intron | 20.0% |
| !!! | ACTAATACTACCTTTAAAAT+TGG | + | chr1_2:42359910-42359929 | None:intergenic | 20.0% |
| !! | AAAAGATGTAACATTATTAC+GGG | - | chr1_2:42360369-42360388 | Msa0071010:CDS | 20.0% |
| !! | AATGCAATTGAAAATTTGAA+AGG | - | chr1_2:42360413-42360432 | Msa0071010:CDS | 20.0% |
| !! | ATGCAATTGAAAATTTGAAA+GGG | - | chr1_2:42360414-42360433 | Msa0071010:CDS | 20.0% |
| !!! | ATTTTCATTCATAAAATCTC+TGG | - | chr1_2:42360824-42360843 | Msa0071010:intron | 20.0% |
| !!! | TCTTTTCATCATTTTAGAAT+CGG | + | chr1_2:42361239-42361258 | None:intergenic | 20.0% |
| !! | AAATTAATCAAATAAGAAGC+GGG | + | chr1_2:42361398-42361417 | None:intergenic | 20.0% |
| !! | AAAATACAGCAAAATTAATG+AGG | + | chr1_2:42362547-42362566 | None:intergenic | 20.0% |
| !!! | TCTTCTCTCTTTTTTTTTTT+TGG | + | chr1_2:42362646-42362665 | None:intergenic | 20.0% |
| !! | ACACATAAATAATCAAGATT+TGG | + | chr1_2:42362723-42362742 | None:intergenic | 20.0% |
| !! | TAAAATAATGATTCAATGAC+AGG | - | chr1_2:42362910-42362929 | Msa0071010:intron | 20.0% |
| !! | AACTATAAATAATGTTACAC+AGG | + | chr1_2:42363626-42363645 | None:intergenic | 20.0% |
| !!! | AAAAGAAAATTTTGTAAAGC+TGG | - | chr1_2:42363758-42363777 | Msa0071010:five_prime_UTR | 20.0% |
| !!! | GGTTTATTTTAGTATTTTGG+TGG | - | chr1_2:42357900-42357919 | Msa0071010:three_prime_UTR | 25.0% |
| !! | GAATCAATTTTATGAGTAAG+TGG | - | chr1_2:42358047-42358066 | Msa0071010:three_prime_UTR | 25.0% |
| ! | TAATGCCATGAAAATGATAA+TGG | + | chr1_2:42358081-42358100 | None:intergenic | 25.0% |
| ! | AAATGCTCTTAGAAGAAAAA+AGG | - | chr1_2:42358289-42358308 | Msa0071010:exon | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr1_2:42358804-42358823 | Msa0071010:CDS | 25.0% |
| !! | TTAACACTTGTGATTTTGTT+AGG | - | chr1_2:42358873-42358892 | Msa0071010:intron | 25.0% |
| !! | TAACACTTGTGATTTTGTTA+GGG | - | chr1_2:42358874-42358893 | Msa0071010:intron | 25.0% |
| ! | TTTCTTAACTTACTTCTCAT+AGG | + | chr1_2:42359185-42359204 | None:intergenic | 25.0% |
| ! | ATGTACCTTAAATTTGTGTA+GGG | - | chr1_2:42359417-42359436 | Msa0071010:CDS | 25.0% |
| ! | AAAATTAATTACAAAAGCGG+AGG | + | chr1_2:42359694-42359713 | None:intergenic | 25.0% |
| !!! | TACCTTTAAAATTGGAGTTT+GGG | + | chr1_2:42359902-42359921 | None:intergenic | 25.0% |
| !! | TTCTTTGCATTTTCATTGAT+AGG | - | chr1_2:42359952-42359971 | Msa0071010:CDS | 25.0% |
| !! | TCTTTGCATTTTCATTGATA+GGG | - | chr1_2:42359953-42359972 | Msa0071010:CDS | 25.0% |
| ! | ATTGAGGGAAACTAAATAAA+CGG | - | chr1_2:42360026-42360045 | Msa0071010:intron | 25.0% |
| ! | TCAATTTGGTCCTATATTTA+GGG | + | chr1_2:42360217-42360236 | None:intergenic | 25.0% |
| ! | TGCAATTGAAAATTTGAAAG+GGG | - | chr1_2:42360415-42360434 | Msa0071010:CDS | 25.0% |
| ! | TATAAAAAGGAGGTAGTATA+TGG | - | chr1_2:42360441-42360460 | Msa0071010:intron | 25.0% |
| ! | TATTGATACAATGCTCAATT+AGG | + | chr1_2:42360501-42360520 | None:intergenic | 25.0% |
| !! | TGATGATGTACGTTATTATA+TGG | - | chr1_2:42360550-42360569 | Msa0071010:intron | 25.0% |
| ! | TGACTCTTTCTATGAAAAAT+AGG | + | chr1_2:42360702-42360721 | None:intergenic | 25.0% |
| ! | GAATGATTAATGAATGAGTA+GGG | + | chr1_2:42360781-42360800 | None:intergenic | 25.0% |
| ! | TGAATGATTAATGAATGAGT+AGG | + | chr1_2:42360782-42360801 | None:intergenic | 25.0% |
| ! | GAATGAAAATTACTAATCAC+AGG | + | chr1_2:42360814-42360833 | None:intergenic | 25.0% |
| !! | ATTTGATTAATTTTGTGTCC+AGG | - | chr1_2:42361405-42361424 | Msa0071010:intron | 25.0% |
| ! | ATTGTAGGAAAGTTAGTAAA+AGG | - | chr1_2:42361859-42361878 | Msa0071010:intron | 25.0% |
| ! | ATGTGTATTGAAAGAAAAGA+TGG | + | chr1_2:42361937-42361956 | None:intergenic | 25.0% |
| !! | ATCTTTTCTTTCAATACACA+TGG | - | chr1_2:42361936-42361955 | Msa0071010:intron | 25.0% |
| !! | TCTTTTCTTTCAATACACAT+GGG | - | chr1_2:42361937-42361956 | Msa0071010:intron | 25.0% |
| ! | GCTATATAGATTTATAGTTG+AGG | + | chr1_2:42362032-42362051 | None:intergenic | 25.0% |
| ! | TCATTCATTCAAAGTTATCA+AGG | + | chr1_2:42362054-42362073 | None:intergenic | 25.0% |
| !! | GATAACTTTTTGTATTTCAC+TGG | - | chr1_2:42362072-42362091 | Msa0071010:CDS | 25.0% |
| ! | AATGATGAATCAAGTATAGT+CGG | + | chr1_2:42362160-42362179 | None:intergenic | 25.0% |
| ! | AAGAAGTTGTGAATATATGA+AGG | + | chr1_2:42362204-42362223 | None:intergenic | 25.0% |
| ! | TATATTCACAACTTCTTCAA+TGG | - | chr1_2:42362207-42362226 | Msa0071010:intron | 25.0% |
| !!! | AAAAGGTATTTTTGAAGTCA+TGG | + | chr1_2:42362309-42362328 | None:intergenic | 25.0% |
| ! | AGGCAAATGAATAAAAAAGA+AGG | + | chr1_2:42362342-42362361 | None:intergenic | 25.0% |
| !!! | ATTTTGAGATTTACATGTAC+AGG | + | chr1_2:42362362-42362381 | None:intergenic | 25.0% |
| !! | AAAAAGCTTTTAACAACGTA+TGG | + | chr1_2:42362577-42362596 | None:intergenic | 25.0% |
| ! | AAGACAAATTATGTCTTCTA+GGG | + | chr1_2:42362621-42362640 | None:intergenic | 25.0% |
| ! | TGACATATTTATATCGTGTT+TGG | - | chr1_2:42363245-42363264 | Msa0071010:intron | 25.0% |
| !! | ACTCATTTGAATGTAGTTTT+AGG | + | chr1_2:42363277-42363296 | None:intergenic | 25.0% |
| ! | CATTGAAATAAACAAAAGCA+CGG | + | chr1_2:42363342-42363361 | None:intergenic | 25.0% |
| !!! | TGCTTTTGTTTATTTCAATG+TGG | - | chr1_2:42363342-42363361 | Msa0071010:CDS | 25.0% |
| !!! | ATTTTTATTTTTTGTTGGGG+AGG | - | chr1_2:42363654-42363673 | Msa0071010:CDS | 25.0% |
| !!! | TTTTTATTTTTTGTTGGGGA+GGG | - | chr1_2:42363655-42363674 | Msa0071010:CDS | 25.0% |
| ! | ATTTACACAGTTATAGAACT+AGG | - | chr1_2:42363697-42363716 | Msa0071010:CDS | 25.0% |
| ! | TTTACACAGTTATAGAACTA+GGG | - | chr1_2:42363698-42363717 | Msa0071010:CDS | 25.0% |
| ! | TTGTTTGGATAAAAGAAAAC+TGG | + | chr1_2:42363920-42363939 | None:intergenic | 25.0% |
| ! | TACAAGTATAACTCTTTGTT+TGG | + | chr1_2:42363935-42363954 | None:intergenic | 25.0% |
| ! | TAAAATGCATAGTTACAGAA+AGG | + | chr1_2:42363968-42363987 | None:intergenic | 25.0% |
| AACCATGAAAATGAAGCAAT+CGG | + | chr1_2:42357884-42357903 | None:intergenic | 30.0% | |
| !!! | TATTTTAGTATTTTGGTGGG+TGG | - | chr1_2:42357904-42357923 | Msa0071010:three_prime_UTR | 30.0% |
| !!! | ATTTTAGTATTTTGGTGGGT+GGG | - | chr1_2:42357905-42357924 | Msa0071010:three_prime_UTR | 30.0% |
| ! | CTCATAAAATTGATTCCTAG+TGG | + | chr1_2:42358043-42358062 | None:intergenic | 30.0% |
| ! | CTTCACCATTATCATTTTCA+TGG | - | chr1_2:42358073-42358092 | Msa0071010:three_prime_UTR | 30.0% |
| AAGATTGAAACTTTGTAGGT+GGG | + | chr1_2:42358220-42358239 | None:intergenic | 30.0% | |
| AAAGATTGAAACTTTGTAGG+TGG | + | chr1_2:42358221-42358240 | None:intergenic | 30.0% | |
| GGTAAAGATTGAAACTTTGT+AGG | + | chr1_2:42358224-42358243 | None:intergenic | 30.0% | |
| TCTTAGAAGAAAAAAGGTGA+CGG | - | chr1_2:42358295-42358314 | Msa0071010:CDS | 30.0% | |
| ! | GGTTTGATGCAATTGTTATT+GGG | - | chr1_2:42358390-42358409 | Msa0071010:intron | 30.0% |
| AGAGTTCAATGTTATAGTGA+AGG | - | chr1_2:42358620-42358639 | Msa0071010:intron | 30.0% | |
| ! | TCTAAGGTAGCTTATGAAAA+CGG | - | chr1_2:42358681-42358700 | Msa0071010:intron | 30.0% |
| ! | TTTATCCAAACATGGCTTTA+AGG | - | chr1_2:42358812-42358831 | Msa0071010:CDS | 30.0% |
| ATAAGCTAGAAAACAACTGA+TGG | + | chr1_2:42358929-42358948 | None:intergenic | 30.0% | |
| GCTTATATCTATAAGTTCTC+CGG | - | chr1_2:42358943-42358962 | Msa0071010:intron | 30.0% | |
| CTTATATCTATAAGTTCTCC+GGG | - | chr1_2:42358944-42358963 | Msa0071010:intron | 30.0% | |
| CGCTAATATCATAAGTACTT+AGG | + | chr1_2:42359030-42359049 | None:intergenic | 30.0% | |
| TATTGTGCTTATGCATTAGT+AGG | + | chr1_2:42359077-42359096 | None:intergenic | 30.0% | |
| AGTTAAGAAACCAAGAACAA+AGG | - | chr1_2:42359195-42359214 | Msa0071010:intron | 30.0% | |
| TACATTTACACCTTTGTTCT+TGG | + | chr1_2:42359208-42359227 | None:intergenic | 30.0% | |
| CAGAAATCAATCTTTACCTA+AGG | + | chr1_2:42359270-42359289 | None:intergenic | 30.0% | |
| ! | CTACACAAATTTAAGGTACA+TGG | + | chr1_2:42359418-42359437 | None:intergenic | 30.0% |
| CATGTACCTTAAATTTGTGT+AGG | - | chr1_2:42359416-42359435 | Msa0071010:CDS | 30.0% | |
| GATTACCCTACACAAATTTA+AGG | + | chr1_2:42359425-42359444 | None:intergenic | 30.0% | |
| GTTTGGTAGATGAAAATGAA+CGG | + | chr1_2:42359514-42359533 | None:intergenic | 30.0% | |
| !! | AAGTTATTTTCCCCATGAAA+AGG | - | chr1_2:42359587-42359606 | Msa0071010:intron | 30.0% |
| AGCATTCACCATAAAATTTG+AGG | + | chr1_2:42359620-42359639 | None:intergenic | 30.0% | |
| ! | TCAAATTTTATGGTGAATGC+TGG | - | chr1_2:42359619-42359638 | Msa0071010:intron | 30.0% |
| TCTGAAAAAACTGTCCAAAA+AGG | + | chr1_2:42359802-42359821 | None:intergenic | 30.0% | |
| !! | CTACCTTTAAAATTGGAGTT+TGG | + | chr1_2:42359903-42359922 | None:intergenic | 30.0% |
| ! | ATTTTCATTGATAGGGACTA+GGG | - | chr1_2:42359960-42359979 | Msa0071010:CDS | 30.0% |
| GTCAATTTGGTCCTATATTT+AGG | + | chr1_2:42360218-42360237 | None:intergenic | 30.0% | |
| AAATATAGGACCAAATTGAC+CGG | - | chr1_2:42360218-42360237 | Msa0071010:intron | 30.0% | |
| ! | TTGAAAGGGGTCTTATAAAA+AGG | - | chr1_2:42360428-42360447 | Msa0071010:CDS | 30.0% |
| TACATCATCAGAAAAGCAAA+TGG | + | chr1_2:42360540-42360559 | None:intergenic | 30.0% | |
| !!! | AGCATTTTGAGGCAAATAAT+AGG | + | chr1_2:42360579-42360598 | None:intergenic | 30.0% |
| TATTATTTGCCTCAAAATGC+TGG | - | chr1_2:42360578-42360597 | Msa0071010:intron | 30.0% | |
| ATGAAAGAAAGCAAAAAGCT+AGG | + | chr1_2:42360927-42360946 | None:intergenic | 30.0% | |
| AGTACAATAAGAACATTGCA+TGG | + | chr1_2:42360951-42360970 | None:intergenic | 30.0% | |
| TGCAACTAAAAGCAATGAAA+GGG | + | chr1_2:42361004-42361023 | None:intergenic | 30.0% | |
| ATGCAACTAAAAGCAATGAA+AGG | + | chr1_2:42361005-42361024 | None:intergenic | 30.0% | |
| !! | TTCATTGCTTTTAGTTGCAT+TGG | - | chr1_2:42361005-42361024 | Msa0071010:intron | 30.0% |
| ! | GACAAAAAAGCATACAATGT+TGG | + | chr1_2:42361092-42361111 | None:intergenic | 30.0% |
| !!! | CATTGTATGCTTTTTTGTCT+TGG | - | chr1_2:42361093-42361112 | Msa0071010:intron | 30.0% |
| ! | TGTCTTGGTAACTATACAAA+TGG | - | chr1_2:42361108-42361127 | Msa0071010:intron | 30.0% |
| ! | GTAATCTGATATGTCACTTA+CGG | + | chr1_2:42361581-42361600 | None:intergenic | 30.0% |
| ! | GATTTGTACTATACTTTTGC+AGG | - | chr1_2:42361645-42361664 | Msa0071010:intron | 30.0% |
