Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541220 | ACJ86307.1 | 94.676 | 432 | 21 | 1 | 1 | 430 | 1 | 432 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541220 | sp|Q8CWK7|DUSA_VIBVU | 43.072 | 332 | 170 | 8 | 67 | 393 | 7 | 324 | 8.71e-86 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541220 | B7FNH4 | 94.676 | 432 | 21 | 1 | 1 | 430 | 1 | 432 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008250 | Msa0541220 | 0.803481 | 3.415766e-49 | -8.615850e-47 |
| Msa0025690 | Msa0541220 | 0.803779 | 2.961832e-49 | -8.615850e-47 |
| Msa0066850 | Msa0541220 | 0.803301 | 3.722222e-49 | -8.615850e-47 |
| Msa0071010 | Msa0541220 | 0.807114 | 5.919847e-50 | -8.615850e-47 |
| Msa0091340 | Msa0541220 | 0.831899 | 1.285176e-55 | -8.615850e-47 |
| Msa0094990 | Msa0541220 | 0.806274 | 8.905739e-50 | -8.615850e-47 |
| Msa0127060 | Msa0541220 | 0.801496 | 8.762003e-49 | -8.615850e-47 |
| Msa0438440 | Msa0541220 | 0.824748 | 6.823273e-54 | -8.615850e-47 |
| Msa0241580 | Msa0541220 | 0.800468 | 1.420889e-48 | -8.615850e-47 |
| Msa0315010 | Msa0541220 | 0.834249 | 3.342859e-56 | -8.615850e-47 |
| Msa0495510 | Msa0541220 | 0.815433 | 9.268819e-52 | -8.615850e-47 |
| Msa0528830 | Msa0541220 | 0.801746 | 7.783969e-49 | -8.615850e-47 |
| Msa0533140 | Msa0541220 | 0.814920 | 1.205023e-51 | -8.615850e-47 |
| Msa0540160 | Msa0541220 | 0.831216 | 1.892473e-55 | -8.615850e-47 |
| Msa0541220 | Msa0565150 | 0.828660 | 7.947152e-55 | -8.615850e-47 |
| Msa0541220 | Msa0625440 | 0.805025 | 1.629224e-49 | -8.615850e-47 |
| Msa0541220 | Msa0675790 | 0.818738 | 1.675522e-52 | -8.615850e-47 |
| Msa0541220 | Msa0964150 | 0.804471 | 2.125710e-49 | -8.615850e-47 |
| Msa0541220 | Msa0976280 | 0.811660 | 6.264250e-51 | -8.615850e-47 |
| Msa0541220 | Msa1072640 | 0.806626 | 7.508448e-50 | -8.615850e-47 |
| Msa0541220 | Msa1076030 | 0.813020 | 3.162094e-51 | -8.615850e-47 |
| Msa0541220 | Msa1116850 | 0.826712 | 2.333710e-54 | -8.615850e-47 |
| Msa0541220 | Msa1145930 | 0.816491 | 5.380160e-52 | -8.615850e-47 |
| Msa0541220 | Msa1181730 | 0.814909 | 1.211408e-51 | -8.615850e-47 |
| Msa0541220 | Msa1184900 | 0.800244 | 1.578552e-48 | -8.615850e-47 |
| Msa0541220 | Msa1199750 | 0.800272 | 1.558155e-48 | -8.615850e-47 |
| Msa0541220 | Msa1326800 | 0.801103 | 1.054248e-48 | -8.615850e-47 |
| Msa0541220 | Msa1327690 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0541220 | Msa1328600 | 0.809060 | 2.280213e-50 | -8.615850e-47 |
| Msa0541220 | Msa1371060 | 0.800788 | 1.222850e-48 | -8.615850e-47 |
| Msa0541220 | Msa1378840 | 0.816905 | 4.345942e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541220 | MtrunA17_Chr4g0019301 | 94.907 | 432 | 20 | 1 | 1 | 430 | 1 | 432 | 0.0 | 857 |
| Msa0541220 | MtrunA17_Chr3g0089171 | 80.769 | 364 | 70 | 0 | 62 | 425 | 6 | 369 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541220 | AT3G63510.1 | 74.124 | 371 | 94 | 2 | 62 | 430 | 49 | 419 | 0.0 | 589 |
| Msa0541220 | AT5G47970.1 | 71.781 | 365 | 102 | 1 | 58 | 421 | 3 | 367 | 0.0 | 568 |
| Msa0541220 | AT5G47970.2 | 71.781 | 365 | 102 | 1 | 58 | 421 | 3 | 367 | 0.0 | 568 |
| Msa0541220 | AT3G63510.2 | 73.109 | 357 | 94 | 2 | 76 | 430 | 30 | 386 | 0.0 | 559 |
| Msa0541220 | AT5G47970.3 | 76.580 | 269 | 63 | 0 | 58 | 326 | 3 | 271 | 4.11e-159 | 450 |
| Msa0541220 | AT5G67220.1 | 24.627 | 268 | 167 | 12 | 42 | 299 | 66 | 308 | 9.90e-13 | 70.1 |
Find 107 sgRNAs with CRISPR-Local
Find 441 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGTCTTAATTGCAATTT+TGG | 0.130611 | 4_1:+24771287 | Msa0541220:three_prime_UTR |
| ACCCATGATGCTTTGTTAAA+AGG | 0.147695 | 4_1:+24764659 | Msa0541220:five_prime_UTR |
| GATTTAACGTTTACAATAAA+TGG | 0.162079 | 4_1:+24768553 | Msa0541220:CDS |
| CTGATGAAATTTGAAGTTAA+AGG | 0.171613 | 4_1:-24764729 | None:intergenic |
| GCATGAAATGTGTTTAAATT+TGG | 0.178183 | 4_1:-24764553 | None:intergenic |
| CATCCCATTGTGCTTCAAAT+TGG | 0.244974 | 4_1:+24766645 | Msa0541220:CDS |
| GACTCGGAGTTGGGAAAATA+TGG | 0.271444 | 4_1:+24769279 | Msa0541220:CDS |
| TCATGTAAGGAAAAGGAAAA+AGG | 0.275827 | 4_1:+24771241 | Msa0541220:intron |
| CCAAGAGGTGGTTCCGAAAT+AGG | 0.284480 | 4_1:-24770889 | None:intergenic |
| AATATCTACCTCCTTGGTTT+AGG | 0.295450 | 4_1:+24764871 | Msa0541220:CDS |
| TTTATTGTAAACGTTAAATC+TGG | 0.301875 | 4_1:-24768550 | None:intergenic |
| AATCTGGAAAGTCACGTAAA+AGG | 0.320796 | 4_1:-24768534 | None:intergenic |
| TGTCTCAGGGATAACGATTC+AGG | 0.324452 | 4_1:+24764578 | Msa0541220:five_prime_UTR |
| TTCTGCTCAGGATAGATTCT+TGG | 0.329849 | 4_1:+24766605 | Msa0541220:intron |
| CACATTTCATGCTTTGTCTC+AGG | 0.331154 | 4_1:+24764564 | Msa0541220:five_prime_UTR |
| GCATTAGCCCAGCTGAAAAT+AGG | 0.338887 | 4_1:+24768343 | Msa0541220:CDS |
| CCCATGATGCTTTGTTAAAA+GGG | 0.341152 | 4_1:+24764660 | Msa0541220:five_prime_UTR |
| GGTGTTGGATTCACCTATTT+CGG | 0.357154 | 4_1:+24770876 | Msa0541220:CDS |
| AAGAAATAGTTGTAGATTAC+CGG | 0.362147 | 4_1:+24764752 | Msa0541220:CDS |
| TGTTCATCAAAAGGATAATC+TGG | 0.369652 | 4_1:+24766276 | Msa0541220:CDS |
| ACTGGACAGACAATCATTAT+AGG | 0.371489 | 4_1:+24766188 | Msa0541220:CDS |
| TGAGCAGTGCCTTCCTTGAA+TGG | 0.371548 | 4_1:-24768317 | None:intergenic |
| AAGCACAATGGGATGTTGTT+CGG | 0.380793 | 4_1:-24766637 | None:intergenic |
| CATGTTGATACTGCAATTTA+TGG | 0.381426 | 4_1:+24769097 | Msa0541220:CDS |
| AGCACAATGGGATGTTGTTC+GGG | 0.381532 | 4_1:-24766636 | None:intergenic |
| GTCAATGCAGCACGAGATGC+TGG | 0.386373 | 4_1:+24768753 | Msa0541220:CDS |
| CTACAGCCCTTGGCATGTAT+TGG | 0.388197 | 4_1:+24769072 | Msa0541220:intron |
| CAAAGTCAATAACCTATTTG+TGG | 0.394611 | 4_1:-24771086 | None:intergenic |
| CTCACATTCTTACCACAAAT+AGG | 0.394756 | 4_1:+24771074 | Msa0541220:three_prime_UTR |
| TACAGCCCTTGGCATGTATT+GGG | 0.399945 | 4_1:+24769073 | Msa0541220:intron |
| TTGAACTGCATAAATTTCTC+TGG | 0.408550 | 4_1:-24764794 | None:intergenic |
| TTTACTTCAACATACTTTAG+TGG | 0.409710 | 4_1:-24768375 | None:intergenic |
| GTCTATGGGGACTCGGAGTT+GGG | 0.414145 | 4_1:+24769270 | Msa0541220:CDS |
| GGTGAATCCAACACCGAGTC+AGG | 0.425646 | 4_1:-24770868 | None:intergenic |
| ATCTGGAAAGTCACGTAAAA+GGG | 0.434720 | 4_1:-24768533 | None:intergenic |
| GACCCATGTCCAGCTACTCT+TGG | 0.435847 | 4_1:-24766848 | None:intergenic |
| CGCTTCCACTGTCCATTCCC+AGG | 0.435989 | 4_1:-24770011 | None:intergenic |
| GTAGCTGGACATGGGTCCTT+TGG | 0.436150 | 4_1:+24766854 | Msa0541220:CDS |
| AGCATTTCATAATCCATTCA+AGG | 0.439301 | 4_1:+24768304 | Msa0541220:CDS |
| TGTCCAGCTACTCTTGGACT+TGG | 0.439456 | 4_1:-24766842 | None:intergenic |
| CGAGTCAGGAATTGCATCAA+TGG | 0.442274 | 4_1:-24770854 | None:intergenic |
| AGTCTATGGGGACTCGGAGT+TGG | 0.442506 | 4_1:+24769269 | Msa0541220:CDS |
| GTCCATTCCCAGGCGCTGAA+TGG | 0.442664 | 4_1:-24770001 | None:intergenic |
| AAATGGTAATTACTAAAACT+TGG | 0.445312 | 4_1:-24771015 | None:intergenic |
| AGAAACAATTGTTCATCAAA+AGG | 0.455079 | 4_1:+24766267 | Msa0541220:CDS |
| CCTCCAATTTGAAGCACAAT+GGG | 0.455731 | 4_1:-24766648 | None:intergenic |
| CTGTGGTCTTACACGTCGTC+AGG | 0.456193 | 4_1:+24769129 | Msa0541220:CDS |
| CCTATTTCGGAACCACCTCT+TGG | 0.458915 | 4_1:+24770889 | Msa0541220:CDS |
| GCCAAGCATGCTTTGATATG+AGG | 0.463533 | 4_1:-24766222 | None:intergenic |
| GGGGCGCATGGTGTTATGAT+TGG | 0.468266 | 4_1:+24768774 | Msa0541220:CDS |
| TTCCATTCAGCGCCTGGGAA+TGG | 0.470082 | 4_1:+24769999 | Msa0541220:CDS |
| GTAAACAATATCTACCTCCT+TGG | 0.476668 | 4_1:+24764865 | Msa0541220:CDS |
| CCCATTGTGCTTCAAATTGG+AGG | 0.477496 | 4_1:+24766648 | Msa0541220:CDS |
| TGCCCAAGTCCAAGAGTAGC+TGG | 0.480300 | 4_1:+24766839 | Msa0541220:CDS |
| TTTCAGTGTTGCTCCAATGA+TGG | 0.484165 | 4_1:+24766165 | Msa0541220:intron |
| GTCCAGCTACTCTTGGACTT+GGG | 0.484487 | 4_1:-24766841 | None:intergenic |
| GTCAGTGTCAAATGTCGAAT+TGG | 0.488293 | 4_1:+24767058 | Msa0541220:CDS |
| TATGATAAACATGGGGTGCT+TGG | 0.490151 | 4_1:+24764843 | Msa0541220:CDS |
| TTGTCTGTCCAGTCCATCAT+TGG | 0.490989 | 4_1:-24766178 | None:intergenic |
| GCCTCATATCAAAGCATGCT+TGG | 0.504984 | 4_1:+24766221 | Msa0541220:CDS |
| GCACGAGATGCTGGGGCGCA+TGG | 0.510144 | 4_1:+24768762 | Msa0541220:CDS |
| ACATTTCATGCTTTGTCTCA+GGG | 0.511805 | 4_1:+24764565 | Msa0541220:five_prime_UTR |
| TGCAATTCCTGACTCGGTGT+TGG | 0.513136 | 4_1:+24770861 | Msa0541220:CDS |
| TCAATGCAGCACGAGATGCT+GGG | 0.520088 | 4_1:+24768754 | Msa0541220:CDS |
| ATGGATTATGAAATGCTTAG+TGG | 0.521363 | 4_1:-24768298 | None:intergenic |
| CAACAATCATATGATAAACA+TGG | 0.527138 | 4_1:+24764834 | Msa0541220:CDS |
| TCCAGGTGAATTCATATCCA+CGG | 0.531274 | 4_1:+24768260 | Msa0541220:intron |
| CATTGATGCAATTCCTGACT+CGG | 0.531386 | 4_1:+24770855 | Msa0541220:CDS |
| AACAATCATATGATAAACAT+GGG | 0.532198 | 4_1:+24764835 | Msa0541220:CDS |
| ATTCGACATTTGACACTGAC+AGG | 0.541211 | 4_1:-24767055 | None:intergenic |
| ACTTGGTTTCTGAGAGTGCA+AGG | 0.543962 | 4_1:-24770998 | None:intergenic |
| TTCACGATGTCTCGCACAGT+TGG | 0.548837 | 4_1:-24769309 | None:intergenic |
| TTTAACAAAGCATCATGGGT+TGG | 0.549563 | 4_1:-24764656 | None:intergenic |
| ATATGTAGTCTATGGGGACT+CGG | 0.551069 | 4_1:+24769263 | Msa0541220:CDS |
| AAGTCTTATGCTTGACCCGA+AGG | 0.553336 | 4_1:+24766880 | Msa0541220:CDS |
| TCAAGGAAGGCACTGCTCAA+TGG | 0.553455 | 4_1:+24768321 | Msa0541220:CDS |
| ACATGTCCCAATACATGCCA+AGG | 0.557174 | 4_1:-24769079 | None:intergenic |
| CCCTCCAATTTGAAGCACAA+TGG | 0.559463 | 4_1:-24766649 | None:intergenic |
| AGTCCAAGAGTAGCTGGACA+TGG | 0.565210 | 4_1:+24766845 | Msa0541220:CDS |
| CCATTGTGCTTCAAATTGGA+GGG | 0.565278 | 4_1:+24766649 | Msa0541220:CDS |
| TTTCATAATCCATTCAAGGA+AGG | 0.571399 | 4_1:+24768308 | Msa0541220:CDS |
| CAATGCAGCACGAGATGCTG+GGG | 0.580578 | 4_1:+24768755 | Msa0541220:CDS |
| TGTTTCTGCTGCAAGCATCT+CGG | 0.583567 | 4_1:-24766251 | None:intergenic |
| GTGTTGCTCCAATGATGGAC+TGG | 0.591144 | 4_1:+24766170 | Msa0541220:intron |
| TTAACGTTTACAATAAATGG+AGG | 0.597751 | 4_1:+24768556 | Msa0541220:CDS |
| AGATCTGTGCGGCCAAGAGG+TGG | 0.598769 | 4_1:-24770901 | None:intergenic |
| AGAGGTTGTTCTATGCGCAT+AGG | 0.598889 | 4_1:+24770972 | Msa0541220:CDS |
| ACTTCAACATACTTTAGTGG+AGG | 0.603337 | 4_1:-24768372 | None:intergenic |
| GCCATACAAAACAAGAGAAG+AGG | 0.604707 | 4_1:+24770954 | Msa0541220:CDS |
| TGGATTATGAAATGCTTAGT+GGG | 0.605032 | 4_1:-24768297 | None:intergenic |
| AAAAGATCTGTGCGGCCAAG+AGG | 0.612147 | 4_1:-24770904 | None:intergenic |
| CTTGGTTTCTGAGAGTGCAA+GGG | 0.625472 | 4_1:-24770997 | None:intergenic |
| GTCCAAGAGTAGCTGGACAT+GGG | 0.636881 | 4_1:+24766846 | Msa0541220:CDS |
| TATACAAGGAAAGTTTGTTG+CGG | 0.637006 | 4_1:+24766997 | Msa0541220:intron |
| TGTCAAATGTCGAATTGGTG+TGG | 0.664761 | 4_1:+24767063 | Msa0541220:CDS |
| CAGCGCCTGGGAATGGACAG+TGG | 0.665445 | 4_1:+24770006 | Msa0541220:CDS |
| CATGTCCCAATACATGCCAA+GGG | 0.670330 | 4_1:-24769078 | None:intergenic |
| ATTTATGGTGCACAAAGCTG+TGG | 0.678668 | 4_1:+24769112 | Msa0541220:CDS |
| GGGTGATAAAGAAGAAACCG+TGG | 0.679450 | 4_1:-24768277 | None:intergenic |
| GATAGTACTCACCTAAACCA+AGG | 0.689488 | 4_1:-24764882 | None:intergenic |
| AAGCATAAGACTTACACCAA+AGG | 0.692742 | 4_1:-24766870 | None:intergenic |
| ACAATCATATGATAAACATG+GGG | 0.693233 | 4_1:+24764836 | Msa0541220:CDS |
| AGGCATTACTAGTGTTGATG+AGG | 0.694116 | 4_1:+24768576 | Msa0541220:CDS |
| GAAGCTAAAGCAAAACACAG+TGG | 0.702898 | 4_1:+24771145 | Msa0541220:three_prime_UTR |
| AACTGTGCGAGACATCGTGA+AGG | 0.727376 | 4_1:+24769311 | Msa0541220:CDS |
| TGGACAGTGGAAGCGCAATG+CGG | 0.758211 | 4_1:+24770019 | Msa0541220:CDS |
| AGTACTCACCTAAACCAAGG+AGG | 0.768360 | 4_1:-24764879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGATTGTTTATTTTTA+GGG | + | chr4_1:24765593-24765612 | Msa0541220:intron | 10.0% |
| !!! | TGATAAATTATTTCAATTTT+AGG | - | chr4_1:24765704-24765723 | None:intergenic | 10.0% |
| !!! | TTGAAATTTCAATAATTTTA+AGG | + | chr4_1:24765813-24765832 | Msa0541220:intron | 10.0% |
| !!! | TGAAATTTCAATAATTTTAA+GGG | + | chr4_1:24765814-24765833 | Msa0541220:intron | 10.0% |
| !!! | ATAATTTTTTATAAAATGAG+AGG | - | chr4_1:24767192-24767211 | None:intergenic | 10.0% |
| !! | TCTTCTATAATAATAATATT+TGG | + | chr4_1:24768196-24768215 | Msa0541220:intron | 10.0% |
| !! | ATAAATTATTAAACAACAAA+TGG | - | chr4_1:24769215-24769234 | None:intergenic | 10.0% |
| !!! | CCAAAAAATAAATTTTATAT+TGG | - | chr4_1:24769509-24769528 | None:intergenic | 10.0% |
| !!! | CCAATATAAAATTTATTTTT+TGG | + | chr4_1:24769506-24769525 | Msa0541220:intron | 10.0% |
| !! | AAAATATTGAATATTACATA+GGG | - | chr4_1:24769688-24769707 | None:intergenic | 10.0% |
| !! | AAAAATATTGAATATTACAT+AGG | - | chr4_1:24769689-24769708 | None:intergenic | 10.0% |
| !!! | CAAAATGATTGTTTATTTTT+AGG | + | chr4_1:24765592-24765611 | Msa0541220:intron | 15.0% |
| !!! | TTGTCAATTTTTATATTCAA+TGG | + | chr4_1:24765785-24765804 | Msa0541220:intron | 15.0% |
| !! | ACACAAAATGAAAAAATAAA+TGG | - | chr4_1:24766584-24766603 | None:intergenic | 15.0% |
| !!! | AGATTTTGAGATTAATAAAT+TGG | + | chr4_1:24767610-24767629 | Msa0541220:intron | 15.0% |
| !! | ATAATATATTCAATGAGTAA+TGG | - | chr4_1:24767832-24767851 | None:intergenic | 15.0% |
| !! | ATTACTCATTGAATATATTA+TGG | + | chr4_1:24767831-24767850 | Msa0541220:intron | 15.0% |
| !!! | AATCTAAGAGAAAATAATTT+TGG | + | chr4_1:24767884-24767903 | Msa0541220:intron | 15.0% |
| !! | TAATAATAATATTTGGATCA+TGG | + | chr4_1:24768203-24768222 | Msa0541220:intron | 15.0% |
| !!! | TTTATTTTCGTATTTACTTT+AGG | + | chr4_1:24769230-24769249 | Msa0541220:intron | 15.0% |
| !!! | AGTCAATTTTTAAAGTTTTA+AGG | + | chr4_1:24769466-24769485 | Msa0541220:intron | 15.0% |
| !! | AAATATTGAATATTACATAG+GGG | - | chr4_1:24769687-24769706 | None:intergenic | 15.0% |
| !!! | AAATACCTGTTTTTATAAAA+AGG | + | chr4_1:24769768-24769787 | Msa0541220:intron | 15.0% |
| !! | AAAATGGTCAAAAAAATTAT+TGG | + | chr4_1:24769799-24769818 | Msa0541220:intron | 15.0% |
