AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0063850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063850 MtrunA17_Chr4g0018641 95.870 678 28 0 1 678 1 678 0.0 1327
Msa0063850 MtrunA17_Chr8g0372991 33.103 290 177 8 404 680 84 369 5.73e-39 148
Msa0063850 MtrunA17_Chr5g0423381 29.641 334 205 10 362 675 16 339 5.39e-33 130
Msa0063850 MtrunA17_Chr1g0188361 30.820 305 177 10 398 673 88 387 1.65e-24 106
Msa0063850 MtrunA17_Chr1g0195451 30.928 194 120 4 38 218 119 311 1.10e-17 86.3
Msa0063850 MtrunA17_Chr3g0138841 25.634 355 164 11 38 358 97 385 2.03e-16 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0063850 AT4G25290.1 53.676 680 304 5 3 679 2 673 0.0 758
Msa0063850 AT4G36530.1 32.753 287 168 8 404 673 27 305 2.00e-35 137
Msa0063850 AT4G36530.2 32.753 287 168 8 404 673 84 362 7.06e-35 137
Msa0063850 AT5G19850.1 32.414 290 175 8 401 675 75 358 4.06e-32 128
Msa0063850 AT5G38520.1 28.664 307 185 11 399 678 62 361 1.16e-22 100
Msa0063850 AT5G38520.2 27.900 319 184 11 399 678 62 373 1.92e-21 97.4
Msa0063850 AT5G13800.3 26.994 326 180 11 411 686 127 444 4.13e-20 94.7
Msa0063850 AT5G13800.2 26.911 327 179 12 411 686 104 421 4.18e-20 94.7
Msa0063850 AT5G13800.1 26.911 327 179 12 411 686 104 421 4.18e-20 94.7
Msa0063850 AT5G24850.1 25.568 352 169 11 29 358 79 359 4.64e-16 82.4
Msa0063850 AT5G13800.4 26.733 303 167 10 411 663 104 401 6.01e-16 80.9
Msa0063850 AT2G47590.1 28.866 194 116 5 42 218 120 308 1.07e-15 80.5

Find 194 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCATTTATTGCACTATT+TGG 0.145894 1_2:+24587111 Msa0063850:CDS
TGATGATATGATGGGATTTA+TGG 0.148142 1_2:+24586356 Msa0063850:CDS
CTTTACAGTTTGTTGATAAA+TGG 0.192600 1_2:+24589696 Msa0063850:three_prime_UTR
GGCTGCATATTTGAGGTATT+TGG 0.200869 1_2:+24586593 Msa0063850:CDS
AGCTCAGTATATACAATATT+TGG 0.206734 1_2:-24587939 None:intergenic
ATTTGGTCCTGCGCTGTCTT+TGG 0.222263 1_2:+24587128 Msa0063850:CDS
GTTTGGGCTATTACATTGTT+AGG 0.229050 1_2:+24587897 Msa0063850:CDS
CGGTGATCGAATACATAAAT+TGG 0.258554 1_2:-24584653 None:intergenic
GTTCTTCTTGTACATGGTTT+TGG 0.264043 1_2:+24587816 Msa0063850:CDS
TGGAACTAGGGATTGAAAAT+TGG 0.264946 1_2:-24584633 None:intergenic
TGGCTAGTGGTACTGGCTTT+TGG 0.265022 1_2:+24587435 Msa0063850:intron
TTGTGATGGTGTTATAATTA+AGG 0.274721 1_2:+24589365 Msa0063850:CDS
TCTGTGTTTGTTACACAAAA+AGG 0.298646 1_2:+24586528 Msa0063850:CDS
GCGGGAAAGTGAGGGAAAAT+TGG 0.306215 1_2:-24584489 None:intergenic
CTAGAGCTGGAAATCGAGTT+TGG 0.313646 1_2:+24587880 Msa0063850:CDS
AAGATATGGGTACAAATGTT+TGG 0.319140 1_2:-24584408 None:intergenic
TCTAATCTCATGATTAAGTT+TGG 0.324364 1_2:+24584832 Msa0063850:CDS
GTGGCATTGGAGTCAGAAAT+TGG 0.327611 1_2:-24589321 None:intergenic
AGGATAGTATTCACTGATTC+TGG 0.333253 1_2:-24589526 None:intergenic
GGTGGAAAGAAGCGGTTGTT+AGG 0.339576 1_2:-24584515 None:intergenic
CCTGCTGTTCTTCTTGTACA+TGG 0.339681 1_2:+24587810 Msa0063850:CDS
GAGGGAGTAACACGAAGATA+TGG 0.340476 1_2:-24584422 None:intergenic
TTTGGTCCTGCGCTGTCTTT+GGG 0.340755 1_2:+24587129 Msa0063850:CDS
TAAAGCTAAAGATGCTTTCC+AGG 0.341211 1_2:-24589106 None:intergenic
CACCTTGTTGGCAACTCAAT+TGG 0.341981 1_2:+24588017 Msa0063850:CDS
CACACAGGTGCTGCAAAATC+TGG 0.345524 1_2:+24586093 Msa0063850:intron
TTCAGAAATGGAACTAGATT+GGG 0.354787 1_2:+24586189 Msa0063850:CDS
TCCTGGTGTGCCTGTGGTCC+TGG 0.356320 1_2:+24589088 Msa0063850:CDS
AACATTACCTGGTTCAGAAA+TGG 0.360175 1_2:+24586177 Msa0063850:CDS
GCTATTACATTGTTAGGGTT+TGG 0.368642 1_2:+24587903 Msa0063850:CDS
TGCTGAAATCTAGTGAGAAC+AGG 0.371964 1_2:+24586457 Msa0063850:CDS
AGATATGGGTACAAATGTTT+GGG 0.376748 1_2:-24584407 None:intergenic
ATATATCTGTATTCATTCAT+AGG 0.378283 1_2:+24590580 Msa0063850:three_prime_UTR
TGAAAACAGGACATGGTACC+TGG 0.383931 1_2:+24589744 Msa0063850:three_prime_UTR
TTGCTATTGTTGCTCGAGTT+TGG 0.384643 1_2:+24588207 Msa0063850:CDS
GCAGGGTTCTTATCTCCCTT+TGG 0.386221 1_2:+24587210 Msa0063850:CDS
GACAAACGTCAGTGACTTCA+TGG 0.391121 1_2:+24588752 Msa0063850:CDS
TTCTGATGAAATGCTGGAAC+TGG 0.395021 1_2:+24584762 Msa0063850:CDS
TGAATACTATCCTTTGTGAT+TGG 0.400538 1_2:+24589536 Msa0063850:CDS
CAAATGTTTGGGTTTGGTAA+AGG 0.401865 1_2:-24584396 None:intergenic
GTTCAGAAATGGAACTAGAT+TGG 0.402765 1_2:+24586188 Msa0063850:CDS
CTGATTCTGGCACTTCATCA+TGG 0.403175 1_2:-24589513 None:intergenic
TGGGTACAAATGTTTGGGTT+TGG 0.404817 1_2:-24584402 None:intergenic
GACTTTATTGTTGATGTTGT+GGG 0.414569 1_2:+24587984 Msa0063850:CDS
CCCATCATATCATCATAAAC+AGG 0.415380 1_2:-24586348 None:intergenic
GCACTCCAAGGATTGAAGTA+TGG 0.416766 1_2:+24585662 Msa0063850:CDS
AAATGTTTGGGTTTGGTAAA+GGG 0.420333 1_2:-24584395 None:intergenic
TGATAATGGTAGAGATTTGA+TGG 0.424174 1_2:+24590481 Msa0063850:intron
TAATCATTATGTACAGTTGC+CGG 0.425230 1_2:-24589616 None:intergenic
CGAATACATAAATTGGAACT+AGG 0.426978 1_2:-24584646 None:intergenic
TCCTGTTTATGATGATATGA+TGG 0.429749 1_2:+24586347 Msa0063850:CDS
TGGAGTGCCTTGTGTAGCCT+TGG 0.436757 1_2:-24585647 None:intergenic
TGTTCGCTGTTCAAGATTTG+AGG 0.440399 1_2:+24584788 Msa0063850:CDS
TTCTTTCCACCTCGCCGTCT+CGG 0.440640 1_2:+24584527 Msa0063850:CDS
CATATCAAGTCTTATGATCC+TGG 0.441605 1_2:+24589071 Msa0063850:intron
GGAAAAGATTCTAATTATAC+AGG 0.443244 1_2:+24589169 Msa0063850:CDS
GGGGAACCGGTCCACCTTGT+TGG 0.443402 1_2:+24588005 Msa0063850:CDS
GTAACAAACACAGATTCATT+TGG 0.444156 1_2:-24586519 None:intergenic
ATGCATTGGCTGCATATTTG+AGG 0.450155 1_2:+24586586 Msa0063850:CDS
TCCTCAATTAAACTGAAAAC+AGG 0.451706 1_2:+24589731 Msa0063850:three_prime_UTR
CAACTGACACCGCCATTGTA+TGG 0.452717 1_2:+24584558 Msa0063850:CDS
CTTCAGCTTTCAACATTACC+TGG 0.455179 1_2:+24586166 Msa0063850:CDS
AGGGAACGGCTCGTGATGAT+TGG 0.459477 1_2:+24586616 Msa0063850:CDS
AAGCATAGCCACTGTGGCAT+TGG 0.460190 1_2:-24589334 None:intergenic
CTCAACTGCTGCTGCAATGG+TGG 0.464086 1_2:-24587244 None:intergenic
TATATATATTCATTTGGTAA+AGG 0.464346 1_2:-24590788 None:intergenic
AGACTTTATTGTTGATGTTG+TGG 0.466885 1_2:+24587983 Msa0063850:CDS
GAAGCTGCAGTGAGGAGTCC+AGG 0.469715 1_2:-24584611 None:intergenic
TAGAGCTGGAAATCGAGTTT+GGG 0.469953 1_2:+24587881 Msa0063850:CDS
TATACAATTGCCGGTGAAGA+TGG 0.471229 1_2:+24587786 Msa0063850:CDS
AAATATACCTAAAATGATAG+TGG 0.471514 1_2:-24590538 None:intergenic
GTTAGGGAAGCGGGAAAGTG+AGG 0.474853 1_2:-24584498 None:intergenic
CGTGCTTCAGAAAGTCGAAA+TGG 0.475834 1_2:+24587087 Msa0063850:CDS
CCGTGACAACATACACGGTT+TGG 0.476794 1_2:+24587857 Msa0063850:CDS
TACATAATGATTATAACAGC+AGG 0.478235 1_2:+24589626 Msa0063850:three_prime_UTR
AGATCGAAAGGGCAGATGAT+TGG 0.478592 1_2:+24588932 Msa0063850:CDS
AAGAAGATAGTTAAGAGGTA+TGG 0.479952 1_2:-24589135 None:intergenic
TTTGGGCTATTACATTGTTA+GGG 0.480583 1_2:+24587898 Msa0063850:CDS
TTGTATATACTGAGCTCTTG+TGG 0.481245 1_2:+24587946 Msa0063850:CDS
TGTATATACTGAGCTCTTGT+GGG 0.481366 1_2:+24587947 Msa0063850:CDS
