AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092390 MtrunA17_Chr3g0115281 91.803 305 19 2 1 300 1 304 0.0 536
Msa0092390 MtrunA17_Chr7g0254481 45.249 221 117 2 63 279 84 304 4.66e-59 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092390 AT1G36390.1 47.893 261 114 4 31 286 31 274 1.01e-70 220
Msa0092390 AT1G36390.2 47.893 261 114 4 31 286 31 274 1.01e-70 220
Msa0092390 AT5G17710.3 47.895 190 99 0 90 279 113 302 4.62e-55 181
Msa0092390 AT5G17710.1 47.895 190 99 0 90 279 113 302 4.62e-55 181
Msa0092390 AT5G17710.2 47.895 190 99 0 90 279 115 304 5.67e-55 181

Find 92 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTTTCATCATTGAAAA+AGG 0.177252 1_2:-74806126 Msa0092390:three_prime_UTR
TTTCAAGAAAGAACAATTTC+TGG 0.178679 1_2:+74806046 None:intergenic
TGAACGAAATTGGGCGGTTT+TGG 0.192297 1_2:+74808485 None:intergenic
GATAGTGTTGGAGGCGTAAA+AGG 0.207213 1_2:+74808448 None:intergenic
ACAAGATTTACCAAGCTTAT+TGG 0.223350 1_2:-74808136 Msa0092390:CDS
TAACTTACCAAAGGATTAAA+AGG 0.227686 1_2:+74807700 None:intergenic
AGATGGAAAATGAACGAAAT+TGG 0.243655 1_2:+74808475 None:intergenic
CTTTCTTGTATGCTTTAATA+AGG 0.254294 1_2:+74808112 None:intergenic
TGAGGAGTCCGAAGTGTTTA+AGG 0.256357 1_2:-74806474 Msa0092390:CDS
TACACTTGAAAAGGAATCTT+TGG 0.266699 1_2:+74808382 None:intergenic
GAAATGCTTCTGTTGTTCTA+TGG 0.299320 1_2:-74806208 Msa0092390:three_prime_UTR
TACGCCTCCAACACTATCTT+GGG 0.323136 1_2:-74808443 Msa0092390:CDS
GTTTGTTGGTTGGTAATTAC+TGG 0.331283 1_2:+74808636 None:intergenic
GAAGCGAAGAGGGAGGAGAT+TGG 0.344456 1_2:+74808404 None:intergenic
TTGATGGCTGCTCCAAGGAC+TGG 0.358588 1_2:+74806333 None:intergenic
TACAAGAAAGCCTTTCTTAA+CGG 0.370413 1_2:-74808099 Msa0092390:CDS
TCAGAAAGTATCTAGTTTAT+CGG 0.373978 1_2:-74808007 Msa0092390:CDS
TCAATTCTAGCAGCTGTTGA+TGG 0.374139 1_2:+74806317 None:intergenic
TTACGCCTCCAACACTATCT+TGG 0.379201 1_2:-74808444 Msa0092390:CDS
CTTTCTATCGCCGTTAAGAA+AGG 0.383363 1_2:+74808089 None:intergenic
TCTCTCGAATCAATCTCTAT+TGG 0.404166 1_2:-74808552 Msa0092390:CDS
GGATTTATGCAAGGTGCATA+AGG 0.409734 1_2:-74808669 Msa0092390:five_prime_UTR
GAGTGCCTGACAAAATATTA+AGG 0.411237 1_2:+74805935 None:intergenic
GCACTTGTGAAGGTTTCCTT+AGG 0.414176 1_2:-74806389 Msa0092390:CDS
TAATTTCTGTATTAACGAAC+GGG 0.419446 1_2:+74808590 None:intergenic
AGCAATTTGTAGAGACTTTG+AGG 0.424003 1_2:-74807759 Msa0092390:CDS
CCTAGTTCCACCTGCTTACC+TGG 0.428365 1_2:-74806252 Msa0092390:three_prime_UTR
AGTGGCATCTACCCAGTCCT+TGG 0.435806 1_2:-74806345 Msa0092390:CDS
GATGGAAAATGAACGAAATT+GGG 0.447787 1_2:+74808476 None:intergenic
TCTGTTGTTCTATGGTATGT+TGG 0.451289 1_2:-74806200 Msa0092390:three_prime_UTR
AGGTTTCTTGCTCAAAGATA+AGG 0.453331 1_2:-74806423 Msa0092390:CDS
GTGAAGGTTTCCTTAGGTCC+CGG 0.454329 1_2:-74806383 Msa0092390:CDS
TGCTCAAAGATAAGGTTGTA+AGG 0.460819 1_2:-74806415 Msa0092390:CDS
