AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091340 MtrunA17_Chr1g0191841 83.881 335 32 8 1 321 1 327 0.0 513
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091340 AT5G27560.3 56.695 351 112 11 1 321 1 341 1.58e-117 342
Msa0091340 AT5G27560.4 56.695 351 112 11 1 321 1 341 1.58e-117 342
Msa0091340 AT5G27560.1 56.695 351 112 11 1 321 1 341 1.58e-117 342
Msa0091340 AT5G27560.2 56.069 346 112 11 1 316 1 336 2.13e-113 332

Find 92 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1_2:+73492195 None:intergenic
CTCAAACTTGGCGCGAAGTT+TGG 0.262372 1_2:+73494766 None:intergenic
TATGTTGCGCAGATGTTATT+TGG 0.303732 1_2:-73490841 Msa0091340:intron
AAATGGAGTGGGTGAGGGTG+AGG 0.313772 1_2:+73494844 None:intergenic
GAAAATTGAGGATGGGAAAA+TGG 0.319876 1_2:+73494827 None:intergenic
TGCCATTTGGTGCAGTATTT+CGG 0.343945 1_2:-73492594 Msa0091340:CDS
ATGTGATGATTCTTGATTGA+TGG 0.353162 1_2:-73490727 Msa0091340:exon
GAGGAGGATGAAGGAGGTTC+AGG 0.377619 1_2:+73494728 None:intergenic
ACCGCATCATTTGTATCTTC+AGG 0.381954 1_2:-73494532 Msa0091340:CDS
CGCCGACATCTTTGCTATAC+AGG 0.388277 1_2:+73493070 None:intergenic
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1_2:+73493855 None:intergenic
ATCCACGGCCCTTCTTCGTC+GGG 0.393040 1_2:-73494949 Msa0091340:five_prime_UTR
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1_2:+73494754 None:intergenic
AACAGACTTTGTCCTTGCTC+TGG 0.399492 1_2:+73490799 None:intergenic
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1_2:-73493842 Msa0091340:CDS
AGAGTATTGTTGAGTGGAAC+TGG 0.421047 1_2:+73494870 None:intergenic
AAGGCGCACAGTTGGAGCTC+TGG 0.422719 1_2:-73494369 Msa0091340:CDS
ATTCTTCCATTGGAAAATTG+AGG 0.430950 1_2:+73494815 None:intergenic
GCGTGGATTCCACATGATAA+GGG 0.432418 1_2:+73493092 None:intergenic
GGCGTGGATTCCACATGATA+AGG 0.432489 1_2:+73493091 None:intergenic
ATGGGAAAATGGAGTGGGTG+AGG 0.443249 1_2:+73494838 None:intergenic
TATCCACGGCCCTTCTTCGT+CGG 0.446482 1_2:-73494950 Msa0091340:five_prime_UTR
TATTCTAACATCTGATGATC+AGG 0.447172 1_2:+73493511 None:intergenic
TTCCACATGATAAGGGGCCT+TGG 0.447832 1_2:+73493099 None:intergenic
TGCAGTAATACAATCAAGTC+AGG 0.453229 1_2:-73494557 Msa0091340:CDS
GATATGTTCCGCTATATAGA+AGG 0.454960 1_2:-73490591 Msa0091340:three_prime_UTR
CACCGAAATACTGCACCAAA+TGG 0.466864 1_2:+73492592 None:intergenic
CATATGCGACCTATGCCATT+TGG 0.467305 1_2:-73492607 Msa0091340:CDS
GTTTCTAGTGAGGAGGATGA+AGG 0.480101 1_2:+73494719 None:intergenic
TAGCATACTTTAGAAATGAA+AGG 0.481792 1_2:-73490542 Msa0091340:three_prime_UTR
GGCGCGAAGTTTGGAGGTGG+AGG 0.483779 1_2:+73494775 None:intergenic
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1_2:+73494805 None:intergenic
TATTCAAGAAACTAAATGTC+AGG 0.484409 1_2:-73494317 Msa0091340:intron
TAATACATGCATCATAGTAT+AGG 0.485316 1_2:+73490621 None:intergenic
TCCATTGGAAAATTGAGGAT+GGG 0.490691 1_2:+73494820 None:intergenic
AAACTTGGCGCGAAGTTTGG+AGG 0.491870 1_2:+73494769 None:intergenic
CAGTTGTTTACCTCTAGACT+TGG 0.493413 1_2:-73494584 Msa0091340:CDS
GTAAAGAGAAAATGAGTTGT+CGG 0.494768 1_2:-73494913 Msa0091340:exon
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1_2:+73494789 None:intergenic
AATGGAGTGGGTGAGGGTGA+GGG 0.497870 1_2:+73494845 None:intergenic
TTCCATTGGAAAATTGAGGA+TGG 0.502142 1_2:+73494819 None:intergenic
CCACGGCCCTTCTTCGTCGG+GGG 0.512881 1_2:-73494947 Msa0091340:five_prime_UTR
TGGGAAAATGGAGTGGGTGA+GGG 0.519803 1_2:+73494839 None:intergenic
AGTATAGGATACAAGCTGTA+AGG 0.524513 1_2:+73490636 None:intergenic
AGACGATGAAGGCGCACAGT+TGG 0.532946 1_2:-73494377 Msa0091340:CDS
AGGCGCACAGTTGGAGCTCT+GGG 0.537017 1_2:-73494368 Msa0091340:CDS
GATATAATGTACGGCAGTTG+AGG 0.545601 1_2:-73493044 Msa0091340:CDS
AGCACCGGCATCTGGAAATA+CGG 0.545922 1_2:+73493863 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1_2:+73494790 None:intergenic
TGGAGCTCTGGGAATTGTCA+AGG 0.547143 1_2:-73494357 Msa0091340:CDS
CTCGAATTCTTAGACGATGA+AGG 0.553819 1_2:-73494388 Msa0091340:CDS
GATCGAAAGCTTGTAGATAG+TGG 0.557895 1_2:-73493559 Msa0091340:CDS
TATAGCAAAGATGTCGGCGT+TGG 0.564093 1_2:-73493066 Msa0091340:CDS
TCGGAGACTTACTGGATCAT+CGG 0.565049 1_2:+73493462 None:intergenic
CTTGGCGCGAAGTTTGGAGG+TGG 0.566902 1_2:+73494772 None:intergenic
ATCACATAGACTTCATGAAA+CGG 0.569010 1_2:+73490743 None:intergenic
AAGATAAAGACGAAACCGAC+AGG 0.570019 1_2:-73494685 Msa0091340:intron
TGTTTACCTCTAGACTTGGA+AGG 0.572447 1_2:-73494580 Msa0091340:CDS
TGTTCAGTGATGACAAGGAT+AGG 0.572733 1_2:-73492218 Msa0091340:CDS
AGGGAGAGAGTATTGTTGAG+TGG 0.578245 1_2:+73494864 None:intergenic
CACGGCCCTTCTTCGTCGGG+GGG 0.578613 1_2:-73494946 Msa0091340:five_prime_UTR
TCCACGGCCCTTCTTCGTCG+GGG 0.580662 1_2:-73494948 Msa0091340:five_prime_UTR
TAATGAATAATTATTATCCA+CGG 0.586409 1_2:-73494964 Msa0091340:five_prime_UTR