TGATTCTGGCACTTCATCAT+GGG 0.483873 1_2:-24589512 None:intergenic
ATAATTAAGGAATTAGATGC+TGG 0.485194 1_2:+24589378 Msa0063850:CDS
CAAAGCTACTTGTGTATTTG+CGG 0.486980 1_2:+24585561 Msa0063850:CDS
GTCCAGGGTGATCGTCTGTT+CGG 0.487765 1_2:-24584595 None:intergenic
AACGTCAGTGACTTCATGGT+TGG 0.493568 1_2:+24588756 Msa0063850:CDS
GAAGCGGTTGTTAGGGAAGC+GGG 0.495250 1_2:-24584507 None:intergenic
AAAGGAAATGTTGTTGGAGG+TGG 0.498142 1_2:+24586546 Msa0063850:CDS
AGGAAGTCGTTGAAAGGTCG+TGG 0.502944 1_2:+24584808 Msa0063850:CDS
CACCATTGCAGCAGCAGTTG+AGG 0.503650 1_2:+24587245 Msa0063850:CDS
CAGCATTTCTCTGCCTAACA+AGG 0.504064 1_2:-24586439 None:intergenic
TATGAGAAAGAACGAAATGC+AGG 0.505695 1_2:+24587192 Msa0063850:CDS
AGAAATCAGATAAATAATGA+TGG 0.509438 1_2:+24587463 Msa0063850:CDS
ATTTAATGTACTAAATGCAT+TGG 0.509911 1_2:+24586572 Msa0063850:CDS
AGTCATCTCTTGATTTATGT+CGG 0.511289 1_2:-24586386 None:intergenic
AGCCTCAACTGCTGCTGCAA+TGG 0.511346 1_2:-24587247 None:intergenic
GAAAACAGTCAACACGGGTA+TGG 0.511478 1_2:+24587485 Msa0063850:CDS
GTATGAGCTCTGCTTTATCA+TGG 0.513231 1_2:+24585597 Msa0063850:CDS
AGTCAACACGGGTATGGAGC+TGG 0.515119 1_2:+24587491 Msa0063850:CDS
ATTGTCTTGATAAACAGTGC+TGG 0.518060 1_2:+24588248 Msa0063850:CDS
TTATCAACAAACTGTAAAGA+AGG 0.518475 1_2:-24589692 None:intergenic
CTTGTTGGCAACTCAATTGG+TGG 0.520296 1_2:+24588020 Msa0063850:CDS
TCCTTTGTGATTGGATACAA+AGG 0.520584 1_2:+24589545 Msa0063850:CDS
CTTACACTTGGCTTAGACAA+TGG 0.522594 1_2:-24588299 None:intergenic
GTGGAAAGAAGCGGTTGTTA+GGG 0.526265 1_2:-24584514 None:intergenic
TCTTCAAGAAGATAGTTAAG+AGG 0.526413 1_2:-24589140 None:intergenic
CTATCTTCTTGAAGATGTCA+AGG 0.530261 1_2:+24589148 Msa0063850:CDS
TGCATATTTGAGGTATTTGG+AGG 0.532972 1_2:+24586596 Msa0063850:CDS
AAGGAAAATGCGGGAAAGTG+AGG 0.535206 1_2:-24584466 None:intergenic
ACGTCAGTGACTTCATGGTT+GGG 0.536315 1_2:+24588757 Msa0063850:CDS
GATACACCAGCTTGCTACTC+AGG 0.536461 1_2:+24584870 Msa0063850:CDS
CCTTTGTGATTGGATACAAA+GGG 0.536638 1_2:+24589546 Msa0063850:CDS
CCTGTTTATGATGATATGAT+GGG 0.544219 1_2:+24586348 Msa0063850:CDS
ATTTGATGGAGAGTTCAAGT+GGG 0.551359 1_2:+24590495 Msa0063850:three_prime_UTR
AGGGAGTAACACGAAGATAT+GGG 0.551517 1_2:-24584421 None:intergenic
GAATACATAAATTGGAACTA+GGG 0.551772 1_2:-24584645 None:intergenic
GATTTGATGGAGAGTTCAAG+TGG 0.551900 1_2:+24590494 Msa0063850:three_prime_UTR
TTGTCTTGATAAACAGTGCT+GGG 0.551930 1_2:+24588249 Msa0063850:CDS
TTTGAGGTATTTGGAGGGAA+CGG 0.551995 1_2:+24586602 Msa0063850:CDS
GACATAAATCAAGAGATGAC+TGG 0.552493 1_2:+24586388 Msa0063850:CDS
TACAATGGCGGTGTCAGTTG+CGG 0.552980 1_2:-24584555 None:intergenic
ACATCAGCTGAAACCTTGTT+AGG 0.553481 1_2:+24586426 Msa0063850:CDS
TCTAGTTCCATTTCTGAACC+AGG 0.554130 1_2:-24586184 None:intergenic
TGTATTTGCGGAACAAGAGG+TGG 0.556168 1_2:+24585573 Msa0063850:CDS
ACACGGGTATGGAGCTGGAA+TGG 0.558876 1_2:+24587496 Msa0063850:CDS
AGATGACTGGAATTTGATCA+AGG 0.559141 1_2:+24586401 Msa0063850:CDS
ATGATGACTTTGAGAAACTA+CGG 0.560590 1_2:+24586125 Msa0063850:CDS
AGCACAATATGCACAAGCCC+AGG 0.562581 1_2:-24589762 None:intergenic
GATTTGAGGAAGTCGTTGAA+AGG 0.562668 1_2:+24584802 Msa0063850:CDS
GTCGTCATGGATAGCGGTGA+GGG 0.562699 1_2:-24584440 None:intergenic
TCCAGGACCACAGGCACACC+AGG 0.564941 1_2:-24589089 None:intergenic
GAAAATTGGAAGGAAAATGC+GGG 0.569149 1_2:-24584475 None:intergenic
GGAAAATTGGAAGGAAAATG+CGG 0.570033 1_2:-24584476 None:intergenic
GAGTTGCCAACAAGGTGGAC+CGG 0.571836 1_2:-24588011 None:intergenic
CCATGTACAAGAAGAACAGC+AGG 0.572158 1_2:-24587810 None:intergenic
TGCTTTGCAGAAGATCGAAA+GGG 0.572339 1_2:+24588921 Msa0063850:intron
CACCAATTGAGTTGCCAACA+AGG 0.572948 1_2:-24588019 None:intergenic
AACAGCAGGACCATCTTCAC+CGG 0.573387 1_2:-24587796 None:intergenic
GCACTTCATCATGGGGACAG+TGG 0.574452 1_2:-24589504 None:intergenic
TTGTGTATTTGCGGAACAAG+AGG 0.575726 1_2:+24585570 Msa0063850:CDS
GTGCTTTGCAGAAGATCGAA+AGG 0.578448 1_2:+24588920 Msa0063850:intron
TTAGGGAAGCGGGAAAGTGA+GGG 0.580284 1_2:-24584497 None:intergenic
AAGATGCTTTCCAGGACCAC+AGG 0.585145 1_2:-24589098 None:intergenic
CTCCGAACAGACGATCACCC+TGG 0.585613 1_2:+24584593 Msa0063850:CDS
ATACACGGTTTGGCTAGAGC+TGG 0.586316 1_2:+24587867 Msa0063850:CDS
GAAAGTGAGGAGAGTCGTCA+TGG 0.588023 1_2:-24584453 None:intergenic
CCAAACCGTGTATGTTGTCA+CGG 0.588302 1_2:-24587857 None:intergenic
TTATGATCCTGGTGTGCCTG+TGG 0.590576 1_2:+24589082 Msa0063850:CDS
CTTTATTGTTGATGTTGTGG+GGG 0.593635 1_2:+24587986 Msa0063850:CDS
AGTTGAGGCTGTGTGTTCGA+AGG 0.597781 1_2:+24587260 Msa0063850:CDS
TTTGATGGAGAGTTCAAGTG+GGG 0.599384 1_2:+24590496 Msa0063850:three_prime_UTR
CCTTGGTTGATTTCAAACGA+TGG 0.599684 1_2:-24585630 None:intergenic
AGCACTGTTTATCAAGACAA+TGG 0.601181 1_2:-24588246 None:intergenic
TCAAGTGGGGATGTTAAGCA+TGG 0.604498 1_2:+24590509 Msa0063850:three_prime_UTR
AGAAGCGGTTGTTAGGGAAG+CGG 0.608799 1_2:-24584508 None:intergenic
CTCTTTAAGCATAGCCACTG+TGG 0.610327 1_2:-24589340 None:intergenic
GCTGAAGTGGTGTAGTCACA+TGG 0.611717 1_2:-24586150 None:intergenic
TCAGAAATGGAACTAGATTG+GGG 0.613351 1_2:+24586190 Msa0063850:CDS
AAGCTGCAGTGAGGAGTCCA+GGG 0.615731 1_2:-24584610 None:intergenic
GAAAGTGAGGGAAAATTGGA+AGG 0.616704 1_2:-24584485 None:intergenic
CAAGTACCTGAGTAGCAAGC+TGG 0.617702 1_2:-24584876 None:intergenic
GAAAACAGGACATGGTACCT+GGG 0.619075 1_2:+24589745 Msa0063850:three_prime_UTR
CATTACCGTGACAACATACA+CGG 0.621080 1_2:+24587852 Msa0063850:CDS
GCATATTTGAGGTATTTGGA+GGG 0.621876 1_2:+24586597 Msa0063850:CDS
AGGCTACACAAGGCACTCCA+AGG 0.624878 1_2:+24585650 Msa0063850:CDS
ACTTTATTGTTGATGTTGTG+GGG 0.627427 1_2:+24587985 Msa0063850:CDS
ATAATTCCCAAAGACAGCGC+AGG 0.628587 1_2:-24587135 None:intergenic
GTGGCAGCTGAATATCCAAA+GGG 0.629662 1_2:-24587225 None:intergenic
TGAGGCTGTGTGTTCGAAGG+AGG 0.632016 1_2:+24587263 Msa0063850:CDS
GGTGGCAGCTGAATATCCAA+AGG 0.632948 1_2:-24587226 None:intergenic
GCTGAAATCTAGTGAGAACA+GGG 0.634491 1_2:+24586458 Msa0063850:CDS
GATACTTACTCGAAAGAATG+CGG 0.635162 1_2:-24584673 None:intergenic
ATGAGAAAGAACGAAATGCA+GGG 0.638724 1_2:+24587193 Msa0063850:CDS
CAGTTGCGGTTGAACCGAGA+CGG 0.640580 1_2:-24584541 None:intergenic
AGGAGAGTCGTCATGGATAG+CGG 0.644683 1_2:-24584446 None:intergenic
AAATCAACCAAGGCTACACA+AGG 0.646853 1_2:+24585640 Msa0063850:CDS
GGTAATGTTGAAAGCTGAAG+TGG 0.646946 1_2:-24586163 None:intergenic
CTGTAAAGAAGGCATAGCAG+TGG 0.652498 1_2:-24589681 None:intergenic
GACGGCGAGGTGGAAAGAAG+CGG 0.656048 1_2:-24584523 None:intergenic
GATTCTGGCACTTCATCATG+GGG 0.656651 1_2:-24589511 None:intergenic
ATGATGGAAAACAGTCAACA+CGG 0.661126 1_2:+24587479 Msa0063850:CDS
GCGGTTGAACCGAGACGGCG+AGG 0.666010 1_2:-24584536 None:intergenic
AGTCGTCATGGATAGCGGTG+AGG 0.669595 1_2:-24584441 None:intergenic
GTTGAACCGAGACGGCGAGG+TGG 0.670252 1_2:-24584533 None:intergenic
TTCTGACTCCAATGCCACAG+TGG 0.674350 1_2:+24589326 Msa0063850:CDS
