Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083460 | XP_024642198.2 | 91.374 | 313 | 25 | 2 | 109 | 420 | 375 | 686 | 0.0 | 582 |
| Msa0083460 | XP_024642198.2 | 98.387 | 124 | 2 | 0 | 1 | 124 | 1 | 124 | 3.36e-77 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083460 | sp|Q9SZL8|FRS5_ARATH | 40.134 | 299 | 175 | 4 | 121 | 417 | 411 | 707 | 1.35e-63 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083460 | A0A396JW00 | 91.374 | 313 | 25 | 2 | 109 | 420 | 375 | 686 | 0.0 | 582 |
| Msa0083460 | A0A396JW00 | 98.387 | 124 | 2 | 0 | 1 | 124 | 1 | 124 | 1.61e-77 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0083460 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083460 | Msa0132760 | 0.875533 | 2.859869e-68 | -8.615850e-47 |
| Msa0083460 | Msa0555020 | 0.802327 | 5.913427e-49 | -8.615850e-47 |
| Msa0083460 | Msa0648880 | 0.809264 | 2.062163e-50 | -8.615850e-47 |
| Msa0083460 | Msa0657610 | 0.801256 | 9.809876e-49 | -8.615850e-47 |
| Msa0083460 | Msa0669440 | 0.808035 | 3.773454e-50 | -8.615850e-47 |
| Msa0083460 | Msa0711790 | 0.800855 | 1.185065e-48 | -8.615850e-47 |
| Msa0083460 | Msa1372760 | 0.803399 | 3.552264e-49 | -8.615850e-47 |
| Msa0083460 | Msa1394540 | 0.812916 | 3.331747e-51 | -8.615850e-47 |
| Msa0083460 | Msa1441630 | 0.858360 | 8.689721e-63 | -8.615850e-47 |
| Msa0083460 | Msa1442690 | 0.918836 | 9.519930e-87 | -8.615850e-47 |
| Msa0083460 | Msa1451620 | -0.802164 | 6.387511e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083460 | MtrunA17_Chr1g0202341 | 91.374 | 313 | 25 | 2 | 109 | 420 | 375 | 686 | 0.0 | 582 |
| Msa0083460 | MtrunA17_Chr1g0202341 | 98.387 | 124 | 2 | 0 | 1 | 124 | 1 | 124 | 3.09e-81 | 263 |
| Msa0083460 | MtrunA17_Chr5g0448761 | 40.141 | 284 | 162 | 2 | 124 | 403 | 405 | 684 | 4.40e-66 | 225 |
| Msa0083460 | MtrunA17_Chr5g0448511 | 36.972 | 284 | 179 | 0 | 124 | 407 | 177 | 460 | 2.14e-63 | 213 |
| Msa0083460 | MtrunA17_Chr3g0118611 | 34.982 | 283 | 180 | 2 | 125 | 407 | 284 | 562 | 1.67e-50 | 182 |
| Msa0083460 | MtrunA17_Chr5g0440451 | 35.088 | 285 | 177 | 3 | 125 | 407 | 387 | 665 | 6.70e-50 | 181 |
| Msa0083460 | MtrunA17_Chr2g0287061 | 37.838 | 259 | 149 | 4 | 119 | 376 | 478 | 725 | 4.18e-44 | 164 |
| Msa0083460 | MtrunA17_Chr3g0080351 | 33.935 | 277 | 175 | 5 | 124 | 399 | 404 | 673 | 1.98e-43 | 162 |
| Msa0083460 | MtrunA17_Chr1g0207551 | 31.944 | 288 | 190 | 2 | 125 | 412 | 371 | 652 | 7.02e-43 | 160 |
| Msa0083460 | MtrunA17_Chr8g0363841 | 31.090 | 312 | 197 | 5 | 123 | 417 | 354 | 664 | 4.14e-40 | 151 |
| Msa0083460 | MtrunA17_Chr2g0329031 | 29.496 | 278 | 189 | 3 | 123 | 400 | 342 | 612 | 1.04e-38 | 148 |
| Msa0083460 | MtrunA17_Chr2g0291581 | 29.470 | 302 | 195 | 5 | 114 | 403 | 384 | 679 | 4.63e-37 | 143 |
| Msa0083460 | MtrunA17_Chr2g0296781 | 36.842 | 228 | 134 | 5 | 126 | 345 | 332 | 557 | 3.06e-36 | 140 |
| Msa0083460 | MtrunA17_Chr6g0477261 | 36.123 | 227 | 137 | 4 | 126 | 345 | 221 | 446 | 4.34e-36 | 140 |
| Msa0083460 | MtrunA17_Chr2g0324011 | 31.698 | 265 | 164 | 7 | 112 | 368 | 337 | 592 | 1.14e-35 | 138 |
| Msa0083460 | MtrunA17_Chr5g0441581 | 34.802 | 227 | 141 | 4 | 126 | 346 | 360 | 585 | 1.38e-35 | 139 |
| Msa0083460 | MtrunA17_Chr1g0203721 | 27.027 | 296 | 212 | 2 | 119 | 411 | 399 | 693 | 3.70e-32 | 129 |
| Msa0083460 | MtrunA17_Chr6g0458391 | 30.870 | 230 | 158 | 1 | 115 | 344 | 537 | 765 | 6.60e-32 | 128 |
| Msa0083460 | MtrunA17_Chr1g0198761 | 30.566 | 265 | 179 | 3 | 133 | 397 | 405 | 664 | 1.23e-31 | 127 |
| Msa0083460 | MtrunA17_Chr1g0196541 | 33.628 | 226 | 144 | 2 | 126 | 345 | 332 | 557 | 3.58e-31 | 126 |
| Msa0083460 | MtrunA17_Chr2g0287651 | 29.464 | 224 | 157 | 1 | 124 | 346 | 411 | 634 | 7.56e-30 | 122 |
| Msa0083460 | MtrunA17_Chr3g0077241 | 60.870 | 92 | 32 | 2 | 14 | 104 | 1 | 89 | 2.56e-28 | 108 |
| Msa0083460 | MtrunA17_Chr4g0052331 | 56.044 | 91 | 40 | 0 | 13 | 103 | 5 | 95 | 6.04e-28 | 106 |
| Msa0083460 | MtrunA17_Chr2g0290391 | 33.014 | 209 | 130 | 3 | 133 | 341 | 412 | 610 | 1.10e-27 | 115 |
| Msa0083460 | MtrunA17_Chr2g0294841 | 27.626 | 257 | 169 | 4 | 132 | 381 | 400 | 646 | 1.45e-27 | 115 |
| Msa0083460 | MtrunA17_Chr2g0276841 | 30.806 | 211 | 141 | 1 | 131 | 341 | 421 | 626 | 1.37e-26 | 112 |