AAGGAGGTTCAGGTTCACCT+TGG 0.587647 1_2:+73494738 None:intergenic
GCCAAGTTTGAGAAATTCCA+AGG 0.588934 1_2:-73494755 Msa0091340:CDS
TGTAGATAGTGGTGATGAGA+TGG 0.592499 1_2:-73493548 Msa0091340:CDS
AGTCTGTTTGACAAAGCGGC+AGG 0.600065 1_2:-73490784 Msa0091340:CDS
GCATCATTTGTATCTTCAGG+AGG 0.601953 1_2:-73494529 Msa0091340:CDS
TGTAATGATAGTTTCTAGTG+AGG 0.608646 1_2:+73494709 None:intergenic
TTGAGGATGGGAAAATGGAG+TGG 0.610141 1_2:+73494832 None:intergenic
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1_2:-73493839 Msa0091340:CDS
CGTGGATTCCACATGATAAG+GGG 0.614438 1_2:+73493093 None:intergenic
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1_2:-73493867 Msa0091340:CDS
TGAGGATGGGAAAATGGAGT+GGG 0.615442 1_2:+73494833 None:intergenic
AATACTGCACCAAATGGCAT+AGG 0.619316 1_2:+73492598 None:intergenic
TCGGCGTTGGATATAATGTA+CGG 0.620355 1_2:-73493053 Msa0091340:CDS
TCTAGTGAGGAGGATGAAGG+AGG 0.622040 1_2:+73494722 None:intergenic
TCGTCTAAGAATTCGAGTTG+AGG 0.622785 1_2:+73494394 None:intergenic
ACTTGTGTCCTTCTATATAG+CGG 0.623101 1_2:+73490583 None:intergenic
ACATCTTTGCTATACAGGCG+TGG 0.625104 1_2:+73493075 None:intergenic
AATGATAGTTTCTAGTGAGG+AGG 0.628674 1_2:+73494712 None:intergenic
CGCCTGTATAGCAAAGATGT+CGG 0.631582 1_2:-73493072 Msa0091340:CDS
AGATAGTGGTGATGAGATGG+TGG 0.638397 1_2:-73493545 Msa0091340:CDS
TCCTGAAGATACAAATGATG+CGG 0.639331 1_2:+73494531 None:intergenic
ACAAAGTCTGTTTGACAAAG+CGG 0.639727 1_2:-73490788 Msa0091340:CDS
CATCATTTGTATCTTCAGGA+GGG 0.641311 1_2:-73494528 Msa0091340:CDS
GAAGAACAGAAACCAGAGCA+AGG 0.653627 1_2:-73490811 Msa0091340:CDS
ACTGCACCTTCCAAGTCTAG+AGG 0.662278 1_2:+73494574 None:intergenic
AGCCAAGGCCCCTTATCATG+TGG 0.662906 1_2:-73493101 Msa0091340:CDS
AAATGAAAGGAAACGTTCCG+TGG 0.678264 1_2:-73490529 Msa0091340:three_prime_UTR
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1_2:-73492223 Msa0091340:CDS
AAGGGTGAGATTTCATACCA+CGG 0.736827 1_2:+73490512 Msa0091330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAAATAATTAATT+AGG + chr1_2:73493604-73493623 None:intergenic 0.0%
!!! TTAATTTGTAATTCTTTAAA+GGG + chr1_2:73491436-73491455 None:intergenic 10.0%
!! TAAAAATATATAAATGACAA+GGG - chr1_2:73492202-73492221 Msa0091340:CDS 10.0%
!!! TACATTTTATTTTGAATAAT+TGG - chr1_2:73492776-73492795 Msa0091340:intron 10.0%
!! AATTTAAATAATTAATTAGG+TGG + chr1_2:73493601-73493620 None:intergenic 10.0%
!!! TTTTTTTCATGTATTTTTAA+TGG - chr1_2:73493996-73494015 Msa0091340:intron 10.0%
!!! TTTTTTCATGTATTTTTAAT+GGG - chr1_2:73493997-73494016 Msa0091340:intron 10.0%
!! TAATTTAAATAACTAATTAG+GGG - chr1_2:73494302-73494321 Msa0091340:intron 10.0%
!! TTCTCTAATATTAAACAATT+AGG - chr1_2:73491219-73491238 Msa0091340:intron 15.0%
!! TCTCTAATATTAAACAATTA+GGG - chr1_2:73491220-73491239 Msa0091340:intron 15.0%
!! TCATAAAAAGTTACTATTTA+AGG - chr1_2:73491367-73491386 Msa0091340:intron 15.0%
!!! GTTAATTTGTAATTCTTTAA+AGG + chr1_2:73491437-73491456 None:intergenic 15.0%
!! AGATAATTTGAATGATAATT+TGG - chr1_2:73491500-73491519 Msa0091340:intron 15.0%
!! CTAAAAATATATAAATGACA+AGG - chr1_2:73492201-73492220 Msa0091340:CDS 15.0%
!!! TATTACTTATAAAACCATTT+TGG - chr1_2:73493370-73493389 Msa0091340:intron 15.0%
!! ATTTCGAAAAACATTAAATT+GGG + chr1_2:73493476-73493495 None:intergenic 15.0%
!! AATTTCGAAAAACATTAAAT+TGG + chr1_2:73493477-73493496 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr1_2:73493719-73493738 Msa0091340:intron 15.0%
!! AGAAAATAAAGATAAAATGT+AGG - chr1_2:73493719-73493738 Msa0091340:intron 15.0%
!! AAAAATCCAATAAAAATACA+TGG - chr1_2:73493861-73493880 Msa0091340:CDS 15.0%
!!! AATTTTCCATGTATTTTTAT+TGG + chr1_2:73493870-73493889 None:intergenic 15.0%
!! AAAATTCCATTAAAAATACA+TGG - chr1_2:73493884-73493903 Msa0091340:intron 15.0%
!! AAAATTCCATTAAAAATACA+TGG + chr1_2:73493884-73493903 None:intergenic 15.0%
!! AGAAAATAAAGATAAAATGT+AGG + chr1_2:73493719-73493738 None:intergenic 15.0%
!!! AGTATTTTTTCTACATTTTA+AGG - chr1_2:73494114-73494133 Msa0091340:intron 15.0%
!! AGAAAATAAAGATAAAATGT+AGG + chr1_2:73493719-73493738 None:intergenic 15.0%
!!! AGTTTTTTTTCTGTATTTTA+AGG - chr1_2:73494214-73494233 Msa0091340:intron 15.0%
!!! AAAATTCTGAGTTTTAAAAT+AGG - chr1_2:73494383-73494402 Msa0091340:CDS 15.0%
!!! AAATTCTGAGTTTTAAAATA+GGG - chr1_2:73494384-73494403 Msa0091340:CDS 15.0%
!! TTAAAAAAAAGGAAGAATAA+TGG + chr1_2:73494561-73494580 None:intergenic 15.0%
!!! TGATGTTTCTATTAAAAAAA+AGG + chr1_2:73494572-73494591 None:intergenic 15.0%
!! AGTGAAAGAAAAAGATATAT+TGG + chr1_2:73491000-73491019 None:intergenic 20.0%
!! CTCTAATATTAAACAATTAG+GGG - chr1_2:73491221-73491240 Msa0091340:intron 20.0%
!!! TTATTACCCCTAATTTTAAT+TGG + chr1_2:73491479-73491498 None:intergenic 20.0%
