AlfalfaGEDB | Msa0075730

M. sativa cultivar zhongmu-4 / Msa0075730

KEGG: K02958
GO: GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904
PFAM: PF00203.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075730	GAU44818.1	100.000	152	0	0	1	152	1	152	1.05e-105	308

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075730	sp\|P31674\|RS15_ORYSJ	88.961	154	15	1	1	152	1	154	2.22e-96	277

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075730	A0A2Z6NJY7	100.000	152	0	0	1	152	1	152	4.99e-106	308

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028150	Msa0075730	0.998958	1.522245e-283	-8.615850e-47
Msa0075730	Msa0086160	0.807023	6.187333e-50	-8.615850e-47
Msa0075730	Msa0123790	0.989597	8.266102e-179	-8.615850e-47
Msa0075730	Msa0433060	0.819539	1.101565e-52	-8.615850e-47
Msa0075730	Msa0524680	0.816277	6.009083e-52	-8.615850e-47
Msa0075730	Msa0585570	0.820398	7.006747e-53	-8.615850e-47
Msa0075730	Msa0663400	0.817616	3.007418e-52	-8.615850e-47
Msa0075730	Msa0930100	0.804376	2.225279e-49	-8.615850e-47
Msa0075730	Msa1085850	0.820866	5.468836e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075730	MtrunA17_Chr1g0184681	99.342	152	1	0	1	152	1	152	2.95e-109	307
Msa0075730	MtrunA17_Chr4g0038481	96.711	152	5	0	1	152	1	152	8.07e-105	296
Msa0075730	MtrunA17_Chr8g0391601	96.104	154	4	1	1	152	1	154	1.61e-104	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0075730	AT5G09510.1	94.079	152	9	0	1	152	1	152	6.82e-96	273
Msa0075730	AT1G04270.1	94.079	152	9	0	1	152	1	152	1.06e-95	273
Msa0075730	AT5G09500.1	88.816	152	15	1	1	152	1	150	9.89e-95	270
Msa0075730	AT1G04270.2	93.421	152	9	1	1	152	1	151	3.95e-93	266
Msa0075730	AT5G09490.1	82.237	152	27	0	1	152	1	152	1.17e-90	260
Msa0075730	AT5G43640.1	87.919	149	18	0	4	152	1	149	4.43e-85	246
Msa0075730	AT5G09510.2	94.915	118	6	0	35	152	1	118	4.22e-71	209
Msa0075730	AT5G63070.1	62.500	160	52	3	1	152	1	160	3.97e-63	191
Msa0075730	AT1G33850.1	80.597	67	13	0	4	70	1	67	2.53e-22	84.7

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Find 71 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCACGGTAGGCCCGGTAT+TGG	0.508994	1_2:+51275936	Msa0075730:CDS
AAGCTTGACAAGTTCATCAG+TGG	0.629931	1_2:-51274485	None:intergenic
AATGACAATCTTCACTTCAA+AGG	0.512033	1_2:-51275984	None:intergenic
ACAAGCCTGTTAAGCACGGT+AGG	0.632440	1_2:+51275925	Msa0075730:CDS
ACAGAAAAGGGAAGCACCTC+CGG	0.413302	1_2:+51275743	Msa0075730:intron
ACAGATAACTCACCGCCTTG+CGG	0.662337	1_2:-51275031	None:intergenic
ACAGGTTCTGGCTTCTCACC+CGG	0.516641	1_2:-51275762	None:intergenic
ACCCTAGCACAATCCCTGAG+AGG	0.707194	1_2:+51274212	Msa0075730:five_prime_UTR
ACCTCTCAGGGATTGTGCTA+GGG	0.474600	1_2:-51274213	None:intergenic
ACTCATCAAGAAGCTCCGCA+AGG	0.648877	1_2:+51275016	Msa0075730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGAAAGAGATAGAGTTA+GGG	-	chr1_2:51274298-51274317	None:intergenic	30.0%
GAAATTGTTTATTTAGCGGT+TGG	+	chr1_2:51275172-51275191	Msa0075730:intron	30.0%
TATACTGTCTTAAATTTGGG+GGG	+	chr1_2:51275395-51275414	Msa0075730:intron	30.0%
GCATTTGAACTTAACAGATA+TGG	+	chr1_2:51275421-51275440	Msa0075730:intron	30.0%
ATCTCCTTTACAGATACATT+CGG	+	chr1_2:51275452-51275471	Msa0075730:intron	30.0%
CTTAATTTCAACTTGGTTGA+AGG	-	chr1_2:51275862-51275881	None:intergenic	30.0%
TTTCAGGCTTAATTTCAACT+TGG	-	chr1_2:51275869-51275888	None:intergenic	30.0%
GAAATTAAGCCTGAAATGAT+TGG	+	chr1_2:51275873-51275892	Msa0075730:CDS	30.0%
AATGACAATCTTCACTTCAA+AGG	-	chr1_2:51275987-51276006	None:intergenic	30.0%
TTGCATTGAAAGATAATGTG+GGG	-	chr1_2:51276014-51276033	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	51274197	51276385	51274197	ID=Msa0075730;Name=Msa0075730
chr1_2	mRNA	51274197	51276385	51274197	ID=Msa0075730-mRNA-1;Parent=Msa0075730;Name=Msa0075730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=88\|1\|1\|1\|1\|1\|4\|390\|152
chr1_2	exon	51274197	51274287	51274197	ID=Msa0075730-mRNA-1:exon:15752;Parent=Msa0075730-mRNA-1
chr1_2	exon	51274382	51274530	51274382	ID=Msa0075730-mRNA-1:exon:15753;Parent=Msa0075730-mRNA-1
chr1_2	exon	51274983	51275040	51274983	ID=Msa0075730-mRNA-1:exon:15754;Parent=Msa0075730-mRNA-1
chr1_2	exon	51275747	51276385	51275747	ID=Msa0075730-mRNA-1:exon:15755;Parent=Msa0075730-mRNA-1
chr1_2	five_prime_UTR	51274197	51274284	51274197	ID=Msa0075730-mRNA-1:five_prime_utr;Parent=Msa0075730-mRNA-1
chr1_2	CDS	51274285	51274287	51274285	ID=Msa0075730-mRNA-1:cds;Parent=Msa0075730-mRNA-1
chr1_2	CDS	51274382	51274530	51274382	ID=Msa0075730-mRNA-1:cds;Parent=Msa0075730-mRNA-1
chr1_2	CDS	51274983	51275040	51274983	ID=Msa0075730-mRNA-1:cds;Parent=Msa0075730-mRNA-1
chr1_2	CDS	51275747	51275995	51275747	ID=Msa0075730-mRNA-1:cds;Parent=Msa0075730-mRNA-1
chr1_2	three_prime_UTR	51275996	51276385	51275996	ID=Msa0075730-mRNA-1:three_prime_utr;Parent=Msa0075730-mRNA-1

Gene Sequence

>Msa0075730

ATGGCGGATGTTGAACCAGAGGTAGCTGCACAAGGAGTGCCAAAGAAGAGAACATTTAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTTTTGGATATGTCCACTGATGAACTTGTCAAGCTTTTCTCTGCTCGTGCACGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCGAAAAGGGAAGCACCTCCGGGTGAGAAGCCAGAACCTGTGAGGACTCACCTCCGTAACATGATCATTGTGCCTGAGATGATCGGTAGCATTATTGGTGTCTACAATGGAAAGACCTTCAACCAAGTTGAAATTAAGCCTGAAATGATTGGCCACTATCTGGCTGAATTTTCAATCTCTTACAAGCCTGTTAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCCTCCAGGTTTATTCCTTTGAAGTGA

Protein sequence

>Msa0075730

MADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*