GAGGAGATTGGATTGAGAGT+TGG 0.467807 1_2:+74808416 None:intergenic
ATGTTGTGGAAGTTGTTTGT+TGG 0.467990 1_2:+74808622 None:intergenic
CCAGGTAAGCAGGTGGAACT+AGG 0.468157 1_2:+74806252 None:intergenic
AACTCTACGCATCAAAATCA+TGG 0.470462 1_2:+74806006 None:intergenic
GAGAGAGCGTACACTTGAAA+AGG 0.470698 1_2:+74808373 None:intergenic
GGAAAGAATTAGCATTCAAT+CGG 0.485047 1_2:-74807908 Msa0092390:CDS
TGATGGCTGCTCCAAGGACT+GGG 0.486960 1_2:+74806334 None:intergenic
GTGTAGGAAGCAATTATGTT+GGG 0.499354 1_2:-74808690 None:intergenic
ATAGTGTTGGAGGCGTAAAA+GGG 0.500197 1_2:+74808449 None:intergenic
ATCATAGACTATACTCACTT+GGG 0.505532 1_2:+74806176 None:intergenic
ACAACAGATTGAAGCGGAAA+CGG 0.508186 1_2:-74807824 Msa0092390:CDS
TATCAAAATCCGCTTGCAAA+CGG 0.510414 1_2:+74807953 None:intergenic
GGTGTAGGAAGCAATTATGT+TGG 0.513567 1_2:-74808691 None:intergenic
AAGGAAACCTTCACAAGTGC+TGG 0.513889 1_2:+74806392 None:intergenic
TGTGGAAGTTGTTTGTTGGT+TGG 0.515497 1_2:+74808626 None:intergenic
TTAATAAGGACCAATAAGCT+TGG 0.526487 1_2:+74808126 None:intergenic
TAACAAGATACCAGGTAAGC+AGG 0.530415 1_2:+74806242 None:intergenic
TGAAGGTTTCCTTAGGTCCC+GGG 0.534603 1_2:-74806382 Msa0092390:CDS
ATAATTTCTGTATTAACGAA+CGG 0.537744 1_2:+74808589 None:intergenic
TACAATCAAAAGCAATTGAA+AGG 0.537877 1_2:-74808041 Msa0092390:CDS
GGAATCTTTGGAAGCGAAGA+GGG 0.541715 1_2:+74808394 None:intergenic
GAGTCCGAAGTGTTTAAGGA+AGG 0.560329 1_2:-74806470 Msa0092390:CDS
ATGATAAAACAGACGAGACT+CGG 0.560686 1_2:-74808173 Msa0092390:CDS
GAGGAGTCATCATGTTTCTG+TGG 0.562710 1_2:-74807740 Msa0092390:CDS
GTTTCTGTGGTAGCTACAGT+TGG 0.563597 1_2:-74807727 Msa0092390:CDS
AATCCCTTCCTTAAACACTT+CGG 0.563851 1_2:+74806466 None:intergenic
TGTATTAACGAACGGGACGG+AGG 0.564312 1_2:+74808597 None:intergenic
AGGAATCTTTGGAAGCGAAG+AGG 0.565783 1_2:+74808393 None:intergenic
TATCATAGACTATACTCACT+TGG 0.567328 1_2:+74806175 None:intergenic
TGTAAGGCCAGCACTTGTGA+AGG 0.574016 1_2:-74806399 Msa0092390:CDS
GAGGCGTAAAAGGGGCGAGA+TGG 0.577768 1_2:+74808458 None:intergenic
AGCTGTTGATGGCTGCTCCA+AGG 0.578183 1_2:+74806328 None:intergenic
TTTGAGCAAGAAACCTCGAC+GGG 0.582305 1_2:+74806430 None:intergenic
AAACCCCAAGATAGTGTTGG+AGG 0.582311 1_2:+74808439 None:intergenic
ACATGAAGCCGTTGGACGTG+AGG 0.584494 1_2:-74806492 Msa0092390:CDS
ATTATGTTGGGATTTATGCA+AGG 0.588887 1_2:-74808678 Msa0092390:five_prime_UTR
GCAATATCTCCGTTTGCAAG+CGG 0.589266 1_2:-74807962 Msa0092390:CDS
AGTCCGAAGTGTTTAAGGAA+GGG 0.590140 1_2:-74806469 Msa0092390:CDS
TGGAAACCCCAAGATAGTGT+TGG 0.598052 1_2:+74808436 None:intergenic
GTATTAACGAACGGGACGGA+GGG 0.600955 1_2:+74808598 None:intergenic
CTTTAGGAAAAGATGTGAGA+AGG 0.603142 1_2:-74807929 Msa0092390:CDS
TTGGTTGGTAATTACTGGAG+CGG 0.605396 1_2:+74808641 None:intergenic
TTGCAGATACATGAAGCCGT+TGG 0.609028 1_2:-74806500 Msa0092390:intron
TTCGGACTCCTCACGTCCAA+CGG 0.617680 1_2:+74806484 None:intergenic
AGTTAAACAACAGATTGAAG+CGG 0.621582 1_2:-74807830 Msa0092390:CDS
ATCTTTGGAAGCGAAGAGGG+AGG 0.628356 1_2:+74808397 None:intergenic
ACGCCTCCAACACTATCTTG+GGG 0.631610 1_2:-74808442 Msa0092390:CDS
GAAAGTATCTAGTTTATCGG+CGG 0.637283 1_2:-74808004 Msa0092390:CDS
TTTAGCAATAACAAGATACC+AGG 0.638195 1_2:+74806234 None:intergenic
TCATAGACTATACTCACTTG+GGG 0.638405 1_2:+74806177 None:intergenic
GGAAAATGAACGAAATTGGG+CGG 0.641924 1_2:+74808479 None:intergenic
CTTTGAGCAAGAAACCTCGA+CGG 0.642365 1_2:+74806429 None:intergenic
TTCTGTATTAACGAACGGGA+CGG 0.644353 1_2:+74808594 None:intergenic
TTAATACAGAAATTATACAA+TGG 0.659818 1_2:-74808582 Msa0092390:exon
CAAGATACCAGGTAAGCAGG+TGG 0.662145 1_2:+74806245 None:intergenic
TATTTCTTCAATCAACAATG+CGG 0.663325 1_2:+74808065 None:intergenic
TAGTGTTGGAGGCGTAAAAG+GGG 0.663351 1_2:+74808450 None:intergenic
ACGGGACGGAGGGTATGTTG+TGG 0.665197 1_2:+74808608 None:intergenic
ATAATTAAAGAATCCCGTCG+AGG 0.675021 1_2:-74806443 Msa0092390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACTATATTTCTTTTTTA+GGG + chr1_2:74807456-74807475 None:intergenic 10.0%
!!! AAATACTATATTTCTTTTTT+AGG + chr1_2:74807457-74807476 None:intergenic 10.0%
!! TAAAAAAGAAATATAGTATT+TGG - chr1_2:74807456-74807475 Msa0092390:intron 10.0%
!! TGAAAAATTTATGAATTTAT+TGG - chr1_2:74808541-74808560 Msa0092390:CDS 10.0%
!! TTAATACAGAAATTATACAA+TGG - chr1_2:74806046-74806065 Msa0092390:three_prime_UTR 15.0%
!!! ATACTATATTTCTTTTTTAG+GGG + chr1_2:74807455-74807474 None:intergenic 15.0%
!!! AACAAATTAGTTTTTTTGTT+TGG - chr1_2:74807585-74807604 Msa0092390:intron 15.0%
!!! ACAAATTAGTTTTTTTGTTT+GGG - chr1_2:74807586-74807605 Msa0092390:intron 15.0%
!!! AAAAACTGTAATTTGTAATT+TGG + chr1_2:74807745-74807764 None:intergenic 15.0%
!! ATAATTTCTGTATTAACGAA+CGG + chr1_2:74806042-74806061 None:intergenic 20.0%
!!! TTTCAAATTTAACTTACCAA+AGG + chr1_2:74806940-74806959 None:intergenic 20.0%
!!! TTTTGTTTGGGAATTTTATA+CGG - chr1_2:74807598-74807617 Msa0092390:intron 20.0%
!! AAATTAAACAATAGCAATGT+AGG + chr1_2:74808090-74808109 None:intergenic 20.0%
!!! GCTATTGTTTAATTTGTTTT+TGG - chr1_2:74808095-74808114 Msa0092390:CDS 20.0%
! TAATTTCTGTATTAACGAAC+GGG + chr1_2:74806041-74806060 None:intergenic 25.0%
! CTTTCTTGTATGCTTTAATA+AGG + chr1_2:74806519-74806538 None:intergenic 25.0%
! TATTTCTTCAATCAACAATG+CGG + chr1_2:74806566-74806585 None:intergenic 25.0%
! TACAATCAAAAGCAATTGAA+AGG - chr1_2:74806587-74806606 Msa0092390:intron 25.0%
!!! TCAGAAAGTATCTAGTTTAT+CGG - chr1_2:74806621-74806640 Msa0092390:intron 25.0%
! CATTAAAAAACTTCTGTTGA+TGG - chr1_2:74806759-74806778 Msa0092390:intron 25.0%
! TAACTTACCAAAGGATTAAA+AGG + chr1_2:74806931-74806950 None:intergenic 25.0%
! CTGATTTAAATATCGATACA+AGG + chr1_2:74806966-74806985 None:intergenic 25.0%