TGATGGAAAACAGTCAACAC+GGG 0.674513 1_2:+24587480 Msa0063850:CDS
ACATAATGATTATAACAGCA+GGG 0.675845 1_2:+24589627 Msa0063850:three_prime_UTR
CCCTTTGTATCCAATCACAA+AGG 0.677588 1_2:-24589546 None:intergenic
ATTAAACTGAAAACAGGACA+TGG 0.681300 1_2:+24589737 Msa0063850:three_prime_UTR
ATGCTTAAAGAGCATTGTGA+TGG 0.681695 1_2:+24589351 Msa0063850:CDS
ATCGTGTTTGAACCATACAA+TGG 0.682012 1_2:-24584570 None:intergenic
CCATCGTTTGAAATCAACCA+AGG 0.682883 1_2:+24585630 Msa0063850:CDS
CAATTGAGTTGCCAACAAGG+TGG 0.702074 1_2:-24588016 None:intergenic
GAAAATTGGAAGCTGCAGTG+AGG 0.709487 1_2:-24584619 None:intergenic
GTGTTTGAACCATACAATGG+CGG 0.734624 1_2:-24584567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATTTATAAACATATATT+TGG + chr1_2:24588044-24588063 Msa0063850:intron 10.0%
!!! TTTTTTATTTCATTTTGTTA+GGG + chr1_2:24589288-24589307 Msa0063850:intron 10.0%
!!! TAGAATATTTTTTAAAGTAT+TGG - chr1_2:24589810-24589829 None:intergenic 10.0%
!!! TACTTTAAAAAATATTCTAT+TGG + chr1_2:24589811-24589830 Msa0063850:intron 10.0%
!! GATATTATTGACAAAAAAAA+CGG - chr1_2:24585227-24585246 None:intergenic 15.0%
!!! GTTTTAAGATAAAAGTAAAA+AGG - chr1_2:24585507-24585526 None:intergenic 15.0%
!! TTAAAACAAATTCAATTCAT+CGG + chr1_2:24585520-24585539 Msa0063850:intron 15.0%
!! TACAATTTCAGATATTAAAT+TGG - chr1_2:24585774-24585793 None:intergenic 15.0%
!!! AATTTAATATCTGAAATTGT+AGG + chr1_2:24585773-24585792 Msa0063850:intron 15.0%
!!! TTCAATCAAATTAATCTTTT+TGG + chr1_2:24585857-24585876 Msa0063850:intron 15.0%
!! TCAATGTAATAAAGAAAAAT+TGG - chr1_2:24586794-24586813 None:intergenic 15.0%
!!! AAAGGAGTTAATTTAATTTT+TGG + chr1_2:24587411-24587430 Msa0063850:intron 15.0%
!!! TTTCAATTCAAAAAAGTATA+CGG - chr1_2:24588534-24588553 None:intergenic 15.0%
!!! GTTTTTTATTTCATTTTGTT+AGG + chr1_2:24589287-24589306 Msa0063850:intron 15.0%
!!! AAAAGATCAATTTAAAACAA+AGG - chr1_2:24589463-24589482 None:intergenic 15.0%
!!! ATATTTTTTAAAGTATTGGA+AGG - chr1_2:24589806-24589825 None:intergenic 15.0%
!!! TTTATATTCTCCTTTTTTAT+TGG - chr1_2:24590759-24590778 None:intergenic 15.0%
!! TCCATAACAAAATAGATTAA+CGG + chr1_2:24584956-24584975 Msa0063850:intron 20.0%
!! TTAAAAATTCAAAGTGACAT+TGG + chr1_2:24585201-24585220 Msa0063850:intron 20.0%
!! AATCAGAGAAATATGTAAAA+TGG + chr1_2:24585263-24585282 Msa0063850:intron 20.0%
!! ATCAGAGAAATATGTAAAAT+GGG + chr1_2:24585264-24585283 Msa0063850:intron 20.0%
!!! AATATAATTAAGAGTGTCAT+AGG + chr1_2:24585290-24585309 Msa0063850:intron 20.0%
!!! ATATAATTAAGAGTGTCATA+GGG + chr1_2:24585291-24585310 Msa0063850:intron 20.0%
!!! ACTGATTCTAACATTTTTAT+TGG + chr1_2:24585739-24585758 Msa0063850:intron 20.0%
!! AATTTCAGATATTAAATTGG+TGG - chr1_2:24585771-24585790 None:intergenic 20.0%
!!! TTGGAGTTTCATTAATTTTA+AGG - chr1_2:24585815-24585834 None:intergenic 20.0%
!!! ATCAAATTAATCTTTTTGGT+TGG + chr1_2:24585861-24585880 Msa0063850:intron 20.0%
!!! TCAAATTAATCTTTTTGGTT+GGG + chr1_2:24585862-24585881 Msa0063850:intron 20.0%
!! GATTATTATAATTATCACAC+AGG + chr1_2:24586078-24586097 Msa0063850:intron 20.0%
!! ATTTAATGTACTAAATGCAT+TGG + chr1_2:24586572-24586591 Msa0063850:CDS 20.0%
!! ACAAATTGATATTGTCTTAT+TGG + chr1_2:24587319-24587338 Msa0063850:intron 20.0%
!!! TTTGTTCTCTTTTTTATCAA+AGG + chr1_2:24587393-24587412 Msa0063850:intron 20.0%
!!! GAGTTAATTTAATTTTTGGT+TGG + chr1_2:24587415-24587434 Msa0063850:intron 20.0%
!! AGAAATCAGATAAATAATGA+TGG + chr1_2:24587463-24587482 Msa0063850:CDS 20.0%
!! GTTCTTAACTTATTTCAAAT+GGG - chr1_2:24587704-24587723 None:intergenic 20.0%
!! AGTTCTTAACTTATTTCAAA+TGG - chr1_2:24587705-24587724 None:intergenic 20.0%
!!! AAACAAAAGTGCTAATTTAT+TGG + chr1_2:24587745-24587764 Msa0063850:intron 20.0%
!!! AAGAGATTTATTTTGTAGAA+AGG - chr1_2:24588074-24588093 None:intergenic 20.0%
!!! CTATTGAAGATTTTACAAAA+TGG - chr1_2:24588458-24588477 None:intergenic 20.0%
!! TGTTAAATGAATCTTAAAGT+TGG + chr1_2:24588583-24588602 Msa0063850:intron 20.0%
!! ATATTGTCTAATTAAATGTC+AGG - chr1_2:24588625-24588644 None:intergenic 20.0%
!! ATCAATTAATTCTATCTTTC+TGG - chr1_2:24589229-24589248 None:intergenic 20.0%
!! ATGTAAAACATGAAGAAAAT+TGG - chr1_2:24589846-24589865 None:intergenic 20.0%
!!! AATGACATTTTAGTTAGATA+TGG - chr1_2:24590182-24590201 None:intergenic 20.0%
!! TATCGAAAATTCGTTTATTT+AGG - chr1_2:24590244-24590263 None:intergenic 20.0%
!! TTATATTGAGAGATATGAAT+GGG + chr1_2:24590271-24590290 Msa0063850:intron 20.0%
!! AAATATACCTAAAATGATAG+TGG - chr1_2:24590541-24590560 None:intergenic 20.0%
!! ATATATCTGTATTCATTCAT+AGG + chr1_2:24590580-24590599 Msa0063850:three_prime_UTR 20.0%
! GAATACATAAATTGGAACTA+GGG - chr1_2:24584648-24584667 None:intergenic 25.0%
! TCTAATCTCATGATTAAGTT+TGG + chr1_2:24584832-24584851 Msa0063850:CDS 25.0%
!! ACCGTTAATCTATTTTGTTA+TGG - chr1_2:24584960-24584979 None:intergenic 25.0%
!!! GCTGTTTTTATAAGCTATTA+TGG + chr1_2:24584997-24585016 Msa0063850:intron 25.0%
! AATAGATTGAAAACAGCTTA+TGG + chr1_2:24585032-24585051 Msa0063850:intron 25.0%
!! CCTACATTTTCATCATATAA+TGG - chr1_2:24585694-24585713 None:intergenic 25.0%
! CCATTATATGATGAAAATGT+AGG + chr1_2:24585691-24585710 Msa0063850:intron 25.0%
! TTTAGTCCTTGAAATTATAC+AGG - chr1_2:24585955-24585974 None:intergenic 25.0%
! TTATCTCTCTACAAGATTAT+TGG + chr1_2:24586257-24586276 Msa0063850:intron 25.0%
!! AACAATTATCACATGACTTT+TGG - chr1_2:24586309-24586328 None:intergenic 25.0%
! TGATAATTGTTCACTGAATT+AGG + chr1_2:24586318-24586337 Msa0063850:intron 25.0%
!!! CTAAGATTCTGTTTCTTTTT+TGG + chr1_2:24586666-24586685 Msa0063850:intron 25.0%
!!! TTTCTTTTTTGGCAATTTTC+AGG + chr1_2:24586677-24586696 Msa0063850:intron 25.0%
!! TTGATATTGTCTTATTGGTT+TGG + chr1_2:24587324-24587343 Msa0063850:intron 25.0%
! TTTGTCTTATCTGTTATACA+TGG + chr1_2:24587348-24587367 Msa0063850:intron 25.0%
! TTGTCTTATCTGTTATACAT+GGG + chr1_2:24587349-24587368 Msa0063850:intron 25.0%
! AGAACAAAAAACAAAGATCA+AGG - chr1_2:24587381-24587400 None:intergenic 25.0%
! AGCTCAGTATATACAATATT+TGG - chr1_2:24587942-24587961 None:intergenic 25.0%
!! TGAAGATTTTACAAAATGGA+GGG - chr1_2:24588454-24588473 None:intergenic 25.0%
!! TTGAAGATTTTACAAAATGG+AGG - chr1_2:24588455-24588474 None:intergenic 25.0%
! GTAAAATCTTCAATAGAAGT+TGG + chr1_2:24588462-24588481 Msa0063850:intron 25.0%
! TACACTTAAGGCAAATATTA+AGG - chr1_2:24588505-24588524 None:intergenic 25.0%
! GCATATTATTATGCACATTT+GGG - chr1_2:24588563-24588582 None:intergenic 25.0%
! AGCATATTATTATGCACATT+TGG - chr1_2:24588564-24588583 None:intergenic 25.0%
!! CTATTTACTTGTTAACTTTC+AGG + chr1_2:24588726-24588745 Msa0063850:intron 25.0%
!!! GAATTCTTTTGTTTTACTTG+AGG + chr1_2:24588785-24588804 Msa0063850:CDS 25.0%
! ACAAAAATTACACTTACTGT+TGG - chr1_2:24588844-24588863 None:intergenic 25.0%
! AGATTATAGAAGTAAACTAG+AGG - chr1_2:24588986-24589005 None:intergenic 25.0%