!! CAATGCAAATTAAAATATAC+TGG + chr1_2:73491831-73491850 None:intergenic 20.0%
!!! CCAAAATATTTTAAGTCTTT+TGG + chr1_2:73492493-73492512 None:intergenic 20.0%
!!! CCAAAAGACTTAAAATATTT+TGG - chr1_2:73492490-73492509 Msa0091340:intron 20.0%
!!! TTTGTTATTTCTTCTCTTTT+CGG - chr1_2:73492621-73492640 Msa0091340:CDS 20.0%
!! ATATAATAATCCTTATGGTA+GGG + chr1_2:73492935-73492954 None:intergenic 20.0%
!! TATATAATAATCCTTATGGT+AGG + chr1_2:73492936-73492955 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG + chr1_2:73492940-73492959 None:intergenic 20.0%
!!! TTTTTCTTATGCTTGTTTTT+GGG + chr1_2:73493071-73493090 None:intergenic 20.0%
!!! ATTTTTCTTATGCTTGTTTT+TGG + chr1_2:73493072-73493091 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG + chr1_2:73493211-73493230 None:intergenic 20.0%
!!! ATTATTTCTTGTCTATTTTC+TGG - chr1_2:73493214-73493233 Msa0091340:intron 20.0%
!! TTTATAAGTAATATCTAGCA+AGG + chr1_2:73493363-73493382 None:intergenic 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG + chr1_2:73494444-73494463 None:intergenic 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG + chr1_2:73494443-73494462 None:intergenic 20.0%
!! TTTCGAAAAACATTAAATTG+GGG + chr1_2:73493475-73493494 None:intergenic 20.0%
!! TTCCGAAAAACATTAAATTT+GGG + chr1_2:73493547-73493566 None:intergenic 20.0%
!! ATTCCGAAAAACATTAAATT+TGG + chr1_2:73494355-73494374 None:intergenic 20.0%
!!! AGAATTTTTTCTGCATTTTA+AGG + chr1_2:73493689-73493708 None:intergenic 20.0%
!!! AGTATTTTTTCTGCATTTTA+AGG + chr1_2:73493798-73493817 None:intergenic 20.0%
!!! TTGGATTTTTTTGTTTATTC+TGG + chr1_2:73493851-73493870 None:intergenic 20.0%
!! ATAATTGATCATCCAAATAT+TGG + chr1_2:73493910-73493929 None:intergenic 20.0%
!! TATTTGGATGATCAATTATT+AGG - chr1_2:73493911-73493930 Msa0091340:intron 20.0%
!!! GTTTTTCCATGTATTTTTAA+TGG - chr1_2:73494040-73494059 Msa0091340:intron 20.0%
!!! GGAATTTTTTTTGTTTATTC+TGG - chr1_2:73494061-73494080 Msa0091340:intron 20.0%
!! AATTCCGAAAAACATTAAAT+TGG - chr1_2:73494354-73494373 Msa0091340:CDS 20.0%
!! ATTCCGAAAAACATTAAATT+GGG - chr1_2:73494355-73494374 Msa0091340:CDS 20.0%
!!! AATTCTGAGTTTTAAAATAG+GGG - chr1_2:73494385-73494404 Msa0091340:CDS 20.0%
!! AATTCCGTAAAACATTAAAT+TGG - chr1_2:73494414-73494433 Msa0091340:intron 20.0%
!! ATTCCGTAAAACATTAAATT+GGG - chr1_2:73494415-73494434 Msa0091340:intron 20.0%
!!! AAAATTCCGAGTTTTAAAAT+AGG - chr1_2:73494443-73494462 Msa0091340:intron 20.0%
!!! AAATTCCGAGTTTTAAAATA+GGG - chr1_2:73494444-73494463 Msa0091340:intron 20.0%
!! ATATATACATAGAAAATGGT+TGG + chr1_2:73494521-73494540 None:intergenic 20.0%
!! AAGGATATATACATAGAAAA+TGG + chr1_2:73494525-73494544 None:intergenic 20.0%
!! TATGTATATATCCTTATAGT+TGG - chr1_2:73494530-73494549 Msa0091340:CDS 20.0%
!! ATGTATATATCCTTATAGTT+GGG - chr1_2:73494531-73494550 Msa0091340:CDS 20.0%
! AAAGATATATTGGAAGTAGT+TGG + chr1_2:73490990-73491009 None:intergenic 25.0%
! TTAACAACCATCTTAATTAC+AGG - chr1_2:73491042-73491061 Msa0091340:intron 25.0%
! TATTCAAGAAACTAAATGTC+AGG - chr1_2:73491156-73491175 Msa0091340:intron 25.0%
! AATTAGGGGTAATTTAAAGA+AGG - chr1_2:73491235-73491254 Msa0091340:intron 25.0%
! ATTAGGGGTAATTTAAAGAA+GGG - chr1_2:73491236-73491255 Msa0091340:intron 25.0%
! TTCAGTTGCCAATTAAAATT+AGG - chr1_2:73491468-73491487 Msa0091340:intron 25.0%
! TCAGTTGCCAATTAAAATTA+GGG - chr1_2:73491469-73491488 Msa0091340:intron 25.0%
!! ACATAAAGCATTAATCAATG+TGG + chr1_2:73491696-73491715 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG + chr1_2:73491768-73491787 None:intergenic 25.0%
!!! TTTTAGCTCTATTCTTATGT+GGG + chr1_2:73492187-73492206 None:intergenic 25.0%
!!! TTTTTAGCTCTATTCTTATG+TGG + chr1_2:73492188-73492207 None:intergenic 25.0%
! TATTAAAACACAAGAATGCA+TGG + chr1_2:73492317-73492336 None:intergenic 25.0%
!!! TCTTTTGGAAATAAATAGCT+TGG + chr1_2:73492478-73492497 None:intergenic 25.0%
!! TGTATGATTGTCTGAAATTT+AGG + chr1_2:73492595-73492614 None:intergenic 25.0%
! AATGATATAAGTTAGTAGTC+TGG + chr1_2:73492817-73492836 None:intergenic 25.0%
! TATAATAATCCTTATGGTAG+GGG + chr1_2:73492934-73492953 None:intergenic 25.0%
!! AGCATAAGAAAAATCACTTT+TGG - chr1_2:73493078-73493097 Msa0091340:CDS 25.0%
!!! ATCACTTTTGGATTTAAAAG+TGG - chr1_2:73493090-73493109 Msa0091340:CDS 25.0%
! AAGTCAAAATCATTTACAGA+CGG + chr1_2:73493147-73493166 None:intergenic 25.0%
! TTTGCAAGCAAATATCTATT+TGG + chr1_2:73493281-73493300 None:intergenic 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG + chr1_2:73494445-73494464 None:intergenic 25.0%
! TTCGAAAAACATTAAATTGG+GGG + chr1_2:73493474-73493493 None:intergenic 25.0%
! AAATTCCGAGTCTTAAAATA+GGG + chr1_2:73493519-73493538 None:intergenic 25.0%
! AAAATTCCGAGTCTTAAAAT+AGG + chr1_2:73493520-73493539 None:intergenic 25.0%
! TCCGAAAAACATTAAATTTG+GGG + chr1_2:73493546-73493565 None:intergenic 25.0%
! TAATAAGATAATGTGGTAGA+GGG + chr1_2:73493577-73493596 None:intergenic 25.0%
! ATAATAAGATAATGTGGTAG+AGG + chr1_2:73493578-73493597 None:intergenic 25.0%
!!! TATTGGCCATGTATTTTTAA+TGG + chr1_2:73493893-73493912 None:intergenic 25.0%
! AAAAATACATGGCCAATATT+TGG - chr1_2:73493895-73493914 Msa0091340:intron 25.0%
! TATTATTGCACTCGTATATT+TGG - chr1_2:73493936-73493955 Msa0091340:intron 25.0%
! ATGATCATCCAAATATTTAC+AGG - chr1_2:73493962-73493981 Msa0091340:intron 25.0%
! ACATGGAAAAACAGTATAAA+CGG + chr1_2:73494032-73494051 None:intergenic 25.0%
! TTCCGAAAAACATTAAATTG+GGG - chr1_2:73494356-73494375 Msa0091340:CDS 25.0%
!!! ATTCTGAGTTTTAAAATAGG+GGG - chr1_2:73494386-73494405 Msa0091340:CDS 25.0%
! TTCCGTAAAACATTAAATTG+GGG - chr1_2:73494416-73494435 Msa0091340:intron 25.0%
!!! AATTCCGAGTTTTAAAATAG+GGG - chr1_2:73494445-73494464 Msa0091340:intron 25.0%
! TAATACATGCATCATAGTAT+AGG + chr1_2:73494855-73494874 None:intergenic 25.0%
!! TAGCATACTTTAGAAATGAA+AGG - chr1_2:73494931-73494950 Msa0091340:five_prime_UTR 25.0%
GTAAAGAGAAAATGAGTTGT+CGG - chr1_2:73490560-73490579 Msa0091340:three_prime_UTR 30.0%
ATTCTTCCATTGGAAAATTG+AGG + chr1_2:73490661-73490680 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG + chr1_2:73490767-73490786 None:intergenic 30.0%
GTAGTAATACTAATACCTGT+CGG + chr1_2:73490806-73490825 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG + chr1_2:73491028-73491047 None:intergenic 30.0%
GATGGTTGTTAAAAATTGAG+TGG + chr1_2:73491034-73491053 None:intergenic 30.0%
AGTTCAACCTGTAATTAAGA+TGG + chr1_2:73491052-73491071 None:intergenic 30.0%
AAACTAAATGTCAGGTTAGT+GGG - chr1_2:73491164-73491183 Msa0091340:intron 30.0%
AGTTTGTATGATCAATGCAT+TGG + chr1_2:73491346-73491365 None:intergenic 30.0%
CAGTTGCCAATTAAAATTAG+GGG - chr1_2:73491470-73491489 Msa0091340:intron 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG - chr1_2:73491661-73491680 Msa0091340:intron 30.0%
! TAAAGCATTAATCAATGTGG+TGG + chr1_2:73491693-73491712 None:intergenic 30.0%
CATTTCACTTGAGAATTTGA+TGG - chr1_2:73491785-73491804 Msa0091340:intron 30.0%
AACATGCACAGTTATTTGTT+TGG - chr1_2:73491875-73491894 Msa0091340:intron 30.0%
TATTCTAACATCTGATGATC+AGG + chr1_2:73491965-73491984 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG + chr1_2:73492128-73492147 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG - chr1_2:73492357-73492376 Msa0091340:intron 30.0%
!! AGTTGAGGCAATACTTTTTA+AGG - chr1_2:73492444-73492463 Msa0091340:intron 30.0%
!! TAGTTTTTCAACTGTTAACC+AGG - chr1_2:73492547-73492566 Msa0091340:intron 30.0%
CTAGCAATAGATAAATTCTG+AGG - chr1_2:73492691-73492710 Msa0091340:intron 30.0%
ATGCAGACTATCTGAAAATT+AGG + chr1_2:73492983-73493002 None:intergenic 30.0%
!!! ATTTTCTGGTTTTCAGATTG+TGG - chr1_2:73493228-73493247 Msa0091340:intron 30.0%
AAATTGCACTTAAGCCAAAA+TGG + chr1_2:73493387-73493406 None:intergenic 30.0%
ATTCCGATTCAGTCAAAATA+GGG + chr1_2:73494475-73494494 None:intergenic 30.0%
AATTCCGATTCAGTCAAAAT+AGG + chr1_2:73494474-73494493 None:intergenic 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG + chr1_2:73494446-73494465 None:intergenic 30.0%
TCGAAAAACATTAAATTGGG+GGG + chr1_2:73493473-73493492 None:intergenic 30.0%
AATTCCGAGTCTTAAAATAG+GGG + chr1_2:73493518-73493537 None:intergenic 30.0%
CGAAAAACATTAAATTTGGG+GGG + chr1_2:73493544-73493563 None:intergenic 30.0%
CCGAAAAACATTAAATTTGG+GGG + chr1_2:73493545-73493564 None:intergenic 30.0%
! CCCCCAAATTTAATGTTTTT+CGG - chr1_2:73493542-73493561 Msa0091340:CDS 30.0%
AATAAGATAATGTGGTAGAG+GGG + chr1_2:73493576-73493595 None:intergenic 30.0%
AGGTGGATAATAAGATAATG+TGG + chr1_2:73493584-73493603 None:intergenic 30.0%
GTAATGCACCTGTAAATATT+TGG + chr1_2:73493973-73493992 None:intergenic 30.0%
TAGGGGATAATAAGATAATG+TGG - chr1_2:73494319-73494338 Msa0091340:CDS 30.0%
ATAATAAGATAATGTGGTGG+AGG - chr1_2:73494325-73494344 Msa0091340:CDS 30.0%
! TAATAAGATAATGTGGTGGA+GGG - chr1_2:73494326-73494345 Msa0091340:CDS 30.0%
TCCGAAAAACATTAAATTGG+GGG - chr1_2:73494357-73494376 Msa0091340:CDS 30.0%
!!! TTCTGAGTTTTAAAATAGGG+GGG - chr1_2:73494387-73494406 Msa0091340:CDS 30.0%
TCCGTAAAACATTAAATTGG+GGG - chr1_2:73494417-73494436 Msa0091340:intron 30.0%
!!! ATTCCGAGTTTTAAAATAGG+GGG - chr1_2:73494446-73494465 Msa0091340:intron 30.0%
AATTCCGATTCAGTCAAAAT+AGG - chr1_2:73494474-73494493 Msa0091340:intron 30.0%
ATTCCGATTCAGTCAAAATA+GGG - chr1_2:73494475-73494494 Msa0091340:intron 30.0%
ATCACATAGACTTCATGAAA+CGG + chr1_2:73494733-73494752 None:intergenic 30.0%
ATGTGATGATTCTTGATTGA+TGG - chr1_2:73494746-73494765 Msa0091340:CDS 30.0%
GAAAATTGAGGATGGGAAAA+TGG + chr1_2:73490649-73490668 None:intergenic 35.0%
TCCATTGGAAAATTGAGGAT+GGG + chr1_2:73490656-73490675 None:intergenic 35.0%
TTCCATTGGAAAATTGAGGA+TGG + chr1_2:73490657-73490676 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG + chr1_2:73490722-73490741 None:intergenic 35.0%
!! AATGATAGTTTCTAGTGAGG+AGG + chr1_2:73490764-73490783 None:intergenic 35.0%
TGCAGTAATACAATCAAGTC+AGG - chr1_2:73490916-73490935 Msa0091340:intron 35.0%
TCCTGAAGATACAAATGATG+CGG + chr1_2:73490945-73490964 None:intergenic 35.0%
CATCATTTGTATCTTCAGGA+GGG - chr1_2:73490945-73490964 Msa0091340:intron 35.0%
GAAGTAGTTGGAACATACAA+TGG + chr1_2:73490978-73490997 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG - chr1_2:73491163-73491182 Msa0091340:intron 35.0%
AACTAAATGTCAGGTTAGTG+GGG - chr1_2:73491165-73491184 Msa0091340:intron 35.0%
GAAGAACCTCCAATTTGATT+GGG + chr1_2:73491202-73491221 None:intergenic 35.0%
AGAAGAACCTCCAATTTGAT+TGG + chr1_2:73491203-73491222 None:intergenic 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG - chr1_2:73491631-73491650 Msa0091340:intron 35.0%
TTACTCTGACAAAATAGCTG+CGG - chr1_2:73491729-73491748 Msa0091340:intron 35.0%
GTTAAAGATAGAACAGAGCT+CGG + chr1_2:73492033-73492052 None:intergenic 35.0%
GAGCTCTGTTCTATCTTTAA+CGG - chr1_2:73492032-73492051 Msa0091340:intron 35.0%
! TTAACGGAACCATTTTCTGT+TGG - chr1_2:73492048-73492067 Msa0091340:intron 35.0%
CAAGAATCTCCAACAGAAAA+TGG + chr1_2:73492060-73492079 None:intergenic 35.0%
! AATTCCATCAAGTTGTCACA+TGG + chr1_2:73492104-73492123 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG + chr1_2:73492976-73492995 None:intergenic 35.0%
CTATAATGCAGAGTTAACCA+TGG + chr1_2:73493006-73493025 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG + chr1_2:73493036-73493055 None:intergenic 35.0%
CAATATCTTCAGTATCAGGA+CGG + chr1_2:73493316-73493335 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG - chr1_2:73493316-73493335 Msa0091340:intron 35.0%
ACCTCAATATCTTCAGTATC+AGG + chr1_2:73493320-73493339 None:intergenic 35.0%
!! TAGCAAGGTATTGAAGATGA+AGG + chr1_2:73493348-73493367 None:intergenic 35.0%
TTCCGATTCAGTCAAAATAG+GGG + chr1_2:73494476-73494495 None:intergenic 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG + chr1_2:73494447-73494466 None:intergenic 35.0%
CGAAAAACATTAAATTGGGG+GGG + chr1_2:73494359-73494378 None:intergenic 35.0%
ATTCCGAGTCTTAAAATAGG+GGG + chr1_2:73493517-73493536 None:intergenic 35.0%
ATAAGATAATGTGGTAGAGG+GGG + chr1_2:73493575-73493594 None:intergenic 35.0%
GGGATAATAAGATAATGTGG+TGG - chr1_2:73494322-73494341 Msa0091340:CDS 35.0%
! AATAAGATAATGTGGTGGAG+GGG - chr1_2:73494327-73494346 Msa0091340:CDS 35.0%
! CCCCCCAATTTAATGTTTTT+CGG + chr1_2:73493470-73493489 None:intergenic 35.0%
CCGAAAAACATTAAATTGGG+GGG - chr1_2:73494358-73494377 Msa0091340:CDS 35.0%
CGAAAAACATTAAATTGGGG+GGG - chr1_2:73494359-73494378 Msa0091340:CDS 35.0%
!!! TCTGAGTTTTAAAATAGGGG+GGG - chr1_2:73494388-73494407 Msa0091340:CDS 35.0%
! CCCCCCAATTTAATGTTTTA+CGG + chr1_2:73494421-73494440 None:intergenic 35.0%
CCGTAAAACATTAAATTGGG+GGG - chr1_2:73494418-73494437 Msa0091340:intron 35.0%
CGTAAAACATTAAATTGGGG+GGG - chr1_2:73494419-73494438 Msa0091340:intron 35.0%
!!! TTCCGAGTTTTAAAATAGGG+GGG - chr1_2:73494447-73494466 Msa0091340:intron 35.0%
TTCCGATTCAGTCAAAATAG+GGG - chr1_2:73494476-73494495 Msa0091340:intron 35.0%
TAATGGCTATCCCAACTATA+AGG + chr1_2:73494544-73494563 None:intergenic 35.0%
!! AGCAAATTTGCTAGATCACT+TGG - chr1_2:73494594-73494613 Msa0091340:intron 35.0%
AAATAACATCTGCGCAACAT+AGG + chr1_2:73494633-73494652 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG - chr1_2:73494632-73494651 Msa0091340:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG - chr1_2:73494685-73494704 Msa0091340:intron 35.0%
AGTATAGGATACAAGCTGTA+AGG + chr1_2:73494840-73494859 None:intergenic 35.0%
GATATGTTCCGCTATATAGA+AGG - chr1_2:73494882-73494901 Msa0091340:CDS 35.0%
ACTTGTGTCCTTCTATATAG+CGG + chr1_2:73494893-73494912 None:intergenic 35.0%
!! AGAGTATTGTTGAGTGGAAC+TGG + chr1_2:73490606-73490625 None:intergenic 40.0%
! TCCCATCCTCAATTTTCCAA+TGG - chr1_2:73490652-73490671 Msa0091340:three_prime_UTR 40.0%
GCCAAGTTTGAGAAATTCCA+AGG - chr1_2:73490718-73490737 Msa0091340:three_prime_UTR 40.0%
AAGATAAAGACGAAACCGAC+AGG - chr1_2:73490788-73490807 Msa0091340:CDS 40.0%
CAGTTGTTTACCTCTAGACT+TGG - chr1_2:73490889-73490908 Msa0091340:intron 40.0%
TGTTTACCTCTAGACTTGGA+AGG - chr1_2:73490893-73490912 Msa0091340:intron 40.0%
ACCGCATCATTTGTATCTTC+AGG - chr1_2:73490941-73490960 Msa0091340:intron 40.0%
GCATCATTTGTATCTTCAGG+AGG - chr1_2:73490944-73490963 Msa0091340:intron 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG + chr1_2:73491082-73491101 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG - chr1_2:73491085-73491104 Msa0091340:intron 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG - chr1_2:73491126-73491145 Msa0091340:intron 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG - chr1_2:73491634-73491653 Msa0091340:intron 40.0%
AAGCTTTCGATCACTTAAGC+TGG + chr1_2:73491906-73491925 None:intergenic 40.0%
GATCGAAAGCTTGTAGATAG+TGG - chr1_2:73491914-73491933 Msa0091340:intron 40.0%
! TGTAGATAGTGGTGATGAGA+TGG - chr1_2:73491925-73491944 Msa0091340:intron 40.0%
! TCGGCGTTGGATATAATGTA+CGG - chr1_2:73492420-73492439 Msa0091340:intron 40.0%
GATATAATGTACGGCAGTTG+AGG - chr1_2:73492429-73492448 Msa0091340:intron 40.0%
! TCAAGTTGCAAATGCACGTT+TGG - chr1_2:73492515-73492534 Msa0091340:intron 40.0%
CAAGTTGCAAATGCACGTTT+GGG - chr1_2:73492516-73492535 Msa0091340:intron 40.0%
ACTGTTAACCAGGTGCATAA+TGG - chr1_2:73492557-73492576 Msa0091340:intron 40.0%
GAATGATACCATTATGCACC+TGG + chr1_2:73492568-73492587 None:intergenic 40.0%
AATACTGCACCAAATGGCAT+AGG + chr1_2:73492878-73492897 None:intergenic 40.0%
!! TGCCATTTGGTGCAGTATTT+CGG - chr1_2:73492879-73492898 Msa0091340:intron 40.0%
ATAATCCTTATGGTAGGGGA+GGG + chr1_2:73492930-73492949 None:intergenic 40.0%
AATAATCCTTATGGTAGGGG+AGG + chr1_2:73492931-73492950 None:intergenic 40.0%
TTTCAGATAGTCTGCATCCA+TGG - chr1_2:73492986-73493005 Msa0091340:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG - chr1_2:73493016-73493035 Msa0091340:intron 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG + chr1_2:73493061-73493080 None:intergenic 40.0%
!!! TGCTTGTTTTTGGGTGATCT+AGG + chr1_2:73493062-73493081 None:intergenic 40.0%
CCAACTATGTGCGAATTTCA+CGG + chr1_2:73493123-73493142 None:intergenic 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG - chr1_2:73493250-73493269 Msa0091340:intron 40.0%
TGTTCAGTGATGACAAGGAT+AGG - chr1_2:73493255-73493274 Msa0091340:intron 40.0%
TCCGATTCAGTCAAAATAGG+GGG + chr1_2:73494477-73494496 None:intergenic 40.0%
!!! ACCCCCCCTATTTTAAAACT+CGG - chr1_2:73493439-73493458 Msa0091340:intron 40.0%
!!! TCCGAGTTTTAAAATAGGGG+GGG + chr1_2:73494448-73494467 None:intergenic 40.0%
TTCCGAGTCTTAAAATAGGG+GGG + chr1_2:73493516-73493535 None:intergenic 40.0%
! ATAAGATAATGTGGTGGAGG+GGG - chr1_2:73494328-73494347 Msa0091340:CDS 40.0%
!!! TCCGAGTTTTAAAATAGGGG+GGG - chr1_2:73494448-73494467 Msa0091340:intron 40.0%
!!! ACCCCCCCTATTTTAAAACT+CGG + chr1_2:73493439-73493458 None:intergenic 40.0%
TCCGATTCAGTCAAAATAGG+GGG - chr1_2:73494477-73494496 Msa0091340:intron 40.0%
AAATGAAAGGAAACGTTCCG+TGG - chr1_2:73494944-73494963 Msa0091340:five_prime_UTR 40.0%
AAGGGTGAGATTTCATACCA+CGG + chr1_2:73494964-73494983 None:intergenic 40.0%
!! AGGGAGAGAGTATTGTTGAG+TGG + chr1_2:73490612-73490631 None:intergenic 45.0%
TGAGGATGGGAAAATGGAGT+GGG + chr1_2:73490643-73490662 None:intergenic 45.0%
TTGAGGATGGGAAAATGGAG+TGG + chr1_2:73490644-73490663 None:intergenic 45.0%
GCGAAGGGAAATTCTTCCAT+TGG + chr1_2:73490671-73490690 None:intergenic 45.0%
!! GTTTCTAGTGAGGAGGATGA+AGG + chr1_2:73490757-73490776 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG - chr1_2:73491190-73491209 Msa0091340:intron 45.0%
CGTCATCCCAATCAAATTGG+AGG - chr1_2:73491193-73491212 Msa0091340:intron 45.0%
!! AGTAAGCTTAAAGAGTGCCC+CGG + chr1_2:73491280-73491299 None:intergenic 45.0%
AAATGTTAACTAGTGCCCCC+GGG + chr1_2:73491413-73491432 None:intergenic 45.0%
GAAATGTTAACTAGTGCCCC+CGG + chr1_2:73491414-73491433 None:intergenic 45.0%
AAAGCCGTATTTCCAGATGC+CGG - chr1_2:73491606-73491625 Msa0091340:intron 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG + chr1_2:73491628-73491647 None:intergenic 45.0%
TGGACAGAATTGCATCAGCA+TGG + chr1_2:73491811-73491830 None:intergenic 45.0%
! AGATAGTGGTGATGAGATGG+TGG - chr1_2:73491928-73491947 Msa0091340:intron 45.0%
TCGGAGACTTACTGGATCAT+CGG + chr1_2:73492014-73492033 None:intergenic 45.0%
ACAGCCATGTGACAACTTGA+TGG - chr1_2:73492097-73492116 Msa0091340:intron 45.0%
CGTGGATTCCACATGATAAG+GGG + chr1_2:73492383-73492402 None:intergenic 45.0%
GCGTGGATTCCACATGATAA+GGG + chr1_2:73492384-73492403 None:intergenic 45.0%
! ACATCTTTGCTATACAGGCG+TGG + chr1_2:73492401-73492420 None:intergenic 45.0%
CGCCTGTATAGCAAAGATGT+CGG - chr1_2:73492401-73492420 Msa0091340:intron 45.0%
TATAGCAAAGATGTCGGCGT+TGG - chr1_2:73492407-73492426 Msa0091340:intron 45.0%
TTGCAAATGCACGTTTGGGT+AGG - chr1_2:73492520-73492539 Msa0091340:intron 45.0%
CATATGCGACCTATGCCATT+TGG - chr1_2:73492866-73492885 Msa0091340:intron 45.0%
CACCGAAATACTGCACCAAA+TGG + chr1_2:73492884-73492903 None:intergenic 45.0%
!! TTTCGGTGTTATCCCGAGTA+AGG - chr1_2:73492896-73492915 Msa0091340:intron 45.0%
TAATCCTTATGGTAGGGGAG+GGG + chr1_2:73492929-73492948 None:intergenic 45.0%
CCGTGAAATTCGCACATAGT+TGG - chr1_2:73493120-73493139 Msa0091340:intron 45.0%
ATCTTCAGTATCAGGACGGT+TGG + chr1_2:73493312-73493331 None:intergenic 45.0%
