AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669440 MtrunA17_Chr4g0008591 95.624 617 10 6 1 616 1 601 0.0 1196
Msa0669440 MtrunA17_Chr7g0240371 57.677 508 155 16 117 616 61 516 2.85e-170 494
Msa0669440 MtrunA17_Chr4g0028701 47.205 322 106 6 203 460 238 559 1.19e-79 265
Msa0669440 MtrunA17_Chr2g0327021 47.482 278 119 2 196 446 234 511 7.67e-76 253
Msa0669440 MtrunA17_Chr5g0403251 44.681 329 148 8 167 468 297 618 7.65e-72 246
Msa0669440 MtrunA17_Chr8g0373801 47.078 308 135 5 181 462 359 664 2.83e-71 246
Msa0669440 MtrunA17_Chr1g0177751 47.451 255 99 4 209 435 160 407 1.36e-62 218
Msa0669440 MtrunA17_Chr7g0267481 42.088 297 121 5 214 473 175 457 2.85e-62 218
Msa0669440 MtrunA17_Chr8g0387321 46.183 262 93 6 210 437 185 432 3.36e-61 214
Msa0669440 MtrunA17_Chr4g0025521 44.565 276 128 5 210 462 217 490 1.43e-60 214
Msa0669440 MtrunA17_Chr3g0141931 41.328 271 128 5 207 452 162 426 2.58e-60 207
Msa0669440 MtrunA17_Chr1g0155681 54.545 176 76 1 269 444 255 426 5.50e-60 211
Msa0669440 MtrunA17_Chr3g0141941 41.985 262 125 3 206 444 158 415 2.71e-58 204
Msa0669440 MtrunA17_Chr1g0151681 38.071 197 118 4 269 464 322 515 1.20e-36 144
Msa0669440 MtrunA17_Chr5g0413201 54.902 51 23 0 385 435 246 296 5.98e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669440 AT5G02030.1 46.004 513 201 17 140 616 103 575 1.31e-110 343
Msa0669440 AT2G27990.1 45.455 308 142 5 148 446 206 496 5.20e-73 245
Msa0669440 AT4G36870.2 50.000 256 102 5 210 441 312 565 1.11e-65 229
Msa0669440 AT4G36870.1 50.000 256 102 5 210 441 312 565 1.11e-65 229
Msa0669440 AT1G75410.1 44.828 261 117 5 205 444 162 416 1.01e-63 219
Msa0669440 AT1G75410.2 44.828 261 117 5 205 444 162 416 1.01e-63 219
Msa0669440 AT1G19700.1 45.956 272 103 7 206 444 161 421 1.32e-63 219
Msa0669440 AT1G19700.3 45.956 272 103 7 206 444 161 421 1.32e-63 219
Msa0669440 AT1G19700.5 45.956 272 103 7 206 444 161 421 1.32e-63 219
Msa0669440 AT1G19700.4 45.956 272 103 7 206 444 161 421 1.32e-63 219
Msa0669440 AT1G19700.2 45.956 272 103 7 206 444 161 421 1.32e-63 219
Msa0669440 AT2G23760.2 48.649 259 102 6 210 441 237 491 2.13e-63 221
Msa0669440 AT2G23760.1 48.649 259 102 6 210 441 237 491 2.13e-63 221
Msa0669440 AT2G23760.3 48.649 259 102 6 210 441 237 491 2.13e-63 221
Msa0669440 AT2G16400.1 35.765 425 211 14 204 616 108 482 4.41e-63 216
Msa0669440 AT4G34610.2 37.529 429 210 15 210 616 140 532 3.85e-62 215
Msa0669440 AT4G34610.4 37.529 429 210 15 210 616 140 532 3.85e-62 215
Msa0669440 AT4G34610.3 37.529 429 210 15 210 616 140 532 3.85e-62 215
Msa0669440 AT4G34610.1 37.529 429 210 15 210 616 140 532 3.85e-62 215
Msa0669440 AT2G35940.3 40.118 339 147 8 195 485 175 505 3.65e-58 207
Msa0669440 AT2G35940.1 40.118 339 147 8 195 485 175 505 3.65e-58 207
Msa0669440 AT2G35940.2 40.118 339 147 8 195 485 175 505 3.65e-58 207
Msa0669440 AT2G27220.1 44.958 238 95 7 216 441 82 295 4.82e-56 196
Msa0669440 AT2G27220.3 44.958 238 95 7 216 441 82 295 4.82e-56 196
Msa0669440 AT5G41410.1 35.920 451 204 19 214 615 197 611 1.02e-55 199
Msa0669440 AT2G23760.4 40.193 311 103 7 210 441 237 543 1.04e-53 195
Msa0669440 AT2G27220.2 41.797 256 95 8 216 441 82 313 2.47e-52 186
Msa0669440 AT4G36870.4 46.835 237 100 5 210 422 312 546 1.13e-51 187
Msa0669440 AT4G36870.3 46.383 235 100 5 210 420 312 544 2.58e-50 183
Msa0669440 AT1G75410.3 42.017 238 111 5 205 421 162 393 2.86e-49 177
Msa0669440 AT1G75430.1 37.545 277 137 9 211 458 17 286 5.71e-48 170
Msa0669440 AT2G27990.2 38.168 262 136 5 148 400 206 450 3.00e-42 159
Msa0669440 AT4G32980.1 37.853 177 95 3 269 441 274 439 1.11e-33 134
Msa0669440 AT4G32980.2 37.853 177 95 3 269 441 274 439 1.11e-33 134
Msa0669440 AT1G75430.2 31.507 219 114 9 211 400 17 228 4.48e-22 97.4
Msa0669440 AT1G23380.2 52.727 55 26 0 381 435 255 309 2.59e-11 65.9
Msa0669440 AT1G23380.1 52.727 55 26 0 381 435 253 307 2.69e-11 65.9
Msa0669440 AT1G70510.1 52.727 55 26 0 381 435 237 291 9.68e-11 63.9

Find 126 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAATTACCTTCATTAT+TGG 0.154139 4_4:+11151910 None:intergenic
CAAGAGAAGATCAAGGAAAA+AGG 0.221518 4_4:-11156941 Msa0669440:CDS
AATCGTTGAGCTGCACTTAA+AGG 0.224777 4_4:+11151950 None:intergenic
GAATCACAAAATAGGCATTT+TGG 0.235036 4_4:-11151875 Msa0669440:CDS
AGTTCAGATTGTTGTTTCTT+TGG 0.238431 4_4:+11157476 None:intergenic
ACATCATTTGAGTATGTTTC+CGG 0.258945 4_4:-11153429 Msa0669440:CDS
ACAGAAGCATATCCAGTAAA+TGG 0.287637 4_4:+11156567 None:intergenic
TATAGTGACCGGATAGTTAC+TGG 0.292924 4_4:+11157562 None:intergenic
AGATATGGATCTATGATTTA+TGG 0.297472 4_4:-11156654 Msa0669440:CDS
AAAGAAGGTATAATAATTAA+TGG 0.298565 4_4:+11157340 None:intergenic
TTGGTTGAAGGAGGAGGAGG+AGG 0.308929 4_4:-11156609 Msa0669440:CDS
CTTCAAGCATCTAAAATGTT+TGG 0.311343 4_4:+11153359 None:intergenic
TTTGATGATGGAATCTCCTT+TGG 0.312465 4_4:-11156433 Msa0669440:CDS
TGCAGCTCCTTATGCAAGTT+TGG 0.333083 4_4:-11153397 Msa0669440:CDS
CCAACTACAGTTCAATAATA+AGG 0.350401 4_4:-11153322 Msa0669440:CDS
TTAAGTGCAGCTCAACGATT+TGG 0.354571 4_4:-11151947 Msa0669440:CDS
TTATTCAAAGTCTCAAAATA+AGG 0.356326 4_4:+11156864 None:intergenic
GATGAAAGTGTAGACATAGT+AGG 0.360339 4_4:+11157534 None:intergenic
TCATAGATCCATATCTTTGT+AGG 0.361094 4_4:+11156661 None:intergenic
TACCTTCATTATTGGTTTCA+AGG 0.361603 4_4:+11151918 None:intergenic