| ! | AGCATTTGATATTACGGTTT+TGG | + | chr1_2:42361707-42361726 | None:intergenic | 30.0% |
| TCTGGTAGCATTTGATATTA+CGG | + | chr1_2:42361713-42361732 | None:intergenic | 30.0% | |
| TAATATCAAATGCTACCAGA+TGG | - | chr1_2:42361713-42361732 | Msa0071010:intron | 30.0% | |
| AATATCAAATGCTACCAGAT+GGG | - | chr1_2:42361714-42361733 | Msa0071010:intron | 30.0% | |
| AATGAAGGTAGACAAAAAAC+AGG | + | chr1_2:42361808-42361827 | None:intergenic | 30.0% | |
| CGGGATTAACTAATTAATGA+AGG | + | chr1_2:42361823-42361842 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTCAATACACATG+GGG | - | chr1_2:42361938-42361957 | Msa0071010:intron | 30.0% |
| ! | TTTTCTTTCAATACACATGG+GGG | - | chr1_2:42361939-42361958 | Msa0071010:intron | 30.0% |
| ! | TGGTACTTATCTAGAACAAT+TGG | - | chr1_2:42362092-42362111 | Msa0071010:CDS | 30.0% |
| CTCAAAAAGATACTTCCATA+TGG | + | chr1_2:42362133-42362152 | None:intergenic | 30.0% | |
| !!! | ATGTTCTTGTTTTCTGTTCT+AGG | - | chr1_2:42362389-42362408 | Msa0071010:CDS | 30.0% |
| !!! | TGTTCTTGTTTTCTGTTCTA+GGG | - | chr1_2:42362390-42362409 | Msa0071010:CDS | 30.0% |
| TTAGAGAAGAAATTGTTTCC+AGG | - | chr1_2:42362474-42362493 | Msa0071010:intron | 30.0% | |
| !!! | ATCATCCATCGATTTTATAG+AGG | - | chr1_2:42362503-42362522 | Msa0071010:intron | 30.0% |
| TTCTACCTCTATAAAATCGA+TGG | + | chr1_2:42362511-42362530 | None:intergenic | 30.0% | |
| TACAGCAAAATTAATGAGGT+CGG | + | chr1_2:42362543-42362562 | None:intergenic | 30.0% | |
| CAAGACAAATTATGTCTTCT+AGG | + | chr1_2:42362622-42362641 | None:intergenic | 30.0% | |
| AAACTTACGGTTGTGTTAAA+CGG | + | chr1_2:42362886-42362905 | None:intergenic | 30.0% | |
| ATTCAAATGAGTTTCAACGT+GGG | - | chr1_2:42363285-42363304 | Msa0071010:intron | 30.0% | |
| AGTTACAGAAAGGAATATCT+TGG | + | chr1_2:42363958-42363977 | None:intergenic | 30.0% | |
| ! | TTCCGATTGCTTCATTTTCA+TGG | - | chr1_2:42357879-42357898 | Msa0071010:three_prime_UTR | 35.0% |
| !!! | TTTTAGTATTTTGGTGGGTG+GGG | - | chr1_2:42357906-42357925 | Msa0071010:three_prime_UTR | 35.0% |
| ! | GAAAGTGATGATGTACTGTT+TGG | + | chr1_2:42357974-42357993 | None:intergenic | 35.0% |
| ! | AATTGAGCATGGTTGGTTAA+TGG | + | chr1_2:42358148-42358167 | None:intergenic | 35.0% |
| AGATTGAAACTTTGTAGGTG+GGG | + | chr1_2:42358219-42358238 | None:intergenic | 35.0% | |
| TCTTTACCTTCATGTAGCTA+TGG | - | chr1_2:42358236-42358255 | Msa0071010:three_prime_UTR | 35.0% | |
| ! | GAAGACCTCAATTTTCATCT+GGG | - | chr1_2:42358258-42358277 | Msa0071010:three_prime_UTR | 35.0% |
| GGGTTTGATGCAATTGTTAT+TGG | - | chr1_2:42358389-42358408 | Msa0071010:intron | 35.0% | |
| ! | ATGCAATTGTTATTGGGTCT+GGG | - | chr1_2:42358396-42358415 | Msa0071010:intron | 35.0% |
| !! | TGTGAAAGGTGCAAAAGTTT+TGG | - | chr1_2:42358451-42358470 | Msa0071010:intron | 35.0% |
| !!! | AGGTGCAAAAGTTTTGGTTT+TGG | - | chr1_2:42358457-42358476 | Msa0071010:intron | 35.0% |
| ! | TTGGAGAAGTATGTTATACC+TGG | - | chr1_2:42358476-42358495 | Msa0071010:intron | 35.0% |
| ! | AGAAGTATGTTATACCTGGT+GGG | - | chr1_2:42358480-42358499 | Msa0071010:intron | 35.0% |
| !!! | GAGTTCTGGGTTTTATCATA+GGG | - | chr1_2:42358502-42358521 | Msa0071010:intron | 35.0% |
| ! | GTTGGTTCTTCTGTTATGTT+TGG | - | chr1_2:42358542-42358561 | Msa0071010:intron | 35.0% |
| ! | TATGTTTGGTTTCAGTGACA+AGG | - | chr1_2:42358556-42358575 | Msa0071010:intron | 35.0% |
| AACAACTTCTATGCTCTCTA+AGG | - | chr1_2:42358665-42358684 | Msa0071010:intron | 35.0% | |
| !! | GCTTTAAGGTCTGTTTAGAT+TGG | - | chr1_2:42358826-42358845 | Msa0071010:CDS | 35.0% |
| TCACAAGTGTTAATGCTAGT+AGG | + | chr1_2:42358866-42358885 | None:intergenic | 35.0% | |
| GTTTCGTTCAAAATCTATCC+CGG | + | chr1_2:42358965-42358984 | None:intergenic | 35.0% | |
| TTAATTAAGCTGTGTATCCC+AGG | - | chr1_2:42359051-42359070 | Msa0071010:CDS | 35.0% | |
| ! | ATGCCATTGTTATTAGCTAG+TGG | - | chr1_2:42359113-42359132 | Msa0071010:intron | 35.0% |
| ATCTACTTCTCCCTAATGAA+AGG | - | chr1_2:42359155-42359174 | Msa0071010:intron | 35.0% | |
| CATAGGACTTCCTTTCATTA+GGG | + | chr1_2:42359168-42359187 | None:intergenic | 35.0% | |
| TCATAGGACTTCCTTTCATT+AGG | + | chr1_2:42359169-42359188 | None:intergenic | 35.0% | |
| ! | CCTCAAGCTATTATTGACTA+AGG | + | chr1_2:42359333-42359352 | None:intergenic | 35.0% |
| CCTTAGTCAATAATAGCTTG+AGG | - | chr1_2:42359330-42359349 | Msa0071010:intron | 35.0% | |
| ! | CAACTTGATAACACAAGCAT+TGG | - | chr1_2:42359446-42359465 | Msa0071010:CDS | 35.0% |
| AGATGAAAATGAACGGTTGT+CGG | + | chr1_2:42359507-42359526 | None:intergenic | 35.0% | |
| ! | TATTTTCCCCATGAAAAGGA+CGG | - | chr1_2:42359591-42359610 | Msa0071010:intron | 35.0% |
| ! | ATTTTATGGTGAATGCTGGA+AGG | - | chr1_2:42359623-42359642 | Msa0071010:intron | 35.0% |
| TGGAAGGTTTGTCTTAATTG+AGG | - | chr1_2:42359639-42359658 | Msa0071010:CDS | 35.0% | |
| ! | TTTCAATGCTCTGAATTCGT+TGG | - | chr1_2:42359748-42359767 | Msa0071010:CDS | 35.0% |
| ! | CTCCCAAACTCCAATTTTAA+AGG | - | chr1_2:42359897-42359916 | Msa0071010:CDS | 35.0% |
| ! | TATTAGTTTCTATTGCCACC+TGG | - | chr1_2:42359923-42359942 | Msa0071010:CDS | 35.0% |
| AAATGCAAAGAAGATATGCC+AGG | + | chr1_2:42359944-42359963 | None:intergenic | 35.0% | |
| ! | CATTTTCATTGATAGGGACT+AGG | - | chr1_2:42359959-42359978 | Msa0071010:CDS | 35.0% |
| AAGTGAAGCAGTATTACTCT+TGG | - | chr1_2:42360095-42360114 | Msa0071010:intron | 35.0% | |
| TTTGTGTACCCGAATTCATA+TGG | - | chr1_2:42360123-42360142 | Msa0071010:intron | 35.0% | |
| GTTGTCTACCATATGAATTC+GGG | + | chr1_2:42360134-42360153 | None:intergenic | 35.0% | |
| GGTTGTCTACCATATGAATT+CGG | + | chr1_2:42360135-42360154 | None:intergenic | 35.0% | |
| AACTCATTCTCTCTCTTGAA+GGG | + | chr1_2:42360313-42360332 | None:intergenic | 35.0% | |
| AAACTCATTCTCTCTCTTGA+AGG | + | chr1_2:42360314-42360333 | None:intergenic | 35.0% | |
| TAACATTATTACGGGTTTGC+TGG | - | chr1_2:42360377-42360396 | Msa0071010:CDS | 35.0% | |
| ! | AAAGGGGTCTTATAAAAAGG+AGG | - | chr1_2:42360431-42360450 | Msa0071010:intron | 35.0% |
| TCTATGAAAGACAACAACTG+TGG | + | chr1_2:42360632-42360651 | None:intergenic | 35.0% | |
| ATAACTAGTTGCATCTACCT+CGG | + | chr1_2:42360657-42360676 | None:intergenic | 35.0% | |
| ! | GTTATTTCGATTCTGTCAGA+AGG | - | chr1_2:42360672-42360691 | Msa0071010:intron | 35.0% |
| TCCAATGATTAATGCTAGCA+TGG | - | chr1_2:42360890-42360909 | Msa0071010:intron | 35.0% | |
| ACCATGCTAGCATTAATCAT+TGG | + | chr1_2:42360894-42360913 | None:intergenic | 35.0% | |
| AAAGCATACAATGTTGGACT+TGG | + | chr1_2:42361086-42361105 | None:intergenic | 35.0% | |
| CAAAACATCGTACACAACAA+TGG | + | chr1_2:42361187-42361206 | None:intergenic | 35.0% | |
| ! | CATTGTTGTGTACGATGTTT+TGG | - | chr1_2:42361185-42361204 | Msa0071010:intron | 35.0% |
| ! | TGTACTATACTTTTGCAGGT+AGG | - | chr1_2:42361649-42361668 | Msa0071010:intron | 35.0% |
| ! | TGAAAGTTCTCTTCCTCTTT+TGG | + | chr1_2:42361895-42361914 | None:intergenic | 35.0% |
| AAATGGTGACAATCTGTATC+TGG | + | chr1_2:42361985-42362004 | None:intergenic | 35.0% | |
| !! | TTTTATTGGTAACCACTGCT+CGG | + | chr1_2:42362254-42362273 | None:intergenic | 35.0% |
| ! | AAGAAGGCACAGCATAAAAA+AGG | + | chr1_2:42362326-42362345 | None:intergenic | 35.0% |
| TCTCTCAAGAATCGAATATG+AGG | - | chr1_2:42362413-42362432 | Msa0071010:CDS | 35.0% | |
| ATAGATGGTCTTTACTGTGT+TGG | - | chr1_2:42363010-42363029 | Msa0071010:intron | 35.0% | |
| TTGCAAACAGTTTACAGCTA+TGG | + | chr1_2:42363140-42363159 | None:intergenic | 35.0% | |
| CATTCAAATGAGTTTCAACG+TGG | - | chr1_2:42363284-42363303 | Msa0071010:intron | 35.0% | |
| !! | AAAAAGTCACCTGTTTTGGA+CGG | - | chr1_2:42363517-42363536 | Msa0071010:CDS | 35.0% |
| TCTATAACTGTGTAAATGCG+AGG | + | chr1_2:42363694-42363713 | None:intergenic | 35.0% | |
| !!! | TTTAGTATTTTGGTGGGTGG+GGG | - | chr1_2:42357907-42357926 | Msa0071010:three_prime_UTR | 40.0% |
| TTATTTGTCGTCGTTCCACT+AGG | - | chr1_2:42358025-42358044 | Msa0071010:three_prime_UTR | 40.0% | |
| ! | GTTAGAAACGGAGAGTATAG+GGG | + | chr1_2:42358171-42358190 | None:intergenic | 40.0% |
| ! | GGTTAGAAACGGAGAGTATA+GGG | + | chr1_2:42358172-42358191 | None:intergenic | 40.0% |
| ! | TGGTTAGAAACGGAGAGTAT+AGG | + | chr1_2:42358173-42358192 | None:intergenic | 40.0% |
| ! | GGAAGACCTCAATTTTCATC+TGG | - | chr1_2:42358257-42358276 | Msa0071010:three_prime_UTR | 40.0% |
| CATGACCCAGATGAAAATTG+AGG | + | chr1_2:42358266-42358285 | None:intergenic | 40.0% | |
| !! | AGGAAAAAGTGGTGGATAGT+GGG | - | chr1_2:42358345-42358364 | Msa0071010:CDS | 40.0% |
| AAGAGAGGGGATTTAAGTGA+AGG | - | chr1_2:42358368-42358387 | Msa0071010:intron | 40.0% | |
| AGAGAGGGGATTTAAGTGAA+GGG | - | chr1_2:42358369-42358388 | Msa0071010:intron | 40.0% | |
| ! | GATGCAATTGTTATTGGGTC+TGG | - | chr1_2:42358395-42358414 | Msa0071010:intron | 40.0% |
| ! | ATTGTTATTGGGTCTGGGAT+TGG | - | chr1_2:42358401-42358420 | Msa0071010:intron | 40.0% |
| ! | GAGAAGTATGTTATACCTGG+TGG | - | chr1_2:42358479-42358498 | Msa0071010:intron | 40.0% |
| !!! | GGAGTTCTGGGTTTTATCAT+AGG | - | chr1_2:42358501-42358520 | Msa0071010:intron | 40.0% |
| !! | TTCTGGGTTTTATCATAGGG+AGG | - | chr1_2:42358505-42358524 | Msa0071010:intron | 40.0% |
| !! | TCTGGGTTTTATCATAGGGA+GGG | - | chr1_2:42358506-42358525 | Msa0071010:intron | 40.0% |
| !! | GAGGGGTATACTTTTGATGT+TGG | - | chr1_2:42358524-42358543 | Msa0071010:intron | 40.0% |
| ACAGACCTTAAAGCCATGTT+TGG | + | chr1_2:42358820-42358839 | None:intergenic | 40.0% | |
| ! | GTGCCACTAGCTAATAACAA+TGG | + | chr1_2:42359119-42359138 | None:intergenic | 40.0% |
| TCTTTACCTAAGGCAACTCA+TGG | + | chr1_2:42359260-42359279 | None:intergenic | 40.0% | |
| ! | GACGGCATCCTCAAATTTTA+TGG | - | chr1_2:42359609-42359628 | Msa0071010:intron | 40.0% |
| AACTGTCCAAAAAGGTAGAG+TGG | + | chr1_2:42359794-42359813 | None:intergenic | 40.0% | |
| CCTAATGTCAAGCATTCAAC+TGG | + | chr1_2:42359827-42359846 | None:intergenic | 40.0% | |
| CCAGTTGAATGCTTGACATT+AGG | - | chr1_2:42359824-42359843 | Msa0071010:intron | 40.0% | |
| !! | ACAACCTGTGTCGACTTATA+TGG | - | chr1_2:42360149-42360168 | Msa0071010:CDS | 40.0% |
| TCATCCATATAAGTCGACAC+AGG | + | chr1_2:42360156-42360175 | None:intergenic | 40.0% | |
| CCTATATTTAGGGATAGAGG+TGG | + | chr1_2:42360207-42360226 | None:intergenic | 40.0% | |