! TAAATTATTTGTATTGCACC+AGG + chr1_2:24589005-24589024 Msa0063850:intron 25.0%
! AAATTATTTGTATTGCACCA+GGG + chr1_2:24589006-24589025 Msa0063850:intron 25.0%
! TCATAAGACTTGATATGTAA+AGG - chr1_2:24589068-24589087 None:intergenic 25.0%
! GGAAAAGATTCTAATTATAC+AGG + chr1_2:24589169-24589188 Msa0063850:CDS 25.0%
!! ATTATACAGGTATTGTAACA+TGG + chr1_2:24589182-24589201 Msa0063850:intron 25.0%
!!! TTGTGATGGTGTTATAATTA+AGG + chr1_2:24589365-24589384 Msa0063850:CDS 25.0%
! ATAATTAAGGAATTAGATGC+TGG + chr1_2:24589378-24589397 Msa0063850:CDS 25.0%
!! TCAATTTAAAACAAAGGCTA+AGG - chr1_2:24589457-24589476 None:intergenic 25.0%
!! TTTCTTTTGCTTAACATTAC+AGG + chr1_2:24589481-24589500 Msa0063850:intron 25.0%
!!! TTGAAAGTAACATTTTAGCA+GGG + chr1_2:24589569-24589588 Msa0063850:CDS 25.0%
! TACATAATGATTATAACAGC+AGG + chr1_2:24589626-24589645 Msa0063850:three_prime_UTR 25.0%
! ACATAATGATTATAACAGCA+GGG + chr1_2:24589627-24589646 Msa0063850:three_prime_UTR 25.0%
! TTATCAACAAACTGTAAAGA+AGG - chr1_2:24589695-24589714 None:intergenic 25.0%
!!! CTTTACAGTTTGTTGATAAA+TGG + chr1_2:24589696-24589715 Msa0063850:three_prime_UTR 25.0%
! TAAAACATGAAGAAAATTGG+AGG - chr1_2:24589843-24589862 None:intergenic 25.0%
! TGATAGATGCTTAAATTACA+AGG + chr1_2:24589983-24590002 Msa0063850:intron 25.0%
! ACACTTATAGATATAAAGTC+AGG - chr1_2:24590016-24590035 None:intergenic 25.0%
! AGGTTCATAATATTGCTTTA+AGG - chr1_2:24590132-24590151 None:intergenic 25.0%
! TTCTAGATATCAGATTATGA+TGG + chr1_2:24590201-24590220 Msa0063850:intron 25.0%
! CTTATATTGAGAGATATGAA+TGG + chr1_2:24590270-24590289 Msa0063850:intron 25.0%
! TGTTCATATACTTGTGATAA+TGG + chr1_2:24590467-24590486 Msa0063850:intron 25.0%
!! TTGTTGTTGTATTCATTCAT+AGG + chr1_2:24590636-24590655 Msa0063850:intron 25.0%
! GTGTTGTATAATGTATTCAT+TGG + chr1_2:24590709-24590728 Msa0063850:intron 25.0%
! TTGTATAATGTATTCATTGG+TGG + chr1_2:24590712-24590731 Msa0063850:intron 25.0%
! AAATGTTTGGGTTTGGTAAA+GGG - chr1_2:24584398-24584417 None:intergenic 30.0%
AGATATGGGTACAAATGTTT+GGG - chr1_2:24584410-24584429 None:intergenic 30.0%
AAGATATGGGTACAAATGTT+TGG - chr1_2:24584411-24584430 None:intergenic 30.0%
CGAATACATAAATTGGAACT+AGG - chr1_2:24584649-24584668 None:intergenic 30.0%
!!! TTGGTTTTTTTGGCAATGTT+TGG + chr1_2:24584896-24584915 Msa0063850:intron 30.0%
! ACGAATTTTCACTTAACTAC+TGG - chr1_2:24585118-24585137 None:intergenic 30.0%
GCTGAAAGAACTAATACTTA+GGG - chr1_2:24585154-24585173 None:intergenic 30.0%
TGCTGAAAGAACTAATACTT+AGG - chr1_2:24585155-24585174 None:intergenic 30.0%
! GACTCTCATTTTCATTTGTT+TGG + chr1_2:24585980-24585999 Msa0063850:intron 30.0%
!! TTTGTTTGGTTGAGTTGATT+AGG + chr1_2:24585994-24586013 Msa0063850:intron 30.0%
! ATGATGACTTTGAGAAACTA+CGG + chr1_2:24586125-24586144 Msa0063850:CDS 30.0%
TTCAGAAATGGAACTAGATT+GGG + chr1_2:24586189-24586208 Msa0063850:CDS 30.0%
TCCTGTTTATGATGATATGA+TGG + chr1_2:24586347-24586366 Msa0063850:CDS 30.0%
CCTGTTTATGATGATATGAT+GGG + chr1_2:24586348-24586367 Msa0063850:CDS 30.0%
! TGATGATATGATGGGATTTA+TGG + chr1_2:24586356-24586375 Msa0063850:CDS 30.0%
AGTCATCTCTTGATTTATGT+CGG - chr1_2:24586389-24586408 None:intergenic 30.0%
GTAACAAACACAGATTCATT+TGG - chr1_2:24586522-24586541 None:intergenic 30.0%
! TCTGTGTTTGTTACACAAAA+AGG + chr1_2:24586528-24586547 Msa0063850:CDS 30.0%
ACACAAAAAGGAAATGTTGT+TGG + chr1_2:24586540-24586559 Msa0063850:CDS 30.0%
GAAACAGAATCTTAGAAAGA+GGG - chr1_2:24586661-24586680 None:intergenic 30.0%
AGAAACAGAATCTTAGAAAG+AGG - chr1_2:24586662-24586681 None:intergenic 30.0%
CAAAAAGCAGAAAACAAAGA+AGG - chr1_2:24586755-24586774 None:intergenic 30.0%
!!! TTAGTTTTGTTTACCTCGAA+CGG + chr1_2:24586879-24586898 Msa0063850:intron 30.0%
TTCAACACATGTTTCATTTG+CGG + chr1_2:24586962-24586981 Msa0063850:intron 30.0%
GCATCATTTATTGCACTATT+TGG + chr1_2:24587111-24587130 Msa0063850:CDS 30.0%
!!! TTTAATTTTTGGTTGGCTAG+TGG + chr1_2:24587422-24587441 Msa0063850:intron 30.0%
!! TGTTCAGGTATTGAATTGAT+TGG + chr1_2:24587525-24587544 Msa0063850:intron 30.0%
TTTGTCCCAACAAATTTATG+TGG + chr1_2:24587645-24587664 Msa0063850:intron 30.0%
TTGTCCCAACAAATTTATGT+GGG + chr1_2:24587646-24587665 Msa0063850:intron 30.0%
ATCATGTTGGTCATACATTT+GGG - chr1_2:24587673-24587692 None:intergenic 30.0%
AATCATGTTGGTCATACATT+TGG - chr1_2:24587674-24587693 None:intergenic 30.0%
! TTTTCTCAGTATACAATTGC+CGG + chr1_2:24587777-24587796 Msa0063850:intron 30.0%
TTTGGGCTATTACATTGTTA+GGG + chr1_2:24587898-24587917 Msa0063850:CDS 30.0%
AGACTTTATTGTTGATGTTG+TGG + chr1_2:24587983-24588002 Msa0063850:CDS 30.0%
GACTTTATTGTTGATGTTGT+GGG + chr1_2:24587984-24588003 Msa0063850:CDS 30.0%
ACTTTATTGTTGATGTTGTG+GGG + chr1_2:24587985-24588004 Msa0063850:CDS 30.0%
! AAGATTTTACAAAATGGAGG+GGG - chr1_2:24588452-24588471 None:intergenic 30.0%
! GAAGATTTTACAAAATGGAG+GGG - chr1_2:24588453-24588472 None:intergenic 30.0%
TATTATTATGCACATTTGGG+TGG - chr1_2:24588560-24588579 None:intergenic 30.0%
ATATATTAGAATGTGAACCC+TGG - chr1_2:24589026-24589045 None:intergenic 30.0%
AAGAAGATAGTTAAGAGGTA+TGG - chr1_2:24589138-24589157 None:intergenic 30.0%
TCTTCAAGAAGATAGTTAAG+AGG - chr1_2:24589143-24589162 None:intergenic 30.0%
! AACATGGATTTGAAATGTTG+TGG + chr1_2:24589198-24589217 Msa0063850:intron 30.0%
! ACATGGATTTGAAATGTTGT+GGG + chr1_2:24589199-24589218 Msa0063850:intron 30.0%
GATACTGAATGATAATTCTC+TGG + chr1_2:24589246-24589265 Msa0063850:intron 30.0%
TGAATACTATCCTTTGTGAT+TGG + chr1_2:24589536-24589555 Msa0063850:CDS 30.0%
!! GTTGAAAGTAACATTTTAGC+AGG + chr1_2:24589568-24589587 Msa0063850:CDS 30.0%
GACGTCAAAAAGATTATACT+TGG - chr1_2:24589597-24589616 None:intergenic 30.0%
! AGTATAATCTTTTTGACGTC+CGG + chr1_2:24589597-24589616 Msa0063850:exon 30.0%
TAATCATTATGTACAGTTGC+CGG - chr1_2:24589619-24589638 None:intergenic 30.0%
ACTAGTATATTAATGGAGTC+TGG - chr1_2:24589661-24589680 None:intergenic 30.0%
TCCTCAATTAAACTGAAAAC+AGG + chr1_2:24589731-24589750 Msa0063850:three_prime_UTR 30.0%
! TCCTGTTTTCAGTTTAATTG+AGG - chr1_2:24589735-24589754 None:intergenic 30.0%
ATTAAACTGAAAACAGGACA+TGG + chr1_2:24589737-24589756 Msa0063850:three_prime_UTR 30.0%
!! CATAATATTGCTTTAAGGCT+AGG - chr1_2:24590127-24590146 None:intergenic 30.0%
GATAATTTATCTGACGTTGA+AGG - chr1_2:24590152-24590171 None:intergenic 30.0%
! TTCGTTTATTTAGGATCACA+AGG - chr1_2:24590235-24590254 None:intergenic 30.0%
!! TGATAATGGTAGAGATTTGA+TGG + chr1_2:24590481-24590500 Msa0063850:intron 30.0%
! CAAATGTTTGGGTTTGGTAA+AGG - chr1_2:24584399-24584418 None:intergenic 35.0%
GAAAATTGGAAGGAAAATGC+GGG - chr1_2:24584478-24584497 None:intergenic 35.0%
GGAAAATTGGAAGGAAAATG+CGG - chr1_2:24584479-24584498 None:intergenic 35.0%
ATCGTGTTTGAACCATACAA+TGG - chr1_2:24584573-24584592 None:intergenic 35.0%
TGGAACTAGGGATTGAAAAT+TGG - chr1_2:24584636-24584655 None:intergenic 35.0%
CGGTGATCGAATACATAAAT+TGG - chr1_2:24584656-24584675 None:intergenic 35.0%
GATACTTACTCGAAAGAATG+CGG - chr1_2:24584676-24584695 None:intergenic 35.0%
ATCAAACTTCATCGAAGTGT+TGG + chr1_2:24584693-24584712 Msa0063850:intron 35.0%
! AAACTGACTCACTCTATTGA+TGG + chr1_2:24584716-24584735 Msa0063850:intron 35.0%
!!! ACTCAGGTACTTGGTTTTTT+TGG + chr1_2:24584886-24584905 Msa0063850:intron 35.0%
TCAACACATTGCAATCCATT+GGG + chr1_2:24585437-24585456 Msa0063850:intron 35.0%
AAATTCAATTCATCGGTCTC+AGG + chr1_2:24585527-24585546 Msa0063850:intron 35.0%
CAAAGCTACTTGTGTATTTG+CGG + chr1_2:24585561-24585580 Msa0063850:CDS 35.0%
! GTTTTCCATACTTCAATCCT+TGG - chr1_2:24585670-24585689 None:intergenic 35.0%
GTCCTTGAAATTATACAGGT+GGG - chr1_2:24585951-24585970 None:intergenic 35.0%
AGTCCTTGAAATTATACAGG+TGG - chr1_2:24585952-24585971 None:intergenic 35.0%
AGAATGTCAAACTTGTGTCA+TGG + chr1_2:24586019-24586038 Msa0063850:intron 35.0%
AACATTACCTGGTTCAGAAA+TGG + chr1_2:24586177-24586196 Msa0063850:CDS 35.0%
GTTCAGAAATGGAACTAGAT+TGG + chr1_2:24586188-24586207 Msa0063850:CDS 35.0%
TCAGAAATGGAACTAGATTG+GGG + chr1_2:24586190-24586209 Msa0063850:CDS 35.0%
!! TGTGGATGGATTTTCTTATC+AGG + chr1_2:24586219-24586238 Msa0063850:intron 35.0%
GGATATGTTGATGCACTTTA+CGG + chr1_2:24586278-24586297 Msa0063850:intron 35.0%
CCCATCATATCATCATAAAC+AGG - chr1_2:24586351-24586370 None:intergenic 35.0%
GACATAAATCAAGAGATGAC+TGG + chr1_2:24586388-24586407 Msa0063850:CDS 35.0%
AGATGACTGGAATTTGATCA+AGG + chr1_2:24586401-24586420 Msa0063850:CDS 35.0%
CAAAAAGGAAATGTTGTTGG+AGG + chr1_2:24586543-24586562 Msa0063850:CDS 35.0%
! TGCATATTTGAGGTATTTGG+AGG + chr1_2:24586596-24586615 Msa0063850:CDS 35.0%
! GCATATTTGAGGTATTTGGA+GGG + chr1_2:24586597-24586616 Msa0063850:CDS 35.0%
TGTTTCTCCGTATCATTAGA+AGG + chr1_2:24586821-24586840 Msa0063850:intron 35.0%
GTTTCTCCGTATCATTAGAA+GGG + chr1_2:24586822-24586841 Msa0063850:intron 35.0%
TGTATGCCCTTCTAATGATA+CGG - chr1_2:24586831-24586850 None:intergenic 35.0%
!!! TAGTTTTGTTTACCTCGAAC+GGG + chr1_2:24586880-24586899 Msa0063850:intron 35.0%
CTTTGCCTTAAATTTGTGCA+GGG + chr1_2:24587050-24587069 Msa0063850:intron 35.0%
TATGAGAAAGAACGAAATGC+AGG + chr1_2:24587192-24587211 Msa0063850:CDS 35.0%
ATGAGAAAGAACGAAATGCA+GGG + chr1_2:24587193-24587212 Msa0063850:CDS 35.0%
! ATGATGGAAAACAGTCAACA+CGG + chr1_2:24587479-24587498 Msa0063850:CDS 35.0%
TTACTATCACGAGAAATGCT+AGG + chr1_2:24587568-24587587 Msa0063850:intron 35.0%
TACTATCACGAGAAATGCTA+GGG + chr1_2:24587569-24587588 Msa0063850:intron 35.0%
GTATGACCAACATGATTTAG+TGG + chr1_2:24587677-24587696 Msa0063850:intron 35.0%
! GTTCTTCTTGTACATGGTTT+TGG + chr1_2:24587816-24587835 Msa0063850:CDS 35.0%
!!! TACATGGTTTTGGTGCATTT+GGG + chr1_2:24587826-24587845 Msa0063850:CDS 35.0%
GTTTGGGCTATTACATTGTT+AGG + chr1_2:24587897-24587916 Msa0063850:CDS 35.0%
GCTATTACATTGTTAGGGTT+TGG + chr1_2:24587903-24587922 Msa0063850:CDS 35.0%
TTGTATATACTGAGCTCTTG+TGG + chr1_2:24587946-24587965 Msa0063850:CDS 35.0%
TGTATATACTGAGCTCTTGT+GGG + chr1_2:24587947-24587966 Msa0063850:CDS 35.0%
CTTTATTGTTGATGTTGTGG+GGG + chr1_2:24587986-24588005 Msa0063850:CDS 35.0%
TCAAAAACATCAACAGAAGC+AGG - chr1_2:24588151-24588170 None:intergenic 35.0%
! TACATATTTTTCGCTACTCC+AGG + chr1_2:24588176-24588195 Msa0063850:intron 35.0%
ACAATAGCAACAATGTAACC+TGG - chr1_2:24588197-24588216 None:intergenic 35.0%
AGCACTGTTTATCAAGACAA+TGG - chr1_2:24588249-24588268 None:intergenic 35.0%
ATTGTCTTGATAAACAGTGC+TGG + chr1_2:24588248-24588267 Msa0063850:CDS 35.0%
TTGTCTTGATAAACAGTGCT+GGG + chr1_2:24588249-24588268 Msa0063850:CDS 35.0%
CATACTACACTAGTAAGACA+TGG + chr1_2:24588336-24588355 Msa0063850:intron 35.0%
!! TGGAGGGGGAAATTTTAAAA+TGG - chr1_2:24588438-24588457 None:intergenic 35.0%
ATACGGTCATGATACACTTA+AGG - chr1_2:24588517-24588536 None:intergenic 35.0%
! CATATCAAGTCTTATGATCC+TGG + chr1_2:24589071-24589090 Msa0063850:intron 35.0%
TAAAGCTAAAGATGCTTTCC+AGG - chr1_2:24589109-24589128 None:intergenic 35.0%
CTATCTTCTTGAAGATGTCA+AGG + chr1_2:24589148-24589167 Msa0063850:CDS 35.0%
!! ATGCTTAAAGAGCATTGTGA+TGG + chr1_2:24589351-24589370 Msa0063850:CDS 35.0%
!! AGGATAGTATTCACTGATTC+TGG - chr1_2:24589529-24589548 None:intergenic 35.0%
TCCTTTGTGATTGGATACAA+AGG + chr1_2:24589545-24589564 Msa0063850:CDS 35.0%
CCTTTGTGATTGGATACAAA+GGG + chr1_2:24589546-24589565 Msa0063850:CDS 35.0%
!! GCAGTGGACTAGTATATTAA+TGG - chr1_2:24589668-24589687 None:intergenic 35.0%
TTGAGAGATATGAATGGGAT+TGG + chr1_2:24590276-24590295 Msa0063850:intron 35.0%
TGAGAGATATGAATGGGATT+GGG + chr1_2:24590277-24590296 Msa0063850:intron 35.0%
ATGGCTTGAGACATAAGTTT+GGG + chr1_2:24590371-24590390 Msa0063850:intron 35.0%
! GGTTTGTAGATTTTACACTG+AGG + chr1_2:24590393-24590412 Msa0063850:intron 35.0%
ATTTGATGGAGAGTTCAAGT+GGG + chr1_2:24590495-24590514 Msa0063850:three_prime_UTR 35.0%
! GACTTAGCCACTATCATTTT+AGG + chr1_2:24590531-24590550 Msa0063850:three_prime_UTR 35.0%
!! TAATGTATTCATTGGTGGTG+TGG + chr1_2:24590717-24590736 Msa0063850:intron 35.0%
! TGGGTACAAATGTTTGGGTT+TGG - chr1_2:24584405-24584424 None:intergenic 40.0%
AGGGAGTAACACGAAGATAT+GGG - chr1_2:24584424-24584443 None:intergenic 40.0%
GAAAGTGAGGGAAAATTGGA+AGG - chr1_2:24584488-24584507 None:intergenic 40.0%
GTGTTTGAACCATACAATGG+CGG - chr1_2:24584570-24584589 None:intergenic 40.0%
! AGGGTTTTCTGATGAAATGC+TGG + chr1_2:24584756-24584775 Msa0063850:intron 40.0%
TTCTGATGAAATGCTGGAAC+TGG + chr1_2:24584762-24584781 Msa0063850:CDS 40.0%
TGTTCGCTGTTCAAGATTTG+AGG + chr1_2:24584788-24584807 Msa0063850:CDS 40.0%
GATTTGAGGAAGTCGTTGAA+AGG + chr1_2:24584802-24584821 Msa0063850:CDS 40.0%
! AAGCTATTATGGAGAGCATG+TGG + chr1_2:24585008-24585027 Msa0063850:intron 40.0%
TTCTCAGATAGTCTCACAAG+TGG + chr1_2:24585087-24585106 Msa0063850:intron 40.0%
AGATAGTCTCACAAGTGGTT+AGG + chr1_2:24585092-24585111 Msa0063850:intron 40.0%
CTCAACACATTGCAATCCAT+TGG + chr1_2:24585436-24585455 Msa0063850:intron 40.0%
CAACACATTGCAATCCATTG+GGG + chr1_2:24585438-24585457 Msa0063850:intron 40.0%
TTGTGTATTTGCGGAACAAG+AGG + chr1_2:24585570-24585589 Msa0063850:CDS 40.0%
GTATGAGCTCTGCTTTATCA+TGG + chr1_2:24585597-24585616 Msa0063850:CDS 40.0%
! CCTTGGTTGATTTCAAACGA+TGG - chr1_2:24585633-24585652 None:intergenic 40.0%
! CCATCGTTTGAAATCAACCA+AGG + chr1_2:24585630-24585649 Msa0063850:CDS 40.0%
AAATCAACCAAGGCTACACA+AGG + chr1_2:24585640-24585659 Msa0063850:CDS 40.0%
GACCCACCTGTATAATTTCA+AGG + chr1_2:24585946-24585965 Msa0063850:intron 40.0%
ATGTCAAACTTGTGTCATGG+TGG + chr1_2:24586022-24586041 Msa0063850:intron 40.0%
GGTAATGTTGAAAGCTGAAG+TGG - chr1_2:24586166-24586185 None:intergenic 40.0%
CTTCAGCTTTCAACATTACC+TGG + chr1_2:24586166-24586185 Msa0063850:CDS 40.0%
! TCTAGTTCCATTTCTGAACC+AGG - chr1_2:24586187-24586206 None:intergenic 40.0%
!! ACTAGATTGGGGTTAGTTTG+TGG + chr1_2:24586201-24586220 Msa0063850:intron 40.0%
ACATCAGCTGAAACCTTGTT+AGG + chr1_2:24586426-24586445 Msa0063850:CDS 40.0%
TGCTGAAATCTAGTGAGAAC+AGG + chr1_2:24586457-24586476 Msa0063850:CDS 40.0%
GCTGAAATCTAGTGAGAACA+GGG + chr1_2:24586458-24586477 Msa0063850:CDS 40.0%
AAAGGAAATGTTGTTGGAGG+TGG + chr1_2:24586546-24586565 Msa0063850:CDS 40.0%
!! ATGCATTGGCTGCATATTTG+AGG + chr1_2:24586586-24586605 Msa0063850:CDS 40.0%
! GGCTGCATATTTGAGGTATT+TGG + chr1_2:24586593-24586612 Msa0063850:CDS 40.0%
! TTTGAGGTATTTGGAGGGAA+CGG + chr1_2:24586602-24586621 Msa0063850:CDS 40.0%
!!! AGTTTTGTTTACCTCGAACG+GGG + chr1_2:24586881-24586900 Msa0063850:intron 40.0%
GCTTTGCCTTAAATTTGTGC+AGG + chr1_2:24587049-24587068 Msa0063850:intron 40.0%
GTGTACCCTGCACAAATTTA+AGG - chr1_2:24587058-24587077 None:intergenic 40.0%
TGATGGAAAACAGTCAACAC+GGG + chr1_2:24587480-24587499 Msa0063850:CDS 40.0%
! CTGGAATGGTTTTCTTGTTC+AGG + chr1_2:24587510-24587529 Msa0063850:CDS 40.0%
! GGGTCCCACATAAATTTGTT+GGG - chr1_2:24587653-24587672 None:intergenic 40.0%
TGGGTCCCACATAAATTTGT+TGG - chr1_2:24587654-24587673 None:intergenic 40.0%
ATGGGTCCACTAAATCATGT+TGG - chr1_2:24587686-24587705 None:intergenic 40.0%
TATACAATTGCCGGTGAAGA+TGG + chr1_2:24587786-24587805 Msa0063850:CDS 40.0%
!!! GTACATGGTTTTGGTGCATT+TGG + chr1_2:24587825-24587844 Msa0063850:CDS 40.0%
!!! ACATGGTTTTGGTGCATTTG+GGG + chr1_2:24587827-24587846 Msa0063850:CDS 40.0%
CATTACCGTGACAACATACA+CGG + chr1_2:24587852-24587871 Msa0063850:CDS 40.0%
TAGAGCTGGAAATCGAGTTT+GGG + chr1_2:24587881-24587900 Msa0063850:CDS 40.0%
TCACAAACATGCAGTGACTT+TGG + chr1_2:24588096-24588115 Msa0063850:intron 40.0%
! TTGCTATTGTTGCTCGAGTT+TGG + chr1_2:24588207-24588226 Msa0063850:CDS 40.0%
CTTACACTTGGCTTAGACAA+TGG - chr1_2:24588302-24588321 None:intergenic 40.0%
! ATCGACAGTGCTTGATTTTG+TGG + chr1_2:24588893-24588912 Msa0063850:intron 40.0%
TGCTTTGCAGAAGATCGAAA+GGG + chr1_2:24588921-24588940 Msa0063850:intron 40.0%
TGATTCTGGCACTTCATCAT+GGG - chr1_2:24589515-24589534 None:intergenic 40.0%
CCCTTTGTATCCAATCACAA+AGG - chr1_2:24589549-24589568 None:intergenic 40.0%
TCTGTCTTTCCGTTAAAGTG+AGG - chr1_2:24589892-24589911 None:intergenic 40.0%
!! TATGAATGGGATTGGGTTGA+TGG + chr1_2:24590284-24590303 Msa0063850:intron 40.0%
!! TTGGGTTGATGGTACATATG+AGG + chr1_2:24590295-24590314 Msa0063850:intron 40.0%
!! TGGGTTGATGGTACATATGA+GGG + chr1_2:24590296-24590315 Msa0063850:intron 40.0%
AAGTAGACTCAAGGTCAGTA+TGG + chr1_2:24590346-24590365 Msa0063850:intron 40.0%
GATGGCTTGAGACATAAGTT+TGG + chr1_2:24590370-24590389 Msa0063850:intron 40.0%
TGGCTTGAGACATAAGTTTG+GGG + chr1_2:24590372-24590391 Msa0063850:intron 40.0%
TACACTGAGGATGTTTATGC+TGG + chr1_2:24590406-24590425 Msa0063850:intron 40.0%
AGGATGTTTATGCTGGTGAA+TGG + chr1_2:24590413-24590432 Msa0063850:intron 40.0%
GATTTGATGGAGAGTTCAAG+TGG + chr1_2:24590494-24590513 Msa0063850:three_prime_UTR 40.0%
TTTGATGGAGAGTTCAAGTG+GGG + chr1_2:24590496-24590515 Msa0063850:three_prime_UTR 40.0%
GGAAGAGGGACCAATAAAAA+AGG + chr1_2:24590746-24590765 Msa0063850:intron 40.0%
GAGGGAGTAACACGAAGATA+TGG - chr1_2:24584425-24584444 None:intergenic 45.0%
AAGGAAAATGCGGGAAAGTG+AGG - chr1_2:24584469-24584488 None:intergenic 45.0%
GTGGAAAGAAGCGGTTGTTA+GGG - chr1_2:24584517-24584536 None:intergenic 45.0%
GAAAATTGGAAGCTGCAGTG+AGG - chr1_2:24584622-24584641 None:intergenic 45.0%
GAAAGGCGGTAGTAGTTTCT+TGG + chr1_2:24585394-24585413 Msa0063850:intron 45.0%
TCAATTCATCGGTCTCAGGA+TGG + chr1_2:24585531-24585550 Msa0063850:intron 45.0%
TGTATTTGCGGAACAAGAGG+TGG + chr1_2:24585573-24585592 Msa0063850:CDS 45.0%
GCACTCCAAGGATTGAAGTA+TGG + chr1_2:24585662-24585681 Msa0063850:CDS 45.0%
TCAAACTTGTGTCATGGTGG+TGG + chr1_2:24586025-24586044 Msa0063850:intron 45.0%
!! GATTGGGGTTAGTTTGTGGA+TGG + chr1_2:24586205-24586224 Msa0063850:intron 45.0%
CAGCATTTCTCTGCCTAACA+AGG - chr1_2:24586442-24586461 None:intergenic 45.0%
CGTGCTTCAGAAAGTCGAAA+TGG + chr1_2:24587087-24587106 Msa0063850:CDS 45.0%
ATAATTCCCAAAGACAGCGC+AGG - chr1_2:24587138-24587157 None:intergenic 45.0%
GTGGCAGCTGAATATCCAAA+GGG - chr1_2:24587228-24587247 None:intergenic 45.0%
!! TTTTGGTTGGCTAGTGGTAC+TGG + chr1_2:24587428-24587447 Msa0063850:intron 45.0%
GAAAACAGTCAACACGGGTA+TGG + chr1_2:24587485-24587504 Msa0063850:CDS 45.0%
CCATGTACAAGAAGAACAGC+AGG - chr1_2:24587813-24587832 None:intergenic 45.0%
CCTGCTGTTCTTCTTGTACA+TGG + chr1_2:24587810-24587829 Msa0063850:CDS 45.0%
CCAAACCGTGTATGTTGTCA+CGG - chr1_2:24587860-24587879 None:intergenic 45.0%
CTAGAGCTGGAAATCGAGTT+TGG + chr1_2:24587880-24587899 Msa0063850:CDS 45.0%
! CAATTGAGTTGCCAACAAGG+TGG - chr1_2:24588019-24588038 None:intergenic 45.0%
CACCTTGTTGGCAACTCAAT+TGG + chr1_2:24588017-24588036 Msa0063850:CDS 45.0%
! CACCAATTGAGTTGCCAACA+AGG - chr1_2:24588022-24588041 None:intergenic 45.0%
CTTGTTGGCAACTCAATTGG+TGG + chr1_2:24588020-24588039 Msa0063850:CDS 45.0%
AGCTGGTGAGAAAATTGTGC+TGG - chr1_2:24588124-24588143 None:intergenic 45.0%
! CGTCAGTTGTCACTTACACT+TGG - chr1_2:24588314-24588333 None:intergenic 45.0%
GACAAACGTCAGTGACTTCA+TGG + chr1_2:24588752-24588771 Msa0063850:CDS 45.0%
AACGTCAGTGACTTCATGGT+TGG + chr1_2:24588756-24588775 Msa0063850:CDS 45.0%
ACGTCAGTGACTTCATGGTT+GGG + chr1_2:24588757-24588776 Msa0063850:CDS 45.0%
GTGCTTTGCAGAAGATCGAA+AGG + chr1_2:24588920-24588939 Msa0063850:intron 45.0%
AGATCGAAAGGGCAGATGAT+TGG + chr1_2:24588932-24588951 Msa0063850:CDS 45.0%
! GTGGCATTGGAGTCAGAAAT+TGG - chr1_2:24589324-24589343 None:intergenic 45.0%
CTCTTTAAGCATAGCCACTG+TGG - chr1_2:24589343-24589362 None:intergenic 45.0%
GATTCTGGCACTTCATCATG+GGG - chr1_2:24589514-24589533 None:intergenic 45.0%
CTGATTCTGGCACTTCATCA+TGG - chr1_2:24589516-24589535 None:intergenic 45.0%
! CTGTAAAGAAGGCATAGCAG+TGG - chr1_2:24589684-24589703 None:intergenic 45.0%
TGAAAACAGGACATGGTACC+TGG + chr1_2:24589744-24589763 Msa0063850:three_prime_UTR 45.0%
GAAAACAGGACATGGTACCT+GGG + chr1_2:24589745-24589764 Msa0063850:three_prime_UTR 45.0%
!! GTTAAAGTGAGGTTCTGAGG+GGG - chr1_2:24589881-24589900 None:intergenic 45.0%
!! CGTTAAAGTGAGGTTCTGAG+GGG - chr1_2:24589882-24589901 None:intergenic 45.0%
! CCGTTAAAGTGAGGTTCTGA+GGG - chr1_2:24589883-24589902 None:intergenic 45.0%
CCCTCAGAACCTCACTTTAA+CGG + chr1_2:24589880-24589899 Msa0063850:intron 45.0%
TCCGTTAAAGTGAGGTTCTG+AGG - chr1_2:24589884-24589903 None:intergenic 45.0%
!! GGGTTGATGGTACATATGAG+GGG + chr1_2:24590297-24590316 Msa0063850:intron 45.0%
ACTCAAGGTCAGTATGGAGA+TGG + chr1_2:24590352-24590371 Msa0063850:intron 45.0%
ACAGAGTCGTAGTTCACTTC+TGG + chr1_2:24590444-24590463 Msa0063850:intron 45.0%