TGCTGATTCTTCTTTGATGA+TGG 0.364670 4_4:-11156445 Msa0669440:CDS
ATCTAGGAGATTCTTCCTTC+CGG 0.381585 4_4:+11153280 None:intergenic
GGTGGTGGAGGTGTGATTCA+AGG 0.382359 4_4:-11156633 Msa0669440:CDS
GTTGGTAGTGGAAGCAATAA+TGG 0.383790 4_4:-11152064 Msa0669440:CDS
AATTATGCTTCAAACCTTGT+TGG 0.386490 4_4:+11157024 None:intergenic
TGACTCCTAACTGGTATGTT+AGG 0.388310 4_4:+11152160 None:intergenic
GAGTTGAACCTACAAAGATA+TGG 0.397583 4_4:-11156669 Msa0669440:CDS
TAAATGCAAGAGTAAGGCTT+TGG 0.402125 4_4:-11152381 Msa0669440:CDS
GTTGGAAATCTTGGTGTTTG+TGG 0.405935 4_4:-11156486 Msa0669440:CDS
TTGTGTATCAGGTGTCTAAC+TGG 0.406405 4_4:-11152408 Msa0669440:intron
AAGGAAGAATCTCCTAGATT+TGG 0.408203 4_4:-11153276 Msa0669440:CDS
TATCTCTTCTACTTTGTTGT+GGG 0.415721 4_4:+11157138 None:intergenic
CAAGGGTTGGTTGAAGGAGG+AGG 0.420449 4_4:-11156615 Msa0669440:CDS
TGAGCTGCACTTAAAGGAAA+TGG 0.423599 4_4:+11151956 None:intergenic
TTCTTCTTCTAATTCTATGA+AGG 0.424324 4_4:-11156997 Msa0669440:CDS
TGGAGGTGTGATTCAAGGGT+TGG 0.429011 4_4:-11156628 Msa0669440:CDS
CCTTATTATTGAACTGTAGT+TGG 0.430289 4_4:+11153322 None:intergenic
TGTTAGTAGTAATTTACCTT+TGG 0.434906 4_4:-11156691 Msa0669440:CDS
GGGTTGGTTGAAGGAGGAGG+AGG 0.435240 4_4:-11156612 Msa0669440:CDS
TATGTTAGGAATTTCATTTA+CGG 0.435500 4_4:+11152174 None:intergenic
CTTTCACTATTGCCAAATCT+AGG 0.438508 4_4:+11153264 None:intergenic
TTTGTGCTTGATAAAGAAAA+GGG 0.439408 4_4:+11156817 None:intergenic
CTTTATCAAAATCATGGGAT+TGG 0.443197 4_4:-11151989 Msa0669440:CDS
TGTTGTCCTTGACTCCTAAC+TGG 0.446716 4_4:+11152151 None:intergenic
TTTATCGCCAAACTTGCATA+AGG 0.446881 4_4:+11153390 None:intergenic
AACAAAATGAAGAAAATTGT+CGG 0.448717 4_4:-11152300 Msa0669440:CDS
GCAGCTCAACGATTTGGTCT+TGG 0.449764 4_4:-11151941 Msa0669440:CDS
GATGTTAAGTTTATTATTGA+TGG 0.450666 4_4:+11157364 None:intergenic
ATAATGTTGGCTAAACAAAC+TGG 0.451025 4_4:-11152515 Msa0669440:CDS
GTGGTGGAGGTGTGATTCAA+GGG 0.451179 4_4:-11156632 Msa0669440:CDS
TTATCTCTTCTACTTTGTTG+TGG 0.452626 4_4:+11157137 None:intergenic
AACTGGTCTGTCGCGTAGCC+AGG 0.459764 4_4:-11152498 Msa0669440:intron
TTTATAAACCATTAGAAACT+AGG 0.461852 4_4:-11151718 Msa0669440:three_prime_UTR
TCTTCTAACAATTCTTGAGC+TGG 0.463720 4_4:+11156519 None:intergenic
CCTCTTTGAGGTCGCCATAC+AGG 0.463860 4_4:+11153195 None:intergenic
ATGAAAGTGTAGACATAGTA+GGG 0.464042 4_4:+11157535 None:intergenic
CGCTCGGGGAGTCCTCTTTG+AGG 0.471673 4_4:+11153183 None:intergenic
ATGTGTGATGTTGGAAATCT+TGG 0.472538 4_4:-11156495 Msa0669440:CDS
GTGATTCAAGGGTTGGTTGA+AGG 0.473616 4_4:-11156621 Msa0669440:CDS
TTGAGTGAAGAAGATCCATT+TGG 0.474029 4_4:-11156405 Msa0669440:CDS
CTAGGACTTTATCAAAATCA+TGG 0.477214 4_4:-11151995 Msa0669440:CDS
TAACCTGACCTATGGCTGTA+AGG 0.479106 4_4:+11153234 None:intergenic
CCAACACCTACATGTTGAAA+AGG 0.482247 4_4:+11152097 None:intergenic
CAAATGTTTCATGACTTTGT+AGG 0.488512 4_4:-11151833 Msa0669440:CDS
GGTTCATAAATGCAAGAGTA+AGG 0.489288 4_4:-11152387 Msa0669440:CDS
TGTCGATGTAGACGGATTCT+CGG 0.491856 4_4:+11152228 None:intergenic
AAAGAAGAAGAATCATAGAA+AGG 0.493187 4_4:+11157065 None:intergenic
TTGAGCAGCAACAACCTGTA+TGG 0.499228 4_4:-11153209 Msa0669440:CDS
AGAACAGTCACAGCACGCTC+GGG 0.499463 4_4:+11153168 None:intergenic
ATTTACGGCACGTTTGTAAG+TGG 0.501152 4_4:+11152189 None:intergenic
ATGTGAATTTCTTCCACCAT+TGG 0.504116 4_4:+11152355 None:intergenic
GGCTATAACCAGTAACTATC+CGG 0.510944 4_4:-11157570 Msa0669440:five_prime_UTR
ATTCAAGGGTTGGTTGAAGG+AGG 0.514542 4_4:-11156618 Msa0669440:CDS
AAATTCCTAACATACCAGTT+AGG 0.514657 4_4:-11152165 Msa0669440:CDS
GAATCATAGAAAGGAAGTAA+AGG 0.518144 4_4:+11157074 None:intergenic
GGCCTTGAAACCAATAATGA+AGG 0.519264 4_4:-11151920 Msa0669440:CDS
TCTTGGTGTTTGTGGTGAGA+AGG 0.523287 4_4:-11156478 Msa0669440:CDS
AACAGGTTTATAAGCGGTAC+AGG 0.526188 4_4:-11153482 Msa0669440:intron
ATAAAAGCACAAGAGAAACT+TGG 0.528456 4_4:+11151736 None:intergenic
AGATTTGGCAATAGTGAAAG+AGG 0.531484 4_4:-11153261 Msa0669440:CDS
TTATTGCGACCATCACCAAA+TGG 0.532053 4_4:+11156390 None:intergenic
TTAGAAGAGATGTGTGATGT+TGG 0.533763 4_4:-11156504 Msa0669440:CDS
GGAATGAACATTGTTGGTAG+TGG 0.533845 4_4:-11152076 Msa0669440:CDS
GGTGTTGGAATGAACATTGT+TGG 0.538133 4_4:-11152082 Msa0669440:CDS
AACAAAGTGTGAACTATGAA+AGG 0.544169 4_4:+11157512 None:intergenic
TCTTCACTCAATCTTTCCAA+AGG 0.544697 4_4:+11156417 None:intergenic
GGACCTTACAGCCATAGGTC+AGG 0.547661 4_4:-11153237 Msa0669440:CDS
AGATAAGCTTAGAGTTGTTG+TGG 0.547689 4_4:-11157120 Msa0669440:CDS
TAGGACTTTATCAAAATCAT+GGG 0.549166 4_4:-11151994 Msa0669440:CDS
TGATACAGACAAAATAATGT+TGG 0.550720 4_4:-11152528 Msa0669440:CDS
ATGAAGCTGGATTGAAGTGA+TGG 0.550762 4_4:+11157298 None:intergenic
CTTTGTAGGTTCAACTCCAA+AGG 0.551629 4_4:+11156675 None:intergenic
AAGAACAGTCACAGCACGCT+CGG 0.552428 4_4:+11153167 None:intergenic
AACATACCAGTTAGGAGTCA+AGG 0.556741 4_4:-11152157 Msa0669440:CDS
CTGTGACTGTTCTTAGAGCA+TGG 0.561711 4_4:-11153158 Msa0669440:CDS
GAAGGTAATTATGTTATGAG+TGG 0.565516 4_4:-11151902 Msa0669440:CDS
ACTTTGAATAATAACAATCA+AGG 0.567232 4_4:-11156852 Msa0669440:CDS
AGGAGCTGCATTGTTGAGGC+CGG 0.568570 4_4:+11153410 None:intergenic
TTTGGAAGAGATGTAATTGG+TGG 0.569163 4_4:-11151857 Msa0669440:CDS
ATTGTTGTTTCTTTGGAACA+AGG 0.573851 4_4:+11157483 None:intergenic
TCTATGATTTATGGTGGTGG+AGG 0.573959 4_4:-11156645 Msa0669440:CDS
TTGGAAGAGATGTAATTGGT+GGG 0.574617 4_4:-11151856 Msa0669440:CDS
AGTAGGGTTTCTATAGTGAC+CGG 0.574764 4_4:+11157551 None:intergenic
ATACTACCAACAGATGCAAT+CGG 0.575247 4_4:-11153457 Msa0669440:CDS
CATAAGGAGCTGCATTGTTG+AGG 0.575307 4_4:+11153406 None:intergenic
GATTTGGCAATAGTGAAAGA+GGG 0.577653 4_4:-11153260 Msa0669440:CDS
GCTCAAGATAACCTGACCTA+TGG 0.580908 4_4:+11153226 None:intergenic
GGATCTATGATTTATGGTGG+TGG 0.583114 4_4:-11156648 Msa0669440:CDS
GAAACTAGAGAAGTATCTGA+AGG 0.590625 4_4:+11152250 None:intergenic
AACTTATCTGTCGATGTAGA+CGG 0.592212 4_4:+11152220 None:intergenic
GAAGAAGATCCATTTGGTGA+TGG 0.601601 4_4:-11156399 Msa0669440:CDS
GATGAAAGTGACAAAGACAA+AGG 0.614377 4_4:+11156723 None:intergenic
AGTAAGGCTTTGGAAACCAA+TGG 0.617622 4_4:-11152371 Msa0669440:CDS
TTACGACCGATTGCATCTGT+TGG 0.619652 4_4:+11153451 None:intergenic
ACACAGAACAAAGATATCAC+CGG 0.630096 4_4:-11157591 Msa0669440:five_prime_UTR
AGTAATGTGTCATTGACACT+AGG 0.633869 4_4:-11152013 Msa0669440:CDS
GAACAGTCACAGCACGCTCG+GGG 0.634057 4_4:+11153169 None:intergenic
GGATAGTTACTGGTTATAGC+CGG 0.636899 4_4:+11157572 None:intergenic
CCTGTATGGCGACCTCAAAG+AGG 0.642112 4_4:-11153195 Msa0669440:CDS
ATTGTTGACTATGCTTGATG+AGG 0.645801 4_4:-11156361 Msa0669440:intron
TATGGATCTATGATTTATGG+TGG 0.657447 4_4:-11156651 Msa0669440:CDS
ATTTGGCAATAGTGAAAGAG+GGG 0.658417 4_4:-11153259 Msa0669440:CDS
TTACTCAACAGGTTTATAAG+CGG 0.661325 4_4:-11153488 Msa0669440:intron
AAATTCACATGTTAGAAACA+AGG 0.662688 4_4:-11152342 Msa0669440:CDS
AAGGCTTTGGAAACCAATGG+TGG 0.671971 4_4:-11152368 Msa0669440:CDS
TTTGGCAATAGTGAAAGAGG+GGG 0.716637 4_4:-11153258 Msa0669440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTATTTTTTTTCATT+TGG - chr4_4:11152034-11152053 Msa0669440:CDS 10.0%
!!! TTTAGTATTTTTTTTCATTT+GGG - chr4_4:11152035-11152054 Msa0669440:CDS 10.0%
!!! GTTTTAATATATTTTTTCTA+TGG - chr4_4:11152100-11152119 Msa0669440:CDS 10.0%
!!! TTTCCATTTTTAATTTTTTT+TGG - chr4_4:11153183-11153202 Msa0669440:CDS 10.0%
!!! AAGAAAAAAATCTATTTTTT+AGG - chr4_4:11154328-11154347 Msa0669440:intron 10.0%
!!! AAAGAAGGTATAATAATTAA+TGG + chr4_4:11151955-11151974 None:intergenic 15.0%
!! TCTCCAAAAAAAATTAAAAA+TGG + chr4_4:11153189-11153208 None:intergenic 15.0%
!!! TTAAGTATTCTTTTAAAAAG+TGG - chr4_4:11153322-11153341 Msa0669440:CDS 15.0%
!! TGTCTTAATTTCTAATTAAT+AGG - chr4_4:11153452-11153471 Msa0669440:CDS 15.0%
!! TTTCTAATTAATAGGTTAAT+AGG - chr4_4:11153460-11153479 Msa0669440:CDS 15.0%
!! TTAAAGTTATACTATATTGA+AGG - chr4_4:11153687-11153706 Msa0669440:intron 15.0%
!!! AAGAAACTTATATTTTTAGA+TGG - chr4_4:11153779-11153798 Msa0669440:intron 15.0%
!!! TATATTTTTAGATGGTAATA+AGG - chr4_4:11153787-11153806 Msa0669440:intron 15.0%
!! CAAAATTTCACTTATAATTA+GGG + chr4_4:11153936-11153955 None:intergenic 15.0%
!! ACAAAATTTCACTTATAATT+AGG + chr4_4:11153937-11153956 None:intergenic 15.0%
!!! ATTATAAGTGAAATTTTGTT+TGG - chr4_4:11153938-11153957 Msa0669440:intron 15.0%
!!! TTATAAGTGAAATTTTGTTT+GGG - chr4_4:11153939-11153958 Msa0669440:intron 15.0%
!! AAAACAAACACTTTAAATTA+GGG + chr4_4:11154029-11154048 None:intergenic 15.0%
!! AAAAACAAACACTTTAAATT+AGG + chr4_4:11154030-11154049 None:intergenic 15.0%
!!! TAATATTTCACAATTTTCTA+TGG - chr4_4:11154051-11154070 Msa0669440:intron 15.0%
!! AGAAAAATAAATAACTTCAT+TGG - chr4_4:11154104-11154123 Msa0669440:intron 15.0%
!!! TTTTATCTATTGATCTTAAT+GGG - chr4_4:11154749-11154768 Msa0669440:intron 15.0%
!!! ATAATTAGATTCTGAAATAT+GGG + chr4_4:11154981-11155000 None:intergenic 15.0%
!!! AATAATTAGATTCTGAAATA+TGG + chr4_4:11154982-11155001 None:intergenic 15.0%
!! ATAGATTTATAGATTTATGT+TGG + chr4_4:11155525-11155544 None:intergenic 15.0%
!!! TTGTAATTTTAATACATTCA+GGG + chr4_4:11156363-11156382 None:intergenic 15.0%
!!! TTTGTAATTTTAATACATTC+AGG + chr4_4:11156364-11156383 None:intergenic 15.0%
!! CTAACAAAAAATATAATTCA+GGG + chr4_4:11156392-11156411 None:intergenic 15.0%
!! ACTAACAAAAAATATAATTC+AGG + chr4_4:11156393-11156412 None:intergenic 15.0%
!! GATGTTAAGTTTATTATTGA+TGG + chr4_4:11151931-11151950 None:intergenic 20.0%
!!! GGTCATTAAAAAAATTTGTT+GGG - chr4_4:11152056-11152075 Msa0669440:CDS 20.0%
!! TTATTCAAAGTCTCAAAATA+AGG + chr4_4:11152431-11152450 None:intergenic 20.0%
!! ACTTTGAATAATAACAATCA+AGG - chr4_4:11152440-11152459 Msa0669440:intron 20.0%
!!! ATTATTTTTGTCATTTTGTG+TGG - chr4_4:11153105-11153124 Msa0669440:intron 20.0%
!! TATTCTAAATACTCTCAATT+TGG - chr4_4:11153236-11153255 Msa0669440:CDS 20.0%
!! ATTCTAAATACTCTCAATTT+GGG - chr4_4:11153237-11153256 Msa0669440:CDS 20.0%
!! ATCTTAATTTATGTGCATTA+AGG - chr4_4:11153426-11153445 Msa0669440:CDS 20.0%
!!! GCTTTTTAAGAAAAGTTAAT+GGG - chr4_4:11153566-11153585 Msa0669440:intron 20.0%
!! TTAAAAAAGAAATCTATGGT+TGG + chr4_4:11153632-11153651 None:intergenic 20.0%
!! TCACTTAAAAAAGAAATCTA+TGG + chr4_4:11153636-11153655 None:intergenic 20.0%
!!! AATTTTCTATGGAAGTATAT+TGG - chr4_4:11154062-11154081 Msa0669440:intron 20.0%
!!! TTTATAGACCAATTTGTTAA+TGG - chr4_4:11154147-11154166 Msa0669440:intron 20.0%
!! TATTTAGACCATTAACAAAT+TGG + chr4_4:11154158-11154177 None:intergenic 20.0%
!! TTCTTATAATTATGACTAGA+GGG + chr4_4:11154313-11154332 None:intergenic 20.0%
!! TTTCTTATAATTATGACTAG+AGG + chr4_4:11154314-11154333 None:intergenic 20.0%
!! CAATACTCTTTCTTATATTT+GGG - chr4_4:11154465-11154484 Msa0669440:intron 20.0%