! TTGTTCTATAATATGCTATG+TGG + chr1_2:74807123-74807142 None:intergenic 25.0%
! AGCATATTATAGAACAATAG+CGG - chr1_2:74807126-74807145 Msa0092390:intron 25.0%
! ATTATGGATTTATGACTGTA+AGG - chr1_2:74807324-74807343 Msa0092390:intron 25.0%
!! CTTTTAGTATCTTAAAATCG+TGG + chr1_2:74807376-74807395 None:intergenic 25.0%
!!! AGATGAGATGTTATTTGTTT+TGG - chr1_2:74807402-74807421 Msa0092390:intron 25.0%
!!! GAAAAATGTTTTTGCAAGAA+TGG - chr1_2:74807552-74807571 Msa0092390:intron 25.0%
!! TTTGTTTGGGAATTTTATAC+GGG - chr1_2:74807599-74807618 Msa0092390:intron 25.0%
!!! CTGTTTTTATGTTATGTCTA+AGG - chr1_2:74807697-74807716 Msa0092390:intron 25.0%
!! ATCAAATGACCTTTTCTTTA+TGG - chr1_2:74807776-74807795 Msa0092390:CDS 25.0%
! TCAAATTAGCCATAAAGAAA+AGG + chr1_2:74807788-74807807 None:intergenic 25.0%
! TTTATGGCTAATTTGATTGT+TGG - chr1_2:74807792-74807811 Msa0092390:CDS 25.0%
!!! TAGTTTTCAAGCATATAATG+TGG + chr1_2:74808007-74808026 None:intergenic 25.0%
! TATGCTTGAAAACTAAAATG+TGG - chr1_2:74808012-74808031 Msa0092390:CDS 25.0%
! TTTCGTTTCATCATTGAAAA+AGG - chr1_2:74808502-74808521 Msa0092390:CDS 25.0%
! TTCGTTTCATCATTGAAAAA+GGG - chr1_2:74808503-74808522 Msa0092390:CDS 25.0%
! TTTCAAGAAAGAACAATTTC+TGG + chr1_2:74808585-74808604 None:intergenic 25.0%
ATTATGTTGGGATTTATGCA+AGG - chr1_2:74805950-74805969 Msa0092390:three_prime_UTR 30.0%
GATGGAAAATGAACGAAATT+GGG + chr1_2:74806155-74806174 None:intergenic 30.0%
AGATGGAAAATGAACGAAAT+TGG + chr1_2:74806156-74806175 None:intergenic 30.0%
TACACTTGAAAAGGAATCTT+TGG + chr1_2:74806249-74806268 None:intergenic 30.0%
!! CTTATTTTCATAAGCTCTTG+GGG + chr1_2:74806380-74806399 None:intergenic 30.0%
!! GCTTATTTTCATAAGCTCTT+GGG + chr1_2:74806381-74806400 None:intergenic 30.0%
!! AGCTTATTTTCATAAGCTCT+TGG + chr1_2:74806382-74806401 None:intergenic 30.0%
ACAAGATTTACCAAGCTTAT+TGG - chr1_2:74806492-74806511 Msa0092390:CDS 30.0%
TTAATAAGGACCAATAAGCT+TGG + chr1_2:74806505-74806524 None:intergenic 30.0%
TACAAGAAAGCCTTTCTTAA+CGG - chr1_2:74806529-74806548 Msa0092390:intron 30.0%
!! AAGCGGATTTTGATAACTTT+AGG - chr1_2:74806683-74806702 Msa0092390:intron 30.0%
GGAAAGAATTAGCATTCAAT+CGG - chr1_2:74806720-74806739 Msa0092390:intron 30.0%
! TAAAAAACTTCTGTTGATGG+TGG - chr1_2:74806762-74806781 Msa0092390:intron 30.0%
AGTTAAACAACAGATTGAAG+CGG - chr1_2:74806798-74806817 Msa0092390:intron 30.0%
TTGTCAAACAACTTCTATAG+TGG + chr1_2:74807091-74807110 None:intergenic 30.0%
AATTTCATCACTCACTATCA+GGG + chr1_2:74807185-74807204 None:intergenic 30.0%
CAGATATTTGCTTGTGATTA+TGG - chr1_2:74807308-74807327 Msa0092390:intron 30.0%
!! GATTCGACAAAGTTTTATGT+TGG - chr1_2:74807492-74807511 Msa0092390:intron 30.0%
!! TGTTTTTGCAAGAATGGTTT+TGG - chr1_2:74807558-74807577 Msa0092390:intron 30.0%
!!! ATACATCTTACTTTTTCCTC+TGG - chr1_2:74807898-74807917 Msa0092390:CDS 30.0%
! AAGATATTTTCACTTTCCAG+AGG + chr1_2:74807917-74807936 None:intergenic 30.0%
!! CTTGTTTTCCAATCATATCT+GGG - chr1_2:74807973-74807992 Msa0092390:CDS 30.0%
TCATCTAATATGCCTTCTAT+AGG + chr1_2:74808050-74808069 None:intergenic 30.0%
!!! ACTGAAGATTTTTTATTCCC+GGG + chr1_2:74808266-74808285 None:intergenic 30.0%
!!! CACTGAAGATTTTTTATTCC+CGG + chr1_2:74808267-74808286 None:intergenic 30.0%
TTTAGCAATAACAAGATACC+AGG + chr1_2:74808397-74808416 None:intergenic 30.0%
ATCATAGACTATACTCACTT+GGG + chr1_2:74808455-74808474 None:intergenic 30.0%
TATCATAGACTATACTCACT+TGG + chr1_2:74808456-74808475 None:intergenic 30.0%
! GTTTTTACAACATGTAATGC+AGG - chr1_2:74808642-74808661 Msa0092390:five_prime_UTR 30.0%
!! GTTTGTTGGTTGGTAATTAC+TGG + chr1_2:74805995-74806014 None:intergenic 35.0%
ATGTTGTGGAAGTTGTTTGT+TGG + chr1_2:74806009-74806028 None:intergenic 35.0%
TCTCTCGAATCAATCTCTAT+TGG - chr1_2:74806076-74806095 Msa0092390:three_prime_UTR 35.0%
ATGATAAAACAGACGAGACT+CGG - chr1_2:74806455-74806474 Msa0092390:CDS 35.0%
!! GAAAGTATCTAGTTTATCGG+CGG - chr1_2:74806624-74806643 Msa0092390:intron 35.0%
TATCAAAATCCGCTTGCAAA+CGG + chr1_2:74806678-74806697 None:intergenic 35.0%
! CTTTAGGAAAAGATGTGAGA+AGG - chr1_2:74806699-74806718 Msa0092390:intron 35.0%
AGCAATTTGTAGAGACTTTG+AGG - chr1_2:74806869-74806888 Msa0092390:intron 35.0%
TTGAGCAATGTTGTCAATCA+CGG - chr1_2:74807016-74807035 Msa0092390:intron 35.0%
ATAAAATTCCGCTGCACAAT+AGG - chr1_2:74807056-74807075 Msa0092390:intron 35.0%
TAAAATTCCGCTGCACAATA+GGG - chr1_2:74807057-74807076 Msa0092390:intron 35.0%
TTGTTAAATAGCAGCTACAG+CGG + chr1_2:74807162-74807181 None:intergenic 35.0%
CAATTTCATCACTCACTATC+AGG + chr1_2:74807186-74807205 None:intergenic 35.0%
GATAGTGAGTGATGAAATTG+TGG - chr1_2:74807186-74807205 Msa0092390:intron 35.0%
AAACCTAGCAAGCTAAACAT+TGG + chr1_2:74807214-74807233 None:intergenic 35.0%
ATAGTATTTGGTCGATGTCA+TGG - chr1_2:74807468-74807487 Msa0092390:intron 35.0%
TAGTATTTGGTCGATGTCAT+GGG - chr1_2:74807469-74807488 Msa0092390:intron 35.0%
! AATGTGAGTGGAGATTTGTT+TGG - chr1_2:74807623-74807642 Msa0092390:intron 35.0%
! ATGTGAGTGGAGATTTGTTT+GGG - chr1_2:74807624-74807643 Msa0092390:intron 35.0%
TCAACTCAAGTACTATCGAA+AGG - chr1_2:74807670-74807689 Msa0092390:intron 35.0%
CAACTCAAGTACTATCGAAA+GGG - chr1_2:74807671-74807690 Msa0092390:intron 35.0%
!! GCTTGTTTTCCAATCATATC+TGG - chr1_2:74807972-74807991 Msa0092390:CDS 35.0%
AAGCATATAATGTGGTTGAG+GGG + chr1_2:74807999-74808018 None:intergenic 35.0%
CAAGCATATAATGTGGTTGA+GGG + chr1_2:74808000-74808019 None:intergenic 35.0%
TCAAGCATATAATGTGGTTG+AGG + chr1_2:74808001-74808020 None:intergenic 35.0%
ACATCATTTCTGCCTATAGA+AGG - chr1_2:74808035-74808054 Msa0092390:CDS 35.0%
AATCCCTTCCTTAAACACTT+CGG + chr1_2:74808165-74808184 None:intergenic 35.0%
ATAATTAAAGAATCCCGTCG+AGG - chr1_2:74808185-74808204 Msa0092390:intron 35.0%
AGGTTTCTTGCTCAAAGATA+AGG - chr1_2:74808205-74808224 Msa0092390:intron 35.0%
TGCTCAAAGATAAGGTTGTA+AGG - chr1_2:74808213-74808232 Msa0092390:intron 35.0%
CGGGAATAAAAAATCTTCAG+TGG - chr1_2:74808265-74808284 Msa0092390:intron 35.0%
GAAATGCTTCTGTTGTTCTA+TGG - chr1_2:74808420-74808439 Msa0092390:CDS 35.0%
TCTGTTGTTCTATGGTATGT+TGG - chr1_2:74808428-74808447 Msa0092390:CDS 35.0%
TCATAGACTATACTCACTTG+GGG + chr1_2:74808454-74808473 None:intergenic 35.0%
AACTCTACGCATCAAAATCA+TGG + chr1_2:74808625-74808644 None:intergenic 35.0%
GGATTTATGCAAGGTGCATA+AGG - chr1_2:74805959-74805978 Msa0092390:three_prime_UTR 40.0%
!! TTGGTTGGTAATTACTGGAG+CGG + chr1_2:74805990-74806009 None:intergenic 40.0%
! TGTGGAAGTTGTTTGTTGGT+TGG + chr1_2:74806005-74806024 None:intergenic 40.0%
TTCTGTATTAACGAACGGGA+CGG + chr1_2:74806037-74806056 None:intergenic 40.0%
GGAAAATGAACGAAATTGGG+CGG + chr1_2:74806152-74806171 None:intergenic 40.0%
! ATAGTGTTGGAGGCGTAAAA+GGG + chr1_2:74806182-74806201 None:intergenic 40.0%
TGCAAAAACAAGACAGAGAG+AGG + chr1_2:74806428-74806447 None:intergenic 40.0%
CTTTCTATCGCCGTTAAGAA+AGG + chr1_2:74806542-74806561 None:intergenic 40.0%
ACAACAGATTGAAGCGGAAA+CGG - chr1_2:74806804-74806823 Msa0092390:intron 40.0%
! TGGCAAGCCTTTTAATCCTT+TGG - chr1_2:74806921-74806940 Msa0092390:intron 40.0%
! ATGTTGTCAATCACGGATTG+CGG - chr1_2:74807023-74807042 Msa0092390:intron 40.0%
!! GAACCAATGTTTAGCTTGCT+AGG - chr1_2:74807208-74807227 Msa0092390:intron 40.0%
!!! TAGCTTGCTAGGTTTGCTTT+TGG - chr1_2:74807219-74807238 Msa0092390:intron 40.0%
AGTATTTGGTCGATGTCATG+GGG - chr1_2:74807470-74807489 Msa0092390:intron 40.0%
! TTTTATACGGGCAATGTGAG+TGG - chr1_2:74807611-74807630 Msa0092390:intron 40.0%
ACAATTTAGCGCAGAGAATG+TGG + chr1_2:74807834-74807853 None:intergenic 40.0%
!! GTCTTTTGATTGCACTGTCA+CGG - chr1_2:74807852-74807871 Msa0092390:CDS 40.0%
!! TCTTTTGATTGCACTGTCAC+GGG - chr1_2:74807853-74807872 Msa0092390:CDS 40.0%
TGATTGGAAAACAAGCAGCA+TGG + chr1_2:74807968-74807987 None:intergenic 40.0%
! AGTCCGAAGTGTTTAAGGAA+GGG - chr1_2:74808159-74808178 Msa0092390:CDS 40.0%
!!! TTTTTTATTCCCGGGACCTA+AGG + chr1_2:74808258-74808277 None:intergenic 40.0%
TCAATTCTAGCAGCTGTTGA+TGG + chr1_2:74808314-74808333 None:intergenic 40.0%
TAACAAGATACCAGGTAAGC+AGG + chr1_2:74808389-74808408 None:intergenic 40.0%
! TGAACGAAATTGGGCGGTTT+TGG + chr1_2:74806146-74806165 None:intergenic 45.0%
! TAGTGTTGGAGGCGTAAAAG+GGG + chr1_2:74806181-74806200 None:intergenic 45.0%
! GATAGTGTTGGAGGCGTAAA+AGG + chr1_2:74806183-74806202 None:intergenic 45.0%
TTACGCCTCCAACACTATCT+TGG - chr1_2:74806184-74806203 Msa0092390:three_prime_UTR 45.0%
TACGCCTCCAACACTATCTT+GGG - chr1_2:74806185-74806204 Msa0092390:three_prime_UTR 45.0%
! AAACCCCAAGATAGTGTTGG+AGG + chr1_2:74806192-74806211 None:intergenic 45.0%
TGGAAACCCCAAGATAGTGT+TGG + chr1_2:74806195-74806214 None:intergenic 45.0%
GAGGAGATTGGATTGAGAGT+TGG + chr1_2:74806215-74806234 None:intergenic 45.0%
! GGAATCTTTGGAAGCGAAGA+GGG + chr1_2:74806237-74806256 None:intergenic 45.0%
! AGGAATCTTTGGAAGCGAAG+AGG + chr1_2:74806238-74806257 None:intergenic 45.0%
! GAGAGAGCGTACACTTGAAA+AGG + chr1_2:74806258-74806277 None:intergenic 45.0%
GCAATATCTCCGTTTGCAAG+CGG - chr1_2:74806666-74806685 Msa0092390:intron 45.0%
! GAGGAGTCATCATGTTTCTG+TGG - chr1_2:74806888-74806907 Msa0092390:intron 45.0%
GTTTCTGTGGTAGCTACAGT+TGG - chr1_2:74806901-74806920 Msa0092390:intron 45.0%
! ATGTTATGTCTAAGGCCTCG+TGG - chr1_2:74807705-74807724 Msa0092390:intron 45.0%
! TGTTATGTCTAAGGCCTCGT+GGG - chr1_2:74807706-74807725 Msa0092390:intron 45.0%
! GAGAATGTGGCAGGAGTATA+GGG + chr1_2:74807821-74807840 None:intergenic 45.0%
! AGAGAATGTGGCAGGAGTAT+AGG + chr1_2:74807822-74807841 None:intergenic 45.0%
TTGCAGATACATGAAGCCGT+TGG - chr1_2:74808128-74808147 Msa0092390:CDS 45.0%
! TGAGGAGTCCGAAGTGTTTA+AGG - chr1_2:74808154-74808173 Msa0092390:CDS 45.0%
! GAGTCCGAAGTGTTTAAGGA+AGG - chr1_2:74808158-74808177 Msa0092390:CDS 45.0%
TTTGAGCAAGAAACCTCGAC+GGG + chr1_2:74808201-74808220 None:intergenic 45.0%
CTTTGAGCAAGAAACCTCGA+CGG + chr1_2:74808202-74808221 None:intergenic 45.0%
AAGGAAACCTTCACAAGTGC+TGG + chr1_2:74808239-74808258 None:intergenic 45.0%
GCACTTGTGAAGGTTTCCTT+AGG - chr1_2:74808239-74808258 Msa0092390:intron 45.0%
GTATTAACGAACGGGACGGA+GGG + chr1_2:74806033-74806052 None:intergenic 50.0%
TGTATTAACGAACGGGACGG+AGG + chr1_2:74806034-74806053 None:intergenic 50.0%
ACGCCTCCAACACTATCTTG+GGG - chr1_2:74806186-74806205 Msa0092390:three_prime_UTR 50.0%
! ATCTTTGGAAGCGAAGAGGG+AGG + chr1_2:74806234-74806253 None:intergenic 50.0%
GCTATAGCCCTATTGTGCAG+CGG + chr1_2:74807067-74807086 None:intergenic 50.0%
TTTAGCGCAGAGAATGTGGC+AGG + chr1_2:74807830-74807849 None:intergenic 50.0%
TTGAGGGGCCCAGATATGAT+TGG + chr1_2:74807984-74808003 None:intergenic 50.0%
TGTAAGGCCAGCACTTGTGA+AGG - chr1_2:74808229-74808248 Msa0092390:intron 50.0%
GTGAAGGTTTCCTTAGGTCC+CGG - chr1_2:74808245-74808264 Msa0092390:intron 50.0%
TGAAGGTTTCCTTAGGTCCC+GGG - chr1_2:74808246-74808265 Msa0092390:intron 50.0%
CAAGATACCAGGTAAGCAGG+TGG + chr1_2:74808386-74808405 None:intergenic 50.0%
GAAGCGAAGAGGGAGGAGAT+TGG + chr1_2:74806227-74806246 None:intergenic 55.0%
ACATGAAGCCGTTGGACGTG+AGG - chr1_2:74808136-74808155 Msa0092390:CDS 55.0%
TTCGGACTCCTCACGTCCAA+CGG + chr1_2:74808147-74808166 None:intergenic 55.0%
AGTGGCATCTACCCAGTCCT+TGG - chr1_2:74808283-74808302 Msa0092390:intron 55.0%
TGATGGCTGCTCCAAGGACT+GGG + chr1_2:74808297-74808316 None:intergenic 55.0%
! TTGATGGCTGCTCCAAGGAC+TGG + chr1_2:74808298-74808317 None:intergenic 55.0%
!! AGCTGTTGATGGCTGCTCCA+AGG + chr1_2:74808303-74808322 None:intergenic 55.0%
CCAGGTAAGCAGGTGGAACT+AGG + chr1_2:74808379-74808398 None:intergenic 55.0%
CCTAGTTCCACCTGCTTACC+TGG - chr1_2:74808376-74808395 Msa0092390:intron 55.0%
! ACGGGACGGAGGGTATGTTG+TGG + chr1_2:74806023-74806042 None:intergenic 60.0%
GAGGCGTAAAAGGGGCGAGA+TGG + chr1_2:74806173-74806192 None:intergenic 60.0%
! GTCTAAGGCCTCGTGGGACT+TGG - chr1_2:74807712-74807731 Msa0092390:CDS 60.0%
GTTTGCAGCCAAGTCCCACG+AGG + chr1_2:74807723-74807742 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 74805946 74808704 74805946 ID=Msa0092390;Name=Msa0092390
chr1_2 mRNA 74805946 74808704 74805946 ID=Msa0092390-mRNA-1;Parent=Msa0092390;Name=Msa0092390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|1|1|1|1|3|361|300
chr1_2 exon 74805946 74806516 74805946 ID=Msa0092390-mRNA-1:exon:26367;Parent=Msa0092390-mRNA-1
chr1_2 exon 74807708 74808199 74807708 ID=Msa0092390-mRNA-1:exon:26366;Parent=Msa0092390-mRNA-1
chr1_2 exon 74808385 74808704 74808385 ID=Msa0092390-mRNA-1:exon:26365;Parent=Msa0092390-mRNA-1
chr1_2 five_prime_UTR 74808586 74808704 74808586 ID=Msa0092390-mRNA-1:five_prime_utr;Parent=Msa0092390-mRNA-1
chr1_2 CDS 74808385 74808585 74808385 ID=Msa0092390-mRNA-1:cds;Parent=Msa0092390-mRNA-1
chr1_2 CDS 74807708 74808199 74807708 ID=Msa0092390-mRNA-1:cds;Parent=Msa0092390-mRNA-1
chr1_2 CDS 74806307 74806516 74806307 ID=Msa0092390-mRNA-1:cds;Parent=Msa0092390-mRNA-1
chr1_2 three_prime_UTR 74805946 74806306 74805946 ID=Msa0092390-mRNA-1:three_prime_utr;Parent=Msa0092390-mRNA-1
Gene Sequence

>Msa0092390

ATGGCTACTTCTCTCTCGAATCAATCTCTATTGGCTTGTTCTTTTTCATCATCTTCTTCTTCATTCTCTTCAAAATCTCCAAAACCGCCCAATTTCGTTCATTTTCCATCTCGCCCCTTTTACGCCTCCAACACTATCTTGGGGTTTCCAACTCTCAATCCAATCTCCTCCCTCTTCGCTTCCAAAGATTCCTTTTCAAGTACAAATGATAAAACAGACGAGACTCGGAATGATGAAGATAAACAAGATTTACCAAGCTTATTGGTCCTTATTAAAGCATACAAGAAAGCCTTTCTTAACGGCGATAGAAAGACCGCATTGTTGATTGAAGAAATAATACAATCAAAAGCAATTGAAAGGAATAAATTGATTCAGAAAGTATCTAGTTTATCGGCGGATAAAGTTTCTTGTAAAGAGCAATATCTCCGTTTGCAAGCGGATTTTGATAACTTTAGGAAAAGATGTGAGAAGGAAAGAATTAGCATTCAATCGGATGCTCAGCAAGAATTCATTAAAAAACTTCTGTTGATGGTGGACAGTTTTGAGAGAGTTAAACAACAGATTGAAGCGGAAACGGAGAAAGAGAAGAAGATTGATGCGAGCTATCAAAGTCTTTACAAGCAATTTGTAGAGACTTTGAGGAGTCATCATGTTTCTGTGGTAGCTACAGTTGGCAAGCCTTTTAATCCTTTGATACATGAAGCCGTTGGACGTGAGGAGTCCGAAGTGTTTAAGGAAGGGATTATAATTAAAGAATCCCGTCGAGGTTTCTTGCTCAAAGATAAGGTTGTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCCGGGAATAAAAAATCTTCAGTGGCATCTACCCAGTCCTTGGAGCAGCCATCAACAGCTGCTAGAATTGATGAAAGATAA

Protein sequence

>Msa0092390

MATSLSNQSLLACSFSSSSSSFSSKSPKPPNFVHFPSRPFYASNTILGFPTLNPISSLFASKDSFSSTNDKTDETRNDEDKQDLPSLLVLIKAYKKAFLNGDRKTALLIEEIIQSKAIERNKLIQKVSSLSADKVSCKEQYLRLQADFDNFRKRCEKERISIQSDAQQEFIKKLLLMVDSFERVKQQIEAETEKEKKIDASYQSLYKQFVETLRSHHVSVVATVGKPFNPLIHEAVGREESEVFKEGIIIKESRRGFLLKDKVVRPALVKVSLGPGNKKSSVASTQSLEQPSTAARIDER*