| CCACCTCTATCCCTAAATAT+AGG | - | chr1_2:42360204-42360223 | Msa0071010:intron | 40.0% | |
| GGTCCTATATTTAGGGATAG+AGG | + | chr1_2:42360210-42360229 | None:intergenic | 40.0% | |
| CATTCTGAATTCCCATGATC+CGG | + | chr1_2:42360240-42360259 | None:intergenic | 40.0% | |
| GGAATTCAGAATGTTGCTAC+TGG | - | chr1_2:42360247-42360266 | Msa0071010:intron | 40.0% | |
| CTGAATATACTTCCTGGCTA+TGG | + | chr1_2:42360606-42360625 | None:intergenic | 40.0% | |
| ! | CATAGCCAGGAAGTATATTC+AGG | - | chr1_2:42360604-42360623 | Msa0071010:intron | 40.0% |
| TGGATCCTGAATATACTTCC+TGG | + | chr1_2:42360612-42360631 | None:intergenic | 40.0% | |
| ! | TCACTGTCATTCTAGCTATC+TGG | + | chr1_2:42361051-42361070 | None:intergenic | 40.0% |
| CGTACACAACAATGGAAGAA+TGG | + | chr1_2:42361179-42361198 | None:intergenic | 40.0% | |
| !! | AGAAGCACCTTTGGAAATGT+AGG | - | chr1_2:42361265-42361284 | Msa0071010:CDS | 40.0% |
| ! | GAAGCACCTTTGGAAATGTA+GGG | - | chr1_2:42361266-42361285 | Msa0071010:CDS | 40.0% |
| TGTCATCCCTACATTTCCAA+AGG | + | chr1_2:42361275-42361294 | None:intergenic | 40.0% | |
| ATTGCAAAGTCCTTGGCAAA+AGG | - | chr1_2:42361484-42361503 | Msa0071010:intron | 40.0% | |
| ! | ATCAACTAGACCTTTTGCCA+AGG | + | chr1_2:42361497-42361516 | None:intergenic | 40.0% |
| GCAAAAGGTCTAGTTGATCA+GGG | - | chr1_2:42361499-42361518 | Msa0071010:intron | 40.0% | |
| GGGTAGTCAGATACTTTACA+AGG | - | chr1_2:42361519-42361538 | Msa0071010:intron | 40.0% | |
| ! | TTGTCACCATTTTGTGCTTG+AGG | - | chr1_2:42361993-42362012 | Msa0071010:intron | 40.0% |
| CAACTACCTCAAGCACAAAA+TGG | + | chr1_2:42362002-42362021 | None:intergenic | 40.0% | |
| ! | CATTTTGTGCTTGAGGTAGT+TGG | - | chr1_2:42362000-42362019 | Msa0071010:intron | 40.0% |
| CTAGAACAATTGGACCAGTT+TGG | - | chr1_2:42362102-42362121 | Msa0071010:CDS | 40.0% | |
| GATTCATCATTAGCTCCTGA+AGG | - | chr1_2:42362169-42362188 | Msa0071010:intron | 40.0% | |
| CAACTTCTTCAATGGACGAT+TGG | - | chr1_2:42362215-42362234 | Msa0071010:intron | 40.0% | |
| ! | AAGTCATGGAAGCACACAAA+AGG | + | chr1_2:42362295-42362314 | None:intergenic | 40.0% |
| AGCAAAATTAATGAGGTCGG+AGG | + | chr1_2:42362540-42362559 | None:intergenic | 40.0% | |
| AGTTAGAGTTGGGGGTTAAA+AGG | + | chr1_2:42362763-42362782 | None:intergenic | 40.0% | |
| ! | AAGTATCGTCGATGTGTCTT+AGG | + | chr1_2:42362799-42362818 | None:intergenic | 40.0% |
| ACTTGCTTTCAGAGCATAGA+TGG | - | chr1_2:42362995-42363014 | Msa0071010:intron | 40.0% | |
| GTTATTGCTGTAGCTTTCTC+AGG | - | chr1_2:42363058-42363077 | Msa0071010:intron | 40.0% | |
| ! | CAAAAGCACGGCAATAATGA+AGG | + | chr1_2:42363330-42363349 | None:intergenic | 40.0% |
| ! | GGAGAAAAAGTCACCTGTTT+TGG | - | chr1_2:42363513-42363532 | Msa0071010:CDS | 40.0% |
| ! | GCTTGGTTGGTTAAGAACAT+TGG | - | chr1_2:42363555-42363574 | Msa0071010:CDS | 40.0% |
| !!! | TTATTTTTTGTTGGGGAGGG+AGG | - | chr1_2:42363658-42363677 | Msa0071010:CDS | 40.0% |
| TCTTGTGCATCAAATTGCGA+TGG | + | chr1_2:42363798-42363817 | None:intergenic | 40.0% | |
| TCGCAATTTGATGCACAAGA+TGG | - | chr1_2:42363798-42363817 | Msa0071010:five_prime_UTR | 40.0% | |
| ! | AGCTGCATAGAATCCGATTT+TGG | - | chr1_2:42363850-42363869 | Msa0071010:five_prime_UTR | 40.0% |
| ! | GCTGCATAGAATCCGATTTT+GGG | - | chr1_2:42363851-42363870 | Msa0071010:five_prime_UTR | 40.0% |
| !! | ATAGAATCCGATTTTGGGAG+TGG | - | chr1_2:42363856-42363875 | Msa0071010:five_prime_UTR | 40.0% |
| !! | TAGAATCCGATTTTGGGAGT+GGG | - | chr1_2:42363857-42363876 | Msa0071010:five_prime_UTR | 40.0% |
| ! | GCATGGTTGGTTAATGGAAG+TGG | + | chr1_2:42358142-42358161 | None:intergenic | 45.0% |
| ATAGGGGAATTGAGCATGGT+TGG | + | chr1_2:42358155-42358174 | None:intergenic | 45.0% | |
| GAGTATAGGGGAATTGAGCA+TGG | + | chr1_2:42358159-42358178 | None:intergenic | 45.0% | |
| GGTCTTCCATAGCTACATGA+AGG | + | chr1_2:42358245-42358264 | None:intergenic | 45.0% | |
| ! | AAGGTGACGGTGAAAGTGAA+AGG | - | chr1_2:42358308-42358327 | Msa0071010:CDS | 45.0% |
| ! | AGGTGACGGTGAAAGTGAAA+GGG | - | chr1_2:42358309-42358328 | Msa0071010:CDS | 45.0% |
| AGTGAAAGGGATGGTGAAGT+TGG | - | chr1_2:42358322-42358341 | Msa0071010:CDS | 45.0% | |
| GGTGAAGTTGGAGGAAAAAG+TGG | - | chr1_2:42358334-42358353 | Msa0071010:CDS | 45.0% | |
| GAAGTTGGAGGAAAAAGTGG+TGG | - | chr1_2:42358337-42358356 | Msa0071010:CDS | 45.0% | |
| !! | GAGGAAAAAGTGGTGGATAG+TGG | - | chr1_2:42358344-42358363 | Msa0071010:CDS | 45.0% |
| ! | TTATTGGGTCTGGGATTGGT+GGG | - | chr1_2:42358405-42358424 | Msa0071010:intron | 45.0% |
| TTATACCTGGTGGGAGTTCT+GGG | - | chr1_2:42358489-42358508 | Msa0071010:intron | 45.0% | |
| !! | CTGGGTTTTATCATAGGGAG+GGG | - | chr1_2:42358507-42358526 | Msa0071010:intron | 45.0% |
| GCTTATGCATTAGTAGGCCT+GGG | + | chr1_2:42359071-42359090 | None:intergenic | 45.0% | |
| TGCTTATGCATTAGTAGGCC+TGG | + | chr1_2:42359072-42359091 | None:intergenic | 45.0% | |
| TCATGACCATGAGTTGCCTT+AGG | - | chr1_2:42359251-42359270 | Msa0071010:intron | 45.0% | |
| !! | ACACAAGCATTGGAAGCAGT+TGG | - | chr1_2:42359456-42359475 | Msa0071010:intron | 45.0% |
| AAATGAACGGTTGTCGGATC+AGG | + | chr1_2:42359501-42359520 | None:intergenic | 45.0% | |
