AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0088830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088830 MtrunA17_Chr1g0206601 90.566 265 25 0 1 265 22 286 0.0 507
Msa0088830 MtrunA17_Chr1g0206581 81.022 274 42 2 1 265 18 290 6.19e-162 450
Msa0088830 MtrunA17_Chr1g0206651 72.266 256 65 4 1 255 1 251 2.08e-133 377
Msa0088830 MtrunA17_Chr1g0206571 62.343 239 90 0 20 258 23 261 1.31e-108 316
Msa0088830 MtrunA17_Chr1g0154361 62.151 251 90 3 10 255 3 253 2.53e-106 310
Msa0088830 MtrunA17_Chr1g0154341 57.034 263 106 4 10 265 3 265 5.55e-101 296
Msa0088830 MtrunA17_Chr1g0154371 55.769 260 108 4 1 254 8 266 4.98e-93 288
Msa0088830 MtrunA17_Chr1g0154311 54.435 248 109 2 14 258 10 256 6.46e-92 285
Msa0088830 MtrunA17_Chr1g0154351 56.349 252 105 3 10 256 3 254 1.99e-91 283
Msa0088830 MtrunA17_Chr1g0154321 55.294 255 105 5 10 255 3 257 2.65e-87 275
Msa0088830 MtrunA17_Chr1g0206531 51.373 255 112 6 4 256 8 252 2.49e-79 252
Msa0088830 MtrunA17_Chr5g0428591 49.187 246 117 5 10 255 8 245 4.11e-73 224
Msa0088830 MtrunA17_Chr1g0206461 48.235 255 121 5 2 256 6 249 1.00e-71 231
Msa0088830 MtrunA17_Chr5g0428571 51.364 220 103 3 40 259 35 250 4.07e-67 217
Msa0088830 MtrunA17_Chr5g0428531 46.063 254 114 7 10 254 8 247 1.94e-65 206
Msa0088830 MtrunA17_Chr1g0206451 49.219 256 121 5 2 256 40 287 2.09e-63 210
Msa0088830 MtrunA17_Chr1g0206521 47.843 255 123 5 2 256 648 892 9.27e-62 210
Msa0088830 MtrunA17_Chr1g0206521 47.718 241 117 5 16 256 19 250 1.22e-59 204
Msa0088830 MtrunA17_Chr1g0206561 40.873 252 140 4 11 262 4 246 6.25e-52 179
Msa0088830 MtrunA17_Chr5g0426941 41.288 264 134 8 4 262 1 248 5.48e-51 176
Msa0088830 MtrunA17_Chr1g0206381 37.097 248 142 6 24 263 19 260 4.56e-44 152
Msa0088830 MtrunA17_Chr1g0206401 43.256 215 107 8 43 248 33 241 2.46e-43 155
Msa0088830 MtrunA17_Chr2g0323011 32.800 250 149 9 1 248 7 239 1.25e-34 125
Msa0088830 MtrunA17_Chr1g0205771 33.191 235 146 6 24 255 33 259 4.22e-32 124
Msa0088830 MtrunA17_Chr1g0206331 34.101 217 134 7 44 255 41 253 1.56e-31 122
Msa0088830 MtrunA17_Chr5g0428601 48.413 126 62 3 130 255 1 123 2.29e-31 119
Msa0088830 MtrunA17_Chr6g0475001 33.333 252 154 8 11 255 7 251 4.40e-30 118
Msa0088830 MtrunA17_Chr6g0475001 34.184 196 113 8 68 254 301 489 5.45e-18 83.6
Msa0088830 MtrunA17_Chr7g0234231 29.435 248 166 5 9 256 1 239 4.86e-30 113
Msa0088830 MtrunA17_Chr6g0475121 32.046 259 162 7 9 261 7 257 5.34e-29 115
Msa0088830 MtrunA17_Chr6g0475121 28.992 238 150 10 21 254 268 490 2.09e-18 84.3
Msa0088830 MtrunA17_Chr6g0474901 31.308 214 138 5 47 255 35 244 4.23e-28 113
Msa0088830 MtrunA17_Chr6g0474901 30.864 243 142 11 23 254 256 483 4.45e-19 86.7
Msa0088830 MtrunA17_Chr6g0474971 32.710 214 135 5 47 255 35 244 1.04e-27 108
Msa0088830 MtrunA17_Chr5g0394001 31.707 246 156 8 13 254 12 249 1.11e-27 111
Msa0088830 MtrunA17_Chr1g0206361 33.184 223 138 7 40 258 42 257 1.40e-27 111
Msa0088830 MtrunA17_Chr1g0206201 32.271 251 156 9 4 248 6 248 2.19e-27 107
Msa0088830 MtrunA17_Chr8g0347571 31.200 250 154 8 9 254 7 242 3.35e-26 107
Msa0088830 MtrunA17_Chr8g0347571 28.049 246 146 12 23 255 261 488 8.25e-18 82.8
Msa0088830 MtrunA17_Chr6g0474811 31.203 266 155 10 4 255 1 252 1.01e-25 106
Msa0088830 MtrunA17_Chr6g0474811 32.500 200 122 7 68 259 303 497 3.80e-20 89.7
Msa0088830 MtrunA17_Chr6g0475201 29.924 264 174 6 1 261 1 256 1.39e-25 105
Msa0088830 MtrunA17_Chr6g0475201 35.714 168 101 6 89 254 328 490 3.54e-23 98.6
Msa0088830 MtrunA17_Chr6g0475111 29.317 249 167 6 9 254 10 252 2.89e-25 104
Msa0088830 MtrunA17_Chr6g0475111 30.058 173 108 7 89 255 337 502 5.91e-17 80.5
Msa0088830 MtrunA17_Chr1g0206351 29.437 231 153 5 28 255 31 254 4.21e-25 104
Msa0088830 MtrunA17_Chr6g0474871 30.677 251 159 8 12 255 7 249 7.43e-25 103
Msa0088830 MtrunA17_Chr6g0474871 31.841 201 122 8 74 264 304 499 5.18e-19 86.7
Msa0088830 MtrunA17_Chr2g0322981 29.675 246 153 8 6 248 11 239 1.26e-24 98.6
Msa0088830 MtrunA17_Chr5g0393981 31.193 218 129 9 45 254 113 317 1.36e-24 102
Msa0088830 MtrunA17_Chr5g0394021 33.333 183 117 3 72 254 70 247 3.82e-24 101
Msa0088830 MtrunA17_Chr1g0206231 32.536 209 131 7 51 255 52 254 5.91e-24 100
Msa0088830 MtrunA17_Chr3g0081001 26.966 267 176 6 3 265 5 256 7.53e-24 100
Msa0088830 MtrunA17_Chr1g0206291 30.040 253 159 9 11 255 23 265 1.82e-23 99.0
Msa0088830 MtrunA17_Chr6g0475091 31.336 217 140 5 44 255 48 260 4.82e-23 98.2
Msa0088830 MtrunA17_Chr6g0475091 33.889 180 112 6 82 259 330 504 5.58e-18 83.6
Msa0088830 MtrunA17_Chr6g0474861 32.530 249 151 11 11 254 7 243 5.57e-23 97.8
Msa0088830 MtrunA17_Chr3g0081031 32.377 244 151 6 9 249 22 254 5.90e-23 97.8
Msa0088830 MtrunA17_Chr3g0081051 32.075 212 135 5 41 249 31 236 8.47e-23 94.0
Msa0088830 MtrunA17_Chr3g0081011 27.727 220 145 6 50 265 46 255 1.01e-22 97.1
Msa0088830 MtrunA17_Chr5g0394011 30.556 216 139 7 45 254 41 251 1.09e-22 97.1
Msa0088830 MtrunA17_Chr8g0354271 27.027 259 178 7 9 264 8 258 1.79e-21 93.6
Msa0088830 MtrunA17_Chr8g0354421 30.350 257 153 13 9 255 30 270 2.83e-20 90.1
Msa0088830 MtrunA17_Chr8g0354441 27.778 270 166 12 9 265 13 266 3.06e-20 90.1
Msa0088830 MtrunA17_Chr8g0354351 25.769 260 177 8 9 265 7 253 4.63e-19 86.7
Msa0088830 MtrunA17_Chr8g0354411 28.497 193 128 6 75 265 74 258 9.73e-19 84.0
Msa0088830 MtrunA17_Chr8g0354341 32.240 183 113 6 75 255 73 246 7.60e-18 80.9
Msa0088830 MtrunA17_Chr1g0206251 34.254 181 107 7 82 254 333 509 2.23e-17 81.3