| Msa0083460 | MtrunA17_Chr3g0082121 | 28.676 | 272 | 188 | 2 | 115 | 385 | 365 | 631 | 5.99e-26 | 110 |
| Msa0083460 | MtrunA17_Chr2g0308841 | 26.786 | 224 | 157 | 3 | 124 | 343 | 6 | 226 | 2.98e-24 | 101 |
| Msa0083460 | MtrunA17_Chr1g0203051 | 24.402 | 209 | 157 | 1 | 125 | 332 | 414 | 622 | 7.06e-21 | 95.1 |
| Msa0083460 | MtrunA17_Chr2g0291591 | 31.737 | 167 | 113 | 1 | 123 | 288 | 396 | 562 | 6.54e-20 | 92.0 |
| Msa0083460 | MtrunA17_Chr2g0329361 | 47.368 | 76 | 40 | 0 | 49 | 124 | 59 | 134 | 5.01e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083460 | AT4G38180.1 | 40.134 | 299 | 175 | 4 | 121 | 417 | 411 | 707 | 1.37e-64 | 221 |
| Msa0083460 | AT2G27110.3 | 34.507 | 284 | 177 | 4 | 125 | 406 | 217 | 493 | 8.55e-52 | 185 |
| Msa0083460 | AT2G27110.2 | 34.507 | 284 | 177 | 4 | 125 | 406 | 362 | 638 | 2.26e-51 | 185 |
| Msa0083460 | AT2G27110.1 | 34.507 | 284 | 177 | 4 | 125 | 406 | 362 | 638 | 2.26e-51 | 185 |
| Msa0083460 | AT4G38170.1 | 33.692 | 279 | 183 | 1 | 125 | 403 | 180 | 456 | 8.35e-51 | 179 |
| Msa0083460 | AT5G18960.2 | 41.629 | 221 | 126 | 1 | 124 | 344 | 511 | 728 | 1.24e-49 | 180 |
| Msa0083460 | AT5G18960.1 | 41.629 | 221 | 126 | 1 | 124 | 344 | 511 | 728 | 1.24e-49 | 180 |
| Msa0083460 | AT3G06250.2 | 40.271 | 221 | 129 | 1 | 124 | 344 | 487 | 704 | 2.51e-48 | 176 |
| Msa0083460 | AT3G06250.1 | 40.271 | 221 | 129 | 1 | 124 | 344 | 487 | 704 | 2.51e-48 | 176 |
| Msa0083460 | AT3G06250.3 | 40.271 | 221 | 129 | 1 | 124 | 344 | 487 | 704 | 2.51e-48 | 176 |
| Msa0083460 | AT3G22170.2 | 31.295 | 278 | 184 | 2 | 124 | 401 | 399 | 669 | 1.75e-47 | 174 |
| Msa0083460 | AT3G22170.1 | 31.295 | 278 | 184 | 2 | 124 | 401 | 399 | 669 | 1.75e-47 | 174 |
| Msa0083460 | AT4G15090.1 | 33.091 | 275 | 176 | 3 | 123 | 396 | 389 | 656 | 9.81e-47 | 172 |
| Msa0083460 | AT4G15090.5 | 33.091 | 275 | 176 | 3 | 123 | 396 | 389 | 656 | 9.81e-47 | 172 |
| Msa0083460 | AT4G15090.3 | 33.091 | 275 | 176 | 3 | 123 | 396 | 389 | 656 | 9.81e-47 | 172 |
| Msa0083460 | AT4G15090.2 | 33.091 | 275 | 176 | 3 | 123 | 396 | 389 | 656 | 9.81e-47 | 172 |
| Msa0083460 | AT4G15090.4 | 33.091 | 275 | 176 | 3 | 123 | 396 | 389 | 656 | 9.81e-47 | 172 |
| Msa0083460 | AT1G52520.1 | 29.866 | 298 | 189 | 6 | 123 | 407 | 409 | 699 | 1.74e-39 | 150 |
| Msa0083460 | AT1G76320.2 | 31.408 | 277 | 182 | 3 | 124 | 400 | 327 | 595 | 2.17e-37 | 144 |
| Msa0083460 | AT1G76320.3 | 31.408 | 277 | 182 | 3 | 124 | 400 | 327 | 595 | 2.25e-37 | 144 |
| Msa0083460 | AT1G76320.1 | 31.408 | 277 | 182 | 3 | 124 | 400 | 327 | 595 | 2.27e-37 | 144 |
| Msa0083460 | AT1G76320.4 | 31.408 | 277 | 182 | 3 | 124 | 400 | 327 | 595 | 2.27e-37 | 144 |
| Msa0083460 | AT4G19990.1 | 30.952 | 294 | 191 | 4 | 125 | 411 | 282 | 570 | 1.81e-35 | 139 |
| Msa0083460 | AT4G19990.5 | 31.058 | 293 | 190 | 4 | 126 | 411 | 340 | 627 | 1.92e-35 | 139 |
| Msa0083460 | AT4G19990.3 | 30.952 | 294 | 191 | 4 | 125 | 411 | 339 | 627 | 2.13e-35 | 139 |
| Msa0083460 | AT4G19990.4 | 30.952 | 294 | 191 | 4 | 125 | 411 | 339 | 627 | 2.13e-35 | 139 |
| Msa0083460 | AT4G19990.6 | 30.952 | 294 | 191 | 4 | 125 | 411 | 339 | 627 | 2.61e-35 | 139 |
| Msa0083460 | AT4G19990.2 | 30.952 | 294 | 191 | 4 | 125 | 411 | 339 | 627 | 2.61e-35 | 139 |
| Msa0083460 | AT4G19990.7 | 31.058 | 293 | 190 | 4 | 126 | 411 | 354 | 641 | 2.66e-35 | 139 |
| Msa0083460 | AT2G32250.2 | 32.444 | 225 | 149 | 2 | 125 | 347 | 335 | 558 | 1.85e-33 | 133 |
| Msa0083460 | AT2G32250.4 | 32.444 | 225 | 149 | 2 | 125 | 347 | 335 | 558 | 1.85e-33 | 133 |
| Msa0083460 | AT2G32250.6 | 32.444 | 225 | 149 | 2 | 125 | 347 | 335 | 558 | 2.14e-33 | 133 |
| Msa0083460 | AT2G32250.1 | 32.444 | 225 | 149 | 2 | 125 | 347 | 335 | 558 | 2.14e-33 | 133 |
| Msa0083460 | AT2G32250.3 | 32.444 | 225 | 149 | 2 | 125 | 347 | 335 | 558 | 2.14e-33 | 133 |
| Msa0083460 | AT2G32250.8 | 32.444 | 225 | 149 | 2 | 125 | 347 | 294 | 517 | 2.14e-33 | 133 |
| Msa0083460 | AT2G32250.7 | 32.444 | 225 | 149 | 2 | 125 | 347 | 294 | 517 | 2.27e-33 | 133 |
| Msa0083460 | AT2G32250.5 | 32.444 | 225 | 149 | 2 | 125 | 347 | 335 | 558 | 2.45e-33 | 133 |
| Msa0083460 | AT1G80010.1 | 26.861 | 309 | 213 | 5 | 106 | 406 | 417 | 720 | 9.85e-33 | 131 |
| Msa0083460 | AT5G28530.1 | 25.468 | 267 | 193 | 2 | 132 | 398 | 415 | 675 | 4.43e-27 | 114 |
| Msa0083460 | AT5G28530.4 | 25.843 | 267 | 192 | 3 | 132 | 398 | 352 | 612 | 4.80e-27 | 114 |
| Msa0083460 | AT5G28530.5 | 25.094 | 267 | 190 | 3 | 132 | 398 | 352 | 608 | 5.34e-26 | 110 |
| Msa0083460 | AT5G28530.3 | 24.719 | 267 | 191 | 2 | 132 | 398 | 415 | 671 | 6.27e-26 | 110 |
| Msa0083460 | AT5G28530.2 | 24.719 | 267 | 191 | 2 | 132 | 398 | 415 | 671 | 6.27e-26 | 110 |
| Msa0083460 | AT1G10240.2 | 29.858 | 211 | 143 | 1 | 131 | 341 | 399 | 604 | 2.30e-25 | 109 |
| Msa0083460 | AT1G10240.1 | 29.858 | 211 | 143 | 1 | 131 | 341 | 399 | 604 | 2.30e-25 | 109 |
Find 59 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTTTAATAGTATTA+TGG | 0.227693 | 1_2:+62549050 | Msa0083460:CDS |
| CATTCCTTCAATGGGCTCTA+AGG | 0.236305 | 1_2:-62547304 | None:intergenic |
| TGAAAAGTCACATGATATTT+AGG | 0.266210 | 1_2:-62548817 | None:intergenic |
| AACTGTGTTCCTAAAGAAAA+AGG | 0.312218 | 1_2:+62548912 | Msa0083460:CDS |
| AATCGTTTGGTATTCTTTGT+AGG | 0.315386 | 1_2:+62548881 | Msa0083460:CDS |
| TATACTCAATTCGATCAAAA+TGG | 0.317025 | 1_2:+62548425 | Msa0083460:CDS |
| ATTCTTCAATTGTGATAGAT+TGG | 0.351090 | 1_2:-62548336 | None:intergenic |
| TGTCAAAAGTTTGAATCGTT+TGG | 0.358658 | 1_2:+62548868 | Msa0083460:CDS |
| TTTAAACTCCATTCCTTCAA+TGG | 0.364249 | 1_2:-62547313 | None:intergenic |
| AGAACAAACGGTATGATAAT+TGG | 0.370543 | 1_2:+62547420 | Msa0083460:CDS |
| ATTCCTTCAATGGGCTCTAA+GGG | 0.384475 | 1_2:-62547303 | None:intergenic |
| TTGAAGAATTTGAGTCTGAA+TGG | 0.400537 | 1_2:+62548350 | Msa0083460:CDS |
| TTAAACTCCATTCCTTCAAT+GGG | 0.435121 | 1_2:-62547312 | None:intergenic |
| TTGACAATTGAAGAATTTGA+AGG | 0.456352 | 1_2:+62549006 | Msa0083460:CDS |
| TGAAGAATTTGAGTCTGAAT+GGG | 0.463681 | 1_2:+62548351 | Msa0083460:CDS |
| TCCTTCAATGGGCTCTAAGG+GGG | 0.466966 | 1_2:-62547301 | None:intergenic |
| CTGGAATGTCTACCACTCAT+AGG | 0.472850 | 1_2:+62548479 | Msa0083460:CDS |
| TTTGGCTCGAAACCCCTCCT+TGG | 0.475441 | 1_2:-62547460 | None:intergenic |
| TTTGAAGCTTCTTCTTCCAT+GGG | 0.477189 | 1_2:-62548664 | None:intergenic |
| GAAGCAATGATTGATAAATA+CGG | 0.502447 | 1_2:+62548373 | Msa0083460:CDS |
| AAATTATGATGTACATATGC+AGG | 0.504291 | 1_2:-62548451 | None:intergenic |
| GGGTATAAAGTTCGCAAAAG+TGG | 0.509142 | 1_2:-62548643 | None:intergenic |
| TCAAGAAATTCTTTGTTCCA+AGG | 0.511520 | 1_2:+62547443 | Msa0083460:CDS |
| CCTTCAATGGGCTCTAAGGG+GGG | 0.511902 | 1_2:-62547300 | None:intergenic |
| AAGCAATGATTGATAAATAC+GGG | 0.513517 | 1_2:+62548374 | Msa0083460:CDS |
| CACAGTATGTTCTACAACGA+TGG | 0.518628 | 1_2:+62548950 | Msa0083460:CDS |
| TGTGTCAGAAACTTGCTCAA+TGG | 0.523310 | 1_2:-62548550 | None:intergenic |
| CTTAGAGCCCATTGAAGGAA+TGG | 0.526994 | 1_2:+62547305 | Msa0083460:CDS |
| ACAATTGAAGAATTTGAAGG+AGG | 0.530417 | 1_2:+62549009 | Msa0083460:CDS |
| TGAGATATTTCAAGATGAGT+TGG | 0.531340 | 1_2:+62548708 | Msa0083460:CDS |
| GTTACTAAGTCAAGAACAAA+CGG | 0.531428 | 1_2:+62547408 | Msa0083460:CDS |
| AAATTCTTTGTTCCAAGGAG+GGG | 0.533751 | 1_2:+62547448 | Msa0083460:CDS |
| AGGTCATGAGATGACAGATA+TGG | 0.541561 | 1_2:+62547191 | Msa0083460:intron |
| GATGGTGGTTCACTATTGAG+AGG | 0.542446 | 1_2:-62547273 | None:intergenic |
| ATATTTCAAGATGAGTTGGT+TGG | 0.542621 | 1_2:+62548712 | Msa0083460:CDS |
| GAAATTCTTTGTTCCAAGGA+GGG | 0.547884 | 1_2:+62547447 | Msa0083460:CDS |
| TGCACGTTACAACGAGGAAA+GGG | 0.548977 | 1_2:+62548591 | Msa0083460:CDS |
| CGAGAAAATGAAAGACGATT+CGG | 0.551598 | 1_2:+62545723 | Msa0083460:exon |
| TTCCTTCAATGGGCTCTAAG+GGG | 0.577393 | 1_2:-62547302 | None:intergenic |
| TTTGCGAACTTTATACCCCA+TGG | 0.583317 | 1_2:+62548648 | Msa0083460:CDS |
| ATGCACGTTACAACGAGGAA+AGG | 0.585794 | 1_2:+62548590 | Msa0083460:CDS |
| CGTTGTAGAACATACTGTGA+AGG | 0.588365 | 1_2:-62548946 | None:intergenic |
| CATGAGATGACAGATATGGA+TGG | 0.601625 | 1_2:+62547195 | Msa0083460:CDS |
| AGAAATTCTTTGTTCCAAGG+AGG | 0.606491 | 1_2:+62547446 | Msa0083460:CDS |
| TTGAAGCTTCTTCTTCCATG+GGG | 0.606500 | 1_2:-62548663 | None:intergenic |
| GTTGTAGAACATACTGTGAA+GGG | 0.621697 | 1_2:-62548945 | None:intergenic |
| CTGTGTCAAGTTCAAACTGA+TGG | 0.625902 | 1_2:+62545650 | Msa0083460:five_prime_UTR |
| AGAGCTTGAAGAATCAAATG+AGG | 0.626048 | 1_2:+62549173 | Msa0083460:CDS |