| !! | AAATGGTCAAAAAAATTATT+GGG | + | chr4_1:24769800-24769819 | Msa0541220:intron | 15.0% |
| !! | ATTTGAATATATTCACTAAT+AGG | - | chr4_1:24769913-24769932 | None:intergenic | 15.0% |
| !! | AACAATCATATGATAAACAT+GGG | + | chr4_1:24764835-24764854 | Msa0541220:CDS | 20.0% |
| !!! | TACAGTTACTCTTTAAAATA+CGG | + | chr4_1:24765072-24765091 | Msa0541220:intron | 20.0% |
| !! | TTAAAATACGGTTACAATAT+AGG | + | chr4_1:24765084-24765103 | Msa0541220:intron | 20.0% |
| !!! | TATATGTGTTAGTAGTTTTA+TGG | + | chr4_1:24765404-24765423 | Msa0541220:intron | 20.0% |
| !!! | TTAGTTTTTGAAATTGTAAG+AGG | + | chr4_1:24765638-24765657 | Msa0541220:intron | 20.0% |
| !! | CAAATTGGTCATTAAAATTA+GGG | - | chr4_1:24766017-24766036 | None:intergenic | 20.0% |
| !! | TAATAAATATATATCAGCTG+TGG | + | chr4_1:24766815-24766834 | Msa0541220:intron | 20.0% |
| !! | AAAAGGCTATTCAATTTATT+AGG | + | chr4_1:24767370-24767389 | Msa0541220:intron | 20.0% |
| !! | ATTATTATCACAAAATCCAT+TGG | + | chr4_1:24767404-24767423 | Msa0541220:intron | 20.0% |
| !!! | TGTTTTCTTTAATACCTAAT+TGG | + | chr4_1:24767431-24767450 | Msa0541220:intron | 20.0% |
| !! | AATCTCAAAATCTTACTTAA+GGG | - | chr4_1:24767603-24767622 | None:intergenic | 20.0% |
| !! | TAATCTCAAAATCTTACTTA+AGG | - | chr4_1:24767604-24767623 | None:intergenic | 20.0% |
| !!! | TTTGAGATTAATAAATTGGA+CGG | + | chr4_1:24767614-24767633 | Msa0541220:intron | 20.0% |
| !!! | TAAGAGAAAATAATTTTGGT+AGG | + | chr4_1:24767888-24767907 | Msa0541220:intron | 20.0% |
| !! | ATTTATAAGATTACCACAAA+GGG | - | chr4_1:24767961-24767980 | None:intergenic | 20.0% |
| !! | AATTTATAAGATTACCACAA+AGG | - | chr4_1:24767962-24767981 | None:intergenic | 20.0% |
| !! | TTGTGGTAATCTTATAAATT+AGG | + | chr4_1:24767962-24767981 | Msa0541220:intron | 20.0% |
| !! | AAGTATGTTGAAGTAAAATT+TGG | + | chr4_1:24768381-24768400 | Msa0541220:intron | 20.0% |
| !! | TTTATTGTAAACGTTAAATC+TGG | - | chr4_1:24768553-24768572 | None:intergenic | 20.0% |
| !! | GATTTAACGTTTACAATAAA+TGG | + | chr4_1:24768553-24768572 | Msa0541220:CDS | 20.0% |
| !! | CAAATATTTCAACAAATATC+AGG | - | chr4_1:24768639-24768658 | None:intergenic | 20.0% |
| !!! | CTGATATTTGTTGAAATATT+TGG | + | chr4_1:24768637-24768656 | Msa0541220:intron | 20.0% |
| !!! | TTTTTGTTTGAAAAATTGCA+TGG | - | chr4_1:24768850-24768869 | None:intergenic | 20.0% |
| !! | TAGCATTTCAATTCAATAAA+AGG | + | chr4_1:24768902-24768921 | Msa0541220:intron | 20.0% |
| !! | AGCATTTCAATTCAATAAAA+GGG | + | chr4_1:24768903-24768922 | Msa0541220:intron | 20.0% |
| !! | TTGAAAAATATGTAGTCTAT+GGG | + | chr4_1:24769256-24769275 | Msa0541220:CDS | 20.0% |
| !! | GAAATTGCAAAATCAATTTA+AGG | - | chr4_1:24769344-24769363 | None:intergenic | 20.0% |
| !!! | ATGAAGTGTTCATATTTAAT+TGG | + | chr4_1:24769644-24769663 | Msa0541220:intron | 20.0% |
| !!! | TGAAGTGTTCATATTTAATT+GGG | + | chr4_1:24769645-24769664 | Msa0541220:intron | 20.0% |
| !!! | TTTATTTTTAAATATCGGAG+AGG | + | chr4_1:24769846-24769865 | Msa0541220:intron | 20.0% |
| !! | ACTGAAGTCAAAAAAAAAAA+TGG | - | chr4_1:24770117-24770136 | None:intergenic | 20.0% |
| !!! | AGTTTATTTCTTATCCTTAA+AGG | + | chr4_1:24770271-24770290 | Msa0541220:intron | 20.0% |
| !!! | AAATAGTTCTATGACTTTAT+AGG | - | chr4_1:24770300-24770319 | None:intergenic | 20.0% |
| !!! | TCAGTATTTTAACATAGTTA+TGG | + | chr4_1:24770361-24770380 | Msa0541220:intron | 20.0% |
| !!! | CAGTATTTTAACATAGTTAT+GGG | + | chr4_1:24770362-24770381 | Msa0541220:intron | 20.0% |
| !!! | TTGTTGTTTAACATAGTTAT+GGG | + | chr4_1:24770593-24770612 | Msa0541220:intron | 20.0% |
| !! | TAAGATGAAGAATTACTTAA+AGG | - | chr4_1:24770640-24770659 | None:intergenic | 20.0% |
| !! | AAATGGTAATTACTAAAACT+TGG | - | chr4_1:24771018-24771037 | None:intergenic | 20.0% |
| ! | TTTAAATTTGGAAGTGAATG+AGG | - | chr4_1:24764544-24764563 | None:intergenic | 25.0% |
| ! | GCATGAAATGTGTTTAAATT+TGG | - | chr4_1:24764556-24764575 | None:intergenic | 25.0% |
| ! | AAAAATCGTTACTTAAACTG+CGG | - | chr4_1:24764605-24764624 | None:intergenic | 25.0% |
| !! | GATGAAAAATGAAGTTTTCA+GGG | + | chr4_1:24764682-24764701 | Msa0541220:exon | 25.0% |
| !! | CTGATGAAATTTGAAGTTAA+AGG | - | chr4_1:24764732-24764751 | None:intergenic | 25.0% |
| ! | AAGAAATAGTTGTAGATTAC+CGG | + | chr4_1:24764752-24764771 | Msa0541220:CDS | 25.0% |
| ! | CAACAATCATATGATAAACA+TGG | + | chr4_1:24764834-24764853 | Msa0541220:CDS | 25.0% |
| ! | ACAATCATATGATAAACATG+GGG | + | chr4_1:24764836-24764855 | Msa0541220:CDS | 25.0% |
| !!! | GCAACTTTTTTTTTTTAACG+AGG | + | chr4_1:24764908-24764927 | Msa0541220:intron | 25.0% |
| ! | GTCAATAAGAATGAGTAATT+TGG | + | chr4_1:24765189-24765208 | Msa0541220:intron | 25.0% |
| ! | ATTTAATTAGTACGCATTGT+CGG | - | chr4_1:24765268-24765287 | None:intergenic | 25.0% |
| !!! | ATGATTGTTTATTTTTAGGG+AGG | + | chr4_1:24765596-24765615 | Msa0541220:intron | 25.0% |
| !!! | TGATTGTTTATTTTTAGGGA+GGG | + | chr4_1:24765597-24765616 | Msa0541220:intron | 25.0% |
| !!! | TTGTTTTGAATCAGTCAATT+TGG | + | chr4_1:24765730-24765749 | Msa0541220:intron | 25.0% |
| ! | GCAAATTGGTCATTAAAATT+AGG | - | chr4_1:24766018-24766037 | None:intergenic | 25.0% |
| ! | AGAAACAATTGTTCATCAAA+AGG | + | chr4_1:24766267-24766286 | Msa0541220:CDS | 25.0% |
| ! | GTGGTAAAATATATCTGTAT+AGG | + | chr4_1:24766411-24766430 | Msa0541220:intron | 25.0% |
| ! | ATTGTTTATATCATAGCAGT+GGG | + | chr4_1:24766469-24766488 | Msa0541220:intron | 25.0% |
| !!! | CTTTAAGATTTAACGTGATA+TGG | - | chr4_1:24766757-24766776 | None:intergenic | 25.0% |
| ! | AGAGAAATCTAATGTATACA+AGG | + | chr4_1:24766983-24767002 | Msa0541220:intron | 25.0% |
| ! | TTCTTATGATGAACTTTGTA+AGG | + | chr4_1:24767096-24767115 | Msa0541220:intron | 25.0% |
| !! | CTTTTAGATTGCATTCAAAA+AGG | + | chr4_1:24767353-24767372 | Msa0541220:intron | 25.0% |
| ! | TTAAAGAAAACAGAAACCAA+TGG | - | chr4_1:24767423-24767442 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr4_1:24767581-24767600 | None:intergenic | 25.0% |
| ! | TAATAAATTGGACGGAAATA+TGG | + | chr4_1:24767622-24767641 | Msa0541220:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | chr4_1:24767642-24767661 | Msa0541220:intron | 25.0% |
| ! | GGTTTATGATAGAACATTAT+GGG | + | chr4_1:24767643-24767662 | Msa0541220:intron | 25.0% |
| !! | TAATCTTTGTTTAGGAAATC+AGG | + | chr4_1:24767760-24767779 | Msa0541220:intron | 25.0% |
| ! | AGGATCAATATAGTATCATT+GGG | + | chr4_1:24767780-24767799 | Msa0541220:intron | 25.0% |
| ! | GATTTGTAACAATAGTAGAT+AGG | - | chr4_1:24768021-24768040 | None:intergenic | 25.0% |
| ! | CTATTGTTACAAATCGAAAT+TGG | + | chr4_1:24768026-24768045 | Msa0541220:intron | 25.0% |
| !! | TTTTCTATCCAATGTTACAT+GGG | + | chr4_1:24768067-24768086 | Msa0541220:intron | 25.0% |
| ! | TTACATGGGATTTAGTATTT+GGG | + | chr4_1:24768081-24768100 | Msa0541220:intron | 25.0% |
| ! | TAAGATCTAAATCACATCAT+TGG | - | chr4_1:24768166-24768185 | None:intergenic | 25.0% |
| ! | AATGATGTGATTTAGATCTT+AGG | + | chr4_1:24768165-24768184 | Msa0541220:intron | 25.0% |
