Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663400 | XP_003604229.1 | 95.745 | 141 | 2 | 1 | 19 | 155 | 4 | 144 | 2.45e-90 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663400 | sp|Q9XHS0|RS12_HORVU | 72.593 | 135 | 32 | 2 | 25 | 155 | 10 | 143 | 2.78e-64 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663400 | G7JDB2 | 95.745 | 141 | 2 | 1 | 19 | 155 | 4 | 144 | 1.17e-90 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028150 | Msa0663400 | 0.818903 | 1.537572e-52 | -8.615850e-47 |
| Msa0075730 | Msa0663400 | 0.817616 | 3.007418e-52 | -8.615850e-47 |
| Msa0086160 | Msa0663400 | 0.883170 | 5.626129e-71 | -8.615850e-47 |
| Msa0087910 | Msa0663400 | 0.821087 | 4.865839e-53 | -8.615850e-47 |
| Msa0114600 | Msa0663400 | 0.894502 | 2.322821e-75 | -8.615850e-47 |
| Msa0602900 | Msa0663400 | 0.850501 | 1.630052e-60 | -8.615850e-47 |
| Msa0605890 | Msa0663400 | 0.833823 | 4.272704e-56 | -8.615850e-47 |
| Msa0609120 | Msa0663400 | 0.802408 | 5.691646e-49 | -8.615850e-47 |
| Msa0609350 | Msa0663400 | 0.802496 | 5.458464e-49 | -8.615850e-47 |
| Msa0643960 | Msa0663400 | 0.850350 | 1.797338e-60 | -8.615850e-47 |
| Msa0663400 | Msa0694400 | 0.834456 | 2.966673e-56 | -8.615850e-47 |
| Msa0663400 | Msa0704860 | 0.822103 | 2.833222e-53 | -8.615850e-47 |
| Msa0663400 | Msa0708630 | 0.844273 | 8.371766e-59 | -8.615850e-47 |
| Msa0663400 | Msa0715970 | 0.867210 | 1.618190e-65 | -8.615850e-47 |
| Msa0663400 | Msa0718560 | 0.820357 | 7.157470e-53 | -8.615850e-47 |
| Msa0663400 | Msa0749000 | 0.855875 | 4.702338e-62 | -8.615850e-47 |
| Msa0663400 | Msa0790450 | 0.817749 | 2.805962e-52 | -8.615850e-47 |
| Msa0663400 | Msa0796490 | 0.873187 | 1.786243e-67 | -8.615850e-47 |
| Msa0663400 | Msa0798590 | 0.818418 | 1.980911e-52 | -8.615850e-47 |
| Msa0663400 | Msa0902730 | 0.852364 | 4.846090e-61 | -8.615850e-47 |
| Msa0663400 | Msa0929700 | 0.851529 | 8.364500e-61 | -8.615850e-47 |
| Msa0663400 | Msa0930100 | 0.822930 | 1.819501e-53 | -8.615850e-47 |
| Msa0663400 | Msa0930890 | 0.865168 | 7.183038e-65 | -8.615850e-47 |
| Msa0663400 | Msa1004780 | 0.817250 | 3.634543e-52 | -8.615850e-47 |
| Msa0663400 | Msa1013430 | 0.853219 | 2.761220e-61 | -8.615850e-47 |
| Msa0663400 | Msa1031740 | 0.825907 | 3.629455e-54 | -8.615850e-47 |
| Msa0663400 | Msa1066350 | 0.807434 | 5.064312e-50 | -8.615850e-47 |
| Msa0663400 | Msa1068660 | 0.804035 | 2.620789e-49 | -8.615850e-47 |
| Msa0663400 | Msa1070810 | 0.823432 | 1.389808e-53 | -8.615850e-47 |
| Msa0663400 | Msa1079910 | 0.801910 | 7.204137e-49 | -8.615850e-47 |
| Msa0663400 | Msa1085850 | 0.871504 | 6.499320e-67 | -8.615850e-47 |
| Msa0663400 | Msa1093500 | 0.838655 | 2.528074e-57 | -8.615850e-47 |
| Msa0663400 | Msa1118790 | 0.843055 | 1.772381e-58 | -8.615850e-47 |
| Msa0663400 | Msa1126690 | 0.826454 | 2.688486e-54 | -8.615850e-47 |
| Msa0663400 | Msa1130680 | 0.839675 | 1.375056e-57 | -8.615850e-47 |
| Msa0663400 | Msa1144610 | 0.832291 | 1.028113e-55 | -8.615850e-47 |
| Msa0663400 | Msa1158630 | 0.822021 | 2.959744e-53 | -8.615850e-47 |
| Msa0663400 | Msa1165210 | 0.823613 | 1.260471e-53 | -8.615850e-47 |
| Msa0663400 | Msa1219760 | 0.805074 | 1.591132e-49 | -8.615850e-47 |
| Msa0663400 | Msa1235950 | 0.806432 | 8.251661e-50 | -8.615850e-47 |
| Msa0663400 | Msa1235980 | 0.806716 | 7.185728e-50 | -8.615850e-47 |
| Msa0663400 | Msa1255830 | 0.813852 | 2.075204e-51 | -8.615850e-47 |
| Msa0663400 | Msa1255850 | 0.807855 | 4.123181e-50 | -8.615850e-47 |
| Msa0663400 | Msa1296090 | 0.814373 | 1.592483e-51 | -8.615850e-47 |
| Msa0663400 | Msa1330730 | 0.834199 | 3.441386e-56 | -8.615850e-47 |
| Msa0663400 | Msa1341780 | 0.858327 | 8.887130e-63 | -8.615850e-47 |
| Msa0663400 | Msa1351020 | 0.868529 | 6.102005e-66 | -8.615850e-47 |
| Msa0663400 | Msa1351910 | 0.824971 | 6.045128e-54 | -8.615850e-47 |
| Msa0663400 | Msa1353300 | 0.829619 | 4.650556e-55 | -8.615850e-47 |
| Msa0663400 | Msa1367540 | 0.849946 | 2.332898e-60 | -8.615850e-47 |
| Msa0663400 | Msa1371410 | 0.800921 | 1.148451e-48 | -8.615850e-47 |
| Msa0663400 | Msa1385480 | 0.857033 | 2.150173e-62 | -8.615850e-47 |
| Msa0663400 | Msa1403520 | 0.800579 | 1.349033e-48 | -8.615850e-47 |
| Msa0663400 | Msa1407550 | 0.812537 | 4.032677e-51 | -8.615850e-47 |
| Msa0663400 | Msa1413570 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0663400 | Msa1424570 | 0.826697 | 2.352529e-54 | -8.615850e-47 |
| Msa0663400 | Msa1432310 | 0.834366 | 3.124051e-56 | -8.615850e-47 |
| Msa0663400 | Msa1444680 | 0.817175 | 3.779595e-52 | -8.615850e-47 |
| Msa0663400 | Msa1446410 | 0.811848 | 5.700287e-51 | -8.615850e-47 |
| Msa0663400 | Msa1450560 | 0.815774 | 7.780573e-52 | -8.615850e-47 |
| Msa0663400 | Msa1462580 | 0.847911 | 8.570586e-60 | -8.615850e-47 |
| Msa0663400 | Msa1463570 | 0.831505 | 1.607213e-55 | -8.615850e-47 |
| Msa0123290 | Msa0663400 | 0.848740 | 5.053671e-60 | -8.615850e-47 |
| Msa0123790 | Msa0663400 | 0.814448 | 1.532805e-51 | -8.615850e-47 |
| Msa0128330 | Msa0663400 | 0.843497 | 1.350960e-58 | -8.615850e-47 |
| Msa0132460 | Msa0663400 | 0.843191 | 1.630476e-58 | -8.615850e-47 |
| Msa0134580 | Msa0663400 | 0.830953 | 2.196198e-55 | -8.615850e-47 |
| Msa0167860 | Msa0663400 | 0.837803 | 4.188905e-57 | -8.615850e-47 |
| Msa0174580 | Msa0663400 | 0.853654 | 2.071961e-61 | -8.615850e-47 |
| Msa0182050 | Msa0663400 | 0.841910 | 3.566458e-58 | -8.615850e-47 |
| Msa0182100 | Msa0663400 | 0.851839 | 6.833694e-61 | -8.615850e-47 |
| Msa0192300 | Msa0663400 | 0.823043 | 1.713254e-53 | -8.615850e-47 |
| Msa0192490 | Msa0663400 | 0.813090 | 3.051521e-51 | -8.615850e-47 |
| Msa0223240 | Msa0663400 | 0.814954 | 1.183983e-51 | -8.615850e-47 |
| Msa0225350 | Msa0663400 | 0.809782 | 1.596313e-50 | -8.615850e-47 |
| Msa0377370 | Msa0663400 | 0.832490 | 9.178067e-56 | -8.615850e-47 |
| Msa0419710 | Msa0663400 | 0.859074 | 5.317171e-63 | -8.615850e-47 |
| Msa0426250 | Msa0663400 | 0.814590 | 1.425605e-51 | -8.615850e-47 |
| Msa0426940 | Msa0663400 | 0.810234 | 1.275701e-50 | -8.615850e-47 |
| Msa0433060 | Msa0663400 | 0.876612 | 1.215566e-68 | -8.615850e-47 |
| Msa0450150 | Msa0663400 | 0.898494 | 5.022049e-77 | -8.615850e-47 |
| Msa0468440 | Msa0663400 | 0.822157 | 2.752475e-53 | -8.615850e-47 |
| Msa0270160 | Msa0663400 | 0.843743 | 1.161385e-58 | -8.615850e-47 |
| Msa0277600 | Msa0663400 | 0.895164 | 1.242764e-75 | -8.615850e-47 |
| Msa0301250 | Msa0663400 | 0.821376 | 4.172231e-53 | -8.615850e-47 |
| Msa0313060 | Msa0663400 | 0.855055 | 8.151862e-62 | -8.615850e-47 |
| Msa0315430 | Msa0663400 | 0.834308 | 3.230390e-56 | -8.615850e-47 |
| Msa0521730 | Msa0663400 | 0.810706 | 1.008697e-50 | -8.615850e-47 |
| Msa0524680 | Msa0663400 | 0.875801 | 2.313340e-68 | -8.615850e-47 |
| Msa0529900 | Msa0663400 | 0.852623 | 4.087336e-61 | -8.615850e-47 |
| Msa0547920 | Msa0663400 | 0.847921 | 8.517391e-60 | -8.615850e-47 |
| Msa0568380 | Msa0663400 | 0.857824 | 1.254634e-62 | -8.615850e-47 |
| Msa0573550 | Msa0663400 | 0.861894 | 7.441571e-64 | -8.615850e-47 |
| Msa0574780 | Msa0663400 | 0.812163 | 4.867201e-51 | -8.615850e-47 |
| Msa0585570 | Msa0663400 | 0.997733 | 4.174295e-248 | -8.615850e-47 |
| Msa0601130 | Msa0663400 | 0.802915 | 4.472184e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663400 | MtrunA17_Chr4g0001281 | 95.745 | 141 | 2 | 1 | 19 | 155 | 4 | 144 | 2.26e-94 | 269 |
| Msa0663400 | MtrunA17_Chr5g0399411 | 92.000 | 125 | 6 | 1 | 35 | 155 | 18 | 142 | 1.01e-79 | 232 |
| Msa0663400 | MtrunA17_Chr8g0384331 | 88.095 | 126 | 11 | 1 | 34 | 155 | 18 | 143 | 1.91e-77 | 226 |
| Msa0663400 | MtrunA17_Chr4g0037191 | 66.265 | 83 | 13 | 1 | 1 | 68 | 21 | 103 | 8.18e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663400 | AT2G32060.3 | 69.600 | 125 | 33 | 2 | 35 | 155 | 21 | 144 | 5.51e-59 | 180 |
| Msa0663400 | AT2G32060.1 | 69.600 | 125 | 33 | 2 | 35 | 155 | 21 | 144 | 5.51e-59 | 180 |
| Msa0663400 | AT2G32060.2 | 69.600 | 125 | 33 | 2 | 35 | 155 | 21 | 144 | 5.51e-59 | 180 |
| Msa0663400 | AT1G15930.1 | 71.200 | 125 | 31 | 2 | 35 | 155 | 21 | 144 | 3.66e-58 | 178 |
| Msa0663400 | AT1G15930.2 | 71.200 | 125 | 31 | 2 | 35 | 155 | 21 | 144 | 3.66e-58 | 178 |
Find 49 sgRNAs with CRISPR-Local
Find 490 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCGTGGTCAGGATTT+TGG | 0.169284 | 4_4:+2204433 | Msa0663400:intron |
| CTTCTAGTTGGTGTTATCTA+AGG | 0.245010 | 4_4:+2204577 | Msa0663400:three_prime_UTR |
| ACAAAAGTGATTAACTAAAT+TGG | 0.262326 | 4_4:-2204649 | None:intergenic |
| CCTGTTGCCGCCCCTGCTGC+TGG | 0.273301 | 4_4:+2203631 | Msa0663400:CDS |
| GCCCCTGCTGCTGGAATTCC+AGG | 0.275871 | 4_4:+2203640 | Msa0663400:CDS |
| ATGGAGATTCTTACTGTTTG+TGG | 0.343710 | 4_4:-2202056 | None:intergenic |
| CCAGCAGCAGGGGCGGCAAC+AGG | 0.352403 | 4_4:-2203631 | None:intergenic |
| TCGCCTGGAATTCCAGCAGC+AGG | 0.403859 | 4_4:-2203643 | None:intergenic |
| ATGATATCCATTGGCTCGCC+TGG | 0.406108 | 4_4:-2203658 | None:intergenic |
| CTGTGCAAAGTTCCTTTGTA+TGG | 0.406738 | 4_4:+2204721 | Msa0663400:three_prime_UTR |
| TGCGAAGACACTTGGAGAAT+GGG | 0.446345 | 4_4:+2203879 | Msa0663400:CDS |
| TTGACGAGTTTAACATAGTC+AGG | 0.447855 | 4_4:-2203811 | None:intergenic |
| GTGCGAAGACACTTGGAGAA+TGG | 0.457537 | 4_4:+2203878 | Msa0663400:CDS |
| CTGCTCCTGTGTGGTGGTCA+AGG | 0.470678 | 4_4:+2204338 | Msa0663400:CDS |
| GTGCTGCAGAACAACATTGT+AGG | 0.480720 | 4_4:-2204470 | None:intergenic |
| CTGCCTTGCAACTTGTGCTT+AGG | 0.487542 | 4_4:+2203683 | Msa0663400:CDS |
| GGAAAAGCTAGGAAGGTAAC+TGG | 0.499679 | 4_4:+2204315 | Msa0663400:CDS |
| CGCCTGGAATTCCAGCAGCA+GGG | 0.501362 | 4_4:-2203642 | None:intergenic |
| CTTGCACGTGGCCTCCATGA+AGG | 0.502412 | 4_4:+2203727 | Msa0663400:CDS |
| GTTCCTAGTGCGAAGACACT+TGG | 0.512562 | 4_4:+2203871 | Msa0663400:CDS |
| TCTCCAAGTGTCTTCGCACT+AGG | 0.516396 | 4_4:-2203874 | None:intergenic |
| CTTAGGAAGTCACTGGCATA+TGG | 0.527492 | 4_4:+2203700 | Msa0663400:CDS |
| TGGAATTCCAGCAGCAGGGG+CGG | 0.535141 | 4_4:-2203638 | None:intergenic |
| GCCTGGAATTCCAGCAGCAG+GGG | 0.541122 | 4_4:-2203641 | None:intergenic |
| CGAGTTTAACATAGTCAGGC+TGG | 0.546098 | 4_4:-2203807 | None:intergenic |
| AGGAAGTCACTGGCATATGG+TGG | 0.559341 | 4_4:+2203703 | Msa0663400:CDS |
| AACTGGCTGCTCCTGTGTGG+TGG | 0.564611 | 4_4:+2204332 | Msa0663400:CDS |
| AGAAGCAAAATTCATTCTCA+AGG | 0.566617 | 4_4:-2204559 | None:intergenic |
| CTCACTGAACTCAACGCCGC+CGG | 0.569077 | 4_4:+2202017 | Msa0663400:CDS |
| AAGGCAGTCATGATATCCAT+TGG | 0.578468 | 4_4:-2203667 | None:intergenic |
| ACTTGTGCTTAGGAAGTCAC+TGG | 0.586574 | 4_4:+2203693 | Msa0663400:CDS |
| CTCCGAGGGAAAAGCTAGGA+AGG | 0.586953 | 4_4:+2204308 | Msa0663400:CDS |
| TGGAATTCCAGGCGAGCCAA+TGG | 0.589710 | 4_4:+2203651 | Msa0663400:CDS |
| ACGCCGCCGGAGTTCTTCGT+CGG | 0.592254 | 4_4:+2202030 | Msa0663400:CDS |
| TGGCTGCCGACGAAGAACTC+CGG | 0.602640 | 4_4:-2202036 | None:intergenic |
| CTTCCTAAGCACAAGTTGCA+AGG | 0.603957 | 4_4:-2203686 | None:intergenic |
| TGACTATGTTAAACTCGTCA+AGG | 0.611176 | 4_4:+2203813 | Msa0663400:CDS |
| GCATATGGTGGGCTTGCACG+TGG | 0.612030 | 4_4:+2203715 | Msa0663400:CDS |
| GGAAGTCACTGGCATATGGT+GGG | 0.612935 | 4_4:+2203704 | Msa0663400:CDS |
| AAGACACTTGGAGAATGGGC+TGG | 0.622300 | 4_4:+2203883 | Msa0663400:CDS |
| TTGACTCCGAGGGAAAAGCT+AGG | 0.623449 | 4_4:+2204304 | Msa0663400:CDS |
| GGTAACTGGCTGCTCCTGTG+TGG | 0.642490 | 4_4:+2204329 | Msa0663400:CDS |
| AAAGTAATTGAGAAGAACAC+AGG | 0.649204 | 4_4:+2203754 | Msa0663400:intron |
| TTGTGTAAGATTGACTCCGA+GGG | 0.654398 | 4_4:+2204294 | Msa0663400:CDS |
| CTGCCGACGAAGAACTCCGG+CGG | 0.657958 | 4_4:-2202033 | None:intergenic |
| AATGTCACGGTACCATACAA+AGG | 0.661583 | 4_4:-2204733 | None:intergenic |
| GTTGTGTAAGATTGACTCCG+AGG | 0.676451 | 4_4:+2204293 | Msa0663400:intron |
| ACTTCAGTGACATAATGTCA+CGG | 0.679250 | 4_4:-2204746 | None:intergenic |
| TTATACCTTGACCACCACAC+AGG | 0.686928 | 4_4:-2204343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATTTATTAAATTATT+GGG | - | chr4_4:2201791-2201810 | None:intergenic | 0.0% |
| !!! | TTTTAAATTTATTAAATTAT+TGG | - | chr4_4:2201792-2201811 | None:intergenic | 0.0% |
| !! | TTTAAATTTATTAAATTATT+GGG | - | chr4_4:2201791-2201810 | None:intergenic | 0.0% |
| !!! | TTTTAAATTTATTAAATTAT+TGG | - | chr4_4:2201792-2201811 | None:intergenic | 0.0% |
| !!! | AAAGTTTTTTGTTAATAATA+CGG | + | chr4_4:2201834-2201853 | Msa0663400:intron | 10.0% |
| !!! | TTTTGTTTATTTAATTTGAT+TGG | + | chr4_4:2202299-2202318 | Msa0663400:intron | 10.0% |
| !!! | AAAGTTTTTTGTTAATAATA+CGG | + | chr4_4:2201834-2201853 | Msa0663400:intron | 10.0% |
| !!! | TTTTGTTTATTTAATTTGAT+TGG | + | chr4_4:2202299-2202318 | Msa0663400:intron | 10.0% |
| !!! | TATTTTACTTCTATAGTTTA+AGG | - | chr4_4:2200941-2200960 | None:intergenic | 15.0% |
| !!! | GCAATTGTTTTTTTTTTTTT+TGG | + | chr4_4:2201400-2201419 | Msa0663400:intron | 15.0% |
| !!! | TTAAATTTAAGTTATAGAGA+AGG | + | chr4_4:2201615-2201634 | Msa0663400:intron | 15.0% |
| !!! | AAGTTTTTTGTTAATAATAC+GGG | + | chr4_4:2201835-2201854 | Msa0663400:intron | 15.0% |
| !!! | GTTGAATATGAATTTTAATA+CGG | + | chr4_4:2202213-2202232 | Msa0663400:intron | 15.0% |
| !!! | CAAGATTCTAAAAAAAAATA+TGG | - | chr4_4:2203041-2203060 | None:intergenic | 15.0% |
| !!! | TTTGTTGTATTAATTATTGT+TGG | + | chr4_4:2204257-2204276 | Msa0663400:intron | 15.0% |
| !!! | TATTTTACTTCTATAGTTTA+AGG | - | chr4_4:2200941-2200960 | None:intergenic | 15.0% |
| !!! | GCAATTGTTTTTTTTTTTTT+TGG | + | chr4_4:2201400-2201419 | Msa0663400:intron | 15.0% |
| !!! | TTAAATTTAAGTTATAGAGA+AGG | + | chr4_4:2201615-2201634 | Msa0663400:intron | 15.0% |
| !!! | AAGTTTTTTGTTAATAATAC+GGG | + | chr4_4:2201835-2201854 | Msa0663400:intron | 15.0% |
| !!! | GTTGAATATGAATTTTAATA+CGG | + | chr4_4:2202213-2202232 | Msa0663400:intron | 15.0% |
| !!! | CAAGATTCTAAAAAAAAATA+TGG | - | chr4_4:2203041-2203060 | None:intergenic | 15.0% |
| !!! | TTTGTTGTATTAATTATTGT+TGG | + | chr4_4:2204257-2204276 | Msa0663400:intron | 15.0% |
| !! | TTGAATGATTACAATAAAGA+AGG | + | chr4_4:2200984-2201003 | Msa0663400:intron | 20.0% |
| !! | AATGAGTCAAAGATTTATAA+GGG | - | chr4_4:2201142-2201161 | None:intergenic | 20.0% |
| !! | TAATGAGTCAAAGATTTATA+AGG | - | chr4_4:2201143-2201162 | None:intergenic | 20.0% |
| !! | GAAGAATATGTATAATTAGT+GGG | - | chr4_4:2201223-2201242 | None:intergenic | 20.0% |
| !! | AGAAGAATATGTATAATTAG+TGG | - | chr4_4:2201224-2201243 | None:intergenic | 20.0% |
| !! | AAAATCAATGGAAGAATAAA+TGG | + | chr4_4:2201271-2201290 | Msa0663400:intron | 20.0% |
| !! | AAATCAATGGAAGAATAAAT+GGG | + | chr4_4:2201272-2201291 | Msa0663400:intron | 20.0% |
| !!! | TCAAAAGGAATTTGTTAAAA+AGG | + | chr4_4:2201333-2201352 | Msa0663400:intron | 20.0% |
| !!! | AGTTTTTTGTTAATAATACG+GGG | + | chr4_4:2201836-2201855 | Msa0663400:intron | 20.0% |
| !! | ATTATATTAGGAATATAGGT+GGG | + | chr4_4:2201859-2201878 | Msa0663400:intron | 20.0% |
| !!! | TAAAGTATTGAAAAACTGAA+AGG | - | chr4_4:2202091-2202110 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTTTTTTTGTGC+AGG | + | chr4_4:2202127-2202146 | Msa0663400:intron | 20.0% |
| !!! | TATGAATTTTAATACGGATA+TGG | + | chr4_4:2202219-2202238 | Msa0663400:intron | 20.0% |
| !!! | GTAAAGAGACATAATTTTAT+TGG | + | chr4_4:2202326-2202345 | Msa0663400:intron | 20.0% |
| !!! | CAGAATATTGTTAATTTGAT+TGG | + | chr4_4:2202361-2202380 | Msa0663400:intron | 20.0% |
| !! | CAAAAAAAAAAACGACATAA+GGG | - | chr4_4:2202820-2202839 | None:intergenic | 20.0% |
| !! | ACAAAAAAAAAAACGACATA+AGG | - | chr4_4:2202821-2202840 | None:intergenic | 20.0% |
| !!! | TTATGTCGTTTTTTTTTTTG+TGG | + | chr4_4:2202820-2202839 | Msa0663400:intron | 20.0% |
| !!! | TTGCAATTTTTGATATTTGT+GGG | + | chr4_4:2202947-2202966 | Msa0663400:intron | 20.0% |
| !!! | AACAATTATGTCATGTTTTA+GGG | - | chr4_4:2203004-2203023 | None:intergenic | 20.0% |
| !!! | AACCATAATATCAAAGTTTT+TGG | - | chr4_4:2203340-2203359 | None:intergenic | 20.0% |
| !!! | TGATATTATGGTTATTTTTG+TGG | + | chr4_4:2203347-2203366 | Msa0663400:intron | 20.0% |
| !!! | ATTTCCATTCTGAAATTTAA+TGG | + | chr4_4:2203922-2203941 | Msa0663400:intron | 20.0% |
| !! | ATATCCATTAAATTTCAGAA+TGG | - | chr4_4:2203929-2203948 | None:intergenic | 20.0% |
| !! | AGTTCAATTCAAATATAGTT+TGG | - | chr4_4:2204051-2204070 | None:intergenic | 20.0% |
| !!! | TTGTAATGCGTTTTTATTAT+TGG | - | chr4_4:2204093-2204112 | None:intergenic | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | - | chr4_4:2204202-2204221 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | + | chr4_4:2204384-2204403 | Msa0663400:intron | 20.0% |
| !!! | TTTCTTTCATTTTCATTATG+TGG | + | chr4_4:2204532-2204551 | Msa0663400:three_prime_UTR | 20.0% |
| !! | ACAAAAGTGATTAACTAAAT+TGG | - | chr4_4:2204652-2204671 | None:intergenic | 20.0% |
| !! | TTGAATGATTACAATAAAGA+AGG | + | chr4_4:2200984-2201003 | Msa0663400:intron | 20.0% |
| !! | AATGAGTCAAAGATTTATAA+GGG | - | chr4_4:2201142-2201161 | None:intergenic | 20.0% |
| !! | TAATGAGTCAAAGATTTATA+AGG | - | chr4_4:2201143-2201162 | None:intergenic | 20.0% |
| !! | GAAGAATATGTATAATTAGT+GGG | - | chr4_4:2201223-2201242 | None:intergenic | 20.0% |
| !! | AGAAGAATATGTATAATTAG+TGG | - | chr4_4:2201224-2201243 | None:intergenic | 20.0% |
| !! | AAAATCAATGGAAGAATAAA+TGG | + | chr4_4:2201271-2201290 | Msa0663400:intron | 20.0% |
| !! | AAATCAATGGAAGAATAAAT+GGG | + | chr4_4:2201272-2201291 | Msa0663400:intron | 20.0% |
| !!! | TCAAAAGGAATTTGTTAAAA+AGG | + | chr4_4:2201333-2201352 | Msa0663400:intron | 20.0% |
| !!! | AGTTTTTTGTTAATAATACG+GGG | + | chr4_4:2201836-2201855 | Msa0663400:intron | 20.0% |
| !! | ATTATATTAGGAATATAGGT+GGG | + | chr4_4:2201859-2201878 | Msa0663400:intron | 20.0% |
| !!! | TAAAGTATTGAAAAACTGAA+AGG | - | chr4_4:2202091-2202110 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTTTTTTTGTGC+AGG | + | chr4_4:2202127-2202146 | Msa0663400:intron | 20.0% |
| !!! | TATGAATTTTAATACGGATA+TGG | + | chr4_4:2202219-2202238 | Msa0663400:intron | 20.0% |
| !!! | GTAAAGAGACATAATTTTAT+TGG | + | chr4_4:2202326-2202345 | Msa0663400:intron | 20.0% |
| !!! | CAGAATATTGTTAATTTGAT+TGG | + | chr4_4:2202361-2202380 | Msa0663400:intron | 20.0% |
| !! | CAAAAAAAAAAACGACATAA+GGG | - | chr4_4:2202820-2202839 | None:intergenic | 20.0% |
| !! | ACAAAAAAAAAAACGACATA+AGG | - | chr4_4:2202821-2202840 | None:intergenic | 20.0% |
| !!! | TTATGTCGTTTTTTTTTTTG+TGG | + | chr4_4:2202820-2202839 | Msa0663400:intron | 20.0% |
| !!! | TTGCAATTTTTGATATTTGT+GGG | + | chr4_4:2202947-2202966 | Msa0663400:intron | 20.0% |
| !!! | AACAATTATGTCATGTTTTA+GGG | - | chr4_4:2203004-2203023 | None:intergenic | 20.0% |
| !!! | AACCATAATATCAAAGTTTT+TGG | - | chr4_4:2203340-2203359 | None:intergenic | 20.0% |
| !!! | TGATATTATGGTTATTTTTG+TGG | + | chr4_4:2203347-2203366 | Msa0663400:intron | 20.0% |
| !!! | ATTTCCATTCTGAAATTTAA+TGG | + | chr4_4:2203922-2203941 | Msa0663400:intron | 20.0% |
| !! | ATATCCATTAAATTTCAGAA+TGG | - | chr4_4:2203929-2203948 | None:intergenic | 20.0% |
| !! | AGTTCAATTCAAATATAGTT+TGG | - | chr4_4:2204051-2204070 | None:intergenic | 20.0% |
| !!! | TTGTAATGCGTTTTTATTAT+TGG | - | chr4_4:2204093-2204112 | None:intergenic | 20.0% |
| !!! | AGATATGCTAATTAATTTTG+TGG | - | chr4_4:2204202-2204221 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCTTTTTTCGAT+TGG | + | chr4_4:2204384-2204403 | Msa0663400:intron | 20.0% |
| !!! | TTTCTTTCATTTTCATTATG+TGG | + | chr4_4:2204532-2204551 | Msa0663400:three_prime_UTR | 20.0% |
| !! | ACAAAAGTGATTAACTAAAT+TGG | - | chr4_4:2204652-2204671 | None:intergenic | 20.0% |
| !! | ACAAAGTTAGTTTCATGATA+AGG | + | chr4_4:2200706-2200725 | Msa0663400:intron | 25.0% |
| !! | CAAAGTTAGTTTCATGATAA+GGG | + | chr4_4:2200707-2200726 | Msa0663400:intron | 25.0% |
| ! | ATTTGTATGCCTAAAAATCA+AGG | - | chr4_4:2200771-2200790 | None:intergenic | 25.0% |
| !! | AATCATTCAAGCTTATGTTT+TGG | - | chr4_4:2200974-2200993 | None:intergenic | 25.0% |
| ! | TATTATAGGAAATGTGAATG+TGG | - | chr4_4:2201118-2201137 | None:intergenic | 25.0% |
| !!! | AGATTTATAAGGGGTATTAT+AGG | - | chr4_4:2201132-2201151 | None:intergenic | 25.0% |
| ! | ATGAGTCAAAGATTTATAAG+GGG | - | chr4_4:2201141-2201160 | None:intergenic | 25.0% |
| !! | TTTCAAGTATAAATTCAGAG+TGG | + | chr4_4:2201378-2201397 | Msa0663400:intron | 25.0% |
| !! | CTTTTTAACAATTGTTACTC+TGG | - | chr4_4:2201431-2201450 | None:intergenic | 25.0% |
| ! | ACAAGACAAAACAAAACAAA+AGG | + | chr4_4:2201451-2201470 | Msa0663400:intron | 25.0% |
| ! | TTTACATTTATCTCCGTTTA+AGG | + | chr4_4:2201689-2201708 | Msa0663400:intron | 25.0% |
| ! | AATAATACGGGGATTATATT+AGG | + | chr4_4:2201847-2201866 | Msa0663400:intron | 25.0% |
| ! | GATTATATTAGGAATATAGG+TGG | + | chr4_4:2201858-2201877 | Msa0663400:intron | 25.0% |
| ! | TATTGTTCTTGTAATAATCC+AGG | + | chr4_4:2201894-2201913 | Msa0663400:intron | 25.0% |
| !!! | TAGGGTTTTGTTTGTTTTAA+GGG | - | chr4_4:2201939-2201958 | None:intergenic | 25.0% |
| !!! | TTAGGGTTTTGTTTGTTTTA+AGG | - | chr4_4:2201940-2201959 | None:intergenic | 25.0% |
| ! | GATGATGAATTGTGATATTA+GGG | - | chr4_4:2201957-2201976 | None:intergenic | 25.0% |
| ! | AGATGATGAATTGTGATATT+AGG | - | chr4_4:2201958-2201977 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTTCAAATCTACA+AGG | + | chr4_4:2202160-2202179 | Msa0663400:intron | 25.0% |
| !! | TAATTTGATTGGAGTATTAG+AGG | + | chr4_4:2202372-2202391 | Msa0663400:intron | 25.0% |
| ! | ATCATTTGTGAAACTGTTTA+TGG | + | chr4_4:2202437-2202456 | Msa0663400:intron | 25.0% |
| ! | TCATTTGTGAAACTGTTTAT+GGG | + | chr4_4:2202438-2202457 | Msa0663400:intron | 25.0% |
| !!! | TTTTTTCATAAACGCTTTAC+AGG | - | chr4_4:2202639-2202658 | None:intergenic | 25.0% |
| ! | CAAAAATAAGCTAATCCATA+CGG | + | chr4_4:2202776-2202795 | Msa0663400:intron | 25.0% |
| ! | AAAAATAAGCTAATCCATAC+GGG | + | chr4_4:2202777-2202796 | Msa0663400:intron | 25.0% |
| ! | GACAATGTATAATATATGCA+AGG | - | chr4_4:2202868-2202887 | None:intergenic | 25.0% |
| !! | GTTGCAATTTTTGATATTTG+TGG | + | chr4_4:2202946-2202965 | Msa0663400:intron | 25.0% |
| !!! | ACAATTATGTCATGTTTTAG+GGG | - | chr4_4:2203003-2203022 | None:intergenic | 25.0% |
| !! | CAACAATTATGTCATGTTTT+AGG | - | chr4_4:2203005-2203024 | None:intergenic | 25.0% |
| ! | CACCAAAAACTTTGATATTA+TGG | + | chr4_4:2203335-2203354 | Msa0663400:intron | 25.0% |
| ! | CAAATTACACAAACAAAAGA+AGG | - | chr4_4:2203471-2203490 | None:intergenic | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | + | chr4_4:2203552-2203571 | Msa0663400:intron | 25.0% |
| ! | TTACTTGTTTGTTTATGCAT+TGG | + | chr4_4:2203982-2204001 | Msa0663400:intron | 25.0% |
| ! | TACTTGTTTGTTTATGCATT+GGG | + | chr4_4:2203983-2204002 | Msa0663400:intron | 25.0% |
| ! | AACGCATTACAAAAAATGAA+TGG | + | chr4_4:2204101-2204120 | Msa0663400:intron | 25.0% |
| ! | ACGCATTACAAAAAATGAAT+GGG | + | chr4_4:2204102-2204121 | Msa0663400:intron | 25.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | + | chr4_4:2204140-2204159 | Msa0663400:intron | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | - | chr4_4:2204194-2204213 | None:intergenic | 25.0% |
| ! | TGAAAGAAAAACACAATGTA+TGG | - | chr4_4:2204521-2204540 | None:intergenic | 25.0% |
| !!! | TAATCACTTTTGTTTTGCTA+TGG | + | chr4_4:2204659-2204678 | Msa0663400:three_prime_UTR | 25.0% |
| !! | ACAAAGTTAGTTTCATGATA+AGG | + | chr4_4:2200706-2200725 | Msa0663400:intron | 25.0% |
| !! | CAAAGTTAGTTTCATGATAA+GGG | + | chr4_4:2200707-2200726 | Msa0663400:intron | 25.0% |
| ! | ATTTGTATGCCTAAAAATCA+AGG | - | chr4_4:2200771-2200790 | None:intergenic | 25.0% |
| !! | AATCATTCAAGCTTATGTTT+TGG | - | chr4_4:2200974-2200993 | None:intergenic | 25.0% |
| ! | TATTATAGGAAATGTGAATG+TGG | - | chr4_4:2201118-2201137 | None:intergenic | 25.0% |
| !!! | AGATTTATAAGGGGTATTAT+AGG | - | chr4_4:2201132-2201151 | None:intergenic | 25.0% |
| ! | ATGAGTCAAAGATTTATAAG+GGG | - | chr4_4:2201141-2201160 | None:intergenic | 25.0% |
| !! | TTTCAAGTATAAATTCAGAG+TGG | + | chr4_4:2201378-2201397 | Msa0663400:intron | 25.0% |
| !! | CTTTTTAACAATTGTTACTC+TGG | - | chr4_4:2201431-2201450 | None:intergenic | 25.0% |
| ! | ACAAGACAAAACAAAACAAA+AGG | + | chr4_4:2201451-2201470 | Msa0663400:intron | 25.0% |
| ! | TTTACATTTATCTCCGTTTA+AGG | + | chr4_4:2201689-2201708 | Msa0663400:intron | 25.0% |
| ! | AATAATACGGGGATTATATT+AGG | + | chr4_4:2201847-2201866 | Msa0663400:intron | 25.0% |
| ! | GATTATATTAGGAATATAGG+TGG | + | chr4_4:2201858-2201877 | Msa0663400:intron | 25.0% |
| ! | TATTGTTCTTGTAATAATCC+AGG | + | chr4_4:2201894-2201913 | Msa0663400:intron | 25.0% |
| !!! | TAGGGTTTTGTTTGTTTTAA+GGG | - | chr4_4:2201939-2201958 | None:intergenic | 25.0% |
| !!! | TTAGGGTTTTGTTTGTTTTA+AGG | - | chr4_4:2201940-2201959 | None:intergenic | 25.0% |
| ! | GATGATGAATTGTGATATTA+GGG | - | chr4_4:2201957-2201976 | None:intergenic | 25.0% |
| ! | AGATGATGAATTGTGATATT+AGG | - | chr4_4:2201958-2201977 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTTCAAATCTACA+AGG | + | chr4_4:2202160-2202179 | Msa0663400:intron | 25.0% |
| !! | TAATTTGATTGGAGTATTAG+AGG | + | chr4_4:2202372-2202391 | Msa0663400:intron | 25.0% |
| ! | ATCATTTGTGAAACTGTTTA+TGG | + | chr4_4:2202437-2202456 | Msa0663400:intron | 25.0% |
| ! | TCATTTGTGAAACTGTTTAT+GGG | + | chr4_4:2202438-2202457 | Msa0663400:intron | 25.0% |
| !!! | TTTTTTCATAAACGCTTTAC+AGG | - | chr4_4:2202639-2202658 | None:intergenic | 25.0% |
| ! | CAAAAATAAGCTAATCCATA+CGG | + | chr4_4:2202776-2202795 | Msa0663400:intron | 25.0% |
| ! | AAAAATAAGCTAATCCATAC+GGG | + | chr4_4:2202777-2202796 | Msa0663400:intron | 25.0% |
| ! | GACAATGTATAATATATGCA+AGG | - | chr4_4:2202868-2202887 | None:intergenic | 25.0% |
| !! | GTTGCAATTTTTGATATTTG+TGG | + | chr4_4:2202946-2202965 | Msa0663400:intron | 25.0% |
| !!! | ACAATTATGTCATGTTTTAG+GGG | - | chr4_4:2203003-2203022 | None:intergenic | 25.0% |
| !! | CAACAATTATGTCATGTTTT+AGG | - | chr4_4:2203005-2203024 | None:intergenic | 25.0% |
| ! | CACCAAAAACTTTGATATTA+TGG | + | chr4_4:2203335-2203354 | Msa0663400:intron | 25.0% |
| ! | CAAATTACACAAACAAAAGA+AGG | - | chr4_4:2203471-2203490 | None:intergenic | 25.0% |
| ! | TCTAAGTAACAATTCATCTA+TGG | + | chr4_4:2203552-2203571 | Msa0663400:intron | 25.0% |
| ! | TTACTTGTTTGTTTATGCAT+TGG | + | chr4_4:2203982-2204001 | Msa0663400:intron | 25.0% |
| ! | TACTTGTTTGTTTATGCATT+GGG | + | chr4_4:2203983-2204002 | Msa0663400:intron | 25.0% |
| ! | AACGCATTACAAAAAATGAA+TGG | + | chr4_4:2204101-2204120 | Msa0663400:intron | 25.0% |
| ! | ACGCATTACAAAAAATGAAT+GGG | + | chr4_4:2204102-2204121 | Msa0663400:intron | 25.0% |
| ! | CAAGCAAAATTAAAGAATGA+TGG | + | chr4_4:2204140-2204159 | Msa0663400:intron | 25.0% |
| !! | TAATTAATTTTGTGGTGTAG+TGG | - | chr4_4:2204194-2204213 | None:intergenic | 25.0% |
| ! | TGAAAGAAAAACACAATGTA+TGG | - | chr4_4:2204521-2204540 | None:intergenic | 25.0% |
| !!! | TAATCACTTTTGTTTTGCTA+TGG | + | chr4_4:2204659-2204678 | Msa0663400:three_prime_UTR | 25.0% |
| AAACATCATAAATTGCATGG+AGG | - | chr4_4:2200796-2200815 | None:intergenic | 30.0% | |
| ATTTATGATGTTTCCCCATT+TGG | + | chr4_4:2200803-2200822 | Msa0663400:intron | 30.0% | |
| AAAGGAGTTTGTAACCAAAT+GGG | - | chr4_4:2200820-2200839 | None:intergenic | 30.0% | |
| TAAAGGAGTTTGTAACCAAA+TGG | - | chr4_4:2200821-2200840 | None:intergenic | 30.0% | |
| TTTGGTTACAAACTCCTTTA+AGG | + | chr4_4:2200821-2200840 | Msa0663400:intron | 30.0% | |
| ACGTGACTTTCATTTATAAG+TGG | + | chr4_4:2200878-2200897 | Msa0663400:intron | 30.0% | |
| AATTAGAGAGAATCCATAGA+AGG | + | chr4_4:2201010-2201029 | Msa0663400:intron | 30.0% | |
| TATAAATAAGAGAGAGCCAA+GGG | - | chr4_4:2201090-2201109 | None:intergenic | 30.0% | |
| TTATAAATAAGAGAGAGCCA+AGG | - | chr4_4:2201091-2201110 | None:intergenic | 30.0% | |
| TTTCTACGTTAACTCTCTTA+TGG | - | chr4_4:2201197-2201216 | None:intergenic | 30.0% | |
| ! | ATGATACTCCCTTTAAAAAC+TGG | + | chr4_4:2201295-2201314 | Msa0663400:intron | 30.0% |
| ! | TGATACTCCCTTTAAAAACT+GGG | + | chr4_4:2201296-2201315 | Msa0663400:intron | 30.0% |
| ! | ATATGGTCCCAGTTTTTAAA+GGG | - | chr4_4:2201306-2201325 | None:intergenic | 30.0% |
| ! | TTCCTTTTGAATTGTCGATA+TGG | - | chr4_4:2201323-2201342 | None:intergenic | 30.0% |
| GAATGTAAGATTCTTTGCAT+TGG | - | chr4_4:2201650-2201669 | None:intergenic | 30.0% | |
| GGGGATTATATTAGGAATAT+AGG | + | chr4_4:2201855-2201874 | Msa0663400:intron | 30.0% | |
| AAATCTACAAGGAAAATGTC+AGG | + | chr4_4:2202171-2202190 | Msa0663400:intron | 30.0% | |
| AATCTACAAGGAAAATGTCA+GGG | + | chr4_4:2202172-2202191 | Msa0663400:intron | 30.0% | |
| CAAATAAGTCCAATTCAAAC+AGG | - | chr4_4:2202398-2202417 | None:intergenic | 30.0% | |
| ! | GTTTTCACTAACAAATAGTC+TGG | - | chr4_4:2202703-2202722 | None:intergenic | 30.0% |
| !!! | TGTCGTTTTTTTTTTTGTGG+TGG | + | chr4_4:2202823-2202842 | Msa0663400:intron | 30.0% |
| TATAATATATGCAAGGTCCA+GGG | - | chr4_4:2202861-2202880 | None:intergenic | 30.0% | |
| ! | TTTTGATATTTGTGGGTACA+CGG | + | chr4_4:2202954-2202973 | Msa0663400:intron | 30.0% |
| TGACATAATTGTTGCAATTG+CGG | + | chr4_4:2203011-2203030 | Msa0663400:intron | 30.0% | |
| !! | TCTTGTGTGGTTTGTTTATT+TGG | + | chr4_4:2203092-2203111 | Msa0663400:intron | 30.0% |
| TAAGAATTGCAACTTAGACA+CGG | - | chr4_4:2203164-2203183 | None:intergenic | 30.0% | |
| TCTAAGTTGCAATTCTTACA+TGG | + | chr4_4:2203166-2203185 | Msa0663400:intron | 30.0% | |
| CTAAGTTGCAATTCTTACAT+GGG | + | chr4_4:2203167-2203186 | Msa0663400:intron | 30.0% | |
| CGCAAATCGCAATATAAAAA+TGG | - | chr4_4:2203249-2203268 | None:intergenic | 30.0% | |
| !!! | TATGGTTATTTTTGTGGTTG+TGG | + | chr4_4:2203353-2203372 | Msa0663400:intron | 30.0% |
| !!! | ATGGTTATTTTTGTGGTTGT+GGG | + | chr4_4:2203354-2203373 | Msa0663400:intron | 30.0% |
| CATGACAATGATTCTCTATA+AGG | + | chr4_4:2203425-2203444 | Msa0663400:intron | 30.0% | |
| AAAGTAATTGAGAAGAACAC+AGG | + | chr4_4:2203754-2203773 | Msa0663400:intron | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | + | chr4_4:2204106-2204125 | Msa0663400:intron | 30.0% | |
| AGAAGCAAAATTCATTCTCA+AGG | - | chr4_4:2204562-2204581 | None:intergenic | 30.0% | |
| ! | GAATGAATTTTGCTTCTAGT+TGG | + | chr4_4:2204565-2204584 | Msa0663400:three_prime_UTR | 30.0% |
| ! | CAATATGATTTTGCTACTCT+CGG | + | chr4_4:2204612-2204631 | Msa0663400:three_prime_UTR | 30.0% |
| AAACATCATAAATTGCATGG+AGG | - | chr4_4:2200796-2200815 | None:intergenic | 30.0% | |
| ATTTATGATGTTTCCCCATT+TGG | + | chr4_4:2200803-2200822 | Msa0663400:intron | 30.0% | |
| AAAGGAGTTTGTAACCAAAT+GGG | - | chr4_4:2200820-2200839 | None:intergenic | 30.0% | |
| TAAAGGAGTTTGTAACCAAA+TGG | - | chr4_4:2200821-2200840 | None:intergenic | 30.0% | |
| TTTGGTTACAAACTCCTTTA+AGG | + | chr4_4:2200821-2200840 | Msa0663400:intron | 30.0% | |
| ACGTGACTTTCATTTATAAG+TGG | + | chr4_4:2200878-2200897 | Msa0663400:intron | 30.0% | |
| AATTAGAGAGAATCCATAGA+AGG | + | chr4_4:2201010-2201029 | Msa0663400:intron | 30.0% | |
| TATAAATAAGAGAGAGCCAA+GGG | - | chr4_4:2201090-2201109 | None:intergenic | 30.0% | |
| TTATAAATAAGAGAGAGCCA+AGG | - | chr4_4:2201091-2201110 | None:intergenic | 30.0% | |
| TTTCTACGTTAACTCTCTTA+TGG | - | chr4_4:2201197-2201216 | None:intergenic | 30.0% | |
| ! | ATGATACTCCCTTTAAAAAC+TGG | + | chr4_4:2201295-2201314 | Msa0663400:intron | 30.0% |
| ! | TGATACTCCCTTTAAAAACT+GGG | + | chr4_4:2201296-2201315 | Msa0663400:intron | 30.0% |
| ! | ATATGGTCCCAGTTTTTAAA+GGG | - | chr4_4:2201306-2201325 | None:intergenic | 30.0% |
| ! | TTCCTTTTGAATTGTCGATA+TGG | - | chr4_4:2201323-2201342 | None:intergenic | 30.0% |
| GAATGTAAGATTCTTTGCAT+TGG | - | chr4_4:2201650-2201669 | None:intergenic | 30.0% | |
| GGGGATTATATTAGGAATAT+AGG | + | chr4_4:2201855-2201874 | Msa0663400:intron | 30.0% | |
| AAATCTACAAGGAAAATGTC+AGG | + | chr4_4:2202171-2202190 | Msa0663400:intron | 30.0% | |
| AATCTACAAGGAAAATGTCA+GGG | + | chr4_4:2202172-2202191 | Msa0663400:intron | 30.0% | |
| CAAATAAGTCCAATTCAAAC+AGG | - | chr4_4:2202398-2202417 | None:intergenic | 30.0% | |
| ! | GTTTTCACTAACAAATAGTC+TGG | - | chr4_4:2202703-2202722 | None:intergenic | 30.0% |
| !!! | TGTCGTTTTTTTTTTTGTGG+TGG | + | chr4_4:2202823-2202842 | Msa0663400:intron | 30.0% |
| TATAATATATGCAAGGTCCA+GGG | - | chr4_4:2202861-2202880 | None:intergenic | 30.0% | |
| ! | TTTTGATATTTGTGGGTACA+CGG | + | chr4_4:2202954-2202973 | Msa0663400:intron | 30.0% |
| TGACATAATTGTTGCAATTG+CGG | + | chr4_4:2203011-2203030 | Msa0663400:intron | 30.0% | |
| !! | TCTTGTGTGGTTTGTTTATT+TGG | + | chr4_4:2203092-2203111 | Msa0663400:intron | 30.0% |
| TAAGAATTGCAACTTAGACA+CGG | - | chr4_4:2203164-2203183 | None:intergenic | 30.0% | |
| TCTAAGTTGCAATTCTTACA+TGG | + | chr4_4:2203166-2203185 | Msa0663400:intron | 30.0% | |
| CTAAGTTGCAATTCTTACAT+GGG | + | chr4_4:2203167-2203186 | Msa0663400:intron | 30.0% | |
| CGCAAATCGCAATATAAAAA+TGG | - | chr4_4:2203249-2203268 | None:intergenic | 30.0% | |
| !!! | TATGGTTATTTTTGTGGTTG+TGG | + | chr4_4:2203353-2203372 | Msa0663400:intron | 30.0% |
| !!! | ATGGTTATTTTTGTGGTTGT+GGG | + | chr4_4:2203354-2203373 | Msa0663400:intron | 30.0% |
| CATGACAATGATTCTCTATA+AGG | + | chr4_4:2203425-2203444 | Msa0663400:intron | 30.0% | |
| AAAGTAATTGAGAAGAACAC+AGG | + | chr4_4:2203754-2203773 | Msa0663400:intron | 30.0% | |
| ATTACAAAAAATGAATGGGC+AGG | + | chr4_4:2204106-2204125 | Msa0663400:intron | 30.0% | |
| AGAAGCAAAATTCATTCTCA+AGG | - | chr4_4:2204562-2204581 | None:intergenic | 30.0% | |
| ! | GAATGAATTTTGCTTCTAGT+TGG | + | chr4_4:2204565-2204584 | Msa0663400:three_prime_UTR | 30.0% |
| ! | CAATATGATTTTGCTACTCT+CGG | + | chr4_4:2204612-2204631 | Msa0663400:three_prime_UTR | 30.0% |
| GTATGCCTAAAAATCAAGGT+GGG | - | chr4_4:2200767-2200786 | None:intergenic | 35.0% | |
| TGTATGCCTAAAAATCAAGG+TGG | - | chr4_4:2200768-2200787 | None:intergenic | 35.0% | |
| GGGAAACATCATAAATTGCA+TGG | - | chr4_4:2200799-2200818 | None:intergenic | 35.0% | |
| AAGGAGTTTGTAACCAAATG+GGG | - | chr4_4:2200819-2200838 | None:intergenic | 35.0% | |
| AAAACTGCTCTTCTCCTTAA+AGG | - | chr4_4:2200838-2200857 | None:intergenic | 35.0% | |
| AGAATCCATAGAAGGAGAAT+AGG | + | chr4_4:2201018-2201037 | Msa0663400:intron | 35.0% | |
| GAATCCATAGAAGGAGAATA+GGG | + | chr4_4:2201019-2201038 | Msa0663400:intron | 35.0% | |
| ! | ATTTTCATGCCTTTTTCCCT+TGG | + | chr4_4:2201071-2201090 | Msa0663400:intron | 35.0% |
| TGACTCATTACACTCAACTT+TGG | + | chr4_4:2201153-2201172 | Msa0663400:intron | 35.0% | |
| ! | GATATGGTCCCAGTTTTTAA+AGG | - | chr4_4:2201307-2201326 | None:intergenic | 35.0% |
| GACCATATCGACAATTCAAA+AGG | + | chr4_4:2201318-2201337 | Msa0663400:intron | 35.0% | |
| GGTTTAGCCCTAATTAAAAG+CGG | + | chr4_4:2201498-2201517 | Msa0663400:intron | 35.0% | |
| GTTTAGCCCTAATTAAAAGC+GGG | + | chr4_4:2201499-2201518 | Msa0663400:intron | 35.0% | |
| !! | TGTTAGCCCGCTTTTAATTA+GGG | - | chr4_4:2201508-2201527 | None:intergenic | 35.0% |
| TAAGATTCTTTGCATTGGAC+AGG | - | chr4_4:2201645-2201664 | None:intergenic | 35.0% | |
| TCATTGTGAGTGTCCTTAAA+CGG | - | chr4_4:2201705-2201724 | None:intergenic | 35.0% | |
| TATTAGGAATATAGGTGGGT+TGG | + | chr4_4:2201863-2201882 | Msa0663400:intron | 35.0% | |
| AGGGCCTCTTCAAAAATATT+GGG | - | chr4_4:2201920-2201939 | None:intergenic | 35.0% | |
| AAGGGCCTCTTCAAAAATAT+TGG | - | chr4_4:2201921-2201940 | None:intergenic | 35.0% | |
| ATGGAGATTCTTACTGTTTG+TGG | - | chr4_4:2202059-2202078 | None:intergenic | 35.0% | |
| AACTGAAAGGAAAACGATGA+TGG | - | chr4_4:2202078-2202097 | None:intergenic | 35.0% | |
| TATTAGAGGCCTGTTTGAAT+TGG | + | chr4_4:2202386-2202405 | Msa0663400:intron | 35.0% | |
| ACCTGCTAAATAAGCTGTTT+AGG | + | chr4_4:2202547-2202566 | Msa0663400:intron | 35.0% | |
| CCTGCTAAATAAGCTGTTTA+GGG | + | chr4_4:2202548-2202567 | Msa0663400:intron | 35.0% | |
| TAAGGGCTCTGTTTGAATAA+GGG | - | chr4_4:2202803-2202822 | None:intergenic | 35.0% | |
| ATAAGGGCTCTGTTTGAATA+AGG | - | chr4_4:2202804-2202823 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCC+AGG | + | chr4_4:2202828-2202847 | Msa0663400:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCCA+GGG | + | chr4_4:2202829-2202848 | Msa0663400:intron | 35.0% |
| GTATAATATATGCAAGGTCC+AGG | - | chr4_4:2202862-2202881 | None:intergenic | 35.0% | |
| TTTGATATTTGTGGGTACAC+GGG | + | chr4_4:2202955-2202974 | Msa0663400:intron | 35.0% | |
| ! | TTCTCTGTTCAGGACATTTT+TGG | + | chr4_4:2203191-2203210 | Msa0663400:intron | 35.0% |
| GCCAGAAAATGTGGATAAAT+GGG | + | chr4_4:2203281-2203300 | Msa0663400:intron | 35.0% | |
| CCAGAAAATGTGGATAAATG+GGG | + | chr4_4:2203282-2203301 | Msa0663400:intron | 35.0% | |
| CAGAAAATGTGGATAAATGG+GGG | + | chr4_4:2203283-2203302 | Msa0663400:intron | 35.0% | |
| AGAAAATGTGGATAAATGGG+GGG | + | chr4_4:2203284-2203303 | Msa0663400:intron | 35.0% | |
| TTGTCATGCAATGACGAAAT+AGG | - | chr4_4:2203413-2203432 | None:intergenic | 35.0% | |
| ATACAGAACAACACAAGACA+CGG | - | chr4_4:2203502-2203521 | None:intergenic | 35.0% | |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | + | chr4_4:2203505-2203524 | Msa0663400:intron | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | + | chr4_4:2203588-2203607 | Msa0663400:intron | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | - | chr4_4:2203744-2203763 | None:intergenic | 35.0% |
| TTGACGAGTTTAACATAGTC+AGG | - | chr4_4:2203814-2203833 | None:intergenic | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | + | chr4_4:2203813-2203832 | Msa0663400:CDS | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | + | chr4_4:2203995-2204014 | Msa0663400:intron | 35.0% | |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | - | chr4_4:2204191-2204210 | None:intergenic | 35.0% |
| CACATTCAACAGTTAAAACC+AGG | - | chr4_4:2204417-2204436 | None:intergenic | 35.0% | |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | + | chr4_4:2204415-2204434 | Msa0663400:intron | 35.0% |
| !! | CTTCTAGTTGGTGTTATCTA+AGG | + | chr4_4:2204577-2204596 | Msa0663400:three_prime_UTR | 35.0% |
| ACTTCAGTGACATAATGTCA+CGG | - | chr4_4:2204749-2204768 | None:intergenic | 35.0% | |
| GTATGCCTAAAAATCAAGGT+GGG | - | chr4_4:2200767-2200786 | None:intergenic | 35.0% | |
| TGTATGCCTAAAAATCAAGG+TGG | - | chr4_4:2200768-2200787 | None:intergenic | 35.0% | |
| GGGAAACATCATAAATTGCA+TGG | - | chr4_4:2200799-2200818 | None:intergenic | 35.0% | |
| AAGGAGTTTGTAACCAAATG+GGG | - | chr4_4:2200819-2200838 | None:intergenic | 35.0% | |
| AAAACTGCTCTTCTCCTTAA+AGG | - | chr4_4:2200838-2200857 | None:intergenic | 35.0% | |
| AGAATCCATAGAAGGAGAAT+AGG | + | chr4_4:2201018-2201037 | Msa0663400:intron | 35.0% | |
| GAATCCATAGAAGGAGAATA+GGG | + | chr4_4:2201019-2201038 | Msa0663400:intron | 35.0% | |
| ! | ATTTTCATGCCTTTTTCCCT+TGG | + | chr4_4:2201071-2201090 | Msa0663400:intron | 35.0% |
| TGACTCATTACACTCAACTT+TGG | + | chr4_4:2201153-2201172 | Msa0663400:intron | 35.0% | |
| ! | GATATGGTCCCAGTTTTTAA+AGG | - | chr4_4:2201307-2201326 | None:intergenic | 35.0% |
| GACCATATCGACAATTCAAA+AGG | + | chr4_4:2201318-2201337 | Msa0663400:intron | 35.0% | |
| GGTTTAGCCCTAATTAAAAG+CGG | + | chr4_4:2201498-2201517 | Msa0663400:intron | 35.0% | |
| GTTTAGCCCTAATTAAAAGC+GGG | + | chr4_4:2201499-2201518 | Msa0663400:intron | 35.0% | |
| !! | TGTTAGCCCGCTTTTAATTA+GGG | - | chr4_4:2201508-2201527 | None:intergenic | 35.0% |
| TAAGATTCTTTGCATTGGAC+AGG | - | chr4_4:2201645-2201664 | None:intergenic | 35.0% | |
| TCATTGTGAGTGTCCTTAAA+CGG | - | chr4_4:2201705-2201724 | None:intergenic | 35.0% | |
| TATTAGGAATATAGGTGGGT+TGG | + | chr4_4:2201863-2201882 | Msa0663400:intron | 35.0% | |
| AGGGCCTCTTCAAAAATATT+GGG | - | chr4_4:2201920-2201939 | None:intergenic | 35.0% | |
| AAGGGCCTCTTCAAAAATAT+TGG | - | chr4_4:2201921-2201940 | None:intergenic | 35.0% | |
| ATGGAGATTCTTACTGTTTG+TGG | - | chr4_4:2202059-2202078 | None:intergenic | 35.0% | |
| AACTGAAAGGAAAACGATGA+TGG | - | chr4_4:2202078-2202097 | None:intergenic | 35.0% | |
| TATTAGAGGCCTGTTTGAAT+TGG | + | chr4_4:2202386-2202405 | Msa0663400:intron | 35.0% | |
| ACCTGCTAAATAAGCTGTTT+AGG | + | chr4_4:2202547-2202566 | Msa0663400:intron | 35.0% | |
| CCTGCTAAATAAGCTGTTTA+GGG | + | chr4_4:2202548-2202567 | Msa0663400:intron | 35.0% | |
| TAAGGGCTCTGTTTGAATAA+GGG | - | chr4_4:2202803-2202822 | None:intergenic | 35.0% | |
| ATAAGGGCTCTGTTTGAATA+AGG | - | chr4_4:2202804-2202823 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCC+AGG | + | chr4_4:2202828-2202847 | Msa0663400:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCCA+GGG | + | chr4_4:2202829-2202848 | Msa0663400:intron | 35.0% |
| GTATAATATATGCAAGGTCC+AGG | - | chr4_4:2202862-2202881 | None:intergenic | 35.0% | |
| TTTGATATTTGTGGGTACAC+GGG | + | chr4_4:2202955-2202974 | Msa0663400:intron | 35.0% | |
| ! | TTCTCTGTTCAGGACATTTT+TGG | + | chr4_4:2203191-2203210 | Msa0663400:intron | 35.0% |
| GCCAGAAAATGTGGATAAAT+GGG | + | chr4_4:2203281-2203300 | Msa0663400:intron | 35.0% | |
| CCAGAAAATGTGGATAAATG+GGG | + | chr4_4:2203282-2203301 | Msa0663400:intron | 35.0% | |
| CAGAAAATGTGGATAAATGG+GGG | + | chr4_4:2203283-2203302 | Msa0663400:intron | 35.0% | |
| AGAAAATGTGGATAAATGGG+GGG | + | chr4_4:2203284-2203303 | Msa0663400:intron | 35.0% | |
| TTGTCATGCAATGACGAAAT+AGG | - | chr4_4:2203413-2203432 | None:intergenic | 35.0% | |
| ATACAGAACAACACAAGACA+CGG | - | chr4_4:2203502-2203521 | None:intergenic | 35.0% | |
| ! | CTTGTGTTGTTCTGTATGTT+TGG | + | chr4_4:2203505-2203524 | Msa0663400:intron | 35.0% |
| !! | GATATTTTTGCTATGCAGTG+AGG | + | chr4_4:2203588-2203607 | Msa0663400:intron | 35.0% |
| !! | CAATTACTTTTGCACCTTCA+TGG | - | chr4_4:2203744-2203763 | None:intergenic | 35.0% |
| TTGACGAGTTTAACATAGTC+AGG | - | chr4_4:2203814-2203833 | None:intergenic | 35.0% | |
| TGACTATGTTAAACTCGTCA+AGG | + | chr4_4:2203813-2203832 | Msa0663400:CDS | 35.0% | |
| TATGCATTGGGATACTTATC+AGG | + | chr4_4:2203995-2204014 | Msa0663400:intron | 35.0% | |
| ! | TTAATTTTGTGGTGTAGTGG+TGG | - | chr4_4:2204191-2204210 | None:intergenic | 35.0% |
| CACATTCAACAGTTAAAACC+AGG | - | chr4_4:2204417-2204436 | None:intergenic | 35.0% | |
| !!! | CTGGTTTTAACTGTTGAATG+TGG | + | chr4_4:2204415-2204434 | Msa0663400:intron | 35.0% |
| !! | CTTCTAGTTGGTGTTATCTA+AGG | + | chr4_4:2204577-2204596 | Msa0663400:three_prime_UTR | 35.0% |
| ACTTCAGTGACATAATGTCA+CGG | - | chr4_4:2204749-2204768 | None:intergenic | 35.0% | |
| ! | CACAACCCACCTTGATTTTT+AGG | + | chr4_4:2200759-2200778 | Msa0663400:intron | 40.0% |
| CTATCCCTATTCTCCTTCTA+TGG | - | chr4_4:2201026-2201045 | None:intergenic | 40.0% | |
| !! | GTGTTAGCCCGCTTTTAATT+AGG | - | chr4_4:2201509-2201528 | None:intergenic | 40.0% |
| CTCTTCAAAAATATTGGGCC+TGG | - | chr4_4:2201915-2201934 | None:intergenic | 40.0% | |
| !! | CAGGCCCAATATTTTTGAAG+AGG | + | chr4_4:2201913-2201932 | Msa0663400:intron | 40.0% |
| TGCATTCATCACAAACTCGT+TGG | + | chr4_4:2201979-2201998 | Msa0663400:intron | 40.0% | |
| TCATCACAAACTCGTTGGAT+TGG | + | chr4_4:2201984-2202003 | Msa0663400:intron | 40.0% | |
| CCCTAAACAGCTTATTTAGC+AGG | - | chr4_4:2202551-2202570 | None:intergenic | 40.0% | |
| ! | TAAGCTGTTTAGGGCTTGTT+TGG | + | chr4_4:2202557-2202576 | Msa0663400:intron | 40.0% |
| !! | GCTTGTGTAGTTTGTTTGTC+TGG | + | chr4_4:2203120-2203139 | Msa0663400:intron | 40.0% |
| TTACATGGGTTTCTCTGTTC+AGG | + | chr4_4:2203181-2203200 | Msa0663400:intron | 40.0% | |
| CTTGATATCGCCAGAAAATG+TGG | + | chr4_4:2203272-2203291 | Msa0663400:intron | 40.0% | |
| CGCCAGAAAATGTGGATAAA+TGG | + | chr4_4:2203280-2203299 | Msa0663400:intron | 40.0% | |
| ! | CCCCATTTATCCACATTTTC+TGG | - | chr4_4:2203285-2203304 | None:intergenic | 40.0% |
| GTTGTTCTGTATGTTTGGTC+TGG | + | chr4_4:2203510-2203529 | Msa0663400:intron | 40.0% | |
| AAGGCAGTCATGATATCCAT+TGG | - | chr4_4:2203670-2203689 | None:intergenic | 40.0% | |
| !! | TTACTTTTGCACCTTCATGG+AGG | - | chr4_4:2203741-2203760 | None:intergenic | 40.0% |
| GTCAATCTTACACAACTGCA+AGG | - | chr4_4:2204289-2204308 | None:intergenic | 40.0% | |
| ! | TTGTGTAAGATTGACTCCGA+GGG | + | chr4_4:2204294-2204313 | Msa0663400:CDS | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | + | chr4_4:2204396-2204415 | Msa0663400:intron | 40.0% |
| CTGTGCAAAGTTCCTTTGTA+TGG | + | chr4_4:2204721-2204740 | Msa0663400:three_prime_UTR | 40.0% | |
| AATGTCACGGTACCATACAA+AGG | - | chr4_4:2204736-2204755 | None:intergenic | 40.0% | |
| ! | CACAACCCACCTTGATTTTT+AGG | + | chr4_4:2200759-2200778 | Msa0663400:intron | 40.0% |
| CTATCCCTATTCTCCTTCTA+TGG | - | chr4_4:2201026-2201045 | None:intergenic | 40.0% | |
| !! | GTGTTAGCCCGCTTTTAATT+AGG | - | chr4_4:2201509-2201528 | None:intergenic | 40.0% |
| CTCTTCAAAAATATTGGGCC+TGG | - | chr4_4:2201915-2201934 | None:intergenic | 40.0% | |
| !! | CAGGCCCAATATTTTTGAAG+AGG | + | chr4_4:2201913-2201932 | Msa0663400:intron | 40.0% |
| TGCATTCATCACAAACTCGT+TGG | + | chr4_4:2201979-2201998 | Msa0663400:intron | 40.0% | |
| TCATCACAAACTCGTTGGAT+TGG | + | chr4_4:2201984-2202003 | Msa0663400:intron | 40.0% | |
| CCCTAAACAGCTTATTTAGC+AGG | - | chr4_4:2202551-2202570 | None:intergenic | 40.0% | |
| ! | TAAGCTGTTTAGGGCTTGTT+TGG | + | chr4_4:2202557-2202576 | Msa0663400:intron | 40.0% |
| !! | GCTTGTGTAGTTTGTTTGTC+TGG | + | chr4_4:2203120-2203139 | Msa0663400:intron | 40.0% |
| TTACATGGGTTTCTCTGTTC+AGG | + | chr4_4:2203181-2203200 | Msa0663400:intron | 40.0% | |
| CTTGATATCGCCAGAAAATG+TGG | + | chr4_4:2203272-2203291 | Msa0663400:intron | 40.0% | |
| CGCCAGAAAATGTGGATAAA+TGG | + | chr4_4:2203280-2203299 | Msa0663400:intron | 40.0% | |
| ! | CCCCATTTATCCACATTTTC+TGG | - | chr4_4:2203285-2203304 | None:intergenic | 40.0% |
| GTTGTTCTGTATGTTTGGTC+TGG | + | chr4_4:2203510-2203529 | Msa0663400:intron | 40.0% | |
| AAGGCAGTCATGATATCCAT+TGG | - | chr4_4:2203670-2203689 | None:intergenic | 40.0% | |
| !! | TTACTTTTGCACCTTCATGG+AGG | - | chr4_4:2203741-2203760 | None:intergenic | 40.0% |
| GTCAATCTTACACAACTGCA+AGG | - | chr4_4:2204289-2204308 | None:intergenic | 40.0% | |
| ! | TTGTGTAAGATTGACTCCGA+GGG | + | chr4_4:2204294-2204313 | Msa0663400:CDS | 40.0% |
| !! | TTTTCGATTGGTGTTTTGCC+TGG | + | chr4_4:2204396-2204415 | Msa0663400:intron | 40.0% |
| CTGTGCAAAGTTCCTTTGTA+TGG | + | chr4_4:2204721-2204740 | Msa0663400:three_prime_UTR | 40.0% | |
| AATGTCACGGTACCATACAA+AGG | - | chr4_4:2204736-2204755 | None:intergenic | 40.0% | |
| AAGAGAGAGCCAAGGGAAAA+AGG | - | chr4_4:2201083-2201102 | None:intergenic | 45.0% | |
| TGTTTGAATAAGGGCCCGTA+TGG | - | chr4_4:2202794-2202813 | None:intergenic | 45.0% | |
| CGGGATTCATTCTGTAGTTG+TGG | + | chr4_4:2202974-2202993 | Msa0663400:intron | 45.0% | |
| TCTTATCTGTGCGTCTTGTG+TGG | + | chr4_4:2203079-2203098 | Msa0663400:intron | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | - | chr4_4:2203689-2203708 | None:intergenic | 45.0% | |
| ACTTGTGCTTAGGAAGTCAC+TGG | + | chr4_4:2203693-2203712 | Msa0663400:CDS | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | + | chr4_4:2203700-2203719 | Msa0663400:CDS | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | - | chr4_4:2203810-2203829 | None:intergenic | 45.0% | |
| TGCGAAGACACTTGGAGAAT+GGG | + | chr4_4:2203879-2203898 | Msa0663400:CDS | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | - | chr4_4:2204283-2204302 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | + | chr4_4:2204293-2204312 | Msa0663400:intron | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | - | chr4_4:2204313-2204332 | None:intergenic | 45.0% |
| GGAAAAGCTAGGAAGGTAAC+TGG | + | chr4_4:2204315-2204334 | Msa0663400:CDS | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | - | chr4_4:2204346-2204365 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | + | chr4_4:2204421-2204440 | Msa0663400:intron | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | - | chr4_4:2204473-2204492 | None:intergenic | 45.0% | |
| AAGAGAGAGCCAAGGGAAAA+AGG | - | chr4_4:2201083-2201102 | None:intergenic | 45.0% | |
| TGTTTGAATAAGGGCCCGTA+TGG | - | chr4_4:2202794-2202813 | None:intergenic | 45.0% | |
| CGGGATTCATTCTGTAGTTG+TGG | + | chr4_4:2202974-2202993 | Msa0663400:intron | 45.0% | |
| TCTTATCTGTGCGTCTTGTG+TGG | + | chr4_4:2203079-2203098 | Msa0663400:intron | 45.0% | |
| CTTCCTAAGCACAAGTTGCA+AGG | - | chr4_4:2203689-2203708 | None:intergenic | 45.0% | |
| ACTTGTGCTTAGGAAGTCAC+TGG | + | chr4_4:2203693-2203712 | Msa0663400:CDS | 45.0% | |
| CTTAGGAAGTCACTGGCATA+TGG | + | chr4_4:2203700-2203719 | Msa0663400:CDS | 45.0% | |
| CGAGTTTAACATAGTCAGGC+TGG | - | chr4_4:2203810-2203829 | None:intergenic | 45.0% | |
| TGCGAAGACACTTGGAGAAT+GGG | + | chr4_4:2203879-2203898 | Msa0663400:CDS | 45.0% | |
| CTTACACAACTGCAAGGAGA+AGG | - | chr4_4:2204283-2204302 | None:intergenic | 45.0% | |
| ! | GTTGTGTAAGATTGACTCCG+AGG | + | chr4_4:2204293-2204312 | Msa0663400:intron | 45.0% |
| !! | TACCTTCCTAGCTTTTCCCT+CGG | - | chr4_4:2204313-2204332 | None:intergenic | 45.0% |
| GGAAAAGCTAGGAAGGTAAC+TGG | + | chr4_4:2204315-2204334 | Msa0663400:CDS | 45.0% | |
| TTATACCTTGACCACCACAC+AGG | - | chr4_4:2204346-2204365 | None:intergenic | 45.0% | |
| TTAACTGTTGAATGTGGCCG+TGG | + | chr4_4:2204421-2204440 | Msa0663400:intron | 45.0% | |
| GTGCTGCAGAACAACATTGT+AGG | - | chr4_4:2204473-2204492 | None:intergenic | 45.0% | |
| !! | ATTTAAAAAATAAAAATCAA+TGG | + | chr4_4:2201259-2201278 | Msa0663400:intron | 5.0% |
| !!! | TTAACAATTATTTTTAAAAA+AGG | + | chr4_4:2201477-2201496 | Msa0663400:intron | 5.0% |
| !! | ATTTAAAAAATAAAAATCAA+TGG | + | chr4_4:2201259-2201278 | Msa0663400:intron | 5.0% |
| !!! | TTAACAATTATTTTTAAAAA+AGG | + | chr4_4:2201477-2201496 | Msa0663400:intron | 5.0% |
| GATGCAGCTGTTGCATGTTG+TGG | + | chr4_4:2203309-2203328 | Msa0663400:intron | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | - | chr4_4:2203661-2203680 | None:intergenic | 50.0% |
| CTGCCTTGCAACTTGTGCTT+AGG | + | chr4_4:2203683-2203702 | Msa0663400:CDS | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | + | chr4_4:2203703-2203722 | Msa0663400:CDS | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | + | chr4_4:2203704-2203723 | Msa0663400:CDS | 50.0% | |
| GTTCCTAGTGCGAAGACACT+TGG | + | chr4_4:2203871-2203890 | Msa0663400:CDS | 50.0% | |
| TCTCCAAGTGTCTTCGCACT+AGG | - | chr4_4:2203877-2203896 | None:intergenic | 50.0% | |
| GTGCGAAGACACTTGGAGAA+TGG | + | chr4_4:2203878-2203897 | Msa0663400:CDS | 50.0% | |
| AAGACACTTGGAGAATGGGC+TGG | + | chr4_4:2203883-2203902 | Msa0663400:CDS | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | - | chr4_4:2204181-2204200 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | + | chr4_4:2204304-2204323 | Msa0663400:CDS | 50.0% | |
| GATGCAGCTGTTGCATGTTG+TGG | + | chr4_4:2203309-2203328 | Msa0663400:intron | 50.0% | |
| !! | ATGATATCCATTGGCTCGCC+TGG | - | chr4_4:2203661-2203680 | None:intergenic | 50.0% |
| CTGCCTTGCAACTTGTGCTT+AGG | + | chr4_4:2203683-2203702 | Msa0663400:CDS | 50.0% | |
| AGGAAGTCACTGGCATATGG+TGG | + | chr4_4:2203703-2203722 | Msa0663400:CDS | 50.0% | |
| GGAAGTCACTGGCATATGGT+GGG | + | chr4_4:2203704-2203723 | Msa0663400:CDS | 50.0% | |
| GTTCCTAGTGCGAAGACACT+TGG | + | chr4_4:2203871-2203890 | Msa0663400:CDS | 50.0% | |
| TCTCCAAGTGTCTTCGCACT+AGG | - | chr4_4:2203877-2203896 | None:intergenic | 50.0% | |
| GTGCGAAGACACTTGGAGAA+TGG | + | chr4_4:2203878-2203897 | Msa0663400:CDS | 50.0% | |
| AAGACACTTGGAGAATGGGC+TGG | + | chr4_4:2203883-2203902 | Msa0663400:CDS | 50.0% | |
| GGTGTAGTGGTGGTTCTTGT+TGG | - | chr4_4:2204181-2204200 | None:intergenic | 50.0% | |
| TTGACTCCGAGGGAAAAGCT+AGG | + | chr4_4:2204304-2204323 | Msa0663400:CDS | 50.0% | |
| AAGGTCCAGGGTTTGAACCC+TGG | - | chr4_4:2202849-2202868 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_4:2202895-2202914 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_4:2202892-2202911 | Msa0663400:intron | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | + | chr4_4:2203651-2203670 | Msa0663400:CDS | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | + | chr4_4:2204308-2204327 | Msa0663400:CDS | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | + | chr4_4:2204426-2204445 | Msa0663400:intron | 55.0% | |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | + | chr4_4:2204433-2204452 | Msa0663400:intron | 55.0% |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | + | chr4_4:2204434-2204453 | Msa0663400:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | + | chr4_4:2204435-2204454 | Msa0663400:intron | 55.0% |
| CCTCCCCAAAATCCTGACCA+CGG | - | chr4_4:2204441-2204460 | None:intergenic | 55.0% | |
| AAGGTCCAGGGTTTGAACCC+TGG | - | chr4_4:2202849-2202868 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_4:2202895-2202914 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_4:2202892-2202911 | Msa0663400:intron | 55.0% | |
| TGGAATTCCAGGCGAGCCAA+TGG | + | chr4_4:2203651-2203670 | Msa0663400:CDS | 55.0% | |
| CTCCGAGGGAAAAGCTAGGA+AGG | + | chr4_4:2204308-2204327 | Msa0663400:CDS | 55.0% | |
| TGTTGAATGTGGCCGTGGTC+AGG | + | chr4_4:2204426-2204445 | Msa0663400:intron | 55.0% | |
| ! | TGTGGCCGTGGTCAGGATTT+TGG | + | chr4_4:2204433-2204452 | Msa0663400:intron | 55.0% |
| ! | GTGGCCGTGGTCAGGATTTT+GGG | + | chr4_4:2204434-2204453 | Msa0663400:intron | 55.0% |
| ! | TGGCCGTGGTCAGGATTTTG+GGG | + | chr4_4:2204435-2204454 | Msa0663400:intron | 55.0% |
| CCTCCCCAAAATCCTGACCA+CGG | - | chr4_4:2204441-2204460 | None:intergenic | 55.0% | |
| CTCACTGAACTCAACGCCGC+CGG | + | chr4_4:2202017-2202036 | Msa0663400:CDS | 60.0% | |
| TGGCTGCCGACGAAGAACTC+CGG | - | chr4_4:2202039-2202058 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | - | chr4_4:2203641-2203660 | None:intergenic | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | - | chr4_4:2203644-2203663 | None:intergenic | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | - | chr4_4:2203645-2203664 | None:intergenic | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | - | chr4_4:2203646-2203665 | None:intergenic | 60.0% | |
| !! | GCATATGGTGGGCTTGCACG+TGG | + | chr4_4:2203715-2203734 | Msa0663400:CDS | 60.0% |
| CTTGCACGTGGCCTCCATGA+AGG | + | chr4_4:2203727-2203746 | Msa0663400:CDS | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | + | chr4_4:2204329-2204348 | Msa0663400:CDS | 60.0% | |
| AACTGGCTGCTCCTGTGTGG+TGG | + | chr4_4:2204332-2204351 | Msa0663400:CDS | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | + | chr4_4:2204338-2204357 | Msa0663400:CDS | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | + | chr4_4:2204438-2204457 | Msa0663400:intron | 60.0% |
| CTCACTGAACTCAACGCCGC+CGG | + | chr4_4:2202017-2202036 | Msa0663400:CDS | 60.0% | |
| TGGCTGCCGACGAAGAACTC+CGG | - | chr4_4:2202039-2202058 | None:intergenic | 60.0% | |
| TGGAATTCCAGCAGCAGGGG+CGG | - | chr4_4:2203641-2203660 | None:intergenic | 60.0% | |
| GCCTGGAATTCCAGCAGCAG+GGG | - | chr4_4:2203644-2203663 | None:intergenic | 60.0% | |
| CGCCTGGAATTCCAGCAGCA+GGG | - | chr4_4:2203645-2203664 | None:intergenic | 60.0% | |
| TCGCCTGGAATTCCAGCAGC+AGG | - | chr4_4:2203646-2203665 | None:intergenic | 60.0% | |
| !! | GCATATGGTGGGCTTGCACG+TGG | + | chr4_4:2203715-2203734 | Msa0663400:CDS | 60.0% |
| CTTGCACGTGGCCTCCATGA+AGG | + | chr4_4:2203727-2203746 | Msa0663400:CDS | 60.0% | |
| GGTAACTGGCTGCTCCTGTG+TGG | + | chr4_4:2204329-2204348 | Msa0663400:CDS | 60.0% | |
| AACTGGCTGCTCCTGTGTGG+TGG | + | chr4_4:2204332-2204351 | Msa0663400:CDS | 60.0% | |
| CTGCTCCTGTGTGGTGGTCA+AGG | + | chr4_4:2204338-2204357 | Msa0663400:CDS | 60.0% | |
| !! | CCGTGGTCAGGATTTTGGGG+AGG | + | chr4_4:2204438-2204457 | Msa0663400:intron | 60.0% |
| ACGCCGCCGGAGTTCTTCGT+CGG | + | chr4_4:2202030-2202049 | Msa0663400:CDS | 65.0% | |
| CTGCCGACGAAGAACTCCGG+CGG | - | chr4_4:2202036-2202055 | None:intergenic | 65.0% | |
| GGTGGCCAGGGTTCAAACCC+TGG | + | chr4_4:2202841-2202860 | Msa0663400:intron | 65.0% | |
| GCCCCTGCTGCTGGAATTCC+AGG | + | chr4_4:2203640-2203659 | Msa0663400:CDS | 65.0% | |
| ACGCCGCCGGAGTTCTTCGT+CGG | + | chr4_4:2202030-2202049 | Msa0663400:CDS | 65.0% | |
| CTGCCGACGAAGAACTCCGG+CGG | - | chr4_4:2202036-2202055 | None:intergenic | 65.0% | |
| GGTGGCCAGGGTTCAAACCC+TGG | + | chr4_4:2202841-2202860 | Msa0663400:intron | 65.0% | |
| GCCCCTGCTGCTGGAATTCC+AGG | + | chr4_4:2203640-2203659 | Msa0663400:CDS | 65.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | - | chr4_4:2203634-2203653 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | + | chr4_4:2203631-2203650 | Msa0663400:CDS | 75.0% | |
| CCAGCAGCAGGGGCGGCAAC+AGG | - | chr4_4:2203634-2203653 | None:intergenic | 75.0% | |
| CCTGTTGCCGCCCCTGCTGC+TGG | + | chr4_4:2203631-2203650 | Msa0663400:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2200688 | 2204778 | 2200688 | ID=Msa0663400;Name=Msa0663400 |
| chr4_4 | mRNA | 2200688 | 2204778 | 2200688 | ID=Msa0663400-mRNA-1;Parent=Msa0663400;Name=Msa0663400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.4|0.33|0.83|0.4|0.5|6|271|155 |
| chr4_4 | exon | 2200688 | 2200691 | 2200688 | ID=Msa0663400-mRNA-1:exon:588;Parent=Msa0663400-mRNA-1 |
| chr4_4 | exon | 2202016 | 2202064 | 2202016 | ID=Msa0663400-mRNA-1:exon:589;Parent=Msa0663400-mRNA-1 |
| chr4_4 | exon | 2203606 | 2203756 | 2203606 | ID=Msa0663400-mRNA-1:exon:590;Parent=Msa0663400-mRNA-1 |
| chr4_4 | exon | 2203769 | 2203906 | 2203769 | ID=Msa0663400-mRNA-1:exon:591;Parent=Msa0663400-mRNA-1 |
| chr4_4 | exon | 2204294 | 2204359 | 2204294 | ID=Msa0663400-mRNA-1:exon:592;Parent=Msa0663400-mRNA-1 |
| chr4_4 | exon | 2204448 | 2204778 | 2204448 | ID=Msa0663400-mRNA-1:exon:593;Parent=Msa0663400-mRNA-1 |
| chr4_4 | CDS | 2200688 | 2200691 | 2200688 | ID=Msa0663400-mRNA-1:cds;Parent=Msa0663400-mRNA-1 |
| chr4_4 | CDS | 2202016 | 2202064 | 2202016 | ID=Msa0663400-mRNA-1:cds;Parent=Msa0663400-mRNA-1 |
| chr4_4 | CDS | 2203606 | 2203756 | 2203606 | ID=Msa0663400-mRNA-1:cds;Parent=Msa0663400-mRNA-1 |
| chr4_4 | CDS | 2203769 | 2203906 | 2203769 | ID=Msa0663400-mRNA-1:cds;Parent=Msa0663400-mRNA-1 |
| chr4_4 | CDS | 2204294 | 2204359 | 2204294 | ID=Msa0663400-mRNA-1:cds;Parent=Msa0663400-mRNA-1 |
| chr4_4 | CDS | 2204448 | 2204507 | 2204448 | ID=Msa0663400-mRNA-1:cds;Parent=Msa0663400-mRNA-1 |
| chr4_4 | three_prime_UTR | 2204508 | 2204778 | 2204508 | ID=Msa0663400-mRNA-1:three_prime_utr;Parent=Msa0663400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
