Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088830 | sp|Q8S9L6|CRK29_ARATH | 36.719 | 256 | 152 | 6 | 13 | 265 | 13 | 261 | 5.08e-41 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088830 | A0A396JUY1 | 90.566 | 265 | 25 | 0 | 1 | 265 | 22 | 286 | 1.36e-180 | 507 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0041270 | Msa0088830 | 0.945401 | 3.271673e-104 | -8.615850e-47 |
Msa0088830 | Msa0130710 | 0.833159 | 6.258361e-56 | -8.615850e-47 |
Msa0088830 | Msa0135740 | 0.846431 | 2.182079e-59 | -8.615850e-47 |
Msa0088830 | Msa0180390 | 0.832791 | 7.728660e-56 | -8.615850e-47 |
Msa0088830 | Msa0381950 | 0.806959 | 6.385287e-50 | -8.615850e-47 |
Msa0088830 | Msa1019220 | 0.800125 | 1.668913e-48 | -8.615850e-47 |
Msa0088830 | Msa1040330 | 0.802699 | 4.955136e-49 | -8.615850e-47 |
Msa0088830 | Msa1127940 | 0.803615 | 3.203856e-49 | -8.615850e-47 |
Msa0088830 | Msa1150860 | 0.804431 | 2.167055e-49 | -8.615850e-47 |
Msa0088830 | Msa1165860 | 0.807007 | 6.235813e-50 | -8.615850e-47 |
Msa0088830 | Msa1445780 | 0.805816 | 1.111977e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088830 | MtrunA17_Chr1g0206601 | 90.566 | 265 | 25 | 0 | 1 | 265 | 22 | 286 | 0.0 | 507 |
Msa0088830 | MtrunA17_Chr1g0206581 | 81.022 | 274 | 42 | 2 | 1 | 265 | 18 | 290 | 6.19e-162 | 450 |
Msa0088830 | MtrunA17_Chr1g0206651 | 72.266 | 256 | 65 | 4 | 1 | 255 | 1 | 251 | 2.08e-133 | 377 |
Msa0088830 | MtrunA17_Chr1g0206571 | 62.343 | 239 | 90 | 0 | 20 | 258 | 23 | 261 | 1.31e-108 | 316 |
Msa0088830 | MtrunA17_Chr1g0154361 | 62.151 | 251 | 90 | 3 | 10 | 255 | 3 | 253 | 2.53e-106 | 310 |
Msa0088830 | MtrunA17_Chr1g0154341 | 57.034 | 263 | 106 | 4 | 10 | 265 | 3 | 265 | 5.55e-101 | 296 |
Msa0088830 | MtrunA17_Chr1g0154371 | 55.769 | 260 | 108 | 4 | 1 | 254 | 8 | 266 | 4.98e-93 | 288 |
Msa0088830 | MtrunA17_Chr1g0154311 | 54.435 | 248 | 109 | 2 | 14 | 258 | 10 | 256 | 6.46e-92 | 285 |
Msa0088830 | MtrunA17_Chr1g0154351 | 56.349 | 252 | 105 | 3 | 10 | 256 | 3 | 254 | 1.99e-91 | 283 |
Msa0088830 | MtrunA17_Chr1g0154321 | 55.294 | 255 | 105 | 5 | 10 | 255 | 3 | 257 | 2.65e-87 | 275 |
Msa0088830 | MtrunA17_Chr1g0206531 | 51.373 | 255 | 112 | 6 | 4 | 256 | 8 | 252 | 2.49e-79 | 252 |
Msa0088830 | MtrunA17_Chr5g0428591 | 49.187 | 246 | 117 | 5 | 10 | 255 | 8 | 245 | 4.11e-73 | 224 |
Msa0088830 | MtrunA17_Chr1g0206461 | 48.235 | 255 | 121 | 5 | 2 | 256 | 6 | 249 | 1.00e-71 | 231 |
Msa0088830 | MtrunA17_Chr5g0428571 | 51.364 | 220 | 103 | 3 | 40 | 259 | 35 | 250 | 4.07e-67 | 217 |
Msa0088830 | MtrunA17_Chr5g0428531 | 46.063 | 254 | 114 | 7 | 10 | 254 | 8 | 247 | 1.94e-65 | 206 |
Msa0088830 | MtrunA17_Chr1g0206451 | 49.219 | 256 | 121 | 5 | 2 | 256 | 40 | 287 | 2.09e-63 | 210 |
Msa0088830 | MtrunA17_Chr1g0206521 | 47.843 | 255 | 123 | 5 | 2 | 256 | 648 | 892 | 9.27e-62 | 210 |
Msa0088830 | MtrunA17_Chr1g0206521 | 47.718 | 241 | 117 | 5 | 16 | 256 | 19 | 250 | 1.22e-59 | 204 |
Msa0088830 | MtrunA17_Chr1g0206561 | 40.873 | 252 | 140 | 4 | 11 | 262 | 4 | 246 | 6.25e-52 | 179 |
Msa0088830 | MtrunA17_Chr5g0426941 | 41.288 | 264 | 134 | 8 | 4 | 262 | 1 | 248 | 5.48e-51 | 176 |
Msa0088830 | MtrunA17_Chr1g0206381 | 37.097 | 248 | 142 | 6 | 24 | 263 | 19 | 260 | 4.56e-44 | 152 |
Msa0088830 | MtrunA17_Chr1g0206401 | 43.256 | 215 | 107 | 8 | 43 | 248 | 33 | 241 | 2.46e-43 | 155 |
Msa0088830 | MtrunA17_Chr2g0323011 | 32.800 | 250 | 149 | 9 | 1 | 248 | 7 | 239 | 1.25e-34 | 125 |
Msa0088830 | MtrunA17_Chr1g0205771 | 33.191 | 235 | 146 | 6 | 24 | 255 | 33 | 259 | 4.22e-32 | 124 |
Msa0088830 | MtrunA17_Chr1g0206331 | 34.101 | 217 | 134 | 7 | 44 | 255 | 41 | 253 | 1.56e-31 | 122 |
Msa0088830 | MtrunA17_Chr5g0428601 | 48.413 | 126 | 62 | 3 | 130 | 255 | 1 | 123 | 2.29e-31 | 119 |
Msa0088830 | MtrunA17_Chr6g0475001 | 33.333 | 252 | 154 | 8 | 11 | 255 | 7 | 251 | 4.40e-30 | 118 |
Msa0088830 | MtrunA17_Chr6g0475001 | 34.184 | 196 | 113 | 8 | 68 | 254 | 301 | 489 | 5.45e-18 | 83.6 |
Msa0088830 | MtrunA17_Chr7g0234231 | 29.435 | 248 | 166 | 5 | 9 | 256 | 1 | 239 | 4.86e-30 | 113 |
Msa0088830 | MtrunA17_Chr6g0475121 | 32.046 | 259 | 162 | 7 | 9 | 261 | 7 | 257 | 5.34e-29 | 115 |
Msa0088830 | MtrunA17_Chr6g0475121 | 28.992 | 238 | 150 | 10 | 21 | 254 | 268 | 490 | 2.09e-18 | 84.3 |
Msa0088830 | MtrunA17_Chr6g0474901 | 31.308 | 214 | 138 | 5 | 47 | 255 | 35 | 244 | 4.23e-28 | 113 |
Msa0088830 | MtrunA17_Chr6g0474901 | 30.864 | 243 | 142 | 11 | 23 | 254 | 256 | 483 | 4.45e-19 | 86.7 |