| AGGCAAAACGCCTTATAAGG+GGG | + | chr1_2:42359674-42359693 | None:intergenic | 45.0% | |
| GAGGCAAAACGCCTTATAAG+GGG | + | chr1_2:42359675-42359694 | None:intergenic | 45.0% | |
| GGAGGCAAAACGCCTTATAA+GGG | + | chr1_2:42359676-42359695 | None:intergenic | 45.0% | |
| GTTGGAGCTAAAATCGCTTG+AGG | - | chr1_2:42359766-42359785 | Msa0071010:intron | 45.0% | |
| TGCAAAGAAGATATGCCAGG+TGG | + | chr1_2:42359941-42359960 | None:intergenic | 45.0% | |
| TTCATTGATAGGGACTAGGG+AGG | - | chr1_2:42359963-42359982 | Msa0071010:CDS | 45.0% | |
| !! | GGCGTTATCTTTTAGCTGTG+AGG | - | chr1_2:42359984-42360003 | Msa0071010:CDS | 45.0% |
| TGCTTCACTTCAGCAGCTAA+TGG | + | chr1_2:42360085-42360104 | None:intergenic | 45.0% | |
| GACCAAATTGACCGGATCAT+GGG | - | chr1_2:42360226-42360245 | Msa0071010:intron | 45.0% | |
| TTCCCATGATCCGGTCAATT+TGG | + | chr1_2:42360231-42360250 | None:intergenic | 45.0% | |
| GTTGTCTTTCATAGATGCCG+AGG | - | chr1_2:42360637-42360656 | Msa0071010:intron | 45.0% | |
| AAGCAAAAAGCTAGGTGAGC+AGG | + | chr1_2:42360919-42360938 | None:intergenic | 45.0% | |
| !! | AGATGATGCAGAAGCACCTT+TGG | - | chr1_2:42361256-42361275 | Msa0071010:CDS | 45.0% |
| AGAGAGAGCAAGAGAGAAAG+AGG | + | chr1_2:42361373-42361392 | None:intergenic | 45.0% | |
| GTTCTGTGTGACAGACACTT+TGG | - | chr1_2:42361427-42361446 | Msa0071010:intron | 45.0% | |
| TGTGTGACAGACACTTTGGT+GGG | - | chr1_2:42361431-42361450 | Msa0071010:intron | 45.0% | |
| GTGGGATTAACTACCCTCTT+GGG | - | chr1_2:42361449-42361468 | Msa0071010:intron | 45.0% | |
| TGGGATTAACTACCCTCTTG+GGG | - | chr1_2:42361450-42361469 | Msa0071010:intron | 45.0% | |
| GGCAAAAGGTCTAGTTGATC+AGG | - | chr1_2:42361498-42361517 | Msa0071010:intron | 45.0% | |
| ACGAGTATTATCACCGAGCA+GGG | - | chr1_2:42361550-42361569 | Msa0071010:intron | 45.0% | |
| ! | TACTTTTGCAGGTAGGAGTG+AGG | - | chr1_2:42361656-42361675 | Msa0071010:intron | 45.0% |
| CTAACCAAATGTGTCCCATC+TGG | + | chr1_2:42361731-42361750 | None:intergenic | 45.0% | |
| AGGAGAATCACTGCCAAAAG+AGG | - | chr1_2:42361879-42361898 | Msa0071010:intron | 45.0% | |
| TGGTGACAATCTGTATCTGG+TGG | + | chr1_2:42361982-42362001 | None:intergenic | 45.0% | |
| GAACAATTGGACCAGTTTGG+AGG | - | chr1_2:42362105-42362124 | Msa0071010:CDS | 45.0% | |
| ACCAGTTTGGAGGAACCATA+TGG | - | chr1_2:42362115-42362134 | Msa0071010:intron | 45.0% | |
| TCCATATGGTTCCTCCAAAC+TGG | + | chr1_2:42362119-42362138 | None:intergenic | 45.0% | |
| TGAAGGATATGACGACCTTC+AGG | + | chr1_2:42362187-42362206 | None:intergenic | 45.0% | |
| TTCTTCAATGGACGATTGGC+AGG | - | chr1_2:42362219-42362238 | Msa0071010:intron | 45.0% | |
| CGAATATGAGGCAAAGAAGC+AGG | - | chr1_2:42362425-42362444 | Msa0071010:intron | 45.0% | |
| ATATGAGGCAAAGAAGCAGG+TGG | - | chr1_2:42362428-42362447 | Msa0071010:intron | 45.0% | |
| ! | TCGATGGATGATCTAAGACC+TGG | + | chr1_2:42362495-42362514 | None:intergenic | 45.0% |
| GTTGGGGGTTAAAAGGTTCA+GGG | + | chr1_2:42362756-42362775 | None:intergenic | 45.0% | |
| AGTTGGGGGTTAAAAGGTTC+AGG | + | chr1_2:42362757-42362776 | None:intergenic | 45.0% | |
| TAACCCCCAACTCTAACTCT+AGG | - | chr1_2:42362765-42362784 | Msa0071010:intron | 45.0% | |
| CTACCTAGAGTTAGAGTTGG+GGG | + | chr1_2:42362771-42362790 | None:intergenic | 45.0% | |
| CCTACCTAGAGTTAGAGTTG+GGG | + | chr1_2:42362772-42362791 | None:intergenic | 45.0% | |
| CCCTACCTAGAGTTAGAGTT+GGG | + | chr1_2:42362773-42362792 | None:intergenic | 45.0% | |
| CCCAACTCTAACTCTAGGTA+GGG | - | chr1_2:42362770-42362789 | Msa0071010:intron | 45.0% | |
| TCCCTACCTAGAGTTAGAGT+TGG | + | chr1_2:42362774-42362793 | None:intergenic | 45.0% | |
| AGCATTCCAAAGGGGTTGTT+AGG | - | chr1_2:42362856-42362875 | Msa0071010:intron | 45.0% | |
| CAGCAATAACACCTTGTCCA+GGG | + | chr1_2:42363048-42363067 | None:intergenic | 45.0% | |
| ACAGCAATAACACCTTGTCC+AGG | + | chr1_2:42363049-42363068 | None:intergenic | 45.0% | |
| CATCGAGTAGCTGCAGATAT+TGG | - | chr1_2:42363094-42363113 | Msa0071010:intron | 45.0% | |
| GCAATAATGAAGGACGGTAC+AGG | + | chr1_2:42363320-42363339 | None:intergenic | 45.0% | |
| AGCACGGCAATAATGAAGGA+CGG | + | chr1_2:42363326-42363345 | None:intergenic | 45.0% | |
| ! | ATAGAACTAGGGCGTTCGAT+CGG | - | chr1_2:42363709-42363728 | Msa0071010:exon | 45.0% |
| !! | AGAATCCGATTTTGGGAGTG+GGG | - | chr1_2:42363858-42363877 | Msa0071010:five_prime_UTR | 45.0% |
| !! | AATAAAAATAAAAATGTAAA+CGG | - | chr1_2:42358001-42358020 | Msa0071010:three_prime_UTR | 5.0% |
| !!! | ACTTTTTATTATTAAAAAAT+AGG | - | chr1_2:42363487-42363506 | Msa0071010:CDS | 5.0% |
| !!! | CTTTTTATTATTAAAAAATA+GGG | - | chr1_2:42363488-42363507 | Msa0071010:CDS | 5.0% |
| ! | GATGGGGGTGTGGTTAGAAA+CGG | + | chr1_2:42358183-42358202 | None:intergenic | 50.0% |
| ! | GGTGTGATGGTAGATGATGG+GGG | + | chr1_2:42358198-42358217 | None:intergenic | 50.0% |
| GGGTGTGATGGTAGATGATG+GGG | + | chr1_2:42358199-42358218 | None:intergenic | 50.0% | |
| GGGGTGTGATGGTAGATGAT+GGG | + | chr1_2:42358200-42358219 | None:intergenic | 50.0% | |
| TGGGGTGTGATGGTAGATGA+TGG | + | chr1_2:42358201-42358220 | None:intergenic | 50.0% | |
| ACTTTGTAGGTGGGGTGTGA+TGG | + | chr1_2:42358211-42358230 | None:intergenic | 50.0% | |
| GACGGTGAAAGTGAAAGGGA+TGG | - | chr1_2:42358313-42358332 | Msa0071010:CDS | 50.0% | |
| GAAAGGGATGGTGAAGTTGG+AGG | - | chr1_2:42358325-42358344 | Msa0071010:CDS | 50.0% | |
| !! | TGGTGGATAGTGGGAAGAGA+GGG | - | chr1_2:42358354-42358373 | Msa0071010:intron | 50.0% |
| ! | GTTATTGGGTCTGGGATTGG+TGG | - | chr1_2:42358404-42358423 | Msa0071010:intron | 50.0% |
| GTTATACCTGGTGGGAGTTC+TGG | - | chr1_2:42358488-42358507 | Msa0071010:intron | 50.0% | |
| TAAAACCCAGAACTCCCACC+AGG | + | chr1_2:42358497-42358516 | None:intergenic | 50.0% | |
| GGAAGCAGTTGGTTGTCAGA+TGG | - | chr1_2:42359467-42359486 | Msa0071010:intron | 50.0% | |
| AGCAGTTGGTTGTCAGATGG+AGG | - | chr1_2:42359470-42359489 | Msa0071010:intron | 50.0% | |
| ACTCGAACAGAGAGGTGGTT+TGG | + | chr1_2:42359531-42359550 | None:intergenic | 50.0% | |
| ! | AGGATGCCGTCCTTTTCATG+GGG | + | chr1_2:42359600-42359619 | None:intergenic | 50.0% |
| ! | GAGGATGCCGTCCTTTTCAT+GGG | + | chr1_2:42359601-42359620 | None:intergenic | 50.0% |
| ! | TGAGGATGCCGTCCTTTTCA+TGG | + | chr1_2:42359602-42359621 | None:intergenic | 50.0% |
| CGGAGGCAAAACGCCTTATA+AGG | + | chr1_2:42359677-42359696 | None:intergenic | 50.0% | |
| ! | GAGGAGCCACTCTACCTTTT+TGG | - | chr1_2:42359785-42359804 | Msa0071010:intron | 50.0% |
| GGACCAAATTGACCGGATCA+TGG | - | chr1_2:42360225-42360244 | Msa0071010:intron | 50.0% | |
| ! | GCTATGGCTCCAGCATTTTG+AGG | + | chr1_2:42360590-42360609 | None:intergenic | 50.0% |
| AAAATGCTGGAGCCATAGCC+AGG | - | chr1_2:42360591-42360610 | Msa0071010:intron | 50.0% | |
| !! | TGGAGTCTGCAAAGCGTTGA+CGG | + | chr1_2:42360874-42360893 | None:intergenic | 50.0% |
| AGTGTCTGTCACACAGAACC+TGG | + | chr1_2:42361426-42361445 | None:intergenic | 50.0% | |
| CTGTGTGACAGACACTTTGG+TGG | - | chr1_2:42361430-42361449 | Msa0071010:intron | 50.0% | |
| GGTGGGATTAACTACCCTCT+TGG | - | chr1_2:42361448-42361467 | Msa0071010:intron | 50.0% | |
| GGGATTAACTACCCTCTTGG+GGG | - | chr1_2:42361451-42361470 | Msa0071010:intron | 50.0% | |
| TGGTGGGATTGCAAAGTCCT+TGG | - | chr1_2:42361477-42361496 | Msa0071010:intron | 50.0% | |
| CACGAGTATTATCACCGAGC+AGG | - | chr1_2:42361549-42361568 | Msa0071010:intron | 50.0% | |
| GTAGGAGTGAGGCTTTCAGA+TGG | - | chr1_2:42361667-42361686 | Msa0071010:intron | 50.0% | |
| GCTACCAGATGGGACACATT+TGG | - | chr1_2:42361724-42361743 | Msa0071010:intron | 50.0% | |
| ACACATGGGGGTTAAAGCAG+AGG | - | chr1_2:42361951-42361970 | Msa0071010:intron | 50.0% | |
| TCAATGGACGATTGGCAGGT+AGG | - | chr1_2:42362223-42362242 | Msa0071010:intron | 50.0% | |
| CCCCAACTCTAACTCTAGGT+AGG | - | chr1_2:42362769-42362788 | Msa0071010:intron | 50.0% | |
| TCCATAAGTACCCTCGTCAC+GGG | + | chr1_2:42362824-42362843 | None:intergenic | 50.0% | |
| GTCCATAAGTACCCTCGTCA+CGG | + | chr1_2:42362825-42362844 | None:intergenic | 50.0% | |
| ! | TTTGGAATGCTGCGTGGCAT+TGG | + | chr1_2:42362847-42362866 | None:intergenic | 50.0% |
| AATGCCACGCAGCATTCCAA+AGG | - | chr1_2:42362846-42362865 | Msa0071010:intron | 50.0% | |
| ATGCCACGCAGCATTCCAAA+GGG | - | chr1_2:42362847-42362866 | Msa0071010:intron | 50.0% | |
| GGCATTCCTAACAACCCCTT+TGG | + | chr1_2:42362865-42362884 | None:intergenic | 50.0% | |
| !! | TTTTGGACGGCATGCTGCTT+GGG | - | chr1_2:42363530-42363549 | Msa0071010:CDS | 50.0% |
| GCAGCTATAGAATCCCGCAT+TGG | + | chr1_2:42363836-42363855 | None:intergenic | 50.0% | |
| !! | GAATCCGATTTTGGGAGTGG+GGG | - | chr1_2:42363859-42363878 | Msa0071010:five_prime_UTR | 50.0% |
| !! | AATCCGATTTTGGGAGTGGG+GGG | - | chr1_2:42363860-42363879 | Msa0071010:five_prime_UTR | 50.0% |
| !! | GATGGTAGATGATGGGGGTG+TGG | + | chr1_2:42358193-42358212 | None:intergenic | 55.0% |
| !! | GTGGTGGATAGTGGGAAGAG+AGG | - | chr1_2:42358353-42358372 | Msa0071010:intron | 55.0% |
| !! | GGTGGATAGTGGGAAGAGAG+GGG | - | chr1_2:42358355-42358374 | Msa0071010:intron | 55.0% |
| !! | GGATTGGTGGGTTGGTTGCT+GGG | - | chr1_2:42358417-42358436 | Msa0071010:intron | 55.0% |
| GTTGGTTGCTGGGACTCAGT+TGG | - | chr1_2:42358427-42358446 | Msa0071010:intron | 55.0% | |
| GGGACTCAGTTGGCTGTGAA+AGG | - | chr1_2:42358437-42358456 | Msa0071010:intron | 55.0% | |
| TGTGCACTCGAACAGAGAGG+TGG | + | chr1_2:42359536-42359555 | None:intergenic | 55.0% | |
| CTCTGTGCACTCGAACAGAG+AGG | + | chr1_2:42359539-42359558 | None:intergenic | 55.0% | |
| GTGACTGCAGCCCCCTTATA+AGG | - | chr1_2:42359661-42359680 | Msa0071010:CDS | 55.0% | |
| TGACGACCCTCTACACACAC+AGG | - | chr1_2:42360471-42360490 | Msa0071010:intron | 55.0% | |
| GGTGTGCCTGTGTGTGTAGA+GGG | + | chr1_2:42360480-42360499 | None:intergenic | 55.0% | |
| AGGTGTGCCTGTGTGTGTAG+AGG | + | chr1_2:42360481-42360500 | None:intergenic | 55.0% | |
| ! | AACTACCCTCTTGGGGGTGT+TGG | - | chr1_2:42361457-42361476 | Msa0071010:intron | 55.0% |
| ACTTACGGCTTTGCCCTGCT+CGG | + | chr1_2:42361566-42361585 | None:intergenic | 55.0% | |
| AGGTAGGCAATACCGAGCAG+TGG | - | chr1_2:42362239-42362258 | Msa0071010:CDS | 55.0% | |
| ACGATACTTAGCCCGTGACG+AGG | - | chr1_2:42362810-42362829 | Msa0071010:intron | 55.0% | |
| CGATACTTAGCCCGTGACGA+GGG | - | chr1_2:42362811-42362830 | Msa0071010:intron | 55.0% | |
| TGCCACGCAGCATTCCAAAG+GGG | - | chr1_2:42362848-42362867 | Msa0071010:intron | 55.0% | |
| !! | AACCCCTTTGGAATGCTGCG+TGG | + | chr1_2:42362853-42362872 | None:intergenic | 55.0% |
| GTTGGAGACAGTTGCTTCCC+TGG | - | chr1_2:42363028-42363047 | Msa0071010:intron | 55.0% | |
| GACAGTTGCTTCCCTGGACA+AGG | - | chr1_2:42363034-42363053 | Msa0071010:intron | 55.0% | |
| AGCAGCATGCCGTCCAAAAC+AGG | + | chr1_2:42363529-42363548 | None:intergenic | 55.0% | |
| !! | GTTTTGGACGGCATGCTGCT+TGG | - | chr1_2:42363529-42363548 | Msa0071010:CDS | 55.0% |
| ! | TGCTGCTTGGGTTGCTTGGT+TGG | - | chr1_2:42363542-42363561 | Msa0071010:CDS | 55.0% |
| ! | TGGGTCTGGGATTGGTGGGT+TGG | - | chr1_2:42358409-42358428 | Msa0071010:intron | 60.0% |
| !! | GGGATTGGTGGGTTGGTTGC+TGG | - | chr1_2:42358416-42358435 | Msa0071010:intron | 60.0% |
| !! | TACCCTCTTGGGGGTGTTGG+TGG | - | chr1_2:42361460-42361479 | Msa0071010:intron | 60.0% |
| !! | ACCCTCTTGGGGGTGTTGGT+GGG | - | chr1_2:42361461-42361480 | Msa0071010:intron | 60.0% |
| TCCCACCAACACCCCCAAGA+GGG | + | chr1_2:42361465-42361484 | None:intergenic | 60.0% | |
| ATCCCACCAACACCCCCAAG+AGG | + | chr1_2:42361466-42361485 | None:intergenic | 60.0% | |
| !! | GCCCGTGACGAGGGTACTTA+TGG | - | chr1_2:42362820-42362839 | Msa0071010:intron | 60.0% |
| ! | GGCATGCTGCTTGGGTTGCT+TGG | - | chr1_2:42363538-42363557 | Msa0071010:CDS | 60.0% |
| TTGTTGGGGAGGGAGGAGAG+CGG | - | chr1_2:42363665-42363684 | Msa0071010:CDS | 60.0% | |
| GGCTTAGCTGCGTGCCAATG+CGG | - | chr1_2:42363819-42363838 | Msa0071010:five_prime_UTR | 60.0% | |
| GCTTAGCTGCGTGCCAATGC+GGG | - | chr1_2:42363820-42363839 | Msa0071010:five_prime_UTR | 60.0% | |
| CAGCCCCCCACTCCCAAAAT+CGG | + | chr1_2:42363866-42363885 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 42357852 | 42364024 | 42357852 | ID=Msa0071010;Name=Msa0071010 |
| chr1_2 | mRNA | 42357852 | 42364024 | 42357852 | ID=Msa0071010-mRNA-1;Parent=Msa0071010;Name=Msa0071010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=306|1|1|1|1|1|13|442|596 |
| chr1_2 | exon | 42357852 | 42358367 | 42357852 | ID=Msa0071010-mRNA-1:exon:12895;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42358761 | 42358869 | 42358761 | ID=Msa0071010-mRNA-1:exon:12894;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42358979 | 42359089 | 42358979 | ID=Msa0071010-mRNA-1:exon:12893;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42359352 | 42359465 | 42359352 | ID=Msa0071010-mRNA-1:exon:12892;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42359636 | 42359770 | 42359636 | ID=Msa0071010-mRNA-1:exon:12891;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42359862 | 42360010 | 42359862 | ID=Msa0071010-mRNA-1:exon:12890;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42360131 | 42360209 | 42360131 | ID=Msa0071010-mRNA-1:exon:12889;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42360297 | 42360449 | 42360297 | ID=Msa0071010-mRNA-1:exon:12888;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42360965 | 42361021 | 42360965 | ID=Msa0071010-mRNA-1:exon:12887;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42361218 | 42361300 | 42361218 | ID=Msa0071010-mRNA-1:exon:12886;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42362031 | 42362130 | 42362031 | ID=Msa0071010-mRNA-1:exon:12885;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42362232 | 42362438 | 42362232 | ID=Msa0071010-mRNA-1:exon:12884;Parent=Msa0071010-mRNA-1 |
| chr1_2 | exon | 42363299 | 42364024 | 42363299 | ID=Msa0071010-mRNA-1:exon:12883;Parent=Msa0071010-mRNA-1 |
| chr1_2 | five_prime_UTR | 42363719 | 42364024 | 42363719 | ID=Msa0071010-mRNA-1:five_prime_utr;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42363299 | 42363718 | 42363299 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42362232 | 42362438 | 42362232 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42362031 | 42362130 | 42362031 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42361218 | 42361300 | 42361218 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42360965 | 42361021 | 42360965 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42360297 | 42360449 | 42360297 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42360131 | 42360209 | 42360131 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42359862 | 42360010 | 42359862 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42359636 | 42359770 | 42359636 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42359352 | 42359465 | 42359352 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42358979 | 42359089 | 42358979 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42358761 | 42358869 | 42358761 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | CDS | 42358294 | 42358367 | 42358294 | ID=Msa0071010-mRNA-1:cds;Parent=Msa0071010-mRNA-1 |
| chr1_2 | three_prime_UTR | 42357852 | 42358293 | 42357852 | ID=Msa0071010-mRNA-1:three_prime_utr;Parent=Msa0071010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