Msa0088830 MtrunA17_Chr1g0206251 27.344 256 168 9 11 256 19 266 5.85e-13 68.2
Msa0088830 MtrunA17_Chr3g0119041 29.187 209 127 7 68 259 63 267 7.47e-17 80.1
Msa0088830 MtrunA17_Chr1g0206421 29.333 150 95 4 80 220 5 152 1.26e-16 79.3
Msa0088830 MtrunA17_Chr2g0280391 25.523 239 166 7 25 262 27 254 6.03e-16 75.9
Msa0088830 MtrunA17_Chr2g0280361 26.778 239 158 7 25 262 27 249 6.54e-16 75.5
Msa0088830 MtrunA17_Chr1g0206411 53.448 58 27 0 65 122 4 61 6.31e-15 68.6
Msa0088830 MtrunA17_Chr8g0354431 24.324 259 186 6 9 265 8 258 3.84e-13 68.9
Msa0088830 MtrunA17_Chr8g0354281 22.368 228 163 8 32 255 30 247 2.89e-12 66.2
Msa0088830 MtrunA17_Chr2g0280381 25.359 209 144 5 55 262 51 248 3.86e-11 62.0
Msa0088830 MtrunA17_Chr1g0206541 45.455 55 29 1 208 262 19 72 7.56e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088830 AT4G21410.2 36.719 256 152 6 13 265 13 261 1.57e-42 152
Msa0088830 AT4G21410.3 36.719 256 152 6 13 265 13 261 5.16e-42 152
Msa0088830 AT4G38830.1 37.273 220 132 5 39 256 32 247 5.15e-37 138
Msa0088830 AT4G05200.1 36.145 249 139 9 11 254 15 248 1.15e-36 137
Msa0088830 AT4G05200.2 36.145 249 139 9 11 254 33 266 1.15e-36 137
Msa0088830 AT4G21400.3 34.667 225 142 4 43 265 42 263 4.70e-36 134
Msa0088830 AT4G21400.6 34.667 225 142 4 43 265 42 263 5.93e-36 134
Msa0088830 AT4G21400.4 34.667 225 142 4 43 265 42 263 5.93e-36 134
Msa0088830 AT4G21400.5 34.667 225 142 4 43 265 42 263 5.93e-36 134
Msa0088830 AT4G21400.2 33.071 254 163 5 14 265 15 263 1.12e-35 134
Msa0088830 AT3G22060.1 32.114 246 159 4 3 248 7 244 1.21e-35 128
Msa0088830 AT4G21400.1 33.071 254 163 5 14 265 15 263 1.47e-35 134
Msa0088830 AT4G21400.7 35.829 187 116 3 80 265 54 237 4.90e-32 124
Msa0088830 AT4G23170.1 38.426 216 118 8 45 254 39 245 6.45e-32 119
Msa0088830 AT4G23220.1 32.692 208 138 2 43 248 29 236 3.86e-31 122
Msa0088830 AT4G00970.2 38.835 206 114 6 53 254 65 262 3.97e-31 121
Msa0088830 AT4G00970.1 38.835 206 114 6 53 254 65 262 6.68e-31 121
Msa0088830 AT4G21230.1 37.273 220 117 9 41 254 37 241 6.95e-31 121
Msa0088830 AT4G23180.3 36.752 234 132 9 29 258 36 257 1.85e-30 119
Msa0088830 AT4G23180.2 36.752 234 132 9 29 258 36 257 3.12e-30 119
Msa0088830 AT4G23180.1 36.752 234 132 9 29 258 36 257 3.83e-30 119
Msa0088830 AT4G23280.3 37.383 214 122 6 44 254 38 242 4.35e-30 119
Msa0088830 AT4G23280.1 37.383 214 122 6 44 254 38 242 4.66e-30 119
Msa0088830 AT4G23160.3 37.220 223 127 7 41 258 632 846 5.24e-30 119
Msa0088830 AT4G23160.2 37.220 223 127 7 41 258 632 846 5.24e-30 119
Msa0088830 AT4G23280.2 37.383 214 122 6 44 254 38 242 5.68e-30 118
Msa0088830 AT4G23160.1 37.220 223 127 7 41 258 52 266 7.11e-30 118
Msa0088830 AT4G23150.1 35.146 239 142 7 24 258 20 249 1.03e-29 117