| ! | TTTACTTCAACATACTTTAG+TGG | - | chr4_1:24768378-24768397 | None:intergenic | 25.0% |
| ! | TTAACGTTTACAATAAATGG+AGG | + | chr4_1:24768556-24768575 | Msa0541220:CDS | 25.0% |
| ! | TAAGATAACAAATTTAGTGC+TGG | - | chr4_1:24768669-24768688 | None:intergenic | 25.0% |
| !!! | CAAAAAAGTTGCTTTATTTC+AGG | + | chr4_1:24768864-24768883 | Msa0541220:intron | 25.0% |
| ! | TTGCACAAACAATATTAAGA+GGG | - | chr4_1:24769011-24769030 | None:intergenic | 25.0% |
| ! | TTTGCACAAACAATATTAAG+AGG | - | chr4_1:24769012-24769031 | None:intergenic | 25.0% |
| ! | CTTGAAAAATATGTAGTCTA+TGG | + | chr4_1:24769255-24769274 | Msa0541220:CDS | 25.0% |
| ! | TGAAAAATATGTAGTCTATG+GGG | + | chr4_1:24769257-24769276 | Msa0541220:CDS | 25.0% |
| !!! | TTTTTTTTGAAAGAGAGTAC+AGG | - | chr4_1:24769599-24769618 | None:intergenic | 25.0% |
| !! | GTCTCTATCTTTTACAAAAA+CGG | + | chr4_1:24769717-24769736 | Msa0541220:intron | 25.0% |
| !!! | ACCTGTTTTTATAAAAAGGA+AGG | + | chr4_1:24769772-24769791 | Msa0541220:intron | 25.0% |
| !! | TCCTTCCTTTTTATAAAAAC+AGG | - | chr4_1:24769776-24769795 | None:intergenic | 25.0% |
| ! | TAAAAAGGAAGGAGTAAAAA+TGG | + | chr4_1:24769783-24769802 | Msa0541220:intron | 25.0% |
| ! | TATATAACATGCAAATGCAA+GGG | - | chr4_1:24769890-24769909 | None:intergenic | 25.0% |
| ! | GAATGGAAAAAATTGAGTAA+AGG | - | chr4_1:24769987-24770006 | None:intergenic | 25.0% |
| !! | GTTTCTCTAATAGTTTTCTT+AGG | - | chr4_1:24770437-24770456 | None:intergenic | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr4_1:24770454-24770473 | Msa0541220:intron | 25.0% |
| !!! | GTTGTTGTTTAACATAGTTA+TGG | + | chr4_1:24770592-24770611 | Msa0541220:intron | 25.0% |
| ! | ACTTCATTTCACACAAAAAA+TGG | - | chr4_1:24771035-24771054 | None:intergenic | 25.0% |
| !! | ATTTTGAACTGTGGAATATT+AGG | + | chr4_1:24771207-24771226 | Msa0541220:three_prime_UTR | 25.0% |
| ! | GGATGAAAAATGAAGTTTTC+AGG | + | chr4_1:24764681-24764700 | Msa0541220:exon | 30.0% |
| !! | GTTTTCAGGGTATTCAATTT+CGG | + | chr4_1:24764695-24764714 | Msa0541220:CDS | 30.0% |
| TTGAACTGCATAAATTTCTC+TGG | - | chr4_1:24764797-24764816 | None:intergenic | 30.0% | |
| ! | TTTTTAACGAGGAGTAATTG+TGG | + | chr4_1:24764919-24764938 | Msa0541220:intron | 30.0% |
| ! | ATGTTTTCCACAGACAATAT+AGG | + | chr4_1:24765159-24765178 | Msa0541220:intron | 30.0% |
| ! | AAGCTTATGTGGCAATATTT+TGG | + | chr4_1:24765314-24765333 | Msa0541220:intron | 30.0% |
| ! | AGCTTATGTGGCAATATTTT+GGG | + | chr4_1:24765315-24765334 | Msa0541220:intron | 30.0% |
| ! | GATGTTTTATCGAGATACAT+TGG | - | chr4_1:24765378-24765397 | None:intergenic | 30.0% |
| ! | CAAACTTGTCTTTTCTTACT+CGG | - | chr4_1:24765436-24765455 | None:intergenic | 30.0% |
| TCAAGCTAAGGAGTTTAAAA+TGG | + | chr4_1:24765862-24765881 | Msa0541220:intron | 30.0% | |
| ! | CATTGAATGCACAATTTTCA+AGG | + | chr4_1:24765935-24765954 | Msa0541220:intron | 30.0% |
| CAAGGAAAAATTTCTGCATT+TGG | + | chr4_1:24765953-24765972 | Msa0541220:intron | 30.0% | |
| !! | ATGTTATCTCTAAAGTCGTA+GGG | - | chr4_1:24766046-24766065 | None:intergenic | 30.0% |
| !! | AATGTTATCTCTAAAGTCGT+AGG | - | chr4_1:24766047-24766066 | None:intergenic | 30.0% |
| ! | TACGACTTTAGAGATAACAT+TGG | + | chr4_1:24766046-24766065 | Msa0541220:intron | 30.0% |
| !! | CAGTTATCTTTAAAGTCGTA+GGG | - | chr4_1:24766094-24766113 | None:intergenic | 30.0% |
| !! | TCAGTTATCTTTAAAGTCGT+AGG | - | chr4_1:24766095-24766114 | None:intergenic | 30.0% |
| !! | GATAACTGAACTGATTTTGT+TGG | + | chr4_1:24766106-24766125 | Msa0541220:intron | 30.0% |
| ! | CTGATTTTGTTGGCATATTT+TGG | + | chr4_1:24766116-24766135 | Msa0541220:intron | 30.0% |
| TGTTCATCAAAAGGATAATC+TGG | + | chr4_1:24766276-24766295 | Msa0541220:CDS | 30.0% | |
| AAATGAAAGAGTGAAAGTGA+AGG | + | chr4_1:24766332-24766351 | Msa0541220:intron | 30.0% | |
| AATGAAAGAGTGAAAGTGAA+GGG | + | chr4_1:24766333-24766352 | Msa0541220:intron | 30.0% | |
| CCACAAAAAATCATGATTGT+AGG | - | chr4_1:24766395-24766414 | None:intergenic | 30.0% | |
| !!! | CCTACAATCATGATTTTTTG+TGG | + | chr4_1:24766392-24766411 | Msa0541220:intron | 30.0% |
| GATTGTTTATATCATAGCAG+TGG | + | chr4_1:24766468-24766487 | Msa0541220:intron | 30.0% | |
| TGCTATTCAATCATCAAATG+TGG | + | chr4_1:24766539-24766558 | Msa0541220:intron | 30.0% | |
| GCTATTCAATCATCAAATGT+GGG | + | chr4_1:24766540-24766559 | Msa0541220:intron | 30.0% | |
| TCAATATGACAACATGCAAT+TGG | + | chr4_1:24766922-24766941 | Msa0541220:intron | 30.0% | |
| !! | TATACAAGGAAAGTTTGTTG+CGG | + | chr4_1:24766997-24767016 | Msa0541220:intron | 30.0% |
| ACAACTAAGCTGTACTTAAA+TGG | + | chr4_1:24767292-24767311 | Msa0541220:intron | 30.0% | |
| TCTTTAATACCTAATTGGTG+TGG | + | chr4_1:24767436-24767455 | Msa0541220:intron | 30.0% | |
| CTTTAATACCTAATTGGTGT+GGG | + | chr4_1:24767437-24767456 | Msa0541220:intron | 30.0% | |
| TCTAATTGTAACATGCTGAT+AGG | + | chr4_1:24767731-24767750 | Msa0541220:intron | 30.0% | |
| ! | GGAGTTTGTAATCTTTGTTT+AGG | + | chr4_1:24767752-24767771 | Msa0541220:intron | 30.0% |
| CAGGATCAATATAGTATCAT+TGG | + | chr4_1:24767779-24767798 | Msa0541220:intron | 30.0% | |
| GGATCAATATAGTATCATTG+GGG | + | chr4_1:24767781-24767800 | Msa0541220:intron | 30.0% | |
| GATCAATATAGTATCATTGG+GGG | + | chr4_1:24767782-24767801 | Msa0541220:intron | 30.0% | |
| ! | CTTTTCTATCCAATGTTACA+TGG | + | chr4_1:24768066-24768085 | Msa0541220:intron | 30.0% |
| TACTAAATCCCATGTAACAT+TGG | - | chr4_1:24768078-24768097 | None:intergenic | 30.0% | |
| GTTACATGGGATTTAGTATT+TGG | + | chr4_1:24768080-24768099 | Msa0541220:intron | 30.0% | |
| AATATTTGGATCATGGTTTC+TGG | + | chr4_1:24768210-24768229 | Msa0541220:intron | 30.0% | |
| ATATTTGGATCATGGTTTCT+GGG | + | chr4_1:24768211-24768230 | Msa0541220:intron | 30.0% | |
| TGGATTATGAAATGCTTAGT+GGG | - | chr4_1:24768300-24768319 | None:intergenic | 30.0% | |
| ! | ATGGATTATGAAATGCTTAG+TGG | - | chr4_1:24768301-24768320 | None:intergenic | 30.0% |
| AGCATTTCATAATCCATTCA+AGG | + | chr4_1:24768304-24768323 | Msa0541220:CDS | 30.0% | |
| TTTCATAATCCATTCAAGGA+AGG | + | chr4_1:24768308-24768327 | Msa0541220:CDS | 30.0% | |
| TTGTATGTCTACATGTACAT+GGG | - | chr4_1:24768445-24768464 | None:intergenic | 30.0% | |
| AAAAATTGCATGGTCAAAAG+GGG | - | chr4_1:24768840-24768859 | None:intergenic | 30.0% | |
| GAAAAATTGCATGGTCAAAA+GGG | - | chr4_1:24768841-24768860 | None:intergenic | 30.0% | |
| TGAAAAATTGCATGGTCAAA+AGG | - | chr4_1:24768842-24768861 | None:intergenic | 30.0% | |
| AAAATCATCACCAAAGCTTA+AGG | + | chr4_1:24768929-24768948 | Msa0541220:intron | 30.0% | |
| !! | ACCAAAGCTTAAGGTTTTAA+GGG | + | chr4_1:24768938-24768957 | Msa0541220:intron | 30.0% |
| TGCACAAACAATATTAAGAG+GGG | - | chr4_1:24769010-24769029 | None:intergenic | 30.0% | |
| GCTGTAGAGATTATCAAAAA+TGG | - | chr4_1:24769059-24769078 | None:intergenic | 30.0% | |
| CATGTTGATACTGCAATTTA+TGG | + | chr4_1:24769097-24769116 | Msa0541220:CDS | 30.0% | |
| AGAAATTTCCAGAGAACAAA+AGG | - | chr4_1:24769372-24769391 | None:intergenic | 30.0% | |
| CTCATATTATGTAGAATAGC+TGG | + | chr4_1:24769398-24769417 | Msa0541220:intron | 30.0% | |
| ! | CTATCTTTTACAAAAACGGA+TGG | + | chr4_1:24769721-24769740 | Msa0541220:intron | 30.0% |
| !!! | GTATTTTTAGTCCGTCTATA+GGG | - | chr4_1:24769754-24769773 | None:intergenic | 30.0% |
| ATATAACATGCAAATGCAAG+GGG | - | chr4_1:24769889-24769908 | None:intergenic | 30.0% | |
| GTATATAACATGCAAATGCA+AGG | - | chr4_1:24769891-24769910 | None:intergenic | 30.0% | |
| ATATAATAGCAGCTAATTGG+AGG | - | chr4_1:24769941-24769960 | None:intergenic | 30.0% | |
| GTCATATAATAGCAGCTAAT+TGG | - | chr4_1:24769944-24769963 | None:intergenic | 30.0% | |
| !! | TTTTGTGCCATTCCTATTTA+TGG | + | chr4_1:24770192-24770211 | Msa0541220:intron | 30.0% |
| TTACCATCCATAAATAGGAA+TGG | - | chr4_1:24770202-24770221 | None:intergenic | 30.0% | |
| ATTCCTATTTATGGATGGTA+AGG | + | chr4_1:24770201-24770220 | Msa0541220:intron | 30.0% | |
| GACTTTATAGGATTCCTTTA+AGG | - | chr4_1:24770288-24770307 | None:intergenic | 30.0% | |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr4_1:24770459-24770478 | None:intergenic | 30.0% |
| GTTCTATCAAAGACCATATT+TGG | - | chr4_1:24770494-24770513 | None:intergenic | 30.0% | |
| TGGTCTTTGATAGAACATTA+TGG | + | chr4_1:24770498-24770517 | Msa0541220:intron | 30.0% | |
| TCTTTGATAGAACATTATGG+CGG | + | chr4_1:24770501-24770520 | Msa0541220:intron | 30.0% | |
| ! | GAACTTTTGAACTTTGTAGA+CGG | + | chr4_1:24770810-24770829 | Msa0541220:intron | 30.0% |
| TATTAGCAAAAAGATCTGTG+CGG | - | chr4_1:24770915-24770934 | None:intergenic | 30.0% | |
| CAAAGTCAATAACCTATTTG+TGG | - | chr4_1:24771089-24771108 | None:intergenic | 30.0% | |
| !!! | TTAGCAGTTATTTTGAACTG+TGG | + | chr4_1:24771198-24771217 | Msa0541220:three_prime_UTR | 30.0% |
| TCATGTAAGGAAAAGGAAAA+AGG | + | chr4_1:24771241-24771260 | Msa0541220:intron | 30.0% | |
| CATGTAAGGAAAAGGAAAAA+GGG | + | chr4_1:24771242-24771261 | Msa0541220:intron | 30.0% | |
| ACATTTCATGCTTTGTCTCA+GGG | + | chr4_1:24764565-24764584 | Msa0541220:five_prime_UTR | 35.0% | |
| ! | TTTAACAAAGCATCATGGGT+TGG | - | chr4_1:24764659-24764678 | None:intergenic | 35.0% |
| ! | ACCCATGATGCTTTGTTAAA+AGG | + | chr4_1:24764659-24764678 | Msa0541220:five_prime_UTR | 35.0% |
| !! | CCCTTTTAACAAAGCATCAT+GGG | - | chr4_1:24764663-24764682 | None:intergenic | 35.0% |
| ! | CCCATGATGCTTTGTTAAAA+GGG | + | chr4_1:24764660-24764679 | Msa0541220:five_prime_UTR | 35.0% |
| !! | TCCCTTTTAACAAAGCATCA+TGG | - | chr4_1:24764664-24764683 | None:intergenic | 35.0% |
| GTAAACAATATCTACCTCCT+TGG | + | chr4_1:24764865-24764884 | Msa0541220:CDS | 35.0% | |
| AATATCTACCTCCTTGGTTT+AGG | + | chr4_1:24764871-24764890 | Msa0541220:CDS | 35.0% | |
| GGTTACAATATAGGCTTATG+TGG | + | chr4_1:24765093-24765112 | Msa0541220:intron | 35.0% | |
| TCATAAGCCTATATTGTCTG+TGG | - | chr4_1:24765169-24765188 | None:intergenic | 35.0% | |
| ! | TTTGGGTTCTCATTTGATGT+TGG | + | chr4_1:24765332-24765351 | Msa0541220:intron | 35.0% |
| ! | TCCTTGAATGCGTTTTTCAT+CGG | - | chr4_1:24765504-24765523 | None:intergenic | 35.0% |
| CTTCTTAACTTATGCTCCAA+GGG | + | chr4_1:24765976-24765995 | Msa0541220:intron | 35.0% | |
| ! | GACTTTAGAGATAACATTGG+TGG | + | chr4_1:24766049-24766068 | Msa0541220:intron | 35.0% |
| ACTGGACAGACAATCATTAT+AGG | + | chr4_1:24766188-24766207 | Msa0541220:CDS | 35.0% | |
| ATGAAAGAGTGAAAGTGAAG+GGG | + | chr4_1:24766334-24766353 | Msa0541220:intron | 35.0% | |
| ! | TCATTTTGTGTATTCTGCTC+AGG | + | chr4_1:24766593-24766612 | Msa0541220:intron | 35.0% |
| AAGCATAAGACTTACACCAA+AGG | - | chr4_1:24766873-24766892 | None:intergenic | 35.0% | |
| ACTAAGCTGTACTTAAATGG+TGG | + | chr4_1:24767326-24767345 | Msa0541220:intron | 35.0% | |
| ! | GACCTTTGGATTTTGTAGTA+AGG | + | chr4_1:24767508-24767527 | Msa0541220:intron | 35.0% |
| CTCCTTACTACAAAATCCAA+AGG | - | chr4_1:24767513-24767532 | None:intergenic | 35.0% | |
| TTCAGAAGCAATATGACTCT+TGG | - | chr4_1:24767938-24767957 | None:intergenic | 35.0% | |
| CAATAGTAGATAGGAGATAG+TGG | - | chr4_1:24768012-24768031 | None:intergenic | 35.0% | |
| TTGGAAATGTATTAAGCTGC+AGG | - | chr4_1:24768147-24768166 | None:intergenic | 35.0% | |
| !!! | TGAATTTTCTGCTGTTTTCC+AGG | + | chr4_1:24768243-24768262 | Msa0541220:intron | 35.0% |
| ! | GAATACTCCTATTTTCAGCT+GGG | - | chr4_1:24768353-24768372 | None:intergenic | 35.0% |
| ACTTCAACATACTTTAGTGG+AGG | - | chr4_1:24768375-24768394 | None:intergenic | 35.0% | |
| CTTGTATGTCTACATGTACA+TGG | - | chr4_1:24768446-24768465 | None:intergenic | 35.0% | |
| ATCTGGAAAGTCACGTAAAA+GGG | - | chr4_1:24768536-24768555 | None:intergenic | 35.0% | |
| AATCTGGAAAGTCACGTAAA+AGG | - | chr4_1:24768537-24768556 | None:intergenic | 35.0% | |
| TTCTTCTGACGATTCTTTCT+TGG | + | chr4_1:24768702-24768721 | Msa0541220:intron | 35.0% | |
| AAAATTGCATGGTCAAAAGG+GGG | - | chr4_1:24768839-24768858 | None:intergenic | 35.0% | |
| !! | TTGCTTTATTTCAGGAACCA+GGG | + | chr4_1:24768872-24768891 | Msa0541220:intron | 35.0% |
| TGAAATGCTAAGTAAAACCC+TGG | - | chr4_1:24768892-24768911 | None:intergenic | 35.0% | |
| ! | CACCAAAGCTTAAGGTTTTA+AGG | + | chr4_1:24768937-24768956 | Msa0541220:intron | 35.0% |
| TCCCTTAAAACCTTAAGCTT+TGG | - | chr4_1:24768942-24768961 | None:intergenic | 35.0% | |
| !!! | AGCTTAAGGTTTTAAGGGAA+TGG | + | chr4_1:24768943-24768962 | Msa0541220:intron | 35.0% |
| GTTTGTGCAAAATTGCTATG+CGG | + | chr4_1:24769021-24769040 | Msa0541220:intron | 35.0% | |
| ! | TTCTTACTCCTTTTGTTCTC+TGG | + | chr4_1:24769361-24769380 | Msa0541220:intron | 35.0% |
| AGAATAGCTGGTATTCGATA+AGG | + | chr4_1:24769410-24769429 | Msa0541220:intron | 35.0% | |
| ACTTCTTAACAAATGCCCTT+AGG | + | chr4_1:24769529-24769548 | Msa0541220:intron | 35.0% | |
| CTTCTTAACAAATGCCCTTA+GGG | + | chr4_1:24769530-24769549 | Msa0541220:intron | 35.0% | |
| !!! | ATGGTTTTAGTCCCTATAGA+CGG | + | chr4_1:24769740-24769759 | Msa0541220:intron | 35.0% |
| !!! | GGTATTTTTAGTCCGTCTAT+AGG | - | chr4_1:24769755-24769774 | None:intergenic | 35.0% |
| TATGGGAAGAGTAGATCAAA+TGG | + | chr4_1:24770379-24770398 | Msa0541220:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr4_1:24770466-24770485 | Msa0541220:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr4_1:24770478-24770497 | Msa0541220:intron | 35.0% |
| TAACATAGTTATGGGAGAAG+TGG | + | chr4_1:24770601-24770620 | Msa0541220:intron | 35.0% | |
| !!! | TCTTCTCTTGTTTTGTATGG+CGG | - | chr4_1:24770955-24770974 | None:intergenic | 35.0% |
| !!! | ACCTCTTCTCTTGTTTTGTA+TGG | - | chr4_1:24770958-24770977 | None:intergenic | 35.0% |
| CTCACATTCTTACCACAAAT+AGG | + | chr4_1:24771074-24771093 | Msa0541220:three_prime_UTR | 35.0% | |
| TCATGAGTCATGTAAGGAAA+AGG | + | chr4_1:24771234-24771253 | Msa0541220:intron | 35.0% | |
| AAGGAAAAGGAAAAAGGGAA+AGG | + | chr4_1:24771247-24771266 | Msa0541220:intron | 35.0% | |
| CACATTTCATGCTTTGTCTC+AGG | + | chr4_1:24764564-24764583 | Msa0541220:five_prime_UTR | 40.0% | |
| ! | TATGATAAACATGGGGTGCT+TGG | + | chr4_1:24764843-24764862 | Msa0541220:CDS | 40.0% |
| GATAGTACTCACCTAAACCA+AGG | - | chr4_1:24764885-24764904 | None:intergenic | 40.0% | |
| TGGTCGTTAAATGTGTGAGA+CGG | + | chr4_1:24764939-24764958 | Msa0541220:intron | 40.0% | |
| ATATAGGCTTATGTGGCAAC+TGG | + | chr4_1:24765100-24765119 | Msa0541220:intron | 40.0% | |
| TTATGTGGCAACTGGCAATA+TGG | + | chr4_1:24765108-24765127 | Msa0541220:intron | 40.0% | |
| GGTTACAGTACAAGCTTATG+TGG | + | chr4_1:24765303-24765322 | Msa0541220:intron | 40.0% | |
| ! | GCGTTTTTCATCGGTAAGTT+TGG | - | chr4_1:24765495-24765514 | None:intergenic | 40.0% |
| ACCGATGAAAAACGCATTCA+AGG | + | chr4_1:24765500-24765519 | Msa0541220:intron | 40.0% | |
| ATTACAAGTCAGCAACAGCT+TGG | + | chr4_1:24765555-24765574 | Msa0541220:intron | 40.0% | |
| GCTTCTTAACTTATGCTCCA+AGG | + | chr4_1:24765975-24765994 | Msa0541220:intron | 40.0% | |
| ! | GGTCTTCTTTTCTGTTGTGT+TGG | + | chr4_1:24766137-24766156 | Msa0541220:intron | 40.0% |
| ! | TTTCAGTGTTGCTCCAATGA+TGG | + | chr4_1:24766165-24766184 | Msa0541220:intron | 40.0% |
| TGAAAGAGTGAAAGTGAAGG+GGG | + | chr4_1:24766335-24766354 | Msa0541220:intron | 40.0% | |
| TGAACTAGAGCAGAACTTGA+TGG | + | chr4_1:24766514-24766533 | Msa0541220:intron | 40.0% | |
| TTCTGCTCAGGATAGATTCT+TGG | + | chr4_1:24766605-24766624 | Msa0541220:intron | 40.0% | |
| AAGCACAATGGGATGTTGTT+CGG | - | chr4_1:24766640-24766659 | None:intergenic | 40.0% | |
| CATCCCATTGTGCTTCAAAT+TGG | + | chr4_1:24766645-24766664 | Msa0541220:CDS | 40.0% | |
| ! | CCTCCAATTTGAAGCACAAT+GGG | - | chr4_1:24766651-24766670 | None:intergenic | 40.0% |
| CCATTGTGCTTCAAATTGGA+GGG | + | chr4_1:24766649-24766668 | Msa0541220:CDS | 40.0% | |
| ! | AGCGACGATTTTCTAACCTT+CGG | - | chr4_1:24766899-24766918 | None:intergenic | 40.0% |
| ATTCGACATTTGACACTGAC+AGG | - | chr4_1:24767058-24767077 | None:intergenic | 40.0% | |
| GTCAGTGTCAAATGTCGAAT+TGG | + | chr4_1:24767058-24767077 | Msa0541220:CDS | 40.0% | |
| TGTCAAATGTCGAATTGGTG+TGG | + | chr4_1:24767063-24767082 | Msa0541220:CDS | 40.0% | |
| ! | CATCTTTTCCCACACCAATT+AGG | - | chr4_1:24767448-24767467 | None:intergenic | 40.0% |
| CTAATTGGTGTGGGAAAAGA+TGG | + | chr4_1:24767446-24767465 | Msa0541220:intron | 40.0% | |
| !! | TGGGAAAAGATGGTGGAAAA+GGG | + | chr4_1:24767456-24767475 | Msa0541220:intron | 40.0% |
| AGTAAGGAGAGTAGATCACA+TGG | + | chr4_1:24767524-24767543 | Msa0541220:intron | 40.0% | |
| CAATATAGTATCATTGGGGG+AGG | + | chr4_1:24767785-24767804 | Msa0541220:intron | 40.0% | |
| ! | TGGCCATGTTTTACCACAAA+GGG | - | chr4_1:24767918-24767937 | None:intergenic | 40.0% |
| ! | TTGGCCATGTTTTACCACAA+AGG | - | chr4_1:24767919-24767938 | None:intergenic | 40.0% |
| TATTGCTTCTGAACCCTTTG+TGG | + | chr4_1:24767945-24767964 | Msa0541220:intron | 40.0% | |
| TCCAGGTGAATTCATATCCA+CGG | + | chr4_1:24768260-24768279 | Msa0541220:intron | 40.0% | |
| ! | GGAATACTCCTATTTTCAGC+TGG | - | chr4_1:24768354-24768373 | None:intergenic | 40.0% |
| !! | AGGCATTACTAGTGTTGATG+AGG | + | chr4_1:24768576-24768595 | Msa0541220:CDS | 40.0% |
| ! | TCTTTCTTGGCCTGTTTTCA+CGG | + | chr4_1:24768715-24768734 | Msa0541220:intron | 40.0% |
| AAATTGCATGGTCAAAAGGG+GGG | - | chr4_1:24768838-24768857 | None:intergenic | 40.0% | |
| !! | GTTGCTTTATTTCAGGAACC+AGG | + | chr4_1:24768871-24768890 | Msa0541220:intron | 40.0% |
| ! | TTGATAATCTCTACAGCCCT+TGG | + | chr4_1:24769062-24769081 | Msa0541220:intron | 40.0% |
| ATTTATGGTGCACAAAGCTG+TGG | + | chr4_1:24769112-24769131 | Msa0541220:CDS | 40.0% | |
| TCAGGTTCATTTACACTGCT+TGG | + | chr4_1:24769147-24769166 | Msa0541220:intron | 40.0% | |
| ATATGTAGTCTATGGGGACT+CGG | + | chr4_1:24769263-24769282 | Msa0541220:CDS | 40.0% | |
| !!! | AATTTTTTCCATTCAGCGCC+TGG | + | chr4_1:24769993-24770012 | Msa0541220:CDS | 40.0% |
| !!! | ATTTTTTCCATTCAGCGCCT+GGG | + | chr4_1:24769994-24770013 | Msa0541220:CDS | 40.0% |
| !!! | TGCTGCTTTTCGAAATTGCA+AGG | + | chr4_1:24770043-24770062 | Msa0541220:CDS | 40.0% |
| ! | GTGCCATTCCTATTTATGGA+TGG | + | chr4_1:24770196-24770215 | Msa0541220:intron | 40.0% |
| GCACCTTACCATCCATAAAT+AGG | - | chr4_1:24770207-24770226 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr4_1:24770407-24770426 | Msa0541220:intron | 40.0% | |
| CTTAATCATCCATGAGTGCA+TGG | + | chr4_1:24770656-24770675 | Msa0541220:intron | 40.0% | |
| AGTCTTAAACCATGCACTCA+TGG | - | chr4_1:24770668-24770687 | None:intergenic | 40.0% | |
| TTTGCAATGTTGCAGTAGCT+AGG | + | chr4_1:24770701-24770720 | Msa0541220:intron | 40.0% | |
| CATTGATGCAATTCCTGACT+CGG | + | chr4_1:24770855-24770874 | Msa0541220:CDS | 40.0% | |
| ! | GGTGTTGGATTCACCTATTT+CGG | + | chr4_1:24770876-24770895 | Msa0541220:CDS | 40.0% |
| GCCATACAAAACAAGAGAAG+AGG | + | chr4_1:24770954-24770973 | Msa0541220:CDS | 40.0% | |
| GAAGCTAAAGCAAAACACAG+TGG | + | chr4_1:24771145-24771164 | Msa0541220:three_prime_UTR | 40.0% | |
| GAAGTGAATGAGGAACAGAG+AGG | - | chr4_1:24764534-24764553 | None:intergenic | 45.0% | |
| TGTCTCAGGGATAACGATTC+AGG | + | chr4_1:24764578-24764597 | Msa0541220:five_prime_UTR | 45.0% | |
| CTTCTTCGAGAAAAACTCGC+CGG | - | chr4_1:24764774-24764793 | None:intergenic | 45.0% | |
| AGTACTCACCTAAACCAAGG+AGG | - | chr4_1:24764882-24764901 | None:intergenic | 45.0% | |
| ! | TCATGCTAACTTGTGCCCTA+TGG | + | chr4_1:24765837-24765856 | Msa0541220:intron | 45.0% |
| ! | CATGCTAACTTGTGCCCTAT+GGG | + | chr4_1:24765838-24765857 | Msa0541220:intron | 45.0% |
| ! | GAAATGCTAACTTGTGCCCT+TGG | - | chr4_1:24765995-24766014 | None:intergenic | 45.0% |
| TTGTCTGTCCAGTCCATCAT+TGG | - | chr4_1:24766181-24766200 | None:intergenic | 45.0% | |
| GCCTCATATCAAAGCATGCT+TGG | + | chr4_1:24766221-24766240 | Msa0541220:CDS | 45.0% | |
| GCCAAGCATGCTTTGATATG+AGG | - | chr4_1:24766225-24766244 | None:intergenic | 45.0% | |
| ! | TGTTTCTGCTGCAAGCATCT+CGG | - | chr4_1:24766254-24766273 | None:intergenic | 45.0% |
| GAAAGAGTGAAAGTGAAGGG+GGG | + | chr4_1:24766336-24766355 | Msa0541220:intron | 45.0% | |
| AGGGGGGAAAACGAACTAAA+AGG | + | chr4_1:24766352-24766371 | Msa0541220:intron | 45.0% | |
| GGGGGGAAAACGAACTAAAA+GGG | + | chr4_1:24766353-24766372 | Msa0541220:intron | 45.0% | |
| AGCACAATGGGATGTTGTTC+GGG | - | chr4_1:24766639-24766658 | None:intergenic | 45.0% | |
| CCCATTGTGCTTCAAATTGG+AGG | + | chr4_1:24766648-24766667 | Msa0541220:CDS | 45.0% | |
| ! | CCCTCCAATTTGAAGCACAA+TGG | - | chr4_1:24766652-24766671 | None:intergenic | 45.0% |
| ! | AAGTCTTATGCTTGACCCGA+AGG | + | chr4_1:24766880-24766899 | Msa0541220:CDS | 45.0% |
| ! | GCGACGATTTTCTAACCTTC+GGG | - | chr4_1:24766898-24766917 | None:intergenic | 45.0% |
| TTCTCTGTCTCCATGCTGAA+AGG | + | chr4_1:24767133-24767152 | Msa0541220:intron | 45.0% | |
| AACTTGACAGCCTTTCAGCA+TGG | - | chr4_1:24767146-24767165 | None:intergenic | 45.0% | |
| TGCTGAAAGGCTGTCAAGTT+TGG | + | chr4_1:24767146-24767165 | Msa0541220:intron | 45.0% | |
| ATTGGTGTGGGAAAAGATGG+TGG | + | chr4_1:24767449-24767468 | Msa0541220:intron | 45.0% | |
| !! | GTGGGAAAAGATGGTGGAAA+AGG | + | chr4_1:24767455-24767474 | Msa0541220:intron | 45.0% |
| !! | GGGAAAAGATGGTGGAAAAG+GGG | + | chr4_1:24767457-24767476 | Msa0541220:intron | 45.0% |
| AAAAGGGGCTTAGGTGGTTT+GGG | + | chr4_1:24767472-24767491 | Msa0541220:intron | 45.0% | |
| GCATGTAGAGAGAAGACCTT+TGG | + | chr4_1:24767494-24767513 | Msa0541220:intron | 45.0% | |
| AAGGAGAGTAGATCACATGG+AGG | + | chr4_1:24767527-24767546 | Msa0541220:intron | 45.0% | |
| GGAGGATTGTCAATCACTAG+AGG | + | chr4_1:24767545-24767564 | Msa0541220:intron | 45.0% | |
| TTGTCAATCACTAGAGGCAG+AGG | + | chr4_1:24767551-24767570 | Msa0541220:intron | 45.0% | |
| ! | AAGCCTTATCCCATGAAGTG+GGG | - | chr4_1:24767691-24767710 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCATGAAGT+GGG | - | chr4_1:24767692-24767711 | None:intergenic | 45.0% |
| ! | AGGCTTGGTTGTTGTTGTTG+TGG | + | chr4_1:24767705-24767724 | Msa0541220:intron | 45.0% |
| ! | GGCTTGGTTGTTGTTGTTGT+GGG | + | chr4_1:24767706-24767725 | Msa0541220:intron | 45.0% |
| ! | CCATGTTTTACCACAAAGGG+TGG | - | chr4_1:24767915-24767934 | None:intergenic | 45.0% |
| CCACCCTTTGTGGTAAAACA+TGG | + | chr4_1:24767912-24767931 | Msa0541220:intron | 45.0% | |
| ! | GTAGATAGGAGATAGTGGCT+GGG | - | chr4_1:24768007-24768026 | None:intergenic | 45.0% |
| ! | AGTAGATAGGAGATAGTGGC+TGG | - | chr4_1:24768008-24768027 | None:intergenic | 45.0% |
| ACCGTGGATATGAATTCACC+TGG | - | chr4_1:24768264-24768283 | None:intergenic | 45.0% | |
| GGGTGATAAAGAAGAAACCG+TGG | - | chr4_1:24768280-24768299 | None:intergenic | 45.0% | |
| GCATTAGCCCAGCTGAAAAT+AGG | + | chr4_1:24768343-24768362 | Msa0541220:CDS | 45.0% | |
| ! | CTTTCTTGGCCTGTTTTCAC+GGG | + | chr4_1:24768716-24768735 | Msa0541220:intron | 45.0% |
| ! | TTTCTTGGCCTGTTTTCACG+GGG | + | chr4_1:24768717-24768736 | Msa0541220:intron | 45.0% |
| TGTGCAAAATTGCTATGCGG+TGG | + | chr4_1:24769024-24769043 | Msa0541220:intron | 45.0% | |
| TACAGCCCTTGGCATGTATT+GGG | + | chr4_1:24769073-24769092 | Msa0541220:intron | 45.0% | |
| CATGTCCCAATACATGCCAA+GGG | - | chr4_1:24769081-24769100 | None:intergenic | 45.0% | |
| ACATGTCCCAATACATGCCA+AGG | - | chr4_1:24769082-24769101 | None:intergenic | 45.0% | |
| GACTCGGAGTTGGGAAAATA+TGG | + | chr4_1:24769279-24769298 | Msa0541220:CDS | 45.0% | |
| GGGAAGAGTAGATCAAATGG+CGG | + | chr4_1:24770382-24770401 | Msa0541220:intron | 45.0% | |
| AACGCCTTATCCCACTAAGT+GGG | - | chr4_1:24770548-24770567 | None:intergenic | 45.0% | |
| AATGTTGCAGTAGCTAGGTC+AGG | + | chr4_1:24770706-24770725 | Msa0541220:intron | 45.0% | |
| CGAGTCAGGAATTGCATCAA+TGG | - | chr4_1:24770857-24770876 | None:intergenic | 45.0% | |
| !!! | TCTCTTGTTTTGTATGGCGG+AGG | - | chr4_1:24770952-24770971 | None:intergenic | 45.0% |
| AGAGGTTGTTCTATGCGCAT+AGG | + | chr4_1:24770972-24770991 | Msa0541220:CDS | 45.0% | |
| ! | CTTGGTTTCTGAGAGTGCAA+GGG | - | chr4_1:24771000-24771019 | None:intergenic | 45.0% |
| ! | ACTTGGTTTCTGAGAGTGCA+AGG | - | chr4_1:24771001-24771020 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTATTGT+AGG | + | chr4_1:24764622-24764641 | Msa0541220:five_prime_UTR | 5.0% |
| !!! | TTAAATTCTATTTTAATATA+TGG | + | chr4_1:24765282-24765301 | Msa0541220:intron | 5.0% |
| !! | TATATATATATATCATTATA+TGG | - | chr4_1:24767237-24767256 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAACAAAA+TGG | + | chr4_1:24769612-24769631 | Msa0541220:intron | 5.0% |
| !!! | ACTATTTTATTTTTAAATAT+CGG | + | chr4_1:24769841-24769860 | Msa0541220:intron | 5.0% |
| AGTAGAACACGCGTTGTCAG+TGG | + | chr4_1:24765004-24765023 | Msa0541220:intron | 50.0% | |
| TGTGGCAACTGGCAATATGG+TGG | + | chr4_1:24765111-24765130 | Msa0541220:intron | 50.0% | |
| GTGGCAACTGGCAATATGGT+GGG | + | chr4_1:24765112-24765131 | Msa0541220:intron | 50.0% | |
| ! | CTCCTTAGCTTGAGCCCATA+GGG | - | chr4_1:24765855-24765874 | None:intergenic | 50.0% |
| ! | ACTCCTTAGCTTGAGCCCAT+AGG | - | chr4_1:24765856-24765875 | None:intergenic | 50.0% |
| ! | AGTCGTAGGGCGCTAATAAG+AGG | - | chr4_1:24766081-24766100 | None:intergenic | 50.0% |
| !! | GTGTTGCTCCAATGATGGAC+TGG | + | chr4_1:24766170-24766189 | Msa0541220:intron | 50.0% |
| GTCCAGCTACTCTTGGACTT+GGG | - | chr4_1:24766844-24766863 | None:intergenic | 50.0% | |
| TGTCCAGCTACTCTTGGACT+TGG | - | chr4_1:24766845-24766864 | None:intergenic | 50.0% | |
| AGTCCAAGAGTAGCTGGACA+TGG | + | chr4_1:24766845-24766864 | Msa0541220:CDS | 50.0% | |
| GTCCAAGAGTAGCTGGACAT+GGG | + | chr4_1:24766846-24766865 | Msa0541220:CDS | 50.0% | |
| !! | AGATGGTGGAAAAGGGGCTT+AGG | + | chr4_1:24767463-24767482 | Msa0541220:intron | 50.0% |
| GAAAAGGGGCTTAGGTGGTT+TGG | + | chr4_1:24767471-24767490 | Msa0541220:intron | 50.0% | |
| !! | ATGAAGTGGGGTTGGCTACA+TGG | - | chr4_1:24767679-24767698 | None:intergenic | 50.0% |
| ATGTAGCCAACCCCACTTCA+TGG | + | chr4_1:24767678-24767697 | Msa0541220:intron | 50.0% | |
| TGTAGCCAACCCCACTTCAT+GGG | + | chr4_1:24767679-24767698 | Msa0541220:intron | 50.0% | |
| CTTATCCCATGAAGTGGGGT+TGG | - | chr4_1:24767687-24767706 | None:intergenic | 50.0% | |
| CAACCCCACTTCATGGGATA+AGG | + | chr4_1:24767685-24767704 | Msa0541220:intron | 50.0% | |
| ! | CCAAGCCTTATCCCATGAAG+TGG | - | chr4_1:24767693-24767712 | None:intergenic | 50.0% |
| CCACTTCATGGGATAAGGCT+TGG | + | chr4_1:24767690-24767709 | Msa0541220:intron | 50.0% | |
| !!! | TGGGGGAGGAGTTTTGTTCT+TGG | + | chr4_1:24767799-24767818 | Msa0541220:intron | 50.0% |
| TTTGGTAGGACCACCCTTTG+TGG | + | chr4_1:24767902-24767921 | Msa0541220:intron | 50.0% | |
| TGAGCAGTGCCTTCCTTGAA+TGG | - | chr4_1:24768320-24768339 | None:intergenic | 50.0% | |
| !! | TCAAGGAAGGCACTGCTCAA+TGG | + | chr4_1:24768321-24768340 | Msa0541220:CDS | 50.0% |
| ACCAAAGTCCCCGTGAAAAC+AGG | - | chr4_1:24768728-24768747 | None:intergenic | 50.0% | |
| TTCACGGGGACTTTGGTTGT+AGG | + | chr4_1:24768731-24768750 | Msa0541220:intron | 50.0% | |
| TCAATGCAGCACGAGATGCT+GGG | + | chr4_1:24768754-24768773 | Msa0541220:CDS | 50.0% | |
| CTACAGCCCTTGGCATGTAT+TGG | + | chr4_1:24769072-24769091 | Msa0541220:intron | 50.0% | |
| TTCACGATGTCTCGCACAGT+TGG | - | chr4_1:24769312-24769331 | None:intergenic | 50.0% | |
| AACTGTGCGAGACATCGTGA+AGG | + | chr4_1:24769311-24769330 | Msa0541220:CDS | 50.0% | |
| ACATGCAAATGCAAGGGGTG+AGG | - | chr4_1:24769884-24769903 | None:intergenic | 50.0% | |
| GGCTGCAGTGATAACAGACA+TGG | - | chr4_1:24769966-24769985 | None:intergenic | 50.0% | |
| GGATGGTAAGGTGCATGCTA+CGG | + | chr4_1:24770213-24770232 | Msa0541220:intron | 50.0% | |
| ! | AGATCAAATGGCGGAGAGTC+AGG | + | chr4_1:24770391-24770410 | Msa0541220:intron | 50.0% |
| GCGGAGAGTCAGGTTAAAAG+AGG | + | chr4_1:24770401-24770420 | Msa0541220:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_1:24770543-24770562 | None:intergenic | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | - | chr4_1:24770547-24770566 | None:intergenic | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | - | chr4_1:24770549-24770568 | None:intergenic | 50.0% | |
| !! | TGCAATTCCTGACTCGGTGT+TGG | + | chr4_1:24770861-24770880 | Msa0541220:CDS | 50.0% |
| CCAAGAGGTGGTTCCGAAAT+AGG | - | chr4_1:24770892-24770911 | None:intergenic | 50.0% | |
| CCTATTTCGGAACCACCTCT+TGG | + | chr4_1:24770889-24770908 | Msa0541220:CDS | 50.0% | |
| AAAAGATCTGTGCGGCCAAG+AGG | - | chr4_1:24770907-24770926 | None:intergenic | 50.0% | |
| GGCGACTCATGAGTCATGTA+AGG | + | chr4_1:24771228-24771247 | Msa0541220:intron | 50.0% | |
| TGCCCTATGGGCTCAAGCTA+AGG | + | chr4_1:24765850-24765869 | Msa0541220:intron | 55.0% | |
| ! | GTCGTAGGGCGCTTGCAAAT+TGG | - | chr4_1:24766032-24766051 | None:intergenic | 55.0% |
| TGCCCAAGTCCAAGAGTAGC+TGG | + | chr4_1:24766839-24766858 | Msa0541220:CDS | 55.0% | |
| GACCCATGTCCAGCTACTCT+TGG | - | chr4_1:24766851-24766870 | None:intergenic | 55.0% | |
| GTAGCTGGACATGGGTCCTT+TGG | + | chr4_1:24766854-24766873 | Msa0541220:CDS | 55.0% | |
| TGGTGGAAAAGGGGCTTAGG+TGG | + | chr4_1:24767466-24767485 | Msa0541220:intron | 55.0% | |
| ! | GCCTGTTTTCACGGGGACTT+TGG | + | chr4_1:24768724-24768743 | Msa0541220:intron | 55.0% |
| GTCAATGCAGCACGAGATGC+TGG | + | chr4_1:24768753-24768772 | Msa0541220:CDS | 55.0% | |
| CAATGCAGCACGAGATGCTG+GGG | + | chr4_1:24768755-24768774 | Msa0541220:CDS | 55.0% | |
| !! | GGGGCGCATGGTGTTATGAT+TGG | + | chr4_1:24768774-24768793 | Msa0541220:CDS | 55.0% |
| ! | CTGTGGTCTTACACGTCGTC+AGG | + | chr4_1:24769129-24769148 | Msa0541220:CDS | 55.0% |
| AGTCTATGGGGACTCGGAGT+TGG | + | chr4_1:24769269-24769288 | Msa0541220:CDS | 55.0% | |
| GTCTATGGGGACTCGGAGTT+GGG | + | chr4_1:24769270-24769289 | Msa0541220:CDS | 55.0% | |
| TGTGCGAGACATCGTGAAGG+TGG | + | chr4_1:24769314-24769333 | Msa0541220:intron | 55.0% | |
| GTGCGAGACATCGTGAAGGT+GGG | + | chr4_1:24769315-24769334 | Msa0541220:intron | 55.0% | |
| CGCTTACGCATGTGCCCTAA+GGG | - | chr4_1:24769547-24769566 | None:intergenic | 55.0% | |
| GCAAATGCAAGGGGTGAGGA+GGG | - | chr4_1:24769880-24769899 | None:intergenic | 55.0% | |
| TGCAAATGCAAGGGGTGAGG+AGG | - | chr4_1:24769881-24769900 | None:intergenic | 55.0% | |
| TTCCATTCAGCGCCTGGGAA+TGG | + | chr4_1:24769999-24770018 | Msa0541220:CDS | 55.0% | |
| ! | TGGACAGTGGAAGCGCAATG+CGG | + | chr4_1:24770019-24770038 | Msa0541220:CDS | 55.0% |
| TGGTAAGGTGCATGCTACGG+TGG | + | chr4_1:24770216-24770235 | Msa0541220:intron | 55.0% | |
| AGGTGCATGCTACGGTGGTA+TGG | + | chr4_1:24770221-24770240 | Msa0541220:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr4_1:24770535-24770554 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr4_1:24770534-24770553 | Msa0541220:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr4_1:24770535-24770554 | Msa0541220:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4_1:24770541-24770560 | Msa0541220:intron | 55.0% | |
| GGTGAATCCAACACCGAGTC+AGG | - | chr4_1:24770871-24770890 | None:intergenic | 55.0% | |
| GCGCTTACGCATGTGCCCTA+AGG | - | chr4_1:24769548-24769567 | None:intergenic | 60.0% | |
| !! | GTCCATTCCCAGGCGCTGAA+TGG | - | chr4_1:24770004-24770023 | None:intergenic | 60.0% |
| CGCTTCCACTGTCCATTCCC+AGG | - | chr4_1:24770014-24770033 | None:intergenic | 60.0% | |
| AGATCTGTGCGGCCAAGAGG+TGG | - | chr4_1:24770904-24770923 | None:intergenic | 60.0% | |
| CAGCGCCTGGGAATGGACAG+TGG | + | chr4_1:24770006-24770025 | Msa0541220:CDS | 65.0% | |
| GCACGAGATGCTGGGGCGCA+TGG | + | chr4_1:24768762-24768781 | Msa0541220:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 24764497 | 24771308 | 24764497 | ID=Msa0541220;Name=Msa0541220 |
| chr4_1 | mRNA | 24764497 | 24771308 | 24764497 | ID=Msa0541220-mRNA-1;Parent=Msa0541220;Name=Msa0541220-mRNA-1;_AED=0.12;_eAED=0.12;_QI=172|1|1|1|0.84|0.71|14|294|430 |
| chr4_1 | exon | 24764497 | 24764529 | 24764497 | ID=Msa0541220-mRNA-1:exon:6709;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24764551 | 24764892 | 24764551 | ID=Msa0541220-mRNA-1:exon:6710;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24766171 | 24766297 | 24766171 | ID=Msa0541220-mRNA-1:exon:6711;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24766615 | 24766742 | 24766615 | ID=Msa0541220-mRNA-1:exon:6712;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24766832 | 24766901 | 24766832 | ID=Msa0541220-mRNA-1:exon:6713;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24767010 | 24767112 | 24767010 | ID=Msa0541220-mRNA-1:exon:6714;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24768265 | 24768382 | 24768265 | ID=Msa0541220-mRNA-1:exon:6715;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24768516 | 24768597 | 24768516 | ID=Msa0541220-mRNA-1:exon:6716;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24768753 | 24768814 | 24768753 | ID=Msa0541220-mRNA-1:exon:6717;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24769078 | 24769150 | 24769078 | ID=Msa0541220-mRNA-1:exon:6718;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24769252 | 24769332 | 24769252 | ID=Msa0541220-mRNA-1:exon:6719;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24769984 | 24770064 | 24769984 | ID=Msa0541220-mRNA-1:exon:6720;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24770829 | 24771228 | 24770829 | ID=Msa0541220-mRNA-1:exon:6721;Parent=Msa0541220-mRNA-1 |
| chr4_1 | exon | 24771250 | 24771308 | 24771250 | ID=Msa0541220-mRNA-1:exon:6722;Parent=Msa0541220-mRNA-1 |
| chr4_1 | five_prime_UTR | 24764497 | 24764529 | 24764497 | ID=Msa0541220-mRNA-1:five_prime_utr;Parent=Msa0541220-mRNA-1 |
| chr4_1 | five_prime_UTR | 24764551 | 24764689 | 24764551 | ID=Msa0541220-mRNA-1:five_prime_utr;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24764690 | 24764892 | 24764690 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24766171 | 24766297 | 24766171 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24766615 | 24766742 | 24766615 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24766832 | 24766901 | 24766832 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24767010 | 24767112 | 24767010 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24768265 | 24768382 | 24768265 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24768516 | 24768597 | 24768516 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24768753 | 24768814 | 24768753 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24769078 | 24769150 | 24769078 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24769252 | 24769332 | 24769252 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24769984 | 24770064 | 24769984 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | CDS | 24770829 | 24770993 | 24770829 | ID=Msa0541220-mRNA-1:cds;Parent=Msa0541220-mRNA-1 |
| chr4_1 | three_prime_UTR | 24770994 | 24771228 | 24770994 | ID=Msa0541220-mRNA-1:three_prime_utr;Parent=Msa0541220-mRNA-1 |
| chr4_1 | three_prime_UTR | 24771250 | 24771308 | 24771250 | ID=Msa0541220-mRNA-1:three_prime_utr;Parent=Msa0541220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