| GTTTGAACTTGACACAGTGA+TGG | 0.626188 | 1_2:-62545644 | None:intergenic |
| TTATTACACATGATGAAACC+AGG | 0.637175 | 1_2:+62547511 | Msa0083460:CDS |
| CATACTTTCACTCCTATGAG+TGG | 0.639566 | 1_2:-62548491 | None:intergenic |
| ACAAGGTACGCTCAGAACAA+AGG | 0.639870 | 1_2:+62547363 | Msa0083460:CDS |
| ACGGGTTGCAAGATAATCAG+TGG | 0.648204 | 1_2:+62548392 | Msa0083460:CDS |
| AAGCAAAGAGTTACTACACA+AGG | 0.651539 | 1_2:+62547346 | Msa0083460:CDS |
| ACTTAGTAACACGGCCCATG+CGG | 0.656322 | 1_2:-62547395 | None:intergenic |
| TTGTTCTTGACTTAGTAACA+CGG | 0.665948 | 1_2:-62547404 | None:intergenic |
| TATTACACATGATGAAACCA+GGG | 0.694710 | 1_2:+62547512 | Msa0083460:CDS |
| TGTATCATTTGAGACAACCA+TGG | 0.701765 | 1_2:-62547226 | None:intergenic |
| TCTTGATGCACGTTACAACG+AGG | 0.755842 | 1_2:+62548585 | Msa0083460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGAAAAATAATGATATA+TGG | + | chr1_2:62547559-62547578 | Msa0083460:intron | 10.0% |
| !!! | AAAAAAAAAACTTTTTCACT+TGG | + | chr1_2:62546482-62546501 | Msa0083460:intron | 15.0% |
| !! | AATCATAACCATTATATTTA+GGG | - | chr1_2:62546721-62546740 | None:intergenic | 15.0% |
| !! | AAATCATAACCATTATATTT+AGG | - | chr1_2:62546722-62546741 | None:intergenic | 15.0% |
| !! | ATATAATGGTTATGATTTAT+TGG | + | chr1_2:62546724-62546743 | Msa0083460:intron | 15.0% |
| !! | TATAATGGTTATGATTTATT+GGG | + | chr1_2:62546725-62546744 | Msa0083460:intron | 15.0% |
| !!! | AAAATTAACTAATTGCTTTT+GGG | + | chr1_2:62547917-62547936 | Msa0083460:intron | 15.0% |
| !!! | TATTTATTTTTCAAGTATGT+TGG | - | chr1_2:62547999-62548018 | None:intergenic | 15.0% |
| !!! | AAGTATGAATAAGTTTTTTA+AGG | + | chr1_2:62548507-62548526 | Msa0083460:CDS | 15.0% |
| !! | TTCATTGTTTAATAGTATTA+TGG | + | chr1_2:62549050-62549069 | Msa0083460:CDS | 15.0% |
| !! | AGAAACTTGAAAAAAAAAAG+GGG | - | chr1_2:62545799-62545818 | None:intergenic | 20.0% |
| !! | CAGAAACTTGAAAAAAAAAA+GGG | - | chr1_2:62545800-62545819 | None:intergenic | 20.0% |
| !! | TTGTTGAATATTGTTCTTAT+CGG | + | chr1_2:62545876-62545895 | Msa0083460:intron | 20.0% |
| !! | TATTCAAATAATAATAGCCA+TGG | + | chr1_2:62545937-62545956 | Msa0083460:intron | 20.0% |
| !!! | ATGTATTTTCGATGAATTAT+TGG | + | chr1_2:62546104-62546123 | Msa0083460:intron | 20.0% |
| !!! | TGTATTTTCGATGAATTATT+GGG | + | chr1_2:62546105-62546124 | Msa0083460:intron | 20.0% |
| !!! | ATTATTGGGATTTAATTTTG+TGG | + | chr1_2:62546119-62546138 | Msa0083460:intron | 20.0% |
| !!! | TTATTGGGATTTAATTTTGT+GGG | + | chr1_2:62546120-62546139 | Msa0083460:intron | 20.0% |
| !! | ATCATAACCATTATATTTAG+GGG | - | chr1_2:62546720-62546739 | None:intergenic | 20.0% |
| !! | CTAATTATTATTTGTTCTCT+AGG | + | chr1_2:62546768-62546787 | Msa0083460:intron | 20.0% |
| !! | AATAAAACACACCAAATTTA+CGG | - | chr1_2:62546840-62546859 | None:intergenic | 20.0% |
| !! | TGTAACTAATAACGATAAAA+TGG | - | chr1_2:62546928-62546947 | None:intergenic | 20.0% |
| !!! | GAAAATTAACTAATTGCTTT+TGG | + | chr1_2:62547916-62547935 | Msa0083460:intron | 20.0% |
| !!! | ATTTTTCTTTCTTAGCATTT+CGG | - | chr1_2:62548978-62548997 | None:intergenic | 20.0% |
| ! | CCAGAAACTTGAAAAAAAAA+AGG | - | chr1_2:62545801-62545820 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTTCAAGTTTC+TGG | + | chr1_2:62545798-62545817 | Msa0083460:intron | 25.0% |
| !! | GTTTTCTTATCTCATACATT+TGG | + | chr1_2:62546620-62546639 | Msa0083460:intron | 25.0% |
| !!! | ATTTGGTTTGTGTTTTTCTT+TGG | + | chr1_2:62546637-62546656 | Msa0083460:intron | 25.0% |
| !! | TTGTTTTCCCCTAAATATAA+TGG | + | chr1_2:62546710-62546729 | Msa0083460:intron | 25.0% |
| ! | ATAAAACACACCAAATTTAC+GGG | - | chr1_2:62546839-62546858 | None:intergenic | 25.0% |
| ! | AATAACGATAAAATGGTTTC+AGG | - | chr1_2:62546921-62546940 | None:intergenic | 25.0% |
| !! | ACATGATGAACTTTTCTTTA+TGG | + | chr1_2:62546954-62546973 | Msa0083460:intron | 25.0% |
| ! | AAATCAATCTGAATAAGTAG+TGG | + | chr1_2:62547040-62547059 | Msa0083460:intron | 25.0% |
| ! | TAAACATGCTATTAGAAAAG+AGG | - | chr1_2:62547140-62547159 | None:intergenic | 25.0% |
| !! | AGTAATTGATAACATCTTGT+TGG | - | chr1_2:62547776-62547795 | None:intergenic | 25.0% |
| !! | GCAATTAGTTAATTTTCCTT+CGG | - | chr1_2:62547913-62547932 | None:intergenic | 25.0% |
| !! | AGAGTTGCTTACAAATATTT+TGG | + | chr1_2:62547954-62547973 | Msa0083460:intron | 25.0% |
| !!! | TTACAAATATTTTGGTGATG+TGG | + | chr1_2:62547962-62547981 | Msa0083460:intron | 25.0% |
| !! | TCATCAACAATCAATTCTTT+TGG | + | chr1_2:62548055-62548074 | Msa0083460:intron | 25.0% |
| ! | ATTCTTCAATTGTGATAGAT+TGG | - | chr1_2:62548339-62548358 | None:intergenic | 25.0% |
| ! | GAAGCAATGATTGATAAATA+CGG | + | chr1_2:62548373-62548392 | Msa0083460:CDS | 25.0% |
| ! | AAGCAATGATTGATAAATAC+GGG | + | chr1_2:62548374-62548393 | Msa0083460:CDS | 25.0% |
| ! | TATACTCAATTCGATCAAAA+TGG | + | chr1_2:62548425-62548444 | Msa0083460:CDS | 25.0% |
| ! | AAATTATGATGTACATATGC+AGG | - | chr1_2:62548454-62548473 | None:intergenic | 25.0% |
| ! | GAAGCTTCAAAAATTTATAC+AGG | + | chr1_2:62548676-62548695 | Msa0083460:CDS | 25.0% |
| !!! | AGAAAATTCAACTTTTTCTG+TGG | - | chr1_2:62548752-62548771 | None:intergenic | 25.0% |
| ! | TGAAAAGTCACATGATATTT+AGG | - | chr1_2:62548820-62548839 | None:intergenic | 25.0% |
| !! | TTTTTCTTTCTTAGCATTTC+GGG | - | chr1_2:62548977-62548996 | None:intergenic | 25.0% |
| ! | GCTAAGAAAGAAAAATTTGA+AGG | + | chr1_2:62548982-62549001 | Msa0083460:CDS | 25.0% |
| ! | TTGACAATTGAAGAATTTGA+AGG | + | chr1_2:62549006-62549025 | Msa0083460:CDS | 25.0% |
| ! | GGAGAAATTTGAAACTTACA+AGG | - | chr1_2:62545760-62545779 | None:intergenic | 30.0% |
| AAATAGTGAACACATTTCCA+TGG | - | chr1_2:62545957-62545976 | None:intergenic | 30.0% | |
| ATTAATGAACAGAAGATCGT+TGG | - | chr1_2:62546218-62546237 | None:intergenic | 30.0% | |
| TATGGCAACAACAACATAAA+TGG | + | chr1_2:62546342-62546361 | Msa0083460:intron | 30.0% | |
| !!! | TTGTCTCAAGTTTTGTTATC+AGG | + | chr1_2:62546538-62546557 | Msa0083460:intron | 30.0% |
| !!! | TGTCTCAAGTTTTGTTATCA+GGG | + | chr1_2:62546539-62546558 | Msa0083460:intron | 30.0% |
| !! | GTTTTTCTTTGGAGATAATC+TGG | + | chr1_2:62546648-62546667 | Msa0083460:intron | 30.0% |
| ACTTCAGAACAAATACAGTA+TGG | + | chr1_2:62546991-62547010 | Msa0083460:intron | 30.0% | |
| CTTCAGAACAAATACAGTAT+GGG | + | chr1_2:62546992-62547011 | Msa0083460:intron | 30.0% | |
| CAATACTGTTTGCGTTATTA+TGG | + | chr1_2:62547167-62547186 | Msa0083460:intron | 30.0% | |
| TTAAACTCCATTCCTTCAAT+GGG | - | chr1_2:62547315-62547334 | None:intergenic | 30.0% | |
| TTTAAACTCCATTCCTTCAA+TGG | - | chr1_2:62547316-62547335 | None:intergenic | 30.0% | |
| TTGTTCTTGACTTAGTAACA+CGG | - | chr1_2:62547407-62547426 | None:intergenic | 30.0% | |
| GTTACTAAGTCAAGAACAAA+CGG | + | chr1_2:62547408-62547427 | Msa0083460:CDS | 30.0% | |
| AGAACAAACGGTATGATAAT+TGG | + | chr1_2:62547420-62547439 | Msa0083460:CDS | 30.0% | |
| TCAAGAAATTCTTTGTTCCA+AGG | + | chr1_2:62547443-62547462 | Msa0083460:CDS | 30.0% | |
| !! | TCCTTGTTTCACATACTTTT+TGG | - | chr1_2:62547481-62547500 | None:intergenic | 30.0% |
| TTATTACACATGATGAAACC+AGG | + | chr1_2:62547511-62547530 | Msa0083460:CDS | 30.0% | |
| TATTACACATGATGAAACCA+GGG | + | chr1_2:62547512-62547531 | Msa0083460:CDS | 30.0% | |
| AATTGTCAGTTGAAGAATAC+TGG | + | chr1_2:62547861-62547880 | Msa0083460:intron | 30.0% | |
| ATTGTCAGTTGAAGAATACT+GGG | + | chr1_2:62547862-62547881 | Msa0083460:intron | 30.0% | |
| ! | GTTTTTCTATGCGTTTCAAA+TGG | + | chr1_2:62547884-62547903 | Msa0083460:intron | 30.0% |
| TGATGATTAACTCCAGTAAT+TGG | - | chr1_2:62548038-62548057 | None:intergenic | 30.0% | |
| !!! | AAACTGTAGAGAGTTTTGTT+TGG | + | chr1_2:62548098-62548117 | Msa0083460:intron | 30.0% |
| !! | GGTCTGTGATAATAGTTTTA+GGG | - | chr1_2:62548162-62548181 | None:intergenic | 30.0% |
| ! | TGGTCTGTGATAATAGTTTT+AGG | - | chr1_2:62548163-62548182 | None:intergenic | 30.0% |
| CAATAATGGTGATTAACCTT+TGG | - | chr1_2:62548223-62548242 | None:intergenic | 30.0% | |
| TTAATCACCATTATTGCATG+TGG | + | chr1_2:62548227-62548246 | Msa0083460:intron | 30.0% | |
| TTGAAGAATTTGAGTCTGAA+TGG | + | chr1_2:62548350-62548369 | Msa0083460:CDS | 30.0% | |
| TGAAGAATTTGAGTCTGAAT+GGG | + | chr1_2:62548351-62548370 | Msa0083460:CDS | 30.0% | |
| ! | GTACATCATAATTTTTGTGC+TGG | + | chr1_2:62548460-62548479 | Msa0083460:CDS | 30.0% |
| TGAGATATTTCAAGATGAGT+TGG | + | chr1_2:62548708-62548727 | Msa0083460:CDS | 30.0% | |
| !! | ATATTTCAAGATGAGTTGGT+TGG | + | chr1_2:62548712-62548731 | Msa0083460:CDS | 30.0% |
| ! | AGTTGAATTTTCTGATGAAG+TGG | + | chr1_2:62548759-62548778 | Msa0083460:CDS | 30.0% |
| TGTCAAAAGTTTGAATCGTT+TGG | + | chr1_2:62548868-62548887 | Msa0083460:CDS | 30.0% | |
| AATCGTTTGGTATTCTTTGT+AGG | + | chr1_2:62548881-62548900 | Msa0083460:CDS | 30.0% | |
| AACTGTGTTCCTAAAGAAAA+AGG | + | chr1_2:62548912-62548931 | Msa0083460:CDS | 30.0% | |
| ! | GATAACGTACCTTTTTCTTT+AGG | - | chr1_2:62548924-62548943 | None:intergenic | 30.0% |
| ACAATTGAAGAATTTGAAGG+AGG | + | chr1_2:62549009-62549028 | Msa0083460:CDS | 30.0% | |
| !! | AATTTTCTGAAAGAGCTTCA+TGG | + | chr1_2:62549085-62549104 | Msa0083460:CDS | 30.0% |
| !! | TGATGGTTGTTTCGTTTTCT+AGG | + | chr1_2:62545667-62545686 | Msa0083460:five_prime_UTR | 35.0% |
| !! | GATGGTTGTTTCGTTTTCTA+GGG | + | chr1_2:62545668-62545687 | Msa0083460:five_prime_UTR | 35.0% |
| ! | ATCGTCTTTCATTTTCTCGT+CGG | - | chr1_2:62545722-62545741 | None:intergenic | 35.0% |
| CGAGAAAATGAAAGACGATT+CGG | + | chr1_2:62545723-62545742 | Msa0083460:exon | 35.0% | |
| TCTACTGCAAAACCTTTAAG+GGG | - | chr1_2:62545830-62545849 | None:intergenic | 35.0% | |
| GTCTACTGCAAAACCTTTAA+GGG | - | chr1_2:62545831-62545850 | None:intergenic | 35.0% | |
| TGTCTACTGCAAAACCTTTA+AGG | - | chr1_2:62545832-62545851 | None:intergenic | 35.0% | |
| !! | TCTTTTGATGCTTGTTGCTA+TGG | + | chr1_2:62546324-62546343 | Msa0083460:intron | 35.0% |
| CAACGATATACTGGTAGTTA+TGG | + | chr1_2:62546371-62546390 | Msa0083460:intron | 35.0% | |
| ! | ATAATGTGGCTCATGTTTTG+TGG | + | chr1_2:62546439-62546458 | Msa0083460:intron | 35.0% |
| ! | TAATGTGGCTCATGTTTTGT+GGG | + | chr1_2:62546440-62546459 | Msa0083460:intron | 35.0% |
| !! | CTCATGTTTTGTGGGTTATT+GGG | + | chr1_2:62546448-62546467 | Msa0083460:intron | 35.0% |
| ! | TTTTCGTCATCCCGTAAATT+TGG | + | chr1_2:62546826-62546845 | Msa0083460:intron | 35.0% |
| CTCTGATAAAGCCAGAAAAA+TGG | - | chr1_2:62547114-62547133 | None:intergenic | 35.0% | |
| ! | TATGGATGGAGATTTTACCA+TGG | + | chr1_2:62547209-62547228 | Msa0083460:CDS | 35.0% |
| ! | TGTATCATTTGAGACAACCA+TGG | - | chr1_2:62547229-62547248 | None:intergenic | 35.0% |
| AAGCAAAGAGTTACTACACA+AGG | + | chr1_2:62547346-62547365 | Msa0083460:CDS | 35.0% | |
| !!! | AAAGGTTTTAGTTTCCGCAT+GGG | + | chr1_2:62547381-62547400 | Msa0083460:CDS | 35.0% |
| AGAAATTCTTTGTTCCAAGG+AGG | + | chr1_2:62547446-62547465 | Msa0083460:CDS | 35.0% | |
| GAAATTCTTTGTTCCAAGGA+GGG | + | chr1_2:62547447-62547466 | Msa0083460:CDS | 35.0% | |
| AAATTCTTTGTTCCAAGGAG+GGG | + | chr1_2:62547448-62547467 | Msa0083460:CDS | 35.0% | |
| ! | GCCAAAAAGTATGTGAAACA+AGG | + | chr1_2:62547477-62547496 | Msa0083460:CDS | 35.0% |
| !!! | AGTGGCGGTATTGATAATTT+TGG | + | chr1_2:62547744-62547763 | Msa0083460:intron | 35.0% |
| !!! | ATTGCTTTTGGGTTGATTCA+AGG | + | chr1_2:62547928-62547947 | Msa0083460:intron | 35.0% |
| ! | ACTCCTTTTGTTCCAATTAC+TGG | + | chr1_2:62548023-62548042 | Msa0083460:intron | 35.0% |
| ACTCCAGTAATTGGAACAAA+AGG | - | chr1_2:62548029-62548048 | None:intergenic | 35.0% | |
| TTGTTTGGTTGCTAAGTACT+TGG | + | chr1_2:62548113-62548132 | Msa0083460:intron | 35.0% | |
| ACTTGGTTAGAAGCAATGAA+TGG | + | chr1_2:62548130-62548149 | Msa0083460:intron | 35.0% | |
| CTTGGTTAGAAGCAATGAAT+GGG | + | chr1_2:62548131-62548150 | Msa0083460:intron | 35.0% | |
| TTGGTTAGAAGCAATGAATG+GGG | + | chr1_2:62548132-62548151 | Msa0083460:intron | 35.0% | |
| CAATATGCCACATGCAATAA+TGG | - | chr1_2:62548237-62548256 | None:intergenic | 35.0% | |
| TTATTGCATGTGGCATATTG+AGG | + | chr1_2:62548237-62548256 | Msa0083460:intron | 35.0% | |
| CACATGAATCAGATCTATCA+TGG | + | chr1_2:62548274-62548293 | Msa0083460:intron | 35.0% | |
| ! | TTTGAAGCTTCTTCTTCCAT+GGG | - | chr1_2:62548667-62548686 | None:intergenic | 35.0% |
| !!! | TTTTGAAGCTTCTTCTTCCA+TGG | - | chr1_2:62548668-62548687 | None:intergenic | 35.0% |
| GTTGTAGAACATACTGTGAA+GGG | - | chr1_2:62548948-62548967 | None:intergenic | 35.0% | |
| AGAGCTTGAAGAATCAAATG+AGG | + | chr1_2:62549173-62549192 | Msa0083460:CDS | 35.0% | |
| GTTTGAACTTGACACAGTGA+TGG | - | chr1_2:62545647-62545666 | None:intergenic | 40.0% | |
| CTGTGTCAAGTTCAAACTGA+TGG | + | chr1_2:62545650-62545669 | Msa0083460:five_prime_UTR | 40.0% | |