TCAAGTGGGGATGTTAAGCA+TGG + chr1_2:24590509-24590528 Msa0063850:three_prime_UTR 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG - chr1_2:24590614-24590633 None:intergenic 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG - chr1_2:24590615-24590634 None:intergenic 45.0%
!! TCATTGGTGGTGTGGTGTTT+AGG + chr1_2:24590725-24590744 Msa0063850:intron 45.0%
TGGTGTGGTGTTTAGGAAGA+GGG + chr1_2:24590732-24590751 Msa0063850:intron 45.0%
!!! TTTTTTATTTAATGAATTAT+TGG - chr1_2:24585834-24585853 None:intergenic 5.0%
!! TAAAATAAAAAATAATAGAA+CGG - chr1_2:24589423-24589442 None:intergenic 5.0%
AGGAGAGTCGTCATGGATAG+CGG - chr1_2:24584449-24584468 None:intergenic 50.0%
GAAAGTGAGGAGAGTCGTCA+TGG - chr1_2:24584456-24584475 None:intergenic 50.0%
GCGGGAAAGTGAGGGAAAAT+TGG - chr1_2:24584492-24584511 None:intergenic 50.0%
TTAGGGAAGCGGGAAAGTGA+GGG - chr1_2:24584500-24584519 None:intergenic 50.0%
AGAAGCGGTTGTTAGGGAAG+CGG - chr1_2:24584511-24584530 None:intergenic 50.0%
GGTGGAAAGAAGCGGTTGTT+AGG - chr1_2:24584518-24584537 None:intergenic 50.0%
! TACAATGGCGGTGTCAGTTG+CGG - chr1_2:24584558-24584577 None:intergenic 50.0%
CAACTGACACCGCCATTGTA+TGG + chr1_2:24584558-24584577 Msa0063850:CDS 50.0%
! TGGTGTTTTGCTTGCTCTGC+AGG + chr1_2:24584736-24584755 Msa0063850:intron 50.0%
! GGTGTTTTGCTTGCTCTGCA+GGG + chr1_2:24584737-24584756 Msa0063850:intron 50.0%
AGGAAGTCGTTGAAAGGTCG+TGG + chr1_2:24584808-24584827 Msa0063850:CDS 50.0%
!! GATACACCAGCTTGCTACTC+AGG + chr1_2:24584870-24584889 Msa0063850:CDS 50.0%
CAAGTACCTGAGTAGCAAGC+TGG - chr1_2:24584879-24584898 None:intergenic 50.0%
!! CAGCTTGCTACTCAGGTACT+TGG + chr1_2:24584877-24584896 Msa0063850:intron 50.0%
ACCTTAGACCGTCGTTGAGA+AGG + chr1_2:24585372-24585391 Msa0063850:intron 50.0%
TCCTTCTCAACGACGGTCTA+AGG - chr1_2:24585376-24585395 None:intergenic 50.0%
AGACCGTCGTTGAGAAGGAA+AGG + chr1_2:24585377-24585396 Msa0063850:intron 50.0%
! CACACAGGTGCTGCAAAATC+TGG + chr1_2:24586093-24586112 Msa0063850:intron 50.0%
GCTGAAGTGGTGTAGTCACA+TGG - chr1_2:24586153-24586172 None:intergenic 50.0%
TACAAACATAGCCCCGTTCG+AGG - chr1_2:24586895-24586914 None:intergenic 50.0%
ATTTGGTCCTGCGCTGTCTT+TGG + chr1_2:24587128-24587147 Msa0063850:CDS 50.0%
TTTGGTCCTGCGCTGTCTTT+GGG + chr1_2:24587129-24587148 Msa0063850:CDS 50.0%
GCAGGGTTCTTATCTCCCTT+TGG + chr1_2:24587210-24587229 Msa0063850:CDS 50.0%
GGTGGCAGCTGAATATCCAA+AGG - chr1_2:24587229-24587248 None:intergenic 50.0%
AGTTGAGGCTGTGTGTTCGA+AGG + chr1_2:24587260-24587279 Msa0063850:CDS 50.0%
!!! TGGCTAGTGGTACTGGCTTT+TGG + chr1_2:24587435-24587454 Msa0063850:intron 50.0%
AACAGCAGGACCATCTTCAC+CGG - chr1_2:24587799-24587818 None:intergenic 50.0%
CCGTGACAACATACACGGTT+TGG + chr1_2:24587857-24587876 Msa0063850:CDS 50.0%
! ATACACGGTTTGGCTAGAGC+TGG + chr1_2:24587867-24587886 Msa0063850:CDS 50.0%
TGTTGATGTTGTGGGGGAAC+CGG + chr1_2:24587992-24588011 Msa0063850:CDS 50.0%
CAACAGAAGCAGGAACAAGC+TGG - chr1_2:24588141-24588160 None:intergenic 50.0%
CAGACAGGCAGCAAAAGAAG+AGG - chr1_2:24588373-24588392 None:intergenic 50.0%
TTATGATCCTGGTGTGCCTG+TGG + chr1_2:24589082-24589101 Msa0063850:CDS 50.0%
AAGATGCTTTCCAGGACCAC+AGG - chr1_2:24589101-24589120 None:intergenic 50.0%
TTCTGACTCCAATGCCACAG+TGG + chr1_2:24589326-24589345 Msa0063850:CDS 50.0%
AAGCATAGCCACTGTGGCAT+TGG - chr1_2:24589337-24589356 None:intergenic 50.0%
AGCACAATATGCACAAGCCC+AGG - chr1_2:24589765-24589784 None:intergenic 50.0%
AGGGGTTTCGTGTTGAGACT+TGG + chr1_2:24590315-24590334 Msa0063850:intron 50.0%
! TCGTGTTGAGACTTGGTCCA+AGG + chr1_2:24590322-24590341 Msa0063850:intron 50.0%
! CGTGTTGAGACTTGGTCCAA+GGG + chr1_2:24590323-24590342 Msa0063850:intron 50.0%
GTCCAAGGGAAGTAGACTCA+AGG + chr1_2:24590337-24590356 Msa0063850:intron 50.0%
GACCTTGAGTCTACTTCCCT+TGG - chr1_2:24590342-24590361 None:intergenic 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG - chr1_2:24590610-24590629 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr1_2:24590616-24590635 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr1_2:24590613-24590632 Msa0063850:intron 50.0%
GTGGTGTGGTGTTTAGGAAG+AGG + chr1_2:24590731-24590750 Msa0063850:intron 50.0%
! GTCGTCATGGATAGCGGTGA+GGG - chr1_2:24584443-24584462 None:intergenic 55.0%
! AGTCGTCATGGATAGCGGTG+AGG - chr1_2:24584444-24584463 None:intergenic 55.0%
GTTAGGGAAGCGGGAAAGTG+AGG - chr1_2:24584501-24584520 None:intergenic 55.0%
GAAGCGGTTGTTAGGGAAGC+GGG - chr1_2:24584510-24584529 None:intergenic 55.0%
TTCTTTCCACCTCGCCGTCT+CGG + chr1_2:24584527-24584546 Msa0063850:CDS 55.0%
CAGTTGCGGTTGAACCGAGA+CGG - chr1_2:24584544-24584563 None:intergenic 55.0%
GTCCAGGGTGATCGTCTGTT+CGG - chr1_2:24584598-24584617 None:intergenic 55.0%
AAGCTGCAGTGAGGAGTCCA+GGG - chr1_2:24584613-24584632 None:intergenic 55.0%
CCGCCTTTCCTTCTCAACGA+CGG - chr1_2:24585383-24585402 None:intergenic 55.0%
CCGTCGTTGAGAAGGAAAGG+CGG + chr1_2:24585380-24585399 Msa0063850:intron 55.0%
TTGCAATCCATTGGGGCGTG+AGG + chr1_2:24585445-24585464 Msa0063850:intron 55.0%
TGCAATCCATTGGGGCGTGA+GGG + chr1_2:24585446-24585465 Msa0063850:intron 55.0%
CATCGGTCTCAGGATGGAAC+AGG + chr1_2:24585537-24585556 Msa0063850:intron 55.0%
! TGGAGTGCCTTGTGTAGCCT+TGG - chr1_2:24585650-24585669 None:intergenic 55.0%
! AGGCTACACAAGGCACTCCA+AGG + chr1_2:24585650-24585669 Msa0063850:CDS 55.0%
AGGGAACGGCTCGTGATGAT+TGG + chr1_2:24586616-24586635 Msa0063850:CDS 55.0%
CTCAACTGCTGCTGCAATGG+TGG - chr1_2:24587247-24587266 None:intergenic 55.0%
CACCATTGCAGCAGCAGTTG+AGG + chr1_2:24587245-24587264 Msa0063850:CDS 55.0%
AGCCTCAACTGCTGCTGCAA+TGG - chr1_2:24587250-24587269 None:intergenic 55.0%
TGAGGCTGTGTGTTCGAAGG+AGG + chr1_2:24587263-24587282 Msa0063850:CDS 55.0%
AGTCAACACGGGTATGGAGC+TGG + chr1_2:24587491-24587510 Msa0063850:CDS 55.0%
ACACGGGTATGGAGCTGGAA+TGG + chr1_2:24587496-24587515 Msa0063850:CDS 55.0%
GAGTTGCCAACAAGGTGGAC+CGG - chr1_2:24588014-24588033 None:intergenic 55.0%
GCACTTCATCATGGGGACAG+TGG - chr1_2:24589507-24589526 None:intergenic 55.0%
CGACCCCACTTAGTGGGAAA+AGG + chr1_2:24590608-24590627 Msa0063850:intron 55.0%
GACGGCGAGGTGGAAAGAAG+CGG - chr1_2:24584526-24584545 None:intergenic 60.0%
CTCCGAACAGACGATCACCC+TGG + chr1_2:24584593-24584612 Msa0063850:CDS 60.0%
GAAGCTGCAGTGAGGAGTCC+AGG - chr1_2:24584614-24584633 None:intergenic 60.0%
GACTGCCGACCCCACTTAGT+GGG + chr1_2:24590602-24590621 Msa0063850:intron 60.0%
GTTGAACCGAGACGGCGAGG+TGG - chr1_2:24584536-24584555 None:intergenic 65.0%
CTCTCACCCTCACGCCCCAA+TGG - chr1_2:24585455-24585474 None:intergenic 65.0%
CATTGGGGCGTGAGGGTGAG+AGG + chr1_2:24585453-24585472 Msa0063850:intron 65.0%
GGGGAACCGGTCCACCTTGT+TGG + chr1_2:24588005-24588024 Msa0063850:CDS 65.0%
TCCTGGTGTGCCTGTGGTCC+TGG + chr1_2:24589088-24589107 Msa0063850:CDS 65.0%
TCCAGGACCACAGGCACACC+AGG - chr1_2:24589092-24589111 None:intergenic 65.0%
GGACTGCCGACCCCACTTAG+TGG + chr1_2:24590601-24590620 Msa0063850:intron 65.0%