!! TAGAATCATAAATAATCTTG+TGG - chr4_4:11154553-11154572 Msa0669440:intron 20.0%
!!! CTTTTATCTATTGATCTTAA+TGG - chr4_4:11154748-11154767 Msa0669440:intron 20.0%
!! AATAAACTATCAAAATGCTT+AGG - chr4_4:11154790-11154809 Msa0669440:intron 20.0%
!! ATAAACTATCAAAATGCTTA+GGG - chr4_4:11154791-11154810 Msa0669440:intron 20.0%
!!! TAAAATGGAATTTCTGATTT+TGG + chr4_4:11155098-11155117 None:intergenic 20.0%
!! ATAAGTAAGTTTGCATAAAA+AGG - chr4_4:11155280-11155299 Msa0669440:intron 20.0%
!! TTGAAGTGGTTATATAATTA+GGG + chr4_4:11155397-11155416 None:intergenic 20.0%
!!! TCCTTGTTTAAGAATTAAAA+TGG - chr4_4:11155484-11155503 Msa0669440:intron 20.0%
!!! ACCATTTTAATTCTTAAACA+AGG + chr4_4:11155488-11155507 None:intergenic 20.0%
!! CAAATTTGATATACCAATAA+AGG - chr4_4:11156229-11156248 Msa0669440:intron 20.0%
!! ATAGATAATGTTATATTGGT+AGG + chr4_4:11156863-11156882 None:intergenic 20.0%
!! CAAGATAGATAATGTTATAT+TGG + chr4_4:11156867-11156886 None:intergenic 20.0%
!! AACAAAATGAAGAAAATTGT+CGG - chr4_4:11156992-11157011 Msa0669440:CDS 20.0%
!! TATGTTAGGAATTTCATTTA+CGG + chr4_4:11157121-11157140 None:intergenic 20.0%
!! AACATAATTACCTTCATTAT+TGG + chr4_4:11157385-11157404 None:intergenic 20.0%
!! TTTATAAACCATTAGAAACT+AGG - chr4_4:11157574-11157593 Msa0669440:five_prime_UTR 20.0%
! GACAAAAAAAGAAAGAAAGA+AGG + chr4_4:11151970-11151989 None:intergenic 25.0%
!! AAACTTTTTATAGATGAAGC+TGG + chr4_4:11152010-11152029 None:intergenic 25.0%
! GGGTCATTAAAAAAATTTGT+TGG - chr4_4:11152055-11152074 Msa0669440:CDS 25.0%
! AAAGAAGAAGAATCATAGAA+AGG + chr4_4:11152230-11152249 None:intergenic 25.0%
!! ACTAATTTTACTAACCAACA+AGG - chr4_4:11152254-11152273 Msa0669440:CDS 25.0%
! TTCTTCTTCTAATTCTATGA+AGG - chr4_4:11152295-11152314 Msa0669440:CDS 25.0%
! TTTGTGCTTGATAAAGAAAA+GGG + chr4_4:11152478-11152497 None:intergenic 25.0%
!! TTTTGTGCTTGATAAAGAAA+AGG + chr4_4:11152479-11152498 None:intergenic 25.0%
! TGTTAGTAGTAATTTACCTT+TGG - chr4_4:11152601-11152620 Msa0669440:intron 25.0%
! AGATATGGATCTATGATTTA+TGG - chr4_4:11152638-11152657 Msa0669440:intron 25.0%
!!! CTGTTTTTTTCTTCTTTTGT+CGG - chr4_4:11153054-11153073 Msa0669440:intron 25.0%
!!! GTATTCTTTTAAAAAGTGGA+AGG - chr4_4:11153326-11153345 Msa0669440:CDS 25.0%
!!! AGGTTAATAGGTTAGTTTTA+TGG - chr4_4:11153472-11153491 Msa0669440:CDS 25.0%
! ATTCTTGCATTATATTGTGA+TGG - chr4_4:11153521-11153540 Msa0669440:intron 25.0%
!!! GGCTTTTTAAGAAAAGTTAA+TGG - chr4_4:11153565-11153584 Msa0669440:intron 25.0%
! TTTAAGAAAAGTTAATGGGA+AGG - chr4_4:11153570-11153589 Msa0669440:intron 25.0%
!! GAAGTATAAATCTTTTCCAA+TGG + chr4_4:11153716-11153735 None:intergenic 25.0%
!! CTATTTCTCCCATAAATTAT+TGG - chr4_4:11153897-11153916 Msa0669440:intron 25.0%
! GGTGTATACCAATAATTTAT+GGG + chr4_4:11153908-11153927 None:intergenic 25.0%
! AGGTGTATACCAATAATTTA+TGG + chr4_4:11153909-11153928 None:intergenic 25.0%
! TTTGTTTGGGTCTATTTATA+AGG - chr4_4:11153952-11153971 Msa0669440:intron 25.0%
! GCAATACTCTTTCTTATATT+TGG - chr4_4:11154464-11154483 Msa0669440:intron 25.0%
! TCTTGTGGTACATATTTAAT+TGG - chr4_4:11154568-11154587 Msa0669440:intron 25.0%
! TATCACGATTATTGTCATAT+TGG + chr4_4:11154644-11154663 None:intergenic 25.0%
! AGTTTATCTGGAAAAAGAAA+TGG - chr4_4:11154707-11154726 Msa0669440:intron 25.0%
! GTTTATCTGGAAAAAGAAAT+GGG - chr4_4:11154708-11154727 Msa0669440:intron 25.0%
! AAATATGGGTTTGAAAAGAT+AGG + chr4_4:11154967-11154986 None:intergenic 25.0%
! CTTGAAGTGGTTATATAATT+AGG + chr4_4:11155398-11155417 None:intergenic 25.0%
! CTAATTATATAACCACTTCA+AGG - chr4_4:11155396-11155415 Msa0669440:intron 25.0%
! GTGTATGTGATTCATAATTT+AGG + chr4_4:11155445-11155464 None:intergenic 25.0%
!!! GTTCTATATTTTTACTCAAC+AGG - chr4_4:11155793-11155812 Msa0669440:intron 25.0%
! GAAATAAACGAAACATAGAA+TGG + chr4_4:11156190-11156209 None:intergenic 25.0%
!!! TTTTAGTTCTTGAATGTGTA+CGG - chr4_4:11156321-11156340 Msa0669440:intron 25.0%
! TACTAAATTGACCAACAAAA+TGG - chr4_4:11156422-11156441 Msa0669440:CDS 25.0%
! ATAAACGAAATACACATTCT+CGG - chr4_4:11156496-11156515 Msa0669440:CDS 25.0%
!! TTCAAAAGCTTTTACATTTG+TGG - chr4_4:11156698-11156717 Msa0669440:CDS 25.0%
!!! ATTATTTTGTCTGTATCAGT+AGG + chr4_4:11156762-11156781 None:intergenic 25.0%
! TGATACAGACAAAATAATGT+TGG - chr4_4:11156764-11156783 Msa0669440:CDS 25.0%
! AAATTCACATGTTAGAAACA+AGG - chr4_4:11156950-11156969 Msa0669440:CDS 25.0%
!!! TCATTTTGTTGTGAATCTTT+TGG + chr4_4:11156982-11157001 None:intergenic 25.0%
! TAGGACTTTATCAAAATCAT+GGG - chr4_4:11157298-11157317 Msa0669440:five_prime_UTR 25.0%
!!! GTATGTACGTTTATTTTGAT+TGG - chr4_4:11157513-11157532 Msa0669440:five_prime_UTR 25.0%
!! TTTTTCTTCCTAGTTTCTAA+TGG + chr4_4:11157585-11157604 None:intergenic 25.0%
! ATGAAAGTGTAGACATAGTA+GGG + chr4_4:11151760-11151779 None:intergenic 30.0%
AACAAAGTGTGAACTATGAA+AGG + chr4_4:11151783-11151802 None:intergenic 30.0%
!! ATTGTTGTTTCTTTGGAACA+AGG + chr4_4:11151812-11151831 None:intergenic 30.0%
!! AGTTCAGATTGTTGTTTCTT+TGG + chr4_4:11151819-11151838 None:intergenic 30.0%
! TATCTCTTCTACTTTGTTGT+GGG + chr4_4:11152157-11152176 None:intergenic 30.0%
TTATCTCTTCTACTTTGTTG+TGG + chr4_4:11152158-11152177 None:intergenic 30.0%
GAATCATAGAAAGGAAGTAA+AGG + chr4_4:11152221-11152240 None:intergenic 30.0%
AATTATGCTTCAAACCTTGT+TGG + chr4_4:11152271-11152290 None:intergenic 30.0%
AAGAGAAGATCAAGGAAAAA+GGG - chr4_4:11152352-11152371 Msa0669440:CDS 30.0%
TCATAGATCCATATCTTTGT+AGG + chr4_4:11152634-11152653 None:intergenic 30.0%
TATGGATCTATGATTTATGG+TGG - chr4_4:11152641-11152660 Msa0669440:intron 30.0%
!!! TTTTTGTCATTTTGTGTGGA+TGG - chr4_4:11153109-11153128 Msa0669440:intron 30.0%
!!! TGGAAGGTTTATTTTGTTAG+TGG - chr4_4:11153342-11153361 Msa0669440:CDS 30.0%
!!! AGGTTTATTTTGTTAGTGGT+AGG - chr4_4:11153346-11153365 Msa0669440:CDS 30.0%
!!! CTAGTTTAGCTTTTGTTTCA+TGG - chr4_4:11153399-11153418 Msa0669440:CDS 30.0%
!!! TTTAGCTTTTGTTTCATGGA+TGG - chr4_4:11153403-11153422 Msa0669440:CDS 30.0%
! TTGCATTATATTGTGATGGA+TGG - chr4_4:11153525-11153544 Msa0669440:intron 30.0%
ACTATATTGAAGGAATCCAT+TGG - chr4_4:11153697-11153716 Msa0669440:intron 30.0%
TTAGATGGTAATAAGGTGAT+TGG - chr4_4:11153794-11153813 Msa0669440:intron 30.0%
CTAAAGCCAATCTTACATAA+AGG + chr4_4:11153820-11153839 None:intergenic 30.0%
!! TAAGATTGGCTTTAGTTGTT+TGG - chr4_4:11153825-11153844 Msa0669440:intron 30.0%
ATAAGGAAAAAAGTTGCAAC+CGG - chr4_4:11153969-11153988 Msa0669440:intron 30.0%
AAGCAATAATTTCATCTTGC+CGG + chr4_4:11153991-11154010 None:intergenic 30.0%
! TTTTTGCTTATAGTTGTGAC+CGG - chr4_4:11154426-11154445 Msa0669440:intron 30.0%
! TTCTTATATTTGGGACAAGA+AGG - chr4_4:11154474-11154493 Msa0669440:intron 30.0%
TGTGGTACATATTTAATTGG+TGG - chr4_4:11154571-11154590 Msa0669440:intron 30.0%
AATGAACGTTATGTATGTCT+TGG - chr4_4:11154677-11154696 Msa0669440:intron 30.0%
ATTCTTTAACCAATGCTCTT+AGG - chr4_4:11155355-11155374 Msa0669440:intron 30.0%
TTGATTGCATAGTCATTTCT+TGG + chr4_4:11155585-11155604 None:intergenic 30.0%
CATATCAATGAAACAGCAAA+AGG + chr4_4:11155638-11155657 None:intergenic 30.0%
GTTCTATACTTATTATCCGT+CGG - chr4_4:11155686-11155705 Msa0669440:intron 30.0%
TATCAAACATTGTCAACTGA+AGG + chr4_4:11155751-11155770 None:intergenic 30.0%
TTACTCAACAGGTTTATAAG+CGG - chr4_4:11155804-11155823 Msa0669440:intron 30.0%
ACATCATTTGAGTATGTTTC+CGG - chr4_4:11155863-11155882 Msa0669440:intron 30.0%
! CTTCAAGCATCTAAAATGTT+TGG + chr4_4:11155936-11155955 None:intergenic 30.0%
! ACATTTTAGATGCTTGAAGA+AGG - chr4_4:11155937-11155956 Msa0669440:intron 30.0%
CCTTATTATTGAACTGTAGT+TGG + chr4_4:11155973-11155992 None:intergenic 30.0%
CCAACTACAGTTCAATAATA+AGG - chr4_4:11155970-11155989 Msa0669440:intron 30.0%
TGGTATATCAAATTTGACCA+AGG + chr4_4:11156225-11156244 None:intergenic 30.0%
!!! GATGTTTCAATTTTTGGCAA+TGG + chr4_4:11156271-11156290 None:intergenic 30.0%
! AGCACAGATGTTTCAATTTT+TGG + chr4_4:11156277-11156296 None:intergenic 30.0%
AAAAATTGAAACATCTGTGC+TGG - chr4_4:11156276-11156295 Msa0669440:intron 30.0%
AAAATTGAAACATCTGTGCT+GGG - chr4_4:11156277-11156296 Msa0669440:intron 30.0%
TAAACGAAATACACATTCTC+GGG - chr4_4:11156497-11156516 Msa0669440:CDS 30.0%
! ACTCGTTTTATACTTTAGTC+AGG - chr4_4:11156597-11156616 Msa0669440:CDS 30.0%
TTATACTTTAGTCAGGATCA+TGG - chr4_4:11156604-11156623 Msa0669440:CDS 30.0%
TGCACAAGGAACAAAAAATA+AGG + chr4_4:11156734-11156753 None:intergenic 30.0%
! ATAATGTTGGCTAAACAAAC+TGG - chr4_4:11156777-11156796 Msa0669440:CDS 30.0%
TGGTAGGATTATAAATGCAT+TGG + chr4_4:11156847-11156866 None:intergenic 30.0%
CATTATCTATCTTGTGTATC+AGG - chr4_4:11156873-11156892 Msa0669440:CDS 30.0%
AAATTCCTAACATACCAGTT+AGG - chr4_4:11157127-11157146 Msa0669440:CDS 30.0%
CTAGGACTTTATCAAAATCA+TGG - chr4_4:11157297-11157316 Msa0669440:five_prime_UTR 30.0%
CTTTATCAAAATCATGGGAT+TGG - chr4_4:11157303-11157322 Msa0669440:five_prime_UTR 30.0%
!! TACCTTCATTATTGGTTTCA+AGG + chr4_4:11157377-11157396 None:intergenic 30.0%
GAAGGTAATTATGTTATGAG+TGG - chr4_4:11157390-11157409 Msa0669440:five_prime_UTR 30.0%
!!! GTGGTTTTGAATCACAAAAT+AGG - chr4_4:11157409-11157428 Msa0669440:five_prime_UTR 30.0%
! GAATCACAAAATAGGCATTT+TGG - chr4_4:11157417-11157436 Msa0669440:five_prime_UTR 30.0%
!! CATTTTGGAAGAGATGTAAT+TGG - chr4_4:11157432-11157451 Msa0669440:five_prime_UTR 30.0%
CAAATGTTTCATGACTTTGT+AGG - chr4_4:11157459-11157478 Msa0669440:five_prime_UTR 30.0%
! ATAAAAGCACAAGAGAAACT+TGG + chr4_4:11157559-11157578 None:intergenic 30.0%
ACACAGAACAAAGATATCAC+CGG - chr4_4:11151701-11151720 Msa0669440:three_prime_UTR 35.0%
! GATGAAAGTGTAGACATAGT+AGG + chr4_4:11151761-11151780 None:intergenic 35.0%
! TTTTTCTATGGCTAGTGATG+AGG - chr4_4:11152112-11152131 Msa0669440:CDS 35.0%
! TTTTCTATGGCTAGTGATGA+GGG - chr4_4:11152113-11152132 Msa0669440:CDS 35.0%
AGATAAGCTTAGAGTTGTTG+TGG - chr4_4:11152172-11152191 Msa0669440:CDS 35.0%
!!! CGTTTTTCAAGAGAAGATCA+AGG - chr4_4:11152344-11152363 Msa0669440:CDS 35.0%
CAAGAGAAGATCAAGGAAAA+AGG - chr4_4:11152351-11152370 Msa0669440:CDS 35.0%
GATGAAAGTGACAAAGACAA+AGG + chr4_4:11152572-11152591 None:intergenic 35.0%
GAGTTGAACCTACAAAGATA+TGG - chr4_4:11152623-11152642 Msa0669440:intron 35.0%
! ACAGAAGCATATCCAGTAAA+TGG + chr4_4:11152728-11152747 None:intergenic 35.0%
!! TGGATATGCTTCTGTTTTGA+AGG - chr4_4:11152733-11152752 Msa0669440:intron 35.0%
!!! CTTCTGTTTTGAAGGATTCT+AGG - chr4_4:11152741-11152760 Msa0669440:intron 35.0%
TCTTCTAACAATTCTTGAGC+TGG + chr4_4:11152776-11152795 None:intergenic 35.0%
TTAGAAGAGATGTGTGATGT+TGG - chr4_4:11152788-11152807 Msa0669440:intron 35.0%
ATGTGTGATGTTGGAAATCT+TGG - chr4_4:11152797-11152816 Msa0669440:intron 35.0%
!! TGCTGATTCTTCTTTGATGA+TGG - chr4_4:11152847-11152866 Msa0669440:intron 35.0%
!! TTTGATGATGGAATCTCCTT+TGG - chr4_4:11152859-11152878 Msa0669440:intron 35.0%
TCTTCACTCAATCTTTCCAA+AGG + chr4_4:11152878-11152897 None:intergenic 35.0%
TTGAGTGAAGAAGATCCATT+TGG - chr4_4:11152887-11152906 Msa0669440:intron 35.0%
! ATTGTTGACTATGCTTGATG+AGG - chr4_4:11152931-11152950 Msa0669440:intron 35.0%
AGGCTAACATAAGGTTTGAT+TGG - chr4_4:11153366-11153385 Msa0669440:CDS 35.0%
AATGGGAAGGAATATATGCA+TGG - chr4_4:11153583-11153602 Msa0669440:intron 35.0%
AGGAATATATGCATGGAGAT+TGG - chr4_4:11153590-11153609 Msa0669440:intron 35.0%
ACTATGTCACCCAATTTGTA+GGG - chr4_4:11153655-11153674 Msa0669440:intron 35.0%
GCAAATCATCCCTACAAATT+GGG + chr4_4:11153667-11153686 None:intergenic 35.0%
AGCAAATCATCCCTACAAAT+TGG + chr4_4:11153668-11153687 None:intergenic 35.0%
!! GATTGGCCTTTATGTAAGAT+TGG - chr4_4:11153811-11153830 Msa0669440:intron 35.0%
TCACTTATAATTAGGGCATG+AGG + chr4_4:11153929-11153948 None:intergenic 35.0%
!!! GAACTTGTTAAGGTGCTTTT+GGG + chr4_4:11154278-11154297 None:intergenic 35.0%
!! TACCTTGAAGGAACTTGTTA+AGG + chr4_4:11154288-11154307 None:intergenic 35.0%
!! GAGAACGTTGATAATTCACT+AGG - chr4_4:11154885-11154904 Msa0669440:intron 35.0%
! ATGCAGCATGGACTATAATA+TGG + chr4_4:11154923-11154942 None:intergenic 35.0%
TTGTAGAAATGTACTGCAGA+AGG - chr4_4:11155003-11155022 Msa0669440:intron 35.0%
TTAACACAAGTTTCACACGA+GGG + chr4_4:11155129-11155148 None:intergenic 35.0%
ATTAACACAAGTTTCACACG+AGG + chr4_4:11155130-11155149 None:intergenic 35.0%
! AACAAACGTTTTCCTTGAAG+TGG + chr4_4:11155411-11155430 None:intergenic 35.0%
TACACATCATTCACTTGTGA+AGG - chr4_4:11155460-11155479 Msa0669440:intron 35.0%
TAAAATGGTGCAAGTCATGA+CGG - chr4_4:11155499-11155518 Msa0669440:intron 35.0%
ATACTACCAACAGATGCAAT+CGG - chr4_4:11155835-11155854 Msa0669440:intron 35.0%
TTTATCGCCAAACTTGCATA+AGG + chr4_4:11155905-11155924 None:intergenic 35.0%
AAGGAAGAATCTCCTAGATT+TGG - chr4_4:11156016-11156035 Msa0669440:intron 35.0%
CTTTCACTATTGCCAAATCT+AGG + chr4_4:11156031-11156050 None:intergenic 35.0%
AGATTTGGCAATAGTGAAAG+AGG - chr4_4:11156031-11156050 Msa0669440:intron 35.0%
GATTTGGCAATAGTGAAAGA+GGG - chr4_4:11156032-11156051 Msa0669440:intron 35.0%
ATTTGGCAATAGTGAAAGAG+GGG - chr4_4:11156033-11156052 Msa0669440:intron 35.0%
GAAACATAGAATGGCACTTA+CGG + chr4_4:11156181-11156200 None:intergenic 35.0%
ATTTCGATTAAGCAATGCCT+TGG - chr4_4:11156205-11156224 Msa0669440:intron 35.0%
AAACAGCATCATGCCTTTAT+TGG + chr4_4:11156245-11156264 None:intergenic 35.0%
!!! GTTTCAATTTTTGGCAATGG+AGG + chr4_4:11156268-11156287 None:intergenic 35.0%
ACCAACAAAATGGATATTCG+AGG - chr4_4:11156432-11156451 Msa0669440:CDS 35.0%
! TCCTCGAATATCCATTTTGT+TGG + chr4_4:11156436-11156455 None:intergenic 35.0%
CAGTTGCATTACATCTATCA+AGG + chr4_4:11156647-11156666 None:intergenic 35.0%
TATCGAGATAAAGCTTTACC+TGG + chr4_4:11156815-11156834 None:intergenic 35.0%
GGTTCATAAATGCAAGAGTA+AGG - chr4_4:11156905-11156924 Msa0669440:CDS 35.0%
TAAATGCAAGAGTAAGGCTT+TGG - chr4_4:11156911-11156930 Msa0669440:CDS 35.0%
ATGTGAATTTCTTCCACCAT+TGG + chr4_4:11156940-11156959 None:intergenic 35.0%
!! GAAACTAGAGAAGTATCTGA+AGG + chr4_4:11157045-11157064 None:intergenic 35.0%
AACTTATCTGTCGATGTAGA+CGG + chr4_4:11157075-11157094 None:intergenic 35.0%
! AGTCTACCTTTTCAACATGT+AGG - chr4_4:11157189-11157208 Msa0669440:exon 35.0%
! AGTAATGTGTCATTGACACT+AGG - chr4_4:11157279-11157298 Msa0669440:five_prime_UTR 35.0%
TTTGGAAGAGATGTAATTGG+TGG - chr4_4:11157435-11157454 Msa0669440:five_prime_UTR 35.0%
TTGGAAGAGATGTAATTGGT+GGG - chr4_4:11157436-11157455 Msa0669440:five_prime_UTR 35.0%
! GGATAGTTACTGGTTATAGC+CGG + chr4_4:11151723-11151742 None:intergenic 40.0%
GGCTATAACCAGTAACTATC+CGG - chr4_4:11151722-11151741 Msa0669440:three_prime_UTR 40.0%
TATAGTGACCGGATAGTTAC+TGG + chr4_4:11151733-11151752 None:intergenic 40.0%
AGTAGGGTTTCTATAGTGAC+CGG + chr4_4:11151744-11151763 None:intergenic 40.0%
ATGAAGCTGGATTGAAGTGA+TGG + chr4_4:11151997-11152016 None:intergenic 40.0%
CTTTGTAGGTTCAACTCCAA+AGG + chr4_4:11152620-11152639 None:intergenic 40.0%
GGATCTATGATTTATGGTGG+TGG - chr4_4:11152644-11152663 Msa0669440:intron 40.0%
!! TCTATGATTTATGGTGGTGG+AGG - chr4_4:11152647-11152666 Msa0669440:intron 40.0%
!! GTTGGAAATCTTGGTGTTTG+TGG - chr4_4:11152806-11152825 Msa0669440:intron 40.0%
! GAAGAAGATCCATTTGGTGA+TGG - chr4_4:11152893-11152912 Msa0669440:intron 40.0%
TTATTGCGACCATCACCAAA+TGG + chr4_4:11152905-11152924 None:intergenic 40.0%
GTTAGTGGTAGGCTAACATA+AGG - chr4_4:11153357-11153376 Msa0669440:CDS 40.0%
!! TATATTGTGATGGATGGCCT+CGG - chr4_4:11153531-11153550 Msa0669440:intron 40.0%
GACTATGTCACCCAATTTGT+AGG - chr4_4:11153654-11153673 Msa0669440:intron 40.0%
!!! GGAACTTGTTAAGGTGCTTT+TGG + chr4_4:11154279-11154298 None:intergenic 40.0%
CACCTTAACAAGTTCCTTCA+AGG - chr4_4:11154283-11154302 Msa0669440:intron 40.0%
! GTTATGTATGTCTTGGCTTG+TGG - chr4_4:11154684-11154703 Msa0669440:intron 40.0%
! AAGAAAAAGCACATGCAGCA+TGG + chr4_4:11154935-11154954 None:intergenic 40.0%
!!! TGCTGCATGTGCTTTTTCTT+CGG - chr4_4:11154935-11154954 Msa0669440:intron 40.0%
! ACGAGGGTTTAAGGCTAAAA+TGG + chr4_4:11155113-11155132 None:intergenic 40.0%
AAGTTTCACACGAGGGTTTA+AGG + chr4_4:11155122-11155141 None:intergenic 40.0%
AACCAATGCTCTTAGGACAT+TGG - chr4_4:11155362-11155381 Msa0669440:intron 40.0%
! AACCAATGTCCTAAGAGCAT+TGG + chr4_4:11155367-11155386 None:intergenic 40.0%
AGAACATAGTTCGTCTCAGA+GGG + chr4_4:11155671-11155690 None:intergenic 40.0%
TAGAACATAGTTCGTCTCAG+AGG + chr4_4:11155672-11155691 None:intergenic 40.0%
TGTTTGTGTCAGTGCTTCAT+AGG - chr4_4:11155715-11155734 Msa0669440:intron 40.0%
AACAGGTTTATAAGCGGTAC+AGG - chr4_4:11155810-11155829 Msa0669440:intron 40.0%
ATCTAGGAGATTCTTCCTTC+CGG + chr4_4:11156015-11156034 None:intergenic 40.0%
TTTGGCAATAGTGAAAGAGG+GGG - chr4_4:11156034-11156053 Msa0669440:intron 40.0%
TAGTTCTTGAATGTGTACGG+AGG - chr4_4:11156324-11156343 Msa0669440:intron 40.0%
AGTTCTTGAATGTGTACGGA+GGG - chr4_4:11156325-11156344 Msa0669440:intron 40.0%
TTGTGTATCAGGTGTCTAAC+TGG - chr4_4:11156884-11156903 Msa0669440:CDS 40.0%
!! AGTAAGGCTTTGGAAACCAA+TGG - chr4_4:11156921-11156940 Msa0669440:CDS 40.0%
ATTTACGGCACGTTTGTAAG+TGG + chr4_4:11157106-11157125 None:intergenic 40.0%
TGACTCCTAACTGGTATGTT+AGG + chr4_4:11157135-11157154 None:intergenic 40.0%
AACATACCAGTTAGGAGTCA+AGG - chr4_4:11157135-11157154 Msa0669440:CDS 40.0%
CCAACACCTACATGTTGAAA+AGG + chr4_4:11157198-11157217 None:intergenic 40.0%
! CCTTTTCAACATGTAGGTGT+TGG - chr4_4:11157195-11157214 Msa0669440:exon 40.0%
! GGTGTTGGAATGAACATTGT+TGG - chr4_4:11157210-11157229 Msa0669440:five_prime_UTR 40.0%
! GGAATGAACATTGTTGGTAG+TGG - chr4_4:11157216-11157235 Msa0669440:five_prime_UTR 40.0%
!! GTTGGTAGTGGAAGCAATAA+TGG - chr4_4:11157228-11157247 Msa0669440:five_prime_UTR 40.0%
TGAGCTGCACTTAAAGGAAA+TGG + chr4_4:11157339-11157358 None:intergenic 40.0%
AATCGTTGAGCTGCACTTAA+AGG + chr4_4:11157345-11157364 None:intergenic 40.0%
TTAAGTGCAGCTCAACGATT+TGG - chr4_4:11157345-11157364 Msa0669440:five_prime_UTR 40.0%
GGCCTTGAAACCAATAATGA+AGG - chr4_4:11157372-11157391 Msa0669440:five_prime_UTR 40.0%
!! GCTAGTGATGAGGGTTTTGA+AGG - chr4_4:11152122-11152141 Msa0669440:CDS 45.0%
!! GTGATTCAAGGGTTGGTTGA+AGG - chr4_4:11152671-11152690 Msa0669440:intron 45.0%
!! ATTCAAGGGTTGGTTGAAGG+AGG - chr4_4:11152674-11152693 Msa0669440:intron 45.0%
!! TCTTGGTGTTTGTGGTGAGA+AGG - chr4_4:11152814-11152833 Msa0669440:intron 45.0%
AAAGCCAATTGAGTTCACCG+AGG + chr4_4:11153551-11153570 None:intergenic 45.0%
TTGCTTATAGTTGTGACCGG+AGG - chr4_4:11154429-11154448 Msa0669440:intron 45.0%
TGCTTATAGTTGTGACCGGA+GGG - chr4_4:11154430-11154449 Msa0669440:intron 45.0%
TTGCTTACATGTACACCCTC+CGG + chr4_4:11154448-11154467 None:intergenic 45.0%
!! CTTGGCTTGTGGAGTTTATC+TGG - chr4_4:11154695-11154714 Msa0669440:intron 45.0%
!!! GCATGTGCTTTTTCTTCGGT+TGG - chr4_4:11154939-11154958 Msa0669440:intron 45.0%
AGCTAACTATCCCGTGATCT+TGG - chr4_4:11155236-11155255 Msa0669440:intron 45.0%
GCTAACTATCCCGTGATCTT+GGG - chr4_4:11155237-11155256 Msa0669440:intron 45.0%
CTAACTATCCCGTGATCTTG+GGG - chr4_4:11155238-11155257 Msa0669440:intron 45.0%
TAACCAATGCCCCAAGATCA+CGG + chr4_4:11155250-11155269 None:intergenic 45.0%
GAACATAGTTCGTCTCAGAG+GGG + chr4_4:11155670-11155689 None:intergenic 45.0%
TACTTATTATCCGTCGGTCC+TGG - chr4_4:11155692-11155711 Msa0669440:intron 45.0%
TTACGACCGATTGCATCTGT+TGG + chr4_4:11155844-11155863 None:intergenic 45.0%
CATAAGGAGCTGCATTGTTG+AGG + chr4_4:11155889-11155908 None:intergenic 45.0%
TGCAGCTCCTTATGCAAGTT+TGG - chr4_4:11155895-11155914 Msa0669440:intron 45.0%
! CGCATTTTCACACAAGCAAC+CGG - chr4_4:11155993-11156012 Msa0669440:intron 45.0%
! TTTTCACACAAGCAACCGGA+AGG - chr4_4:11155997-11156016 Msa0669440:intron 45.0%
TAACCTGACCTATGGCTGTA+AGG + chr4_4:11156061-11156080 None:intergenic 45.0%
GCTCAAGATAACCTGACCTA+TGG + chr4_4:11156069-11156088 None:intergenic 45.0%
TTGAGCAGCAACAACCTGTA+TGG - chr4_4:11156083-11156102 Msa0669440:intron 45.0%
CTGTGACTGTTCTTAGAGCA+TGG - chr4_4:11156134-11156153 Msa0669440:intron 45.0%
CACAATGCTCGACACATTCA+AGG - chr4_4:11156558-11156577 Msa0669440:CDS 45.0%
GATCATGGTTGTGTTGCGTT+AGG - chr4_4:11156619-11156638 Msa0669440:CDS 45.0%
ATCAGTAGGATAGCTGCACA+AGG + chr4_4:11156748-11156767 None:intergenic 45.0%
!! AAGGCTTTGGAAACCAATGG+TGG - chr4_4:11156924-11156943 Msa0669440:CDS 45.0%
! TGTCGATGTAGACGGATTCT+CGG + chr4_4:11157067-11157086 None:intergenic 45.0%
TGTTGTCCTTGACTCCTAAC+TGG + chr4_4:11157144-11157163 None:intergenic 45.0%
!!! TATTTTTTTTATTCTTTAAA+TGG - chr4_4:11154249-11154268 Msa0669440:intron 5.0%
! GTGGTGGAGGTGTGATTCAA+GGG - chr4_4:11152660-11152679 Msa0669440:intron 50.0%
! TGGAGGTGTGATTCAAGGGT+TGG - chr4_4:11152664-11152683 Msa0669440:intron 50.0%
GGGGGTTCAGTTCCATTTAC+TGG - chr4_4:11152713-11152732 Msa0669440:intron 50.0%
ATGGCCTCGGTGAACTCAAT+TGG - chr4_4:11153544-11153563 Msa0669440:intron 50.0%
! GACTAGAGGGTGTACCTTGA+AGG + chr4_4:11154300-11154319 None:intergenic 50.0%
AACCAATGCCCCAAGATCAC+GGG + chr4_4:11155249-11155268 None:intergenic 50.0%
!! GAAGCACTGACACAAACACC+AGG + chr4_4:11155713-11155732 None:intergenic 50.0%
AAGAACAGTCACAGCACGCT+CGG + chr4_4:11156128-11156147 None:intergenic 50.0%
AAATGCAGTCGCAATGACCG+TGG - chr4_4:11156668-11156687 Msa0669440:CDS 50.0%
!! GCAGCTCAACGATTTGGTCT+TGG - chr4_4:11157351-11157370 Msa0669440:five_prime_UTR 50.0%
!! GGTGGTGGAGGTGTGATTCA+AGG - chr4_4:11152659-11152678 Msa0669440:intron 55.0%
!! CAAGGGTTGGTTGAAGGAGG+AGG - chr4_4:11152677-11152696 Msa0669440:intron 55.0%
TTGGTTGAAGGAGGAGGAGG+AGG - chr4_4:11152683-11152702 Msa0669440:intron 55.0%
ATCCCGTGATCTTGGGGCAT+TGG - chr4_4:11155244-11155263 Msa0669440:intron 55.0%
GACACAAACACCAGGACCGA+CGG + chr4_4:11155705-11155724 None:intergenic 55.0%
AGGAGCTGCATTGTTGAGGC+CGG + chr4_4:11155885-11155904 None:intergenic 55.0%
GGACCTTACAGCCATAGGTC+AGG - chr4_4:11156055-11156074 Msa0669440:intron 55.0%
!! CCTCTTTGAGGTCGCCATAC+AGG + chr4_4:11156100-11156119 None:intergenic 55.0%
CCTGTATGGCGACCTCAAAG+AGG - chr4_4:11156097-11156116 Msa0669440:intron 55.0%
AGAACAGTCACAGCACGCTC+GGG + chr4_4:11156127-11156146 None:intergenic 55.0%
!! GGGTTGGTTGAAGGAGGAGG+AGG - chr4_4:11152680-11152699 Msa0669440:intron 60.0%
GTTGAAGGAGGAGGAGGAGG+AGG - chr4_4:11152686-11152705 Msa0669440:intron 60.0%
GAGGAGGAGGAGGAGGAAGT+GGG - chr4_4:11152693-11152712 Msa0669440:intron 60.0%
AGGAGGAGGAGGAGGAAGTG+GGG - chr4_4:11152694-11152713 Msa0669440:intron 60.0%
GAGGGGGACCTTACAGCCAT+AGG - chr4_4:11156050-11156069 Msa0669440:intron 60.0%
GAACAGTCACAGCACGCTCG+GGG + chr4_4:11156126-11156145 None:intergenic 60.0%
! AACTGGTCTGTCGCGTAGCC+AGG - chr4_4:11156794-11156813 Msa0669440:CDS 60.0%
GGAGGAGGAGGAGGAGGAAG+TGG - chr4_4:11152692-11152711 Msa0669440:intron 65.0%
GGAGGAGGAGGAGGAAGTGG+GGG - chr4_4:11152695-11152714 Msa0669440:intron 65.0%
CGCTCGGGGAGTCCTCTTTG+AGG + chr4_4:11156112-11156131 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 11151692 11157622 11151692 ID=Msa0669440;Name=Msa0669440
chr4_4 mRNA 11151692 11157622 11151692 ID=Msa0669440-mRNA-1;Parent=Msa0669440;Name=Msa0669440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=427|1|1|1|1|1|4|137|616
chr4_4 exon 11151692 11152419 11151692 ID=Msa0669440-mRNA-1:exon:3348;Parent=Msa0669440-mRNA-1
chr4_4 exon 11152499 11152559 11152499 ID=Msa0669440-mRNA-1:exon:3347;Parent=Msa0669440-mRNA-1
chr4_4 exon 11153135 11153499 11153135 ID=Msa0669440-mRNA-1:exon:3346;Parent=Msa0669440-mRNA-1
chr4_4 exon 11156362 11157622 11156362 ID=Msa0669440-mRNA-1:exon:3345;Parent=Msa0669440-mRNA-1
chr4_4 five_prime_UTR 11157196 11157622 11157196 ID=Msa0669440-mRNA-1:five_prime_utr;Parent=Msa0669440-mRNA-1
chr4_4 CDS 11156362 11157195 11156362 ID=Msa0669440-mRNA-1:cds;Parent=Msa0669440-mRNA-1
chr4_4 CDS 11153135 11153499 11153135 ID=Msa0669440-mRNA-1:cds;Parent=Msa0669440-mRNA-1
chr4_4 CDS 11152499 11152559 11152499 ID=Msa0669440-mRNA-1:cds;Parent=Msa0669440-mRNA-1
chr4_4 CDS 11151829 11152419 11151829 ID=Msa0669440-mRNA-1:cds;Parent=Msa0669440-mRNA-1
chr4_4 three_prime_UTR 11151692 11151828 11151692 ID=Msa0669440-mRNA-1:three_prime_utr;Parent=Msa0669440-mRNA-1
Gene Sequence

>Msa0669440

ATGGCTAGTGATGAGGGTTTTGAAGGTTATCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAATCAACAATCTCATGAACCTTTACTTCCTTTCTATGATTCTTCTTCTTTCATTACTAATTTTACTAACCAACAAGGTTTGAAGCATAATTCATGTTCTTCTTCTAATTCTATGAAGGATTTAGAGTGTTCTAATTTGATGATGCGTTTTTCAAGAGAAGATCAAGGAAAAAGGGTCATGAATATGAATATTTCTTCTTCTAACAACTCTTGTTCAGTTTCTCATCATCCTTATTTTGAGACTTTGAATAATAACAATCAAGGAAATAATAATAACCCTTTTCTTTATCAAGCACAAAACATTCAAAATCTTAGACAATTTGATGAACAACATAGTAGTACAAGTACTATGATGTTGAATAATCATGAGCCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAACCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTGTGATTCAAGGGTTGGTTGAAGGAGGAGGAGGAGGAGGAAGTGGGGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTGAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTGTTAGAAGAGATGTGTGATGTTGGAAATCTTGGTGTTTGTGGTGAGAAGGTTGTTGTTGTTGCTGATTCTTCTTTGATGATGGAATCTCCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGGTCGCAATAAATCAAGATTGTTGACTATGCTTGATGAGGTTTATAAGCGGTACAGGCAATACTACCAACAGATGCAATCGGTCGTAACATCATTTGAGTATGTTTCCGGCCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCTATGTCCAAACATTTTAGATGCTTGAAGAAGGCAATTACTGACCAACTACAGTTCAATAATAAGGCGCATTTTCACACAAGCAACCGGAAGGAAGAATCTCCTAGATTTGGCAATAGTGAAAGAGGGGGACCTTACAGCCATAGGTCAGGTTATCTTGAGCAGCAACAACCTGTATGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCATGGCTTTTTGAACACTTTCTGCATCCCTATCCTACTGATACAGACAAAATAATGTTGGCTAAACAAACTGGTCTGTCGCGTAGCCAGGTGTCTAACTGGTTCATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATTCACATGTTAGAAACAAGGCAAACTCCAAAAGATTCACAACAAAATGAAGAAAATTGTCGGAACAAATCAAGTGATCATCATCATTTGCCTTCAGATACTTCTCTAGTTTCCGAGAATCCGTCTACATCGACAGATAAGTTTCATGATGCCACTTACAAACGTGCCGTAAATGAAATTCCTAACATACCAGTTAGGAGTCAAGGACAACATCATCAACAACAACAACAACAAATGAGTCTACCTTTTCAACATGTAGGTGTTGGAATGAACATTGTTGGTAGTGGAAGCAATAATGGCAATCATAGTAATAATAATAATAATAATAGTAATGTGTCATTGACACTAGGACTTTATCAAAATCATGGGATTGGTTTAGCTGAACCATTTCCTTTAAGTGCAGCTCAACGATTTGGTCTTGGCCTTGAAACCAATAATGAAGGTAATTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGAAGAGATGTAATTGGTGGGCAAATGTTTCATGACTTTGTAGGATGA

Protein sequence

>Msa0669440

MASDEGFEGYHVPQQSRRDKLRVVVAQNQQSHEPLLPFYDSSSFITNFTNQQGLKHNSCSSSNSMKDLECSNLMMRFSREDQGKRVMNMNISSSNNSCSVSHHPYFETLNNNNQGNNNNPFLYQAQNIQNLRQFDEQHSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGVIQGLVEGGGGGGSGGSVPFTGYASVLKDSRFLKPAQELLEEMCDVGNLGVCGEKVVVVADSSLMMESPLERLSEEDPFGDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQFNNKAHFHTSNRKEESPRFGNSERGGPYSHRSGYLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTPKDSQQNEENCRNKSSDHHHLPSDTSLVSENPSTSTDKFHDATYKRAVNEIPNIPVRSQGQHHQQQQQQMSLPFQHVGVGMNIVGSGSNNGNHSNNNNNNSNVSLTLGLYQNHGIGLAEPFPLSAAQRFGLGLETNNEGNYVMSGFESQNRHFGRDVIGGQMFHDFVG*