Msa0088830 AT4G23130.3 35.577 208 123 7 51 255 46 245 7.31e-29 115
Msa0088830 AT4G23130.2 35.577 208 123 7 51 255 46 245 1.01e-28 115
Msa0088830 AT4G23130.1 35.577 208 123 7 51 255 46 245 1.07e-28 115
Msa0088830 AT2G31620.1 30.942 223 141 6 40 256 40 255 3.37e-28 108
Msa0088830 AT4G23210.3 32.589 224 130 6 40 248 29 246 3.85e-28 113
Msa0088830 AT4G23210.2 32.589 224 130 6 40 248 29 246 4.20e-28 112
Msa0088830 AT4G23210.4 32.589 224 130 6 40 248 29 246 4.20e-28 112
Msa0088830 AT4G23200.2 29.524 210 142 2 45 248 30 239 4.46e-28 112
Msa0088830 AT4G23210.5 32.589 224 130 6 40 248 29 246 5.12e-28 112
Msa0088830 AT4G23210.1 32.589 224 130 6 40 248 29 246 5.22e-28 112
Msa0088830 AT4G23300.1 32.735 223 129 6 41 248 30 246 6.28e-28 112
Msa0088830 AT4G23200.1 29.524 210 142 2 45 248 30 239 7.11e-28 112
Msa0088830 AT4G23140.2 35.176 199 115 6 65 258 61 250 5.35e-27 110
Msa0088830 AT4G23140.1 35.176 199 115 6 65 258 61 250 5.96e-27 110
Msa0088830 AT4G11521.1 29.333 225 146 3 32 248 18 237 2.41e-26 103
Msa0088830 AT4G11460.1 31.651 218 134 5 43 248 32 246 6.89e-26 107
Msa0088830 AT4G11460.3 31.651 218 134 5 43 248 32 246 7.28e-26 106
Msa0088830 AT4G11530.1 26.908 249 162 4 9 248 5 242 2.74e-25 105
Msa0088830 AT3G45860.1 37.186 199 109 7 65 258 64 251 3.42e-25 104
Msa0088830 AT4G23230.1 34.135 208 124 7 51 254 43 241 2.46e-24 102
Msa0088830 AT5G41290.1 29.555 247 155 8 12 249 7 243 2.71e-24 99.0
Msa0088830 AT3G21960.1 27.490 251 171 6 3 248 11 255 7.61e-24 97.4
Msa0088830 AT4G23270.2 32.540 252 152 10 7 254 3 240 9.14e-24 100
Msa0088830 AT4G23270.1 32.540 252 152 10 7 254 3 240 9.14e-24 100
Msa0088830 AT4G23190.1 31.818 220 137 6 39 248 28 244 9.49e-24 100
Msa0088830 AT4G23270.3 32.540 252 152 10 7 254 3 240 9.79e-24 100
Msa0088830 AT4G23190.2 32.110 218 135 6 41 248 30 244 1.49e-23 100
Msa0088830 AT4G20640.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT4G20630.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT4G20580.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT4G20600.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT4G20620.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT4G20610.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT4G20590.1 27.711 249 169 5 5 248 7 249 5.31e-23 95.1
Msa0088830 AT3G58310.1 26.556 241 171 4 9 248 14 249 5.93e-23 94.7
Msa0088830 AT4G20570.1 27.711 249 169 5 5 248 21 263 7.22e-23 94.7
Msa0088830 AT4G20560.1 27.711 249 169 5 5 248 21 263 7.22e-23 94.7
Msa0088830 AT4G20540.1 27.711 249 169 5 5 248 21 263 7.22e-23 94.7
Msa0088830 AT4G20645.1 27.711 249 169 5 5 248 21 263 7.22e-23 94.7
Msa0088830 AT4G20530.1 27.711 249 169 5 5 248 21 263 7.22e-23 94.7
Msa0088830 AT4G20550.1 27.711 249 169 5 5 248 21 263 7.22e-23 94.7