Msa0088830 | MtrunA17_Chr6g0474971 | 32.710 | 214 | 135 | 5 | 47 | 255 | 35 | 244 | 1.04e-27 | 108 |
Msa0088830 | MtrunA17_Chr5g0394001 | 31.707 | 246 | 156 | 8 | 13 | 254 | 12 | 249 | 1.11e-27 | 111 |
Msa0088830 | MtrunA17_Chr1g0206361 | 33.184 | 223 | 138 | 7 | 40 | 258 | 42 | 257 | 1.40e-27 | 111 |
Msa0088830 | MtrunA17_Chr1g0206201 | 32.271 | 251 | 156 | 9 | 4 | 248 | 6 | 248 | 2.19e-27 | 107 |
Msa0088830 | MtrunA17_Chr8g0347571 | 31.200 | 250 | 154 | 8 | 9 | 254 | 7 | 242 | 3.35e-26 | 107 |
Msa0088830 | MtrunA17_Chr8g0347571 | 28.049 | 246 | 146 | 12 | 23 | 255 | 261 | 488 | 8.25e-18 | 82.8 |
Msa0088830 | MtrunA17_Chr6g0474811 | 31.203 | 266 | 155 | 10 | 4 | 255 | 1 | 252 | 1.01e-25 | 106 |
Msa0088830 | MtrunA17_Chr6g0474811 | 32.500 | 200 | 122 | 7 | 68 | 259 | 303 | 497 | 3.80e-20 | 89.7 |
Msa0088830 | MtrunA17_Chr6g0475201 | 29.924 | 264 | 174 | 6 | 1 | 261 | 1 | 256 | 1.39e-25 | 105 |
Msa0088830 | MtrunA17_Chr6g0475201 | 35.714 | 168 | 101 | 6 | 89 | 254 | 328 | 490 | 3.54e-23 | 98.6 |
Msa0088830 | MtrunA17_Chr6g0475111 | 29.317 | 249 | 167 | 6 | 9 | 254 | 10 | 252 | 2.89e-25 | 104 |
Msa0088830 | MtrunA17_Chr6g0475111 | 30.058 | 173 | 108 | 7 | 89 | 255 | 337 | 502 | 5.91e-17 | 80.5 |
Msa0088830 | MtrunA17_Chr1g0206351 | 29.437 | 231 | 153 | 5 | 28 | 255 | 31 | 254 | 4.21e-25 | 104 |
Msa0088830 | MtrunA17_Chr6g0474871 | 30.677 | 251 | 159 | 8 | 12 | 255 | 7 | 249 | 7.43e-25 | 103 |
Msa0088830 | MtrunA17_Chr6g0474871 | 31.841 | 201 | 122 | 8 | 74 | 264 | 304 | 499 | 5.18e-19 | 86.7 |
Msa0088830 | MtrunA17_Chr2g0322981 | 29.675 | 246 | 153 | 8 | 6 | 248 | 11 | 239 | 1.26e-24 | 98.6 |
Msa0088830 | MtrunA17_Chr5g0393981 | 31.193 | 218 | 129 | 9 | 45 | 254 | 113 | 317 | 1.36e-24 | 102 |
Msa0088830 | MtrunA17_Chr5g0394021 | 33.333 | 183 | 117 | 3 | 72 | 254 | 70 | 247 | 3.82e-24 | 101 |
Msa0088830 | MtrunA17_Chr1g0206231 | 32.536 | 209 | 131 | 7 | 51 | 255 | 52 | 254 | 5.91e-24 | 100 |
Msa0088830 | MtrunA17_Chr3g0081001 | 26.966 | 267 | 176 | 6 | 3 | 265 | 5 | 256 | 7.53e-24 | 100 |
Msa0088830 | MtrunA17_Chr1g0206291 | 30.040 | 253 | 159 | 9 | 11 | 255 | 23 | 265 | 1.82e-23 | 99.0 |
Msa0088830 | MtrunA17_Chr6g0475091 | 31.336 | 217 | 140 | 5 | 44 | 255 | 48 | 260 | 4.82e-23 | 98.2 |
Msa0088830 | MtrunA17_Chr6g0475091 | 33.889 | 180 | 112 | 6 | 82 | 259 | 330 | 504 | 5.58e-18 | 83.6 |
Msa0088830 | MtrunA17_Chr6g0474861 | 32.530 | 249 | 151 | 11 | 11 | 254 | 7 | 243 | 5.57e-23 | 97.8 |
Msa0088830 | MtrunA17_Chr3g0081031 | 32.377 | 244 | 151 | 6 | 9 | 249 | 22 | 254 | 5.90e-23 | 97.8 |
Msa0088830 | MtrunA17_Chr3g0081051 | 32.075 | 212 | 135 | 5 | 41 | 249 | 31 | 236 | 8.47e-23 | 94.0 |
Msa0088830 | MtrunA17_Chr3g0081011 | 27.727 | 220 | 145 | 6 | 50 | 265 | 46 | 255 | 1.01e-22 | 97.1 |
Msa0088830 | MtrunA17_Chr5g0394011 | 30.556 | 216 | 139 | 7 | 45 | 254 | 41 | 251 | 1.09e-22 | 97.1 |
Msa0088830 | MtrunA17_Chr8g0354271 | 27.027 | 259 | 178 | 7 | 9 | 264 | 8 | 258 | 1.79e-21 | 93.6 |
Msa0088830 | MtrunA17_Chr8g0354421 | 30.350 | 257 | 153 | 13 | 9 | 255 | 30 | 270 | 2.83e-20 | 90.1 |
Msa0088830 | MtrunA17_Chr8g0354441 | 27.778 | 270 | 166 | 12 | 9 | 265 | 13 | 266 | 3.06e-20 | 90.1 |
Msa0088830 | MtrunA17_Chr8g0354351 | 25.769 | 260 | 177 | 8 | 9 | 265 | 7 | 253 | 4.63e-19 | 86.7 |
Msa0088830 | MtrunA17_Chr8g0354411 | 28.497 | 193 | 128 | 6 | 75 | 265 | 74 | 258 | 9.73e-19 | 84.0 |
Msa0088830 | MtrunA17_Chr8g0354341 | 32.240 | 183 | 113 | 6 | 75 | 255 | 73 | 246 | 7.60e-18 | 80.9 |
Msa0088830 | MtrunA17_Chr1g0206251 | 34.254 | 181 | 107 | 7 | 82 | 254 | 333 | 509 | 2.23e-17 | 81.3 |
Msa0088830 | MtrunA17_Chr1g0206251 | 27.344 | 256 | 168 | 9 | 11 | 256 | 19 | 266 | 5.85e-13 | 68.2 |
Msa0088830 | MtrunA17_Chr3g0119041 | 29.187 | 209 | 127 | 7 | 68 | 259 | 63 | 267 | 7.47e-17 | 80.1 |
Msa0088830 | MtrunA17_Chr1g0206421 | 29.333 | 150 | 95 | 4 | 80 | 220 | 5 | 152 | 1.26e-16 | 79.3 |
Msa0088830 | MtrunA17_Chr2g0280391 | 25.523 | 239 | 166 | 7 | 25 | 262 | 27 | 254 | 6.03e-16 | 75.9 |
Msa0088830 | MtrunA17_Chr2g0280361 | 26.778 | 239 | 158 | 7 | 25 | 262 | 27 | 249 | 6.54e-16 | 75.5 |
Msa0088830 | MtrunA17_Chr1g0206411 | 53.448 | 58 | 27 | 0 | 65 | 122 | 4 | 61 | 6.31e-15 | 68.6 |
Msa0088830 | MtrunA17_Chr8g0354431 | 24.324 | 259 | 186 | 6 | 9 | 265 | 8 | 258 | 3.84e-13 | 68.9 |
Msa0088830 | MtrunA17_Chr8g0354281 | 22.368 | 228 | 163 | 8 | 32 | 255 | 30 | 247 | 2.89e-12 | 66.2 |
Msa0088830 | MtrunA17_Chr2g0280381 | 25.359 | 209 | 144 | 5 | 55 | 262 | 51 | 248 | 3.86e-11 | 62.0 |
Msa0088830 | MtrunA17_Chr1g0206541 | 45.455 | 55 | 29 | 1 | 208 | 262 | 19 | 72 | 7.56e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088830 | AT4G21410.2 | 36.719 | 256 | 152 | 6 | 13 | 265 | 13 | 261 | 1.57e-42 | 152 |
Msa0088830 | AT4G21410.3 | 36.719 | 256 | 152 | 6 | 13 | 265 | 13 | 261 | 5.16e-42 | 152 |
Msa0088830 | AT4G38830.1 | 37.273 | 220 | 132 | 5 | 39 | 256 | 32 | 247 | 5.15e-37 | 138 |
Msa0088830 | AT4G05200.1 | 36.145 | 249 | 139 | 9 | 11 | 254 | 15 | 248 | 1.15e-36 | 137 |
Msa0088830 | AT4G05200.2 | 36.145 | 249 | 139 | 9 | 11 | 254 | 33 | 266 | 1.15e-36 | 137 |
Msa0088830 | AT4G21400.3 | 34.667 | 225 | 142 | 4 | 43 | 265 | 42 | 263 | 4.70e-36 | 134 |
Msa0088830 | AT4G21400.6 | 34.667 | 225 | 142 | 4 | 43 | 265 | 42 | 263 | 5.93e-36 | 134 |
Msa0088830 | AT4G21400.4 | 34.667 | 225 | 142 | 4 | 43 | 265 | 42 | 263 | 5.93e-36 | 134 |
Msa0088830 | AT4G21400.5 | 34.667 | 225 | 142 | 4 | 43 | 265 | 42 | 263 | 5.93e-36 | 134 |
Msa0088830 | AT4G21400.2 | 33.071 | 254 | 163 | 5 | 14 | 265 | 15 | 263 | 1.12e-35 | 134 |
Msa0088830 | AT3G22060.1 | 32.114 | 246 | 159 | 4 | 3 | 248 | 7 | 244 | 1.21e-35 | 128 |
Msa0088830 | AT4G21400.1 | 33.071 | 254 | 163 | 5 | 14 | 265 | 15 | 263 | 1.47e-35 | 134 |
Msa0088830 | AT4G21400.7 | 35.829 | 187 | 116 | 3 | 80 | 265 | 54 | 237 | 4.90e-32 | 124 |
Msa0088830 | AT4G23170.1 | 38.426 | 216 | 118 | 8 | 45 | 254 | 39 | 245 | 6.45e-32 | 119 |
Msa0088830 | AT4G23220.1 | 32.692 | 208 | 138 | 2 | 43 | 248 | 29 | 236 | 3.86e-31 | 122 |
Msa0088830 | AT4G00970.2 | 38.835 | 206 | 114 | 6 | 53 | 254 | 65 | 262 | 3.97e-31 | 121 |
Msa0088830 | AT4G00970.1 | 38.835 | 206 | 114 | 6 | 53 | 254 | 65 | 262 | 6.68e-31 | 121 |
Msa0088830 | AT4G21230.1 | 37.273 | 220 | 117 | 9 | 41 | 254 | 37 | 241 | 6.95e-31 | 121 |
Msa0088830 | AT4G23180.3 | 36.752 | 234 | 132 | 9 | 29 | 258 | 36 | 257 | 1.85e-30 | 119 |
Msa0088830 | AT4G23180.2 | 36.752 | 234 | 132 | 9 | 29 | 258 | 36 | 257 | 3.12e-30 | 119 |
Msa0088830 | AT4G23180.1 | 36.752 | 234 | 132 | 9 | 29 | 258 | 36 | 257 | 3.83e-30 | 119 |
Msa0088830 | AT4G23280.3 | 37.383 | 214 | 122 | 6 | 44 | 254 | 38 | 242 | 4.35e-30 | 119 |
Msa0088830 | AT4G23280.1 | 37.383 | 214 | 122 | 6 | 44 | 254 | 38 | 242 | 4.66e-30 | 119 |
Msa0088830 | AT4G23160.3 | 37.220 | 223 | 127 | 7 | 41 | 258 | 632 | 846 | 5.24e-30 | 119 |
Msa0088830 | AT4G23160.2 | 37.220 | 223 | 127 | 7 | 41 | 258 | 632 | 846 | 5.24e-30 | 119 |
Msa0088830 | AT4G23280.2 | 37.383 | 214 | 122 | 6 | 44 | 254 | 38 | 242 | 5.68e-30 | 118 |
Msa0088830 | AT4G23160.1 | 37.220 | 223 | 127 | 7 | 41 | 258 | 52 | 266 | 7.11e-30 | 118 |
Msa0088830 | AT4G23150.1 | 35.146 | 239 | 142 | 7 | 24 | 258 | 20 | 249 | 1.03e-29 | 117 |
Msa0088830 | AT4G23130.3 | 35.577 | 208 | 123 | 7 | 51 | 255 | 46 | 245 | 7.31e-29 | 115 |
Msa0088830 | AT4G23130.2 | 35.577 | 208 | 123 | 7 | 51 | 255 | 46 | 245 | 1.01e-28 | 115 |
Msa0088830 | AT4G23130.1 | 35.577 | 208 | 123 | 7 | 51 | 255 | 46 | 245 | 1.07e-28 | 115 |
Msa0088830 | AT2G31620.1 | 30.942 | 223 | 141 | 6 | 40 | 256 | 40 | 255 | 3.37e-28 | 108 |
Msa0088830 | AT4G23210.3 | 32.589 | 224 | 130 | 6 | 40 | 248 | 29 | 246 | 3.85e-28 | 113 |
Msa0088830 | AT4G23210.2 | 32.589 | 224 | 130 | 6 | 40 | 248 | 29 | 246 | 4.20e-28 | 112 |
Msa0088830 | AT4G23210.4 | 32.589 | 224 | 130 | 6 | 40 | 248 | 29 | 246 | 4.20e-28 | 112 |
Msa0088830 | AT4G23200.2 | 29.524 | 210 | 142 | 2 | 45 | 248 | 30 | 239 | 4.46e-28 | 112 |
Msa0088830 | AT4G23210.5 | 32.589 | 224 | 130 | 6 | 40 | 248 | 29 | 246 | 5.12e-28 | 112 |
Msa0088830 | AT4G23210.1 | 32.589 | 224 | 130 | 6 | 40 | 248 | 29 | 246 | 5.22e-28 | 112 |
Msa0088830 | AT4G23300.1 | 32.735 | 223 | 129 | 6 | 41 | 248 | 30 | 246 | 6.28e-28 | 112 |
Msa0088830 | AT4G23200.1 | 29.524 | 210 | 142 | 2 | 45 | 248 | 30 | 239 | 7.11e-28 | 112 |
Msa0088830 | AT4G23140.2 | 35.176 | 199 | 115 | 6 | 65 | 258 | 61 | 250 | 5.35e-27 | 110 |
Msa0088830 | AT4G23140.1 | 35.176 | 199 | 115 | 6 | 65 | 258 | 61 | 250 | 5.96e-27 | 110 |
Msa0088830 | AT4G11521.1 | 29.333 | 225 | 146 | 3 | 32 | 248 | 18 | 237 | 2.41e-26 | 103 |
Msa0088830 | AT4G11460.1 | 31.651 | 218 | 134 | 5 | 43 | 248 | 32 | 246 | 6.89e-26 | 107 |
Msa0088830 | AT4G11460.3 | 31.651 | 218 | 134 | 5 | 43 | 248 | 32 | 246 | 7.28e-26 | 106 |
Msa0088830 | AT4G11530.1 | 26.908 | 249 | 162 | 4 | 9 | 248 | 5 | 242 | 2.74e-25 | 105 |