| !! | CTTTCATTTTCTCGTCGGTT+CGG | - | chr1_2:62545717-62545736 | None:intergenic | 40.0% |
| AGGGGTAGAATGAAGAAAAG+AGG | - | chr1_2:62545781-62545800 | None:intergenic | 40.0% | |
| ! | TTCTGGTTGTTTCCCCTTAA+AGG | + | chr1_2:62545815-62545834 | Msa0083460:intron | 40.0% |
| GAAGTAGAACAGAGCAACAT+AGG | + | chr1_2:62546002-62546021 | Msa0083460:intron | 40.0% | |
| GAGTTGTTTAAGCAGTTCTC+TGG | - | chr1_2:62546084-62546103 | None:intergenic | 40.0% | |
| CCTTGACACGACAGAAATTA+AGG | - | chr1_2:62546180-62546199 | None:intergenic | 40.0% | |
| CCTTAATTTCTGTCGTGTCA+AGG | + | chr1_2:62546177-62546196 | Msa0083460:intron | 40.0% | |
| ACAAATAGCGACAGTTGTTG+TGG | + | chr1_2:62546255-62546274 | Msa0083460:intron | 40.0% | |
| CAAATAGCGACAGTTGTTGT+GGG | + | chr1_2:62546256-62546275 | Msa0083460:intron | 40.0% | |
| AGTTATGGAGATGTTGCAGT+AGG | + | chr1_2:62546386-62546405 | Msa0083460:intron | 40.0% | |
| GTTATGGAGATGTTGCAGTA+GGG | + | chr1_2:62546387-62546406 | Msa0083460:intron | 40.0% | |
| !! | GCTCATGTTTTGTGGGTTAT+TGG | + | chr1_2:62546447-62546466 | Msa0083460:intron | 40.0% |
| TCAAACTCTCAGACTGCTAA+GGG | - | chr1_2:62546586-62546605 | None:intergenic | 40.0% | |
| ATCAAACTCTCAGACTGCTA+AGG | - | chr1_2:62546587-62546606 | None:intergenic | 40.0% | |
| AGCAGTCTGAGAGTTTGATA+TGG | + | chr1_2:62546588-62546607 | Msa0083460:intron | 40.0% | |
| AGATAATCTGGTCAAAGTCG+TGG | + | chr1_2:62546660-62546679 | Msa0083460:intron | 40.0% | |
| CAGAAAAATGGAGATTGCAC+TGG | - | chr1_2:62547102-62547121 | None:intergenic | 40.0% | |
| !! | CAGTGCAATCTCCATTTTTC+TGG | + | chr1_2:62547100-62547119 | Msa0083460:intron | 40.0% |
| ACTGTTTGCGTTATTATGGC+AGG | + | chr1_2:62547171-62547190 | Msa0083460:intron | 40.0% | |
| AGGTCATGAGATGACAGATA+TGG | + | chr1_2:62547191-62547210 | Msa0083460:intron | 40.0% | |
| CATGAGATGACAGATATGGA+TGG | + | chr1_2:62547195-62547214 | Msa0083460:CDS | 40.0% | |
| ! | ATTCCTTCAATGGGCTCTAA+GGG | - | chr1_2:62547306-62547325 | None:intergenic | 40.0% |
| !!! | CAAAGGTTTTAGTTTCCGCA+TGG | + | chr1_2:62547380-62547399 | Msa0083460:CDS | 40.0% |
| GAGAAAACAGCTGGTGATTA+TGG | - | chr1_2:62547608-62547627 | None:intergenic | 40.0% | |
| ACTGATGTGCTTGATGAATC+TGG | + | chr1_2:62547687-62547706 | Msa0083460:intron | 40.0% | |
| ! | GTGCTTGATGAATCTGGTTT+AGG | + | chr1_2:62547693-62547712 | Msa0083460:intron | 40.0% |
| TCTGTCTTATGCACTGAAAG+TGG | + | chr1_2:62547726-62547745 | Msa0083460:intron | 40.0% | |
| !! | TTTTGGTTGTGCTCTCTTGT+GGG | + | chr1_2:62548072-62548091 | Msa0083460:intron | 40.0% |
| TATCACCAATGCAGTTGCAA+GGG | + | chr1_2:62548192-62548211 | Msa0083460:intron | 40.0% | |
| TAGATCTGATTCATGTGCTC+TGG | - | chr1_2:62548271-62548290 | None:intergenic | 40.0% | |
| CATACTTTCACTCCTATGAG+TGG | - | chr1_2:62548494-62548513 | None:intergenic | 40.0% | |
| ! | TGTGTCAGAAACTTGCTCAA+TGG | - | chr1_2:62548553-62548572 | None:intergenic | 40.0% |
| GGGTATAAAGTTCGCAAAAG+TGG | - | chr1_2:62548646-62548665 | None:intergenic | 40.0% | |
| TTTGCGAACTTTATACCCCA+TGG | + | chr1_2:62548648-62548667 | Msa0083460:CDS | 40.0% | |
| TTGAAGCTTCTTCTTCCATG+GGG | - | chr1_2:62548666-62548685 | None:intergenic | 40.0% | |
| CGTTGTAGAACATACTGTGA+AGG | - | chr1_2:62548949-62548968 | None:intergenic | 40.0% | |
| CACAGTATGTTCTACAACGA+TGG | + | chr1_2:62548950-62548969 | Msa0083460:CDS | 40.0% | |
| CAGAGCAACATAGGCACAAA+TGG | + | chr1_2:62546011-62546030 | Msa0083460:intron | 45.0% | |
| CAATGACACACCAGTAATGC+AGG | + | chr1_2:62546049-62546068 | Msa0083460:intron | 45.0% | |
| GTGTACAATGCCTGCATTAC+TGG | - | chr1_2:62546062-62546081 | None:intergenic | 45.0% | |
| TTGTTGTGGGCATGATCATG+AGG | + | chr1_2:62546269-62546288 | Msa0083460:intron | 45.0% | |
| TGGCTGTAGCAACGATATAC+TGG | + | chr1_2:62546362-62546381 | Msa0083460:intron | 45.0% | |
| AGTAGGGATTCTCGTTGTTG+AGG | + | chr1_2:62546403-62546422 | Msa0083460:intron | 45.0% | |
| GATCCGCTTGCAGAATAATG+TGG | + | chr1_2:62546425-62546444 | Msa0083460:intron | 45.0% | |
| GAGCCACATTATTCTGCAAG+CGG | - | chr1_2:62546431-62546450 | None:intergenic | 45.0% | |
| ACACCTCCTTAGCTTACAAG+CGG | - | chr1_2:62546687-62546706 | None:intergenic | 45.0% | |
| ! | GATGGTGGTTCACTATTGAG+AGG | - | chr1_2:62547276-62547295 | None:intergenic | 45.0% |
| !! | TTCCTTCAATGGGCTCTAAG+GGG | - | chr1_2:62547305-62547324 | None:intergenic | 45.0% |
| ! | CATTCCTTCAATGGGCTCTA+AGG | - | chr1_2:62547307-62547326 | None:intergenic | 45.0% |
| CTTAGAGCCCATTGAAGGAA+TGG | + | chr1_2:62547305-62547324 | Msa0083460:CDS | 45.0% | |
| ACAAGGTACGCTCAGAACAA+AGG | + | chr1_2:62547363-62547382 | Msa0083460:CDS | 45.0% | |
| TACACATGATGAAACCAGGG+TGG | + | chr1_2:62547515-62547534 | Msa0083460:intron | 45.0% | |
| ACACATGATGAAACCAGGGT+GGG | + | chr1_2:62547516-62547535 | Msa0083460:intron | 45.0% | |
| ! | CACTTCTAGGAGAAAACAGC+TGG | - | chr1_2:62547617-62547636 | None:intergenic | 45.0% |
| GTCTTATGCACTGAAAGTGG+CGG | + | chr1_2:62547729-62547748 | Msa0083460:intron | 45.0% | |
| !! | CTTTTGGTTGTGCTCTCTTG+TGG | + | chr1_2:62548071-62548090 | Msa0083460:intron | 45.0% |
| ! | CATTGGTGATAGCAGTGTGT+TGG | - | chr1_2:62548183-62548202 | None:intergenic | 45.0% |
| CTATCACCAATGCAGTTGCA+AGG | + | chr1_2:62548191-62548210 | Msa0083460:intron | 45.0% | |
| AAACACCCTTGCAACTGCAT+TGG | - | chr1_2:62548200-62548219 | None:intergenic | 45.0% | |
| !! | AGTTGCAAGGGTGTTTCCAA+AGG | + | chr1_2:62548204-62548223 | Msa0083460:intron | 45.0% |
| ! | ACGGGTTGCAAGATAATCAG+TGG | + | chr1_2:62548392-62548411 | Msa0083460:CDS | 45.0% |
| CTGGAATGTCTACCACTCAT+AGG | + | chr1_2:62548479-62548498 | Msa0083460:CDS | 45.0% | |
| TCTTGATGCACGTTACAACG+AGG | + | chr1_2:62548585-62548604 | Msa0083460:CDS | 45.0% | |
| ATGCACGTTACAACGAGGAA+AGG | + | chr1_2:62548590-62548609 | Msa0083460:CDS | 45.0% | |
| TGCACGTTACAACGAGGAAA+GGG | + | chr1_2:62548591-62548610 | Msa0083460:CDS | 45.0% | |
| !! | ATTATTATTTGAATAAATTA+GGG | - | chr1_2:62545932-62545951 | None:intergenic | 5.0% |
| !! | TATTATTATTTGAATAAATT+AGG | - | chr1_2:62545933-62545952 | None:intergenic | 5.0% |
| !!! | TCATTTTCTCGTCGGTTCGG+TGG | - | chr1_2:62545714-62545733 | None:intergenic | 50.0% |
| !! | TCCTTCAATGGGCTCTAAGG+GGG | - | chr1_2:62547304-62547323 | None:intergenic | 50.0% |
| ACTTAGTAACACGGCCCATG+CGG | - | chr1_2:62547398-62547417 | None:intergenic | 50.0% | |
| CGAAGAGACTGTGCACTTCT+AGG | - | chr1_2:62547630-62547649 | None:intergenic | 50.0% | |
| GCGTTTCAAATGGATGCCGA+AGG | + | chr1_2:62547894-62547913 | Msa0083460:intron | 50.0% | |
| CGTGGACCGCTTGTAAGCTA+AGG | + | chr1_2:62546678-62546697 | Msa0083460:intron | 55.0% | |
| GGACCGCTTGTAAGCTAAGG+AGG | + | chr1_2:62546681-62546700 | Msa0083460:intron | 55.0% | |
| !! | CCTTCAATGGGCTCTAAGGG+GGG | - | chr1_2:62547303-62547322 | None:intergenic | 55.0% |
| ! | TTTGGCTCGAAACCCCTCCT+TGG | - | chr1_2:62547463-62547482 | None:intergenic | 55.0% |
| TGAAACCAGGGTGGGATGCA+AGG | + | chr1_2:62547524-62547543 | Msa0083460:intron | 55.0% | |
| ! | TCTAAGGGGGGCTCTGATGG+TGG | - | chr1_2:62547291-62547310 | None:intergenic | 60.0% |
| CCCCCCTTAGAGCCCATTGA+AGG | + | chr1_2:62547300-62547319 | Msa0083460:CDS | 60.0% | |
| !! | GGCTCTAAGGGGGGCTCTGA+TGG | - | chr1_2:62547294-62547313 | None:intergenic | 65.0% |
| CCAGGGTGGGATGCAAGGCA+CGG | + | chr1_2:62547529-62547548 | Msa0083460:intron | 65.0% | |
| CCGTGCCTTGCATCCCACCC+TGG | - | chr1_2:62547532-62547551 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 62545613 | 62549218 | 62545613 | ID=Msa0083460;Name=Msa0083460 |
| chr1_2 | mRNA | 62545613 | 62549218 | 62545613 | ID=Msa0083460-mRNA-1;Parent=Msa0083460;Name=Msa0083460-mRNA-1;_AED=0.26;_eAED=0.26;_QI=117|0.5|0.33|1|0.5|0.33|3|0|420 |
| chr1_2 | exon | 62545613 | 62545760 | 62545613 | ID=Msa0083460-mRNA-1:exon:20821;Parent=Msa0083460-mRNA-1 |
| chr1_2 | exon | 62547193 | 62547533 | 62547193 | ID=Msa0083460-mRNA-1:exon:20822;Parent=Msa0083460-mRNA-1 |
| chr1_2 | exon | 62548328 | 62549218 | 62548328 | ID=Msa0083460-mRNA-1:exon:20823;Parent=Msa0083460-mRNA-1 |
| chr1_2 | five_prime_UTR | 62545613 | 62545729 | 62545613 | ID=Msa0083460-mRNA-1:five_prime_utr;Parent=Msa0083460-mRNA-1 |
| chr1_2 | CDS | 62545730 | 62545760 | 62545730 | ID=Msa0083460-mRNA-1:cds;Parent=Msa0083460-mRNA-1 |
| chr1_2 | CDS | 62547193 | 62547533 | 62547193 | ID=Msa0083460-mRNA-1:cds;Parent=Msa0083460-mRNA-1 |
| chr1_2 | CDS | 62548328 | 62549218 | 62548328 | ID=Msa0083460-mRNA-1:cds;Parent=Msa0083460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