Msa0088830 AT4G20670.1 27.711 249 169 5 5 248 7 249 7.23e-23 94.7
Msa0088830 AT1G61750.1 30.660 212 139 6 43 251 38 244 2.27e-22 94.7
Msa0088830 AT4G11490.1 30.415 217 143 3 38 248 27 241 2.43e-22 96.7
Msa0088830 AT4G21410.1 40.580 138 78 3 130 265 1 136 2.59e-22 96.3
Msa0088830 AT4G23240.1 29.630 216 145 4 43 254 33 245 2.92e-22 96.3
Msa0088830 AT3G21990.1 26.908 249 171 5 5 248 7 249 4.35e-22 92.4
Msa0088830 AT4G23250.1 28.448 232 148 6 36 254 30 256 6.32e-22 95.5
Msa0088830 AT4G23250.3 28.448 232 148 6 36 254 30 256 7.22e-22 95.1
Msa0088830 AT4G23250.2 28.448 232 148 6 36 254 30 256 7.79e-22 95.1
Msa0088830 AT4G23250.2 27.358 212 129 5 43 254 733 919 9.08e-14 71.6
Msa0088830 AT4G23310.1 33.005 203 123 6 50 248 157 350 2.82e-21 93.6
Msa0088830 AT4G23310.2 33.005 203 123 6 50 248 157 350 3.38e-21 93.2
Msa0088830 AT4G04500.2 31.731 208 127 5 61 255 49 254 1.34e-20 91.3
Msa0088830 AT4G04500.3 31.731 208 127 5 61 255 49 254 1.34e-20 91.3
Msa0088830 AT4G04500.1 31.731 208 127 5 61 255 49 254 1.54e-20 91.3
Msa0088830 AT4G21400.8 37.226 137 84 2 130 265 1 136 1.58e-20 91.3
Msa0088830 AT3G21910.1 28.634 227 148 7 42 258 48 270 1.98e-20 88.6
Msa0088830 AT4G23260.2 28.636 220 149 5 36 249 30 247 2.62e-20 90.5
Msa0088830 AT4G23260.1 28.636 220 149 5 36 249 30 247 3.31e-20 90.1
Msa0088830 AT5G48540.1 29.032 248 159 7 13 256 9 243 3.48e-20 87.4
Msa0088830 AT3G21920.1 30.204 245 141 11 32 258 40 272 3.57e-20 87.8
Msa0088830 AT3G21920.2 30.204 245 141 11 32 258 62 294 4.05e-20 88.2
Msa0088830 AT1G63600.1 28.054 221 149 4 35 250 39 254 9.95e-20 87.4
Msa0088830 AT1G63580.1 29.469 207 139 5 49 250 35 239 1.02e-19 86.3
Msa0088830 AT1G63550.1 28.972 214 145 4 40 250 37 246 1.10e-19 87.0
Msa0088830 AT3G21930.1 29.084 251 148 11 32 264 40 278 1.13e-19 86.3
Msa0088830 AT3G22040.1 28.295 258 158 9 4 248 7 250 1.25e-19 85.9
Msa0088830 AT1G63570.3 26.000 250 170 5 3 249 4 241 1.10e-18 84.0
Msa0088830 AT1G63570.1 26.000 250 170 5 3 249 4 241 1.10e-18 84.0
Msa0088830 AT1G63570.2 26.000 250 170 5 3 249 57 294 1.68e-18 84.0
Msa0088830 AT5G41300.1 26.531 245 171 4 6 247 7 245 2.06e-18 83.2
Msa0088830 AT4G11460.2 31.609 174 104 5 87 248 1 171 3.90e-18 84.3
Msa0088830 AT3G29050.2 27.372 274 175 9 4 258 10 278 1.71e-17 80.5
Msa0088830 AT5G41280.1 27.935 247 160 6 12 249 7 244 3.21e-17 79.7
Msa0088830 AT4G11480.2 22.927 205 149 3 50 250 37 236 8.00e-17 80.1
Msa0088830 AT4G11480.4 22.927 205 149 3 50 250 37 236 8.35e-17 80.1
Msa0088830 AT3G21940.1 29.091 275 162 12 2 255 12 274 8.70e-17 78.6
Msa0088830 AT4G11480.3 22.927 205 149 3 50 250 37 236 9.63e-17 80.1
Msa0088830 AT4G11480.1 22.927 205 149 3 50 250 37 236 9.84e-17 80.1
Msa0088830 AT4G11470.2 25.701 214 144 6 51 254 43 251 1.24e-16 79.7
Msa0088830 AT4G11470.1 25.701 214 144 6 51 254 38 246 1.26e-16 79.7
Msa0088830 AT4G23190.3 31.361 169 104 5 89 248 1 166 1.83e-16 79.3
Msa0088830 AT4G23190.4 31.361 169 104 5 89 248 1 166 1.83e-16 79.3
Msa0088830 AT3G21940.2 30.556 180 106 4 92 255 3 179 2.06e-16 75.5
Msa0088830 AT3G22010.1 27.928 222 132 9 42 248 48 256 1.52e-15 74.7
Msa0088830 AT4G20680.1 28.342 187 123 5 71 248 76 260 5.64e-15 73.2
Msa0088830 AT4G04570.1 27.179 195 132 4 68 254 59 251 1.49e-14 73.6
Msa0088830 AT4G04570.2 27.179 195 132 4 68 254 59 251 1.71e-14 73.6
Msa0088830 AT3G21900.2 25.481 208 146 4 41 248 45 243 2.35e-14 71.2
Msa0088830 AT3G22050.1 26.941 219 134 6 43 248 46 251 3.53e-14 70.9
Msa0088830 AT1G63590.1 25.405 185 131 3 71 250 64 246 4.64e-14 70.5
Msa0088830 AT4G23290.2 27.805 205 138 6 51 248 41 242 9.70e-14 71.2
Msa0088830 AT4G04510.1 28.283 198 119 6 71 254 60 248 1.21e-13 70.9
Msa0088830 AT4G04510.2 28.283 198 119 6 71 254 62 250 1.28e-13 70.9
Msa0088830 AT3G22000.1 25.498 251 172 8 8 248 15 260 2.06e-13 68.9
Msa0088830 AT1G70690.1 27.805 205 124 8 49 248 48 233 4.44e-13 68.2
Msa0088830 AT4G04540.4 23.556 225 157 6 43 254 32 254 9.43e-13 68.2
Msa0088830 AT4G04540.1 23.556 225 157 6 43 254 32 254 1.53e-12 67.8
Msa0088830 AT4G04540.3 23.556 225 157 6 43 254 32 254 1.79e-12 67.4
Msa0088830 AT4G04540.2 23.556 225 157 6 43 254 32 254 1.93e-12 67.4
Msa0088830 AT3G21970.1 26.786 224 144 7 39 248 40 257 2.55e-12 65.9
Msa0088830 AT4G04490.1 26.126 222 131 7 50 253 40 246 3.61e-12 66.6
Msa0088830 AT2G01660.2 23.810 252 154 11 10 249 6 231 2.89e-11 62.8
Msa0088830 AT2G01660.3 24.000 250 152 11 10 247 6 229 4.52e-11 62.4
Msa0088830 AT2G01660.1 24.000 250 152 11 10 247 6 229 4.69e-11 62.4
Msa0088830 AT3G21900.1 24.038 208 141 4 41 248 45 235 5.31e-11 61.6

Find 48 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAGGCCTAAACGAAAT+TGG 0.229067 1_2:-70003223 Msa0088830:CDS
TATTCAGACCGTTCTATATT+AGG 0.252445 1_2:-70003238 Msa0088830:CDS
AGTTACCTCTATCGTTATTT+TGG 0.283454 1_2:+70003524 None:intergenic
GGCAGATCAATTTAATATCT+TGG 0.285791 1_2:-70003161 Msa0088830:CDS
CGTTTACTTTGTCATTGTTT+TGG 0.299429 1_2:+70003401 None:intergenic
CTATCAACCTAAAGCAAAAC+TGG 0.325641 1_2:-70002876 Msa0088830:CDS
TTTCAAGATGTTGTAGCAAT+AGG 0.335675 1_2:-70002958 Msa0088830:CDS
TTGCTTTAGGTTGATAGAAT+TGG 0.343077 1_2:+70002882 None:intergenic
TTAAGAAGCAAGGCTATAAA+TGG 0.352413 1_2:-70003118 Msa0088830:CDS
TTGGTCGTTGTTGTCTGCTT+GGG 0.365814 1_2:+70003567 None:intergenic
AAGCAGGTCCAATTTCGTTT+AGG 0.394951 1_2:+70003215 None:intergenic
AGTAGTAATCAAATAATATA+TGG 0.412356 1_2:-70003052 Msa0088830:CDS
TTAGACCAAGCTGTAATTTG+AGG 0.412757 1_2:-70002919 Msa0088830:CDS
TTTGGTCGTTGTTGTCTGCT+TGG 0.426348 1_2:+70003566 None:intergenic
GATAATTATGAGAAAGAGAA+AGG 0.435798 1_2:+70003606 None:intergenic
CAGTGTACACCTGACTTGTC+TGG 0.440744 1_2:-70003022 Msa0088830:CDS
TGCTTGTGTGAGATTGAATC+TGG 0.442950 1_2:+70003318 None:intergenic
AATGACAAAGTAAACGTCAT+TGG 0.446473 1_2:-70003394 Msa0088830:CDS
AGGCATTTGCGACAATCATC+AGG 0.449621 1_2:+70003349 None:intergenic
TCACATCGTAAGTATGTTGT+AGG 0.450527 1_2:-70003091 Msa0088830:CDS
TGCGACCAAAATAACGATAG+AGG 0.460057 1_2:-70003529 Msa0088830:CDS
CTTGGGGTTTAGATGTGAAA+AGG 0.460200 1_2:+70003584 None:intergenic
TATATTATTTGATTACTACT+AGG 0.467816 1_2:+70003055 None:intergenic
GATAGAGGTAACTACATAAC+CGG 0.483653 1_2:-70003514 Msa0088830:CDS
TGAGAAAGAGAAAGGAGAGT+GGG 0.486566 1_2:+70003614 None:intergenic
TCAAACCTCAAATTACAGCT+TGG 0.526400 1_2:+70002914 None:intergenic
ATTGAATGATTTAAGAAGCA+AGG 0.526753 1_2:-70003128 Msa0088830:CDS
AGATGTTGTAGCAATAGGAT+TGG 0.527777 1_2:-70002953 Msa0088830:CDS
CACTGGGGACCAGACAAGTC+AGG 0.531473 1_2:+70003013 None:intergenic
GAGCAATTCTGAGGCTGTTG+TGG 0.536469 1_2:+70003482 None:intergenic
GATTGTCGCAAATGCCTAGT+TGG 0.540455 1_2:-70003343 Msa0088830:CDS
ATGAGAAAGAGAAAGGAGAG+TGG 0.541993 1_2:+70003613 None:intergenic
GCTGTTGTGGTAGGTATCAC+CGG 0.542628 1_2:+70003495 None:intergenic
AAGTTCCATGCAAAATAAGC+AGG 0.549615 1_2:+70003199 None:intergenic
CGTTTAGGCCTAATATAGAA+CGG 0.560797 1_2:+70003230 None:intergenic
GAACTTGAACAATGCAACAA+TGG 0.575248 1_2:-70003182 Msa0088830:CDS
GATTGAATCTGGAACCAACT+AGG 0.575788 1_2:+70003329 None:intergenic
TGGTCGTTGTTGTCTGCTTG+GGG 0.575882 1_2:+70003568 None:intergenic
AATTCTGAGGCTGTTGTGGT+AGG 0.584609 1_2:+70003486 None:intergenic
AAGCAAACAATCATCACACT+GGG 0.585932 1_2:+70002997 None:intergenic
GAAGCAAACAATCATCACAC+TGG 0.591047 1_2:+70002996 None:intergenic
TATGTTGTAGGAACAATGAC+GGG 0.594989 1_2:-70003079 Msa0088830:CDS
GTATGTTGTAGGAACAATGA+CGG 0.611472 1_2:-70003080 Msa0088830:CDS
AACGTCATTGGAATATGTAG+AGG 0.614721 1_2:-70003382 Msa0088830:CDS
GGTTTCTACAACAGCAACAA+TGG 0.624522 1_2:-70003424 Msa0088830:CDS
AGAAGCAATTGGATGGTACG+AGG 0.670531 1_2:-70003281 Msa0088830:CDS
GGGAGATTAGAGCAATTCTG+AGG 0.693843 1_2:+70003473 None:intergenic
AGCAAACAATCATCACACTG+GGG 0.800516 1_2:+70002998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTATTTGATTACTACT+AGG + chr1_2:70003441-70003460 None:intergenic 15.0%
!! AGTAGTAATCAAATAATATA+TGG - chr1_2:70003441-70003460 Msa0088830:CDS 15.0%
!! TATATTATTTGATTACTACT+AGG + chr1_2:70003441-70003460 None:intergenic 15.0%
!! AGTAGTAATCAAATAATATA+TGG - chr1_2:70003441-70003460 Msa0088830:CDS 15.0%
! GATAATTATGAGAAAGAGAA+AGG + chr1_2:70002890-70002909 None:intergenic 25.0%
!!! AATTTTTGAGTTGTAAGTGA+GGG + chr