Msa0088830 | AT3G45860.1 | 37.186 | 199 | 109 | 7 | 65 | 258 | 64 | 251 | 3.42e-25 | 104 |
Msa0088830 | AT4G23230.1 | 34.135 | 208 | 124 | 7 | 51 | 254 | 43 | 241 | 2.46e-24 | 102 |
Msa0088830 | AT5G41290.1 | 29.555 | 247 | 155 | 8 | 12 | 249 | 7 | 243 | 2.71e-24 | 99.0 |
Msa0088830 | AT3G21960.1 | 27.490 | 251 | 171 | 6 | 3 | 248 | 11 | 255 | 7.61e-24 | 97.4 |
Msa0088830 | AT4G23270.2 | 32.540 | 252 | 152 | 10 | 7 | 254 | 3 | 240 | 9.14e-24 | 100 |
Msa0088830 | AT4G23270.1 | 32.540 | 252 | 152 | 10 | 7 | 254 | 3 | 240 | 9.14e-24 | 100 |
Msa0088830 | AT4G23190.1 | 31.818 | 220 | 137 | 6 | 39 | 248 | 28 | 244 | 9.49e-24 | 100 |
Msa0088830 | AT4G23270.3 | 32.540 | 252 | 152 | 10 | 7 | 254 | 3 | 240 | 9.79e-24 | 100 |
Msa0088830 | AT4G23190.2 | 32.110 | 218 | 135 | 6 | 41 | 248 | 30 | 244 | 1.49e-23 | 100 |
Msa0088830 | AT4G20640.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT4G20630.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT4G20580.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT4G20600.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT4G20620.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT4G20610.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT4G20590.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 5.31e-23 | 95.1 |
Msa0088830 | AT3G58310.1 | 26.556 | 241 | 171 | 4 | 9 | 248 | 14 | 249 | 5.93e-23 | 94.7 |
Msa0088830 | AT4G20570.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 21 | 263 | 7.22e-23 | 94.7 |
Msa0088830 | AT4G20560.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 21 | 263 | 7.22e-23 | 94.7 |
Msa0088830 | AT4G20540.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 21 | 263 | 7.22e-23 | 94.7 |
Msa0088830 | AT4G20645.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 21 | 263 | 7.22e-23 | 94.7 |
Msa0088830 | AT4G20530.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 21 | 263 | 7.22e-23 | 94.7 |
Msa0088830 | AT4G20550.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 21 | 263 | 7.22e-23 | 94.7 |
Msa0088830 | AT4G20670.1 | 27.711 | 249 | 169 | 5 | 5 | 248 | 7 | 249 | 7.23e-23 | 94.7 |
Msa0088830 | AT1G61750.1 | 30.660 | 212 | 139 | 6 | 43 | 251 | 38 | 244 | 2.27e-22 | 94.7 |
Msa0088830 | AT4G11490.1 | 30.415 | 217 | 143 | 3 | 38 | 248 | 27 | 241 | 2.43e-22 | 96.7 |
Msa0088830 | AT4G21410.1 | 40.580 | 138 | 78 | 3 | 130 | 265 | 1 | 136 | 2.59e-22 | 96.3 |
Msa0088830 | AT4G23240.1 | 29.630 | 216 | 145 | 4 | 43 | 254 | 33 | 245 | 2.92e-22 | 96.3 |
Msa0088830 | AT3G21990.1 | 26.908 | 249 | 171 | 5 | 5 | 248 | 7 | 249 | 4.35e-22 | 92.4 |
Msa0088830 | AT4G23250.1 | 28.448 | 232 | 148 | 6 | 36 | 254 | 30 | 256 | 6.32e-22 | 95.5 |
Msa0088830 | AT4G23250.3 | 28.448 | 232 | 148 | 6 | 36 | 254 | 30 | 256 | 7.22e-22 | 95.1 |
Msa0088830 | AT4G23250.2 | 28.448 | 232 | 148 | 6 | 36 | 254 | 30 | 256 | 7.79e-22 | 95.1 |
Msa0088830 | AT4G23250.2 | 27.358 | 212 | 129 | 5 | 43 | 254 | 733 | 919 | 9.08e-14 | 71.6 |
Msa0088830 | AT4G23310.1 | 33.005 | 203 | 123 | 6 | 50 | 248 | 157 | 350 | 2.82e-21 | 93.6 |
Msa0088830 | AT4G23310.2 | 33.005 | 203 | 123 | 6 | 50 | 248 | 157 | 350 | 3.38e-21 | 93.2 |
Msa0088830 | AT4G04500.2 | 31.731 | 208 | 127 | 5 | 61 | 255 | 49 | 254 | 1.34e-20 | 91.3 |
Msa0088830 | AT4G04500.3 | 31.731 | 208 | 127 | 5 | 61 | 255 | 49 | 254 | 1.34e-20 | 91.3 |
Msa0088830 | AT4G04500.1 | 31.731 | 208 | 127 | 5 | 61 | 255 | 49 | 254 | 1.54e-20 | 91.3 |
Msa0088830 | AT4G21400.8 | 37.226 | 137 | 84 | 2 | 130 | 265 | 1 | 136 | 1.58e-20 | 91.3 |
Msa0088830 | AT3G21910.1 | 28.634 | 227 | 148 | 7 | 42 | 258 | 48 | 270 | 1.98e-20 | 88.6 |
Msa0088830 | AT4G23260.2 | 28.636 | 220 | 149 | 5 | 36 | 249 | 30 | 247 | 2.62e-20 | 90.5 |
Msa0088830 | AT4G23260.1 | 28.636 | 220 | 149 | 5 | 36 | 249 | 30 | 247 | 3.31e-20 | 90.1 |
Msa0088830 | AT5G48540.1 | 29.032 | 248 | 159 | 7 | 13 | 256 | 9 | 243 | 3.48e-20 | 87.4 |
Msa0088830 | AT3G21920.1 | 30.204 | 245 | 141 | 11 | 32 | 258 | 40 | 272 | 3.57e-20 | 87.8 |
Msa0088830 | AT3G21920.2 | 30.204 | 245 | 141 | 11 | 32 | 258 | 62 | 294 | 4.05e-20 | 88.2 |
Msa0088830 | AT1G63600.1 | 28.054 | 221 | 149 | 4 | 35 | 250 | 39 | 254 | 9.95e-20 | 87.4 |
Msa0088830 | AT1G63580.1 | 29.469 | 207 | 139 | 5 | 49 | 250 | 35 | 239 | 1.02e-19 | 86.3 |
Msa0088830 | AT1G63550.1 | 28.972 | 214 | 145 | 4 | 40 | 250 | 37 | 246 | 1.10e-19 | 87.0 |
Msa0088830 | AT3G21930.1 | 29.084 | 251 | 148 | 11 | 32 | 264 | 40 | 278 | 1.13e-19 | 86.3 |
Msa0088830 | AT3G22040.1 | 28.295 | 258 | 158 | 9 | 4 | 248 | 7 | 250 | 1.25e-19 | 85.9 |
Msa0088830 | AT1G63570.3 | 26.000 | 250 | 170 | 5 | 3 | 249 | 4 | 241 | 1.10e-18 | 84.0 |
Msa0088830 | AT1G63570.1 | 26.000 | 250 | 170 | 5 | 3 | 249 | 4 | 241 | 1.10e-18 | 84.0 |
Msa0088830 | AT1G63570.2 | 26.000 | 250 | 170 | 5 | 3 | 249 | 57 | 294 | 1.68e-18 | 84.0 |
Msa0088830 | AT5G41300.1 | 26.531 | 245 | 171 | 4 | 6 | 247 | 7 | 245 | 2.06e-18 | 83.2 |
Msa0088830 | AT4G11460.2 | 31.609 | 174 | 104 | 5 | 87 | 248 | 1 | 171 | 3.90e-18 | 84.3 |
Msa0088830 | AT3G29050.2 | 27.372 | 274 | 175 | 9 | 4 | 258 | 10 | 278 | 1.71e-17 | 80.5 |
Msa0088830 | AT5G41280.1 | 27.935 | 247 | 160 | 6 | 12 | 249 | 7 | 244 | 3.21e-17 | 79.7 |
Msa0088830 | AT4G11480.2 | 22.927 | 205 | 149 | 3 | 50 | 250 | 37 | 236 | 8.00e-17 | 80.1 |
Msa0088830 | AT4G11480.4 | 22.927 | 205 | 149 | 3 | 50 | 250 | 37 | 236 | 8.35e-17 | 80.1 |
Msa0088830 | AT3G21940.1 | 29.091 | 275 | 162 | 12 | 2 | 255 | 12 | 274 | 8.70e-17 | 78.6 |
Msa0088830 | AT4G11480.3 | 22.927 | 205 | 149 | 3 | 50 | 250 | 37 | 236 | 9.63e-17 | 80.1 |
Msa0088830 | AT4G11480.1 | 22.927 | 205 | 149 | 3 | 50 | 250 | 37 | 236 | 9.84e-17 | 80.1 |
Msa0088830 | AT4G11470.2 | 25.701 | 214 | 144 | 6 | 51 | 254 | 43 | 251 | 1.24e-16 | 79.7 |
Msa0088830 | AT4G11470.1 | 25.701 | 214 | 144 | 6 | 51 | 254 | 38 | 246 | 1.26e-16 | 79.7 |
Msa0088830 | AT4G23190.3 | 31.361 | 169 | 104 | 5 | 89 | 248 | 1 | 166 | 1.83e-16 | 79.3 |
Msa0088830 | AT4G23190.4 | 31.361 | 169 | 104 | 5 | 89 | 248 | 1 | 166 | 1.83e-16 | 79.3 |
Msa0088830 | AT3G21940.2 | 30.556 | 180 | 106 | 4 | 92 | 255 | 3 | 179 | 2.06e-16 | 75.5 |
Msa0088830 | AT3G22010.1 | 27.928 | 222 | 132 | 9 | 42 | 248 | 48 | 256 | 1.52e-15 | 74.7 |
Msa0088830 | AT4G20680.1 | 28.342 | 187 | 123 | 5 | 71 | 248 | 76 | 260 | 5.64e-15 | 73.2 |
Msa0088830 | AT4G04570.1 | 27.179 | 195 | 132 | 4 | 68 | 254 | 59 | 251 | 1.49e-14 | 73.6 |
Msa0088830 | AT4G04570.2 | 27.179 | 195 | 132 | 4 | 68 | 254 | 59 | 251 | 1.71e-14 | 73.6 |
Msa0088830 | AT3G21900.2 | 25.481 | 208 | 146 | 4 | 41 | 248 | 45 | 243 | 2.35e-14 | 71.2 |
Msa0088830 | AT3G22050.1 | 26.941 | 219 | 134 | 6 | 43 | 248 | 46 | 251 | 3.53e-14 | 70.9 |
Msa0088830 | AT1G63590.1 | 25.405 | 185 | 131 | 3 | 71 | 250 | 64 | 246 | 4.64e-14 | 70.5 |
Msa0088830 | AT4G23290.2 | 27.805 | 205 | 138 | 6 | 51 | 248 | 41 | 242 | 9.70e-14 | 71.2 |
Msa0088830 | AT4G04510.1 | 28.283 | 198 | 119 | 6 | 71 | 254 | 60 | 248 | 1.21e-13 | 70.9 |
Msa0088830 | AT4G04510.2 | 28.283 | 198 | 119 | 6 | 71 | 254 | 62 | 250 | 1.28e-13 | 70.9 |
Msa0088830 | AT3G22000.1 | 25.498 | 251 | 172 | 8 | 8 | 248 | 15 | 260 | 2.06e-13 | 68.9 |
Msa0088830 | AT1G70690.1 | 27.805 | 205 | 124 | 8 | 49 | 248 | 48 | 233 | 4.44e-13 | 68.2 |
Msa0088830 | AT4G04540.4 | 23.556 | 225 | 157 | 6 | 43 | 254 | 32 | 254 | 9.43e-13 | 68.2 |
Msa0088830 | AT4G04540.1 | 23.556 | 225 | 157 | 6 | 43 | 254 | 32 | 254 | 1.53e-12 | 67.8 |
Msa0088830 | AT4G04540.3 | 23.556 | 225 | 157 | 6 | 43 | 254 | 32 | 254 | 1.79e-12 | 67.4 |
Msa0088830 | AT4G04540.2 | 23.556 | 225 | 157 | 6 | 43 | 254 | 32 | 254 | 1.93e-12 | 67.4 |
Msa0088830 | AT3G21970.1 | 26.786 | 224 | 144 | 7 | 39 | 248 | 40 | 257 | 2.55e-12 | 65.9 |
Msa0088830 | AT4G04490.1 | 26.126 | 222 | 131 | 7 | 50 | 253 | 40 | 246 | 3.61e-12 | 66.6 |
Msa0088830 | AT2G01660.2 | 23.810 | 252 | 154 | 11 | 10 | 249 | 6 | 231 | 2.89e-11 | 62.8 |
Msa0088830 | AT2G01660.3 | 24.000 | 250 | 152 | 11 | 10 | 247 | 6 | 229 | 4.52e-11 | 62.4 |
Msa0088830 | AT2G01660.1 | 24.000 | 250 | 152 | 11 | 10 | 247 | 6 | 229 | 4.69e-11 | 62.4 |
Msa0088830 | AT3G21900.1 | 24.038 | 208 | 141 | 4 | 41 | 248 | 45 | 235 | 5.31e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTAGGCCTAAACGAAAT+TGG | 0.229067 | 1_2:-70003223 | Msa0088830:CDS |
TATTCAGACCGTTCTATATT+AGG | 0.252445 | 1_2:-70003238 | Msa0088830:CDS |
AGTTACCTCTATCGTTATTT+TGG | 0.283454 | 1_2:+70003524 | None:intergenic |
GGCAGATCAATTTAATATCT+TGG | 0.285791 | 1_2:-70003161 | Msa0088830:CDS |
CGTTTACTTTGTCATTGTTT+TGG | 0.299429 | 1_2:+70003401 | None:intergenic |
CTATCAACCTAAAGCAAAAC+TGG | 0.325641 | 1_2:-70002876 | Msa0088830:CDS |
TTTCAAGATGTTGTAGCAAT+AGG | 0.335675 | 1_2:-70002958 | Msa0088830:CDS |
TTGCTTTAGGTTGATAGAAT+TGG | 0.343077 | 1_2:+70002882 | None:intergenic |
TTAAGAAGCAAGGCTATAAA+TGG | 0.352413 | 1_2:-70003118 | Msa0088830:CDS |