CGATTCAGTCAAAATAGGGG+GGG + chr1_2:73494479-73494498 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG + chr1_2:73494478-73494497 None:intergenic 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG - chr1_2:73493410-73493429 Msa0091340:intron 45.0%
TCCGAGTCTTAAAATAGGGG+GGG + chr1_2:73493515-73493534 None:intergenic 45.0%
!!! CCCCCCTATTTTGACTGAAT+CGG + chr1_2:73493410-73493429 None:intergenic 45.0%
CCGATTCAGTCAAAATAGGG+GGG - chr1_2:73494478-73494497 Msa0091340:intron 45.0%
CGATTCAGTCAAAATAGGGG+GGG - chr1_2:73494479-73494498 Msa0091340:intron 45.0%
GAAGAACAGAAACCAGAGCA+AGG - chr1_2:73494662-73494681 Msa0091340:intron 45.0%
AACAGACTTTGTCCTTGCTC+TGG + chr1_2:73494677-73494696 None:intergenic 45.0%
!!! TTTAATTTAAATAACTAATT+AGG - chr1_2:73494300-73494319 Msa0091340:intron 5.0%
!! TTAATTTAAATAACTAATTA+GGG - chr1_2:73494301-73494320 Msa0091340:intron 5.0%
TGGGAAAATGGAGTGGGTGA+GGG + chr1_2:73490637-73490656 None:intergenic 50.0%
ATGGGAAAATGGAGTGGGTG+AGG + chr1_2:73490638-73490657 None:intergenic 50.0%
AAACTTGGCGCGAAGTTTGG+AGG + chr1_2:73490707-73490726 None:intergenic 50.0%
CTCAAACTTGGCGCGAAGTT+TGG + chr1_2:73490710-73490729 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG + chr1_2:73490738-73490757 None:intergenic 50.0%
TCTAGTGAGGAGGATGAAGG+AGG + chr1_2:73490754-73490773 None:intergenic 50.0%
ACTGCACCTTCCAAGTCTAG+AGG + chr1_2:73490902-73490921 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG - chr1_2:73491116-73491135 Msa0091340:intron 50.0%
!! GTTTTGTTAACGAGTGCCCC+CGG - chr1_2:73491258-73491277 Msa0091340:intron 50.0%
! TTTTGTTAACGAGTGCCCCC+GGG - chr1_2:73491259-73491278 Msa0091340:intron 50.0%
!! TAAGCTTAAAGAGTGCCCCG+GGG + chr1_2:73491278-73491297 None:intergenic 50.0%
!! GTAAGCTTAAAGAGTGCCCC+GGG + chr1_2:73491279-73491298 None:intergenic 50.0%
AATGTTAACTAGTGCCCCCG+GGG + chr1_2:73491412-73491431 None:intergenic 50.0%
!! AGCACCGGCATCTGGAAATA+CGG + chr1_2:73491613-73491632 None:intergenic 50.0%
AACAGAGCTCGGAGACTTAC+TGG + chr1_2:73492022-73492041 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG + chr1_2:73492377-73492396 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG + chr1_2:73492385-73492404 None:intergenic 50.0%
! CGCCGACATCTTTGCTATAC+AGG + chr1_2:73492406-73492425 None:intergenic 50.0%
AGGGGAAAAAGGCCTTACTC+GGG + chr1_2:73492911-73492930 None:intergenic 50.0%
GAGGGGAAAAAGGCCTTACT+CGG + chr1_2:73492912-73492931 None:intergenic 50.0%
TATGGTAGGGGAGGGGAAAA+AGG + chr1_2:73492922-73492941 None:intergenic 50.0%
! TTTTCCCCTCCCCTACCATA+AGG - chr1_2:73492922-73492941 Msa0091340:intron 50.0%
AGTCTTAAAATAGGGGGGGG+GGG + chr1_2:73493511-73493530 None:intergenic 50.0%
GAGTCTTAAAATAGGGGGGG+GGG + chr1_2:73493512-73493531 None:intergenic 50.0%
CGAGTCTTAAAATAGGGGGG+GGG + chr1_2:73493513-73493532 None:intergenic 50.0%
CCGAGTCTTAAAATAGGGGG+GGG + chr1_2:73493514-73493533 None:intergenic 50.0%
!!! CCCCCCCCTATTTTAAGACT+CGG - chr1_2:73493511-73493530 Msa0091340:CDS 50.0%
AGTCTGTTTGACAAAGCGGC+AGG - chr1_2:73494689-73494708 Msa0091340:CDS 50.0%
TATCCACGGCCCTTCTTCGT+CGG - chr1_2:73490523-73490542 Msa0091340:three_prime_UTR 55.0%
TCTTACCCCCCGACGAAGAA+GGG + chr1_2:73490535-73490554 None:intergenic 55.0%
TTCTTACCCCCCGACGAAGA+AGG + chr1_2:73490536-73490555 None:intergenic 55.0%
AATGGAGTGGGTGAGGGTGA+GGG + chr1_2:73490631-73490650 None:intergenic 55.0%
AAATGGAGTGGGTGAGGGTG+AGG + chr1_2:73490632-73490651 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG + chr1_2:73490686-73490705 None:intergenic 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG + chr1_2:73490687-73490706 None:intergenic 55.0%
GAGGAGGATGAAGGAGGTTC+AGG + chr1_2:73490748-73490767 None:intergenic 55.0%
! AGACGATGAAGGCGCACAGT+TGG - chr1_2:73491096-73491115 Msa0091340:intron 55.0%
TTTGTTAACGAGTGCCCCCG+GGG - chr1_2:73491260-73491279 Msa0091340:intron 55.0%
!! AAGCTTAAAGAGTGCCCCGG+GGG + chr1_2:73491277-73491296 None:intergenic 55.0%
AGCCAAGGCCCCTTATCATG+TGG - chr1_2:73492372-73492391 Msa0091340:intron 55.0%
TCTTAAAATAGGGGGGGGGG+GGG + chr1_2:73493509-73493528 None:intergenic 55.0%
GTCTTAAAATAGGGGGGGGG+GGG + chr1_2:73493510-73493529 None:intergenic 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG - chr1_2:73494703-73494722 Msa0091340:CDS 55.0%
ATCCACGGCCCTTCTTCGTC+GGG - chr1_2:73490524-73490543 Msa0091340:three_prime_UTR 60.0%
CTTGGCGCGAAGTTTGGAGG+TGG + chr1_2:73490704-73490723 None:intergenic 60.0%
AAGGCGCACAGTTGGAGCTC+TGG - chr1_2:73491104-73491123 Msa0091340:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG - chr1_2:73491105-73491124 Msa0091340:intron 60.0%
TTAAAATAGGGGGGGGGGGG+GGG + chr1_2:73493507-73493526 None:intergenic 60.0%
CTTAAAATAGGGGGGGGGGG+GGG + chr1_2:73493508-73493527 None:intergenic 60.0%