GCGGTTGAACCGAGACGGCG+AGG - chr1_2:24584539-24584558 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 24584395 24590804 24584395 ID=Msa0063850;Name=Msa0063850
chr1_2 mRNA 24584395 24590804 24584395 ID=Msa0063850-mRNA-1;Parent=Msa0063850;Name=Msa0063850-mRNA-1;_AED=0.20;_eAED=0.20;_QI=60|1|1|1|0.76|0.72|18|376|686
chr1_2 exon 24584395 24584686 24584395 ID=Msa0063850-mRNA-1:exon:8802;Parent=Msa0063850-mRNA-1
chr1_2 exon 24584758 24584891 24584758 ID=Msa0063850-mRNA-1:exon:8803;Parent=Msa0063850-mRNA-1
chr1_2 exon 24585559 24585708 24585559 ID=Msa0063850-mRNA-1:exon:8804;Parent=Msa0063850-mRNA-1
chr1_2 exon 24586100 24586211 24586100 ID=Msa0063850-mRNA-1:exon:8805;Parent=Msa0063850-mRNA-1
chr1_2 exon 24586340 24586643 24586340 ID=Msa0063850-mRNA-1:exon:8806;Parent=Msa0063850-mRNA-1
chr1_2 exon 24587071 24587284 24587071 ID=Msa0063850-mRNA-1:exon:8807;Parent=Msa0063850-mRNA-1
chr1_2 exon 24587442 24587531 24587442 ID=Msa0063850-mRNA-1:exon:8808;Parent=Msa0063850-mRNA-1
chr1_2 exon 24587786 24588041 24587786 ID=Msa0063850-mRNA-1:exon:8809;Parent=Msa0063850-mRNA-1
chr1_2 exon 24588198 24588316 24588198 ID=Msa0063850-mRNA-1:exon:8810;Parent=Msa0063850-mRNA-1
chr1_2 exon 24588748 24588846 24588748 ID=Msa0063850-mRNA-1:exon:8811;Parent=Msa0063850-mRNA-1
chr1_2 exon 24588931 24588978 24588931 ID=Msa0063850-mRNA-1:exon:8812;Parent=Msa0063850-mRNA-1
chr1_2 exon 24589080 24589190 24589080 ID=Msa0063850-mRNA-1:exon:8813;Parent=Msa0063850-mRNA-1
chr1_2 exon 24589309 24589399 24589309 ID=Msa0063850-mRNA-1:exon:8814;Parent=Msa0063850-mRNA-1
chr1_2 exon 24589503 24589648 24589503 ID=Msa0063850-mRNA-1:exon:8815;Parent=Msa0063850-mRNA-1
chr1_2 exon 24589669 24589821 24589669 ID=Msa0063850-mRNA-1:exon:8816;Parent=Msa0063850-mRNA-1
chr1_2 exon 24590493 24590601 24590493 ID=Msa0063850-mRNA-1:exon:8817;Parent=Msa0063850-mRNA-1
chr1_2 exon 24590658 24590689 24590658 ID=Msa0063850-mRNA-1:exon:8818;Parent=Msa0063850-mRNA-1
chr1_2 exon 24590768 24590804 24590768 ID=Msa0063850-mRNA-1:exon:8819;Parent=Msa0063850-mRNA-1
chr1_2 five_prime_UTR 24584395 24584454 24584395 ID=Msa0063850-mRNA-1:five_prime_utr;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24584455 24584686 24584455 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24584758 24584891 24584758 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24585559 24585708 24585559 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24586100 24586211 24586100 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24586340 24586643 24586340 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24587071 24587284 24587071 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24587442 24587531 24587442 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24587786 24588041 24587786 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24588198 24588316 24588198 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24588748 24588846 24588748 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24588931 24588978 24588931 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24589080 24589190 24589080 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24589309 24589399 24589309 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 CDS 24589503 24589603 24589503 ID=Msa0063850-mRNA-1:cds;Parent=Msa0063850-mRNA-1
chr1_2 three_prime_UTR 24589604 24589648 24589604 ID=Msa0063850-mRNA-1:three_prime_utr;Parent=Msa0063850-mRNA-1
chr1_2 three_prime_UTR 24589669 24589821 24589669 ID=Msa0063850-mRNA-1:three_prime_utr;Parent=Msa0063850-mRNA-1
chr1_2 three_prime_UTR 24590493 24590601 24590493 ID=Msa0063850-mRNA-1:three_prime_utr;Parent=Msa0063850-mRNA-1
chr1_2 three_prime_UTR 24590658 24590689 24590658 ID=Msa0063850-mRNA-1:three_prime_utr;Parent=Msa0063850-mRNA-1
chr1_2 three_prime_UTR 24590768 24590804 24590768 ID=Msa0063850-mRNA-1:three_prime_utr;Parent=Msa0063850-mRNA-1
Gene Sequence

>Msa0063850

ATGACGACTCTCCTCACTTTCCCGCATTTTCCTTCCAATTTTCCCTCACTTTCCCGCTTCCCTAACAACCGCTTCTTTCCACCTCGCCGTCTCGGTTCAACCGCAACTGACACCGCCATTGTATGGTTCAAACACGATCTCCGAACAGACGATCACCCTGGACTCCTCACTGCAGCTTCCAATTTTCAATCCCTAGTTCCAATTTATGTATTCGATCACCGCATTCTTTCGAGGTTTTCTGATGAAATGCTGGAACTGGTTTTGTTCGCTGTTCAAGATTTGAGGAAGTCGTTGAAAGGTCGTGGTTCTAATCTCATGATTAAGTTTGGTAATGCTGAGAATGTGATACACCAGCTTGCTACTCAGGTCAAAGCTACTTGTGTATTTGCGGAACAAGAGGTGGAGTATGAGCTCTGCTTTATCATGGATGTTGTCAACCATCGTTTGAAATCAACCAAGGCTACACAAGGCACTCCAAGGATTGAAGTATGGAAAACTCCATTATATGATGAAAATGTGCTGCAAAATCTGGCTGCATCATATGATGACTTTGAGAAACTACGGCTCCATGTGACTACACCACTTCAGCTTTCAACATTACCTGGTTCAGAAATGGAACTAGATTGGGGTGATATTCCTGTTTATGATGATATGATGGGATTTATGGCTAAGAACCGACATAAATCAAGAGATGACTGGAATTTGATCAAGGAGACATCAGCTGAAACCTTGTTAGGCAGAGAAATGCTGAAATCTAGTGAGAACAGGGAGAGAAGTTATAGCTTTAGACAGATTCAGTCAAGTGAACCAAATGAATCTGTGTTTGTTACACAAAAAGGAAATGTTGTTGGAGGTGGAACATTTAATGTACTAAATGCATTGGCTGCATATTTGAGGTATTTGGAGGGAACGGCTCGTGATGATTGGCAAGAGGTACACGAAAAACTTCGTGCTTCAGAAAGTCGAAATGGAGCATCATTTATTGCACTATTTGGTCCTGCGCTGTCTTTGGGAATTATATCTAGAAGAAGAGTACACTATGAAGCTATCAAATATGAGAAAGAACGAAATGCAGGGTTCTTATCTCCCTTTGGATATTCAGCTGCCACCATTGCAGCAGCAGTTGAGGCTGTGTGTTCGAAGGAGTGGTACTGGCTTTTGGCTTTGAGAAATCAGATAAATAATGATGGAAAACAGTCAACACGGGTATGGAGCTGGAATGGTTTTCTTGTTCAGTATACAATTGCCGGTGAAGATGGTCCTGCTGTTCTTCTTGTACATGGTTTTGGTGCATTTGGGGAGCATTACCGTGACAACATACACGGTTTGGCTAGAGCTGGAAATCGAGTTTGGGCTATTACATTGTTAGGGTTTGGCAAATCAGAAAAGCCAAATATTGTATATACTGAGCTCTTGTGGGCTGAACTATTGAGAGACTTTATTGTTGATGTTGTGGGGGAACCGGTCCACCTTGTTGGCAACTCAATTGGTGGTTACATTGTTGCTATTGTTGCTCGAGTTTGGAGCGTTCTGATCAAATCCATTGTCTTGATAAACAGTGCTGGGAATGTTATCTCGAGAAATTCATCAACACCATTGTCTAAGCCAAGTGATAGACAAACGTCAGTGACTTCATGGTTGGGTTCTCGAATTCTTTTGTTTTACTTGAGGCTAAGAATTCAAGACATTGTTAAGAAATGTTATCCAACAAAGATCGAAAGGGCAGATGATTGGCTCATAAATGAAATGCTAAGAGCTTCTTATGATCCTGGTGTGCCTGTGGTCCTGGAAAGCATCTTTAGCTTTAATCTTTCCATACCTCTTAACTATCTTCTTGAAGATGTCAAGGAAAAGATTCTAATTATACAGGGAATGAAAGATCCAATTTCTGACTCCAATGCCACAGTGGCTATGCTTAAAGAGCATTGTGATGGTGTTATAATTAAGGAATTAGATGCTGGCCACTGTCCCCATGATGAAGTGCCAGAATCAGTGAATACTATCCTTTGTGATTGGATACAAAGGGTTGAAAGTAACATTTTAGCAGGGTTCCAAGTATAA
Protein sequence

>Msa0063850

MTTLLTFPHFPSNFPSLSRFPNNRFFPPRRLGSTATDTAIVWFKHDLRTDDHPGLLTAASNFQSLVPIYVFDHRILSRFSDEMLELVLFAVQDLRKSLKGRGSNLMIKFGNAENVIHQLATQVKATCVFAEQEVEYELCFIMDVVNHRLKSTKATQGTPRIEVWKTPLYDENVLQNLAASYDDFEKLRLHVTTPLQLSTLPGSEMELDWGDIPVYDDMMGFMAKNRHKSRDDWNLIKETSAETLLGREMLKSSENRERSYSFRQIQSSEPNESVFVTQKGNVVGGGTFNVLNALAAYLRYLEGTARDDWQEVHEKLRASESRNGASFIALFGPALSLGIISRRRVHYEAIKYEKERNAGFLSPFGYSAATIAAAVEAVCSKEWYWLLALRNQINNDGKQSTRVWSWNGFLVQYTIAGEDGPAVLLVHGFGAFGEHYRDNIHGLARAGNRVWAITLLGFGKSEKPNIVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYIVAIVARVWSVLIKSIVLINSAGNVISRNSSTPLSKPSDRQTSVTSWLGSRILLFYLRLRIQDIVKKCYPTKIERADDWLINEMLRASYDPGVPVVLESIFSFNLSIPLNYLLEDVKEKILIIQGMKDPISDSNATVAMLKEHCDGVIIKELDAGHCPHDEVPESVNTILCDWIQRVESNILAGFQV*