TTGGTCGTTGTTGTCTGCTT+GGG | 0.365814 | 1_2:+70003567 | None:intergenic |
AAGCAGGTCCAATTTCGTTT+AGG | 0.394951 | 1_2:+70003215 | None:intergenic |
AGTAGTAATCAAATAATATA+TGG | 0.412356 | 1_2:-70003052 | Msa0088830:CDS |
TTAGACCAAGCTGTAATTTG+AGG | 0.412757 | 1_2:-70002919 | Msa0088830:CDS |
TTTGGTCGTTGTTGTCTGCT+TGG | 0.426348 | 1_2:+70003566 | None:intergenic |
GATAATTATGAGAAAGAGAA+AGG | 0.435798 | 1_2:+70003606 | None:intergenic |
CAGTGTACACCTGACTTGTC+TGG | 0.440744 | 1_2:-70003022 | Msa0088830:CDS |
TGCTTGTGTGAGATTGAATC+TGG | 0.442950 | 1_2:+70003318 | None:intergenic |
AATGACAAAGTAAACGTCAT+TGG | 0.446473 | 1_2:-70003394 | Msa0088830:CDS |
AGGCATTTGCGACAATCATC+AGG | 0.449621 | 1_2:+70003349 | None:intergenic |
TCACATCGTAAGTATGTTGT+AGG | 0.450527 | 1_2:-70003091 | Msa0088830:CDS |
TGCGACCAAAATAACGATAG+AGG | 0.460057 | 1_2:-70003529 | Msa0088830:CDS |
CTTGGGGTTTAGATGTGAAA+AGG | 0.460200 | 1_2:+70003584 | None:intergenic |
TATATTATTTGATTACTACT+AGG | 0.467816 | 1_2:+70003055 | None:intergenic |
GATAGAGGTAACTACATAAC+CGG | 0.483653 | 1_2:-70003514 | Msa0088830:CDS |
TGAGAAAGAGAAAGGAGAGT+GGG | 0.486566 | 1_2:+70003614 | None:intergenic |
TCAAACCTCAAATTACAGCT+TGG | 0.526400 | 1_2:+70002914 | None:intergenic |
ATTGAATGATTTAAGAAGCA+AGG | 0.526753 | 1_2:-70003128 | Msa0088830:CDS |
AGATGTTGTAGCAATAGGAT+TGG | 0.527777 | 1_2:-70002953 | Msa0088830:CDS |
CACTGGGGACCAGACAAGTC+AGG | 0.531473 | 1_2:+70003013 | None:intergenic |
GAGCAATTCTGAGGCTGTTG+TGG | 0.536469 | 1_2:+70003482 | None:intergenic |
GATTGTCGCAAATGCCTAGT+TGG | 0.540455 | 1_2:-70003343 | Msa0088830:CDS |
ATGAGAAAGAGAAAGGAGAG+TGG | 0.541993 | 1_2:+70003613 | None:intergenic |
GCTGTTGTGGTAGGTATCAC+CGG | 0.542628 | 1_2:+70003495 | None:intergenic |
AAGTTCCATGCAAAATAAGC+AGG | 0.549615 | 1_2:+70003199 | None:intergenic |
CGTTTAGGCCTAATATAGAA+CGG | 0.560797 | 1_2:+70003230 | None:intergenic |
GAACTTGAACAATGCAACAA+TGG | 0.575248 | 1_2:-70003182 | Msa0088830:CDS |
GATTGAATCTGGAACCAACT+AGG | 0.575788 | 1_2:+70003329 | None:intergenic |
TGGTCGTTGTTGTCTGCTTG+GGG | 0.575882 | 1_2:+70003568 | None:intergenic |
AATTCTGAGGCTGTTGTGGT+AGG | 0.584609 | 1_2:+70003486 | None:intergenic |
AAGCAAACAATCATCACACT+GGG | 0.585932 | 1_2:+70002997 | None:intergenic |
GAAGCAAACAATCATCACAC+TGG | 0.591047 | 1_2:+70002996 | None:intergenic |
TATGTTGTAGGAACAATGAC+GGG | 0.594989 | 1_2:-70003079 | Msa0088830:CDS |
GTATGTTGTAGGAACAATGA+CGG | 0.611472 | 1_2:-70003080 | Msa0088830:CDS |
AACGTCATTGGAATATGTAG+AGG | 0.614721 | 1_2:-70003382 | Msa0088830:CDS |
GGTTTCTACAACAGCAACAA+TGG | 0.624522 | 1_2:-70003424 | Msa0088830:CDS |
AGAAGCAATTGGATGGTACG+AGG | 0.670531 | 1_2:-70003281 | Msa0088830:CDS |
GGGAGATTAGAGCAATTCTG+AGG | 0.693843 | 1_2:+70003473 | None:intergenic |
AGCAAACAATCATCACACTG+GGG | 0.800516 | 1_2:+70002998 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATTATTTGATTACTACT+AGG | + | chr1_2:70003441-70003460 | None:intergenic | 15.0% |
!! | AGTAGTAATCAAATAATATA+TGG | - | chr1_2:70003441-70003460 | Msa0088830:CDS | 15.0% |
!! | TATATTATTTGATTACTACT+AGG | + | chr1_2:70003441-70003460 | None:intergenic | 15.0% |
!! | AGTAGTAATCAAATAATATA+TGG | - | chr1_2:70003441-70003460 | Msa0088830:CDS | 15.0% |
! | GATAATTATGAGAAAGAGAA+AGG | + | chr1_2:70002890-70002909 | None:intergenic | 25.0% |
!!! | AATTTTTGAGTTGTAAGTGA+GGG | + | chr1_2:70003043-70003062 | None:intergenic | 25.0% |
! | TACAACTCAAAAATTGACTA+CGG | - | chr1_2:70003048-70003067 | Msa0088830:CDS | 25.0% |
!!! | CCAATTGCTTCTTTTTTATT+TGG | + | chr1_2:70003204-70003223 | None:intergenic | 25.0% |
! | CCAAATAAAAAAGAAGCAAT+TGG | - | chr1_2:70003201-70003220 | Msa0088830:CDS | 25.0% |
! | ATAAAAAAGAAGCAATTGGA+TGG | - | chr1_2:70003205-70003224 | Msa0088830:CDS | 25.0% |
! | ATTGAATGATTTAAGAAGCA+AGG | - | chr1_2:70003365-70003384 | Msa0088830:CDS | 25.0% |
! | GATAATTATGAGAAAGAGAA+AGG | + | chr1_2:70002890-70002909 | None:intergenic | 25.0% |
!!! | AATTTTTGAGTTGTAAGTGA+GGG | + | chr1_2:70003043-70003062 | None:intergenic | 25.0% |
! | TACAACTCAAAAATTGACTA+CGG | - | chr1_2:70003048-70003067 | Msa0088830:CDS | 25.0% |
!!! | CCAATTGCTTCTTTTTTATT+TGG | + | chr1_2:70003204-70003223 | None:intergenic | 25.0% |
! | CCAAATAAAAAAGAAGCAAT+TGG | - | chr1_2:70003201-70003220 | Msa0088830:CDS | 25.0% |
! | ATAAAAAAGAAGCAATTGGA+TGG | - | chr1_2:70003205-70003224 | Msa0088830:CDS | 25.0% |
! | ATTGAATGATTTAAGAAGCA+AGG | - | chr1_2:70003365-70003384 | Msa0088830:CDS | 25.0% |
! | CGCAAAAGTAGTGAAATTTT+TGG | + | chr1_2:70002948-70002967 | None:intergenic | 30.0% |
! | AGTTACCTCTATCGTTATTT+TGG | + | chr1_2:70002972-70002991 | None:intergenic | 30.0% |
!!! | CAATTTTTGAGTTGTAAGTG+AGG | + | chr1_2:70003044-70003063 | None:intergenic | 30.0% |
! | CGTTTACTTTGTCATTGTTT+TGG | + | chr1_2:70003095-70003114 | None:intergenic | 30.0% |
AATGACAAAGTAAACGTCAT+TGG | - | chr1_2:70003099-70003118 | Msa0088830:CDS | 30.0% | |
TATTCAGACCGTTCTATATT+AGG | - | chr1_2:70003255-70003274 | Msa0088830:CDS | 30.0% | |
ATATTAGGCCTAAACGAAAT+TGG | - | chr1_2:70003270-70003289 | Msa0088830:CDS | 30.0% | |
GGCAGATCAATTTAATATCT+TGG | - | chr1_2:70003332-70003351 | Msa0088830:CDS | 30.0% | |
TTAAGAAGCAAGGCTATAAA+TGG | - | chr1_2:70003375-70003394 | Msa0088830:CDS | 30.0% | |
TTTCAAGATGTTGTAGCAAT+AGG | - | chr1_2:70003535-70003554 | Msa0088830:CDS | 30.0% | |
!! | TTGCTTTAGGTTGATAGAAT+TGG | + | chr1_2:70003614-70003633 | None:intergenic | 30.0% |
! | CGCAAAAGTAGTGAAATTTT+TGG | + | chr1_2:70002948-70002967 | None:intergenic | 30.0% |
! | AGTTACCTCTATCGTTATTT+TGG | + | chr1_2:70002972-70002991 | None:intergenic | 30.0% |
!!! | CAATTTTTGAGTTGTAAGTG+AGG | + | chr1_2:70003044-70003063 | None:intergenic | 30.0% |
! | CGTTTACTTTGTCATTGTTT+TGG | + | chr1_2:70003095-70003114 | None:intergenic | 30.0% |
AATGACAAAGTAAACGTCAT+TGG | - | chr1_2:70003099-70003118 | Msa0088830:CDS | 30.0% | |
TATTCAGACCGTTCTATATT+AGG | - | chr1_2:70003255-70003274 | Msa0088830:CDS | 30.0% | |
ATATTAGGCCTAAACGAAAT+TGG | - | chr1_2:70003270-70003289 | Msa0088830:CDS | 30.0% | |
GGCAGATCAATTTAATATCT+TGG | - | chr1_2:70003332-70003351 | Msa0088830:CDS | 30.0% | |
TTAAGAAGCAAGGCTATAAA+TGG | - | chr1_2:70003375-70003394 | Msa0088830:CDS | 30.0% | |
TTTCAAGATGTTGTAGCAAT+AGG | - | chr1_2:70003535-70003554 | Msa0088830:CDS | 30.0% | |
!! | TTGCTTTAGGTTGATAGAAT+TGG | + | chr1_2:70003614-70003633 | None:intergenic | 30.0% |
GATAGAGGTAACTACATAAC+CGG | - | chr1_2:70002979-70002998 | Msa0088830:CDS | 35.0% | |
AACGTCATTGGAATATGTAG+AGG | - | chr1_2:70003111-70003130 | Msa0088830:CDS | 35.0% | |
CGTTTAGGCCTAATATAGAA+CGG | + | chr1_2:70003266-70003285 | None:intergenic | 35.0% | |
AAGTTCCATGCAAAATAAGC+AGG | + | chr1_2:70003297-70003316 | None:intergenic | 35.0% | |
GAACTTGAACAATGCAACAA+TGG | - | chr1_2:70003311-70003330 | Msa0088830:CDS | 35.0% | |
TCACATCGTAAGTATGTTGT+AGG | - | chr1_2:70003402-70003421 | Msa0088830:CDS | 35.0% | |
GTATGTTGTAGGAACAATGA+CGG | - | chr1_2:70003413-70003432 | Msa0088830:CDS | 35.0% | |
TATGTTGTAGGAACAATGAC+GGG | - | chr1_2:70003414-70003433 | Msa0088830:CDS | 35.0% | |
AAGCAAACAATCATCACACT+GGG | + | chr1_2:70003499-70003518 | None:intergenic | 35.0% | |
AGATGTTGTAGCAATAGGAT+TGG | - | chr1_2:70003540-70003559 | Msa0088830:CDS | 35.0% | |
TTAGACCAAGCTGTAATTTG+AGG | - | chr1_2:70003574-70003593 | Msa0088830:CDS | 35.0% | |
TCAAACCTCAAATTACAGCT+TGG | + | chr1_2:70003582-70003601 | None:intergenic | 35.0% | |
CTATCAACCTAAAGCAAAAC+TGG | - | chr1_2:70003617-70003636 | Msa0088830:CDS | 35.0% | |
GATAGAGGTAACTACATAAC+CGG | - | chr1_2:70002979-70002998 | Msa0088830:CDS | 35.0% | |
AACGTCATTGGAATATGTAG+AGG | - | chr1_2:70003111-70003130 | Msa0088830:CDS | 35.0% | |
CGTTTAGGCCTAATATAGAA+CGG | + | chr1_2:70003266-70003285 | None:intergenic | 35.0% | |
AAGTTCCATGCAAAATAAGC+AGG | + | chr1_2:70003297-70003316 | None:intergenic | 35.0% | |
GAACTTGAACAATGCAACAA+TGG | - | chr1_2:70003311-70003330 | Msa0088830:CDS | 35.0% | |
TCACATCGTAAGTATGTTGT+AGG | - | chr1_2:70003402-70003421 | Msa0088830:CDS | 35.0% | |
GTATGTTGTAGGAACAATGA+CGG | - | chr1_2:70003413-70003432 | Msa0088830:CDS | 35.0% | |
TATGTTGTAGGAACAATGAC+GGG | - | chr1_2:70003414-70003433 | Msa0088830:CDS | 35.0% | |
AAGCAAACAATCATCACACT+GGG | + | chr1_2:70003499-70003518 | None:intergenic | 35.0% | |
AGATGTTGTAGCAATAGGAT+TGG | - | chr1_2:70003540-70003559 | Msa0088830:CDS | 35.0% | |
TTAGACCAAGCTGTAATTTG+AGG | - | chr1_2:70003574-70003593 | Msa0088830:CDS | 35.0% | |
TCAAACCTCAAATTACAGCT+TGG | + | chr1_2:70003582-70003601 | None:intergenic | 35.0% | |
CTATCAACCTAAAGCAAAAC+TGG | - | chr1_2:70003617-70003636 | Msa0088830:CDS | 35.0% | |
TGAGAAAGAGAAAGGAGAGT+GGG | + | chr1_2:70002882-70002901 | None:intergenic | 40.0% | |
ATGAGAAAGAGAAAGGAGAG+TGG | + | chr1_2:70002883-70002902 | None:intergenic | 40.0% | |
CTTGGGGTTTAGATGTGAAA+AGG | + | chr1_2:70002912-70002931 | None:intergenic | 40.0% | |
TGCGACCAAAATAACGATAG+AGG | - | chr1_2:70002964-70002983 | Msa0088830:CDS | 40.0% | |
GGTTTCTACAACAGCAACAA+TGG | - | chr1_2:70003069-70003088 | Msa0088830:CDS | 40.0% | |
! | GATTGAATCTGGAACCAACT+AGG | + | chr1_2:70003167-70003186 | None:intergenic | 40.0% |
TGCTTGTGTGAGATTGAATC+TGG | + | chr1_2:70003178-70003197 | None:intergenic | 40.0% | |
AAGCAGGTCCAATTTCGTTT+AGG | + | chr1_2:70003281-70003300 | None:intergenic | 40.0% | |
!!! | TTGGACCTGCTTATTTTGCA+TGG | - | chr1_2:70003289-70003308 | Msa0088830:CDS | 40.0% |
AGCAAACAATCATCACACTG+GGG | + | chr1_2:70003498-70003517 | None:intergenic | 40.0% | |
GAAGCAAACAATCATCACAC+TGG | + | chr1_2:70003500-70003519 | None:intergenic | 40.0% | |
! | TGTGAAGCCAGTTTTGCTTT+AGG | + | chr1_2:70003627-70003646 | None:intergenic | 40.0% |
TGAGAAAGAGAAAGGAGAGT+GGG | + | chr1_2:70002882-70002901 | None:intergenic | 40.0% | |
ATGAGAAAGAGAAAGGAGAG+TGG | + | chr1_2:70002883-70002902 | None:intergenic | 40.0% | |
CTTGGGGTTTAGATGTGAAA+AGG | + | chr1_2:70002912-70002931 | None:intergenic | 40.0% | |
TGCGACCAAAATAACGATAG+AGG | - | chr1_2:70002964-70002983 | Msa0088830:CDS | 40.0% | |
GGTTTCTACAACAGCAACAA+TGG | - | chr1_2:70003069-70003088 | Msa0088830:CDS | 40.0% | |
! | GATTGAATCTGGAACCAACT+AGG | + | chr1_2:70003167-70003186 | None:intergenic | 40.0% |
TGCTTGTGTGAGATTGAATC+TGG | + | chr1_2:70003178-70003197 | None:intergenic | 40.0% | |
AAGCAGGTCCAATTTCGTTT+AGG | + | chr1_2:70003281-70003300 | None:intergenic | 40.0% | |
!!! | TTGGACCTGCTTATTTTGCA+TGG | - | chr1_2:70003289-70003308 | Msa0088830:CDS | 40.0% |
AGCAAACAATCATCACACTG+GGG | + | chr1_2:70003498-70003517 | None:intergenic | 40.0% | |
GAAGCAAACAATCATCACAC+TGG | + | chr1_2:70003500-70003519 | None:intergenic | 40.0% | |
! | TGTGAAGCCAGTTTTGCTTT+AGG | + | chr1_2:70003627-70003646 | None:intergenic | 40.0% |
TTGGTCGTTGTTGTCTGCTT+GGG | + | chr1_2:70002929-70002948 | None:intergenic | 45.0% | |
TTTGGTCGTTGTTGTCTGCT+TGG | + | chr1_2:70002930-70002949 | None:intergenic | 45.0% | |
!! | AATTCTGAGGCTGTTGTGGT+AGG | + | chr1_2:70003010-70003029 | None:intergenic | 45.0% |
GGGAGATTAGAGCAATTCTG+AGG | + | chr1_2:70003023-70003042 | None:intergenic | 45.0% | |
AGGCATTTGCGACAATCATC+AGG | + | chr1_2:70003147-70003166 | None:intergenic | 45.0% | |
GATTGTCGCAAATGCCTAGT+TGG | - | chr1_2:70003150-70003169 | Msa0088830:CDS | 45.0% | |
AGAAGCAATTGGATGGTACG+AGG | - | chr1_2:70003212-70003231 | Msa0088830:CDS | 45.0% | |
TTGGTCGTTGTTGTCTGCTT+GGG | + | chr1_2:70002929-70002948 | None:intergenic | 45.0% | |
TTTGGTCGTTGTTGTCTGCT+TGG | + | chr1_2:70002930-70002949 | None:intergenic | 45.0% | |
!! | AATTCTGAGGCTGTTGTGGT+AGG | + | chr1_2:70003010-70003029 | None:intergenic | 45.0% |
GGGAGATTAGAGCAATTCTG+AGG | + | chr1_2:70003023-70003042 | None:intergenic | 45.0% | |
AGGCATTTGCGACAATCATC+AGG | + | chr1_2:70003147-70003166 | None:intergenic | 45.0% | |
GATTGTCGCAAATGCCTAGT+TGG | - | chr1_2:70003150-70003169 | Msa0088830:CDS | 45.0% | |
AGAAGCAATTGGATGGTACG+AGG | - | chr1_2:70003212-70003231 | Msa0088830:CDS | 45.0% | |
TGGTCGTTGTTGTCTGCTTG+GGG | + | chr1_2:70002928-70002947 | None:intergenic | 50.0% | |
GCTGTTGTGGTAGGTATCAC+CGG | + | chr1_2:70003001-70003020 | None:intergenic | 50.0% | |
!! | GAGCAATTCTGAGGCTGTTG+TGG | + | chr1_2:70003014-70003033 | None:intergenic | 50.0% |
! | CAGTGTACACCTGACTTGTC+TGG | - | chr1_2:70003471-70003490 | Msa0088830:CDS | 50.0% |
TGGTCGTTGTTGTCTGCTTG+GGG | + | chr1_2:70002928-70002947 | None:intergenic | 50.0% | |
GCTGTTGTGGTAGGTATCAC+CGG | + | chr1_2:70003001-70003020 | None:intergenic | 50.0% | |
!! | GAGCAATTCTGAGGCTGTTG+TGG | + | chr1_2:70003014-70003033 | None:intergenic | 50.0% |
! | CAGTGTACACCTGACTTGTC+TGG | - | chr1_2:70003471-70003490 | Msa0088830:CDS | 50.0% |
CACTGGGGACCAGACAAGTC+AGG | + | chr1_2:70003483-70003502 | None:intergenic | 60.0% | |
CACTGGGGACCAGACAAGTC+AGG | + | chr1_2:70003483-70003502 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 70002859 | 70003656 | 70002859 | ID=Msa0088830;Name=Msa0088830 |
chr1_2 | mRNA | 70002859 | 70003656 | 70002859 | ID=Msa0088830-mRNA-1;Parent=Msa0088830;Name=Msa0088830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|265 |
chr1_2 | exon | 70002859 | 70003656 | 70002859 | ID=Msa0088830-mRNA-1:exon:24099;Parent=Msa0088830-mRNA-1 |
chr1_2 | CDS | 70002859 | 70003656 | 70002859 | ID=Msa0088830-mRNA-1:cds;Parent=Msa0088830-mRNA-1 |
Gene Sequence |
Protein sequence |