TCCACGGCCCTTCTTCGTCG+GGG - chr1_2:73490525-73490544 Msa0091340:three_prime_UTR 65.0%
GGCGCGAAGTTTGGAGGTGG+AGG + chr1_2:73490701-73490720 None:intergenic 65.0%
CTTAACCAGTGCCCGTGCCC+CGG - chr1_2:73491392-73491411 Msa0091340:intron 65.0%
TTAACCAGTGCCCGTGCCCC+GGG - chr1_2:73491393-73491412 Msa0091340:intron 65.0%
TAACTAGTGCCCCCGGGGCA+CGG + chr1_2:73491407-73491426 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG + chr1_2:73491621-73491640 None:intergenic 65.0%
TAAAATAGGGGGGGGGGGGG+GGG + chr1_2:73493506-73493525 None:intergenic 65.0%
CCACGGCCCTTCTTCGTCGG+GGG - chr1_2:73490526-73490545 Msa0091340:three_prime_UTR 70.0%
CACGGCCCTTCTTCGTCGGG+GGG - chr1_2:73490527-73490546 Msa0091340:three_prime_UTR 70.0%
!! CGGGGCACGGGCACTGGTTA+AGG + chr1_2:73491394-73491413 None:intergenic 70.0%
TAACCAGTGCCCGTGCCCCG+GGG - chr1_2:73491394-73491413 Msa0091340:intron 70.0%
AACTAGTGCCCCCGGGGCAC+GGG + chr1_2:73491406-73491425 None:intergenic 70.0%
AAAATAGGGGGGGGGGGGGG+GGG + chr1_2:73493505-73493524 None:intergenic 70.0%
CCCCCGACGAAGAAGGGCCG+TGG + chr1_2:73490529-73490548 None:intergenic 75.0%
AACCAGTGCCCGTGCCCCGG+GGG - chr1_2:73491395-73491414 Msa0091340:intron 75.0%
AAATAGGGGGGGGGGGGGGG+GGG + chr1_2:73493504-73493523 None:intergenic 75.0%
! AATAGGGGGGGGGGGGGGGG+GGG + chr1_2:73493503-73493522 None:intergenic 80.0%
! TGCCCCCGGGGCACGGGCAC+TGG + chr1_2:73491400-73491419 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73490510 73494985 73490510 ID=Msa0091340;Name=Msa0091340
chr1_2 mRNA 73490510 73494985 73490510 ID=Msa0091340-mRNA-1;Parent=Msa0091340;Name=Msa0091340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=61|0.75|0.77|1|0.75|0.77|9|234|321
chr1_2 exon 73490510 73490851 73490510 ID=Msa0091340-mRNA-1:exon:25823;Parent=Msa0091340-mRNA-1
chr1_2 exon 73492181 73492251 73492181 ID=Msa0091340-mRNA-1:exon:25822;Parent=Msa0091340-mRNA-1
chr1_2 exon 73492593 73492648 73492593 ID=Msa0091340-mRNA-1:exon:25821;Parent=Msa0091340-mRNA-1
chr1_2 exon 73493030 73493121 73493030 ID=Msa0091340-mRNA-1:exon:25820;Parent=Msa0091340-mRNA-1
chr1_2 exon 73493474 73493588 73493474 ID=Msa0091340-mRNA-1:exon:25819;Parent=Msa0091340-mRNA-1
chr1_2 exon 73493813 73493895 73493813 ID=Msa0091340-mRNA-1:exon:25818;Parent=Msa0091340-mRNA-1
chr1_2 exon 73494318 73494431 73494318 ID=Msa0091340-mRNA-1:exon:25817;Parent=Msa0091340-mRNA-1
chr1_2 exon 73494516 73494603 73494516 ID=Msa0091340-mRNA-1:exon:25816;Parent=Msa0091340-mRNA-1
chr1_2 exon 73494686 73494985 73494686 ID=Msa0091340-mRNA-1:exon:25815;Parent=Msa0091340-mRNA-1
chr1_2 five_prime_UTR 73494925 73494985 73494925 ID=Msa0091340-mRNA-1:five_prime_utr;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73494686 73494924 73494686 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73494516 73494603 73494516 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73494318 73494431 73494318 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73493813 73493895 73493813 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73493474 73493588 73493474 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73493030 73493121 73493030 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73492593 73492648 73492593 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73492181 73492251 73492181 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 CDS 73490744 73490851 73490744 ID=Msa0091340-mRNA-1:cds;Parent=Msa0091340-mRNA-1
chr1_2 three_prime_UTR 73490510 73490743 73490510 ID=Msa0091340-mRNA-1:three_prime_utr;Parent=Msa0091340-mRNA-1
Gene Sequence

>Msa0091340

ATGAGTTGTCGGAGCTTAACTTGCTGCAACATCCAGTTCCACTCAACAATACTCTCTCCCTCACCCTCACCCACTCCATTTTCCCATCCTCAATTTTCCAATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCAAACTTCGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCCTCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGTTGTTTACCTCTAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTTGTATCTTCAGGAGGGATGAGAGCCATTGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGCTTAAGTGATCGAAAGCTTGTAGATAGTGGTGATGAGATGGTGGTTATGATTGTTCCTGATCATCAGATGTTAGAATATGTAGAGAAAATTGCATCTACTCTCTCCGATGATCCACCAAGGCCCCTTATCATGTGGAATCCACGCCTGTATAGCAAAGATGTCGGCGTTGGATATAATGTACGGCAGTTGAGGCAATACTTTTTAAGCACTTTTACAACTGTCTATCATATGCGACCTATGCCATTTGGTGCAGTATTTCGGTATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>Msa0091340

MSCRSLTCCNIQFHSTILSPSPSPTPFSHPQFSNGRISLRSSTSTSKLRAKFEKFQGEPEPPSSSSLETIITQDKDETDSCLPLDLEGAVIQSSQATASFVSSGGMRAIVELLIPQLEFLDDEGAQLELWELSRLFLDTLIQETKCQKVKAVFPDAGAAALLKYRWKDALFSFASLSDRKLVDSGDEMVVMIVPDHQMLEYVEKIASTLSDDPPRPLIMWNPRLYSKDVGVGYNVRQLRQYFLSTFTTVYHMRPMPFGAVFRYCGKCSVMTRIGQIDICLQKNMPTMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM*