AlfalfaGEDB | Msa0930100

M. sativa cultivar zhongmu-4 / Msa0930100

KEGG: K14753
GO: GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003735 GO:0005078 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006417 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010608 GO:0010646 GO:0010647 GO:0016020 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0022613 GO:0022622 GO:0022626 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0032947 GO:0032991 GO:0033993 GO:0034248 GO:0035591 GO:0042221 GO:0042254 GO:0042325 GO:0042327 GO:0042788 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043408 GO:0043410 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045937 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060255 GO:0060263 GO:0060267 GO:0065007 GO:0070013 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1990904 GO:2000112
PFAM: PF20426.1

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930100	XP_003631071.1	100.000	325	0	0	1	325	1	325	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930100	sp\|O24076\|GBLP_MEDSA	99.692	325	1	0	1	325	1	325	0.0	655

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0930100	0.855539	5.895112e-62	-8.615850e-47
Msa0016350	Msa0930100	0.806524	7.890334e-50	-8.615850e-47
Msa0021290	Msa0930100	0.806127	9.566527e-50	-8.615850e-47
Msa0021320	Msa0930100	0.811556	6.598698e-51	-8.615850e-47
Msa0028150	Msa0930100	0.809306	2.020037e-50	-8.615850e-47
Msa0040220	Msa0930100	0.849074	4.082629e-60	-8.615850e-47
Msa0042510	Msa0930100	0.800938	1.139640e-48	-8.615850e-47
Msa0075730	Msa0930100	0.804376	2.225279e-49	-8.615850e-47
Msa0079560	Msa0930100	0.813647	2.302527e-51	-8.615850e-47
Msa0086160	Msa0930100	0.852214	5.346213e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930100	MtrunA17_Chr8g0392701	100.000	325	0	0	1	325	1	325	0.0	659
Msa0930100	MtrunA17_Chr4g0067151	28.571	280	177	10	7	272	19	289	1.50e-26	107
Msa0930100	MtrunA17_Chr4g0067151	23.929	280	142	10	96	322	18	279	7.69e-15	74.3
Msa0930100	MtrunA17_Chr1g0185501	32.857	210	132	5	56	261	20	224	5.80e-25	102
Msa0930100	MtrunA17_Chr1g0185501	28.413	271	174	8	10	272	22	280	6.82e-25	102
Msa0930100	MtrunA17_Chr1g0185501	31.977	172	105	6	11	178	149	312	8.93e-12	65.1
Msa0930100	MtrunA17_Chr2g0281451	28.063	253	170	5	13	263	13	255	1.31e-23	101
Msa0930100	MtrunA17_Chr2g0281451	28.750	240	147	6	79	316	32	249	1.37e-22	98.6
Msa0930100	MtrunA17_Chr6g0448921	28.740	254	167	7	13	263	14	256	3.57e-22	97.4
Msa0930100	MtrunA17_Chr6g0448921	27.083	240	151	7	79	316	33	250	2.43e-18	85.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930100	AT3G18130.1	86.503	326	43	1	1	325	1	326	0.0	583
Msa0930100	AT1G18080.1	86.239	327	43	2	1	325	1	327	0.0	580
Msa0930100	AT1G48630.1	85.583	326	46	1	1	325	1	326	0.0	576
Msa0930100	AT3G49660.1	30.466	279	165	7	54	323	15	273	6.01e-32	121
Msa0930100	AT3G49660.1	27.273	319	199	9	10	320	19	312	4.34e-28	111
Msa0930100	AT4G02730.1	29.151	271	167	7	57	322	37	287	4.71e-24	100
Msa0930100	AT4G02730.1	29.044	272	172	9	10	272	38	297	8.73e-23	97.4
Msa0930100	AT4G02730.1	30.698	215	135	8	11	220	124	329	4.28e-14	72.4
Msa0930100	AT1G11160.1	29.218	243	148	6	76	316	29	249	3.61e-22	97.8
Msa0930100	AT1G11160.1	26.908	249	172	4	13	260	13	252	8.07e-21	94.0

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Find 121 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACCAATCATGGCTGA+GGG	0.652791	6_2:-78918749	Msa0930100:exon
AAAGATTATACTTGTTTACT+TGG	0.377119	6_2:+78916568	None:intergenic
AAATACCTTCTTCTTGGTGG+TGG	0.495380	6_2:+78917878	None:intergenic
AACAAGTATAATCTTTATTT+TGG	0.111148	6_2:-78916561	Msa0930100:three_prime_UTR
AACAATTGTCTCGGCGTCAT+GGG	0.536604	6_2:-78918246	Msa0930100:CDS
AACACACTTGCTGGACATTC+TGG	0.280035	6_2:-78918179	Msa0930100:CDS
AACATCAGTGTGAGCACGCA+TGG	0.552670	6_2:+78918709	None:intergenic
AACGCCCGATTCCCCACACT+CGG	0.606339	6_2:+78916761	None:intergenic
AAGCTGAGGAACACACTTGC+TGG	0.393429	6_2:-78918188	Msa0930100:CDS
AATAAATATGTAATGCTTCA+TGG	0.351006	6_2:+78916495	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAATGAATGAATTTGAG+AGG	+	chr6_2:78916346-78916365	None:intergenic	30.0%
GAAACACAAAGCATGAATAA+TGG	+	chr6_2:78917121-78917140	None:intergenic	30.0%
AAAAAATACCTTCTTCTTGG+TGG	+	chr6_2:78917280-78917299	None:intergenic	30.0%
CAACAATATATCAACAGCAT+CGG	+	chr6_2:78917325-78917344	None:intergenic	30.0%
CATAGCACATATTAATGTCA+GGG	+	chr6_2:78917439-78917458	None:intergenic	30.0%
TCATAGCACATATTAATGTC+AGG	+	chr6_2:78917440-78917459	None:intergenic	30.0%
AATGAACAATTGCTGTGTAA+TGG	-	chr6_2:78917600-78917619	Msa0930100:intron	30.0%
AGAGACTGTGTTTAACTAAT+TGG	-	chr6_2:78917692-78917711	Msa0930100:intron	30.0%
TCAAAGTTCAGTATTAACTG+AGG	+	chr6_2:78917851-78917870	None:intergenic	30.0%
TTGCAACTCAACCATTAATT+CGG	-	chr6_2:78918270-78918289	Msa0930100:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	78916340	78918834	78916340	ID=Msa0930100;Name=Msa0930100
chr6_2	mRNA	78916340	78918834	78916340	ID=Msa0930100-mRNA-1;Parent=Msa0930100;Name=Msa0930100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=75\|1\|1\|1\|1\|1\|2\|416\|325
chr6_2	exon	78916340	78916857	78916340	ID=Msa0930100-mRNA-1:exon:13457;Parent=Msa0930100-mRNA-1
chr6_2	exon	78917884	78918834	78917884	ID=Msa0930100-mRNA-1:exon:13456;Parent=Msa0930100-mRNA-1
chr6_2	five_prime_UTR	78918760	78918834	78918760	ID=Msa0930100-mRNA-1:five_prime_utr;Parent=Msa0930100-mRNA-1
chr6_2	CDS	78917884	78918759	78917884	ID=Msa0930100-mRNA-1:cds;Parent=Msa0930100-mRNA-1
chr6_2	CDS	78916756	78916857	78916756	ID=Msa0930100-mRNA-1:cds;Parent=Msa0930100-mRNA-1
chr6_2	three_prime_UTR	78916340	78916755	78916340	ID=Msa0930100-mRNA-1:three_prime_utr;Parent=Msa0930100-mRNA-1

Gene Sequence

>Msa0930100

ATGGCTGAGGGTCTTGTTCTTCGCGGCACCATGCGTGCTCACACTGATGTTGTTACAGCAATTGCAACCCCAATCGACAATTCCGACATGATCGTCACTGCCTCCCGTGACAAATCCATCATCCTGTGGCATCTTACCAAGGAGGACAAGACCTACGGTGTCCCCCGCCGCCGTCTCACCGGTCACTCTCATTTCGTTCAGGATGTTGTTCTATCATCCGACGGGCAGTTTGCTCTGTCTGGTTCATGGGACGGTGAACTTCGTCTCTGGGATCTCAACGCTGGAACCTCCGCTCGCCGATTCGTTGGTCACACCAAAGATGTTCTCTCCGTCGCTTTCTCCATCGATAACCGTCAGATCGTGTCTGCTTCTCGTGACCGCACGATTAAGCTCTGGAACACTCTTGGTGAGTGCAAGTACACTATCCAAGATGGTGATGCTCATTCTGATTGGGTTAGCTGTGTCAGATTCAGCCCCAGCACTCTTCAGCCAACAATTGTCTCGGCGTCATGGGACAGGACCGTTAAGGTTTGGAATCTGACCAACTGTAAGCTGAGGAACACACTTGCTGGACATTCTGGATATGTCAACACTGTTGCTGTTTCACCTGATGGTTCTCTCTGTGCTTCTGGTGGGAAAGATGGAGTGATTTTGCTGTGGGATTTGGCTGAGGGAAAGAGACTTTACTCTCTTGATGCTGGTTCCATTATTCATGCTTTGTGTTTCAGTCCTAACAGGTACTGGCTCTGTGCTGCTACTGAGTCTAGCATTAAGATCTGGGATTTGGAGAGCAAGAGCATTGTTGAGGATTTGAAGGTTGATCTCAAGACTGAAGCTGATGCTGCTATTGGTGGTGATACCACCACCAAGAAGAAGGTTATCTACTGTACTAGTTTGAACTGGAGTGCAGACGGAAGCACCTTGTTTAGTGGATATACCGATGGTGTTGTCCGAGTGTGGGGAATCGGGCGTTACTAA

Protein sequence

>Msa0930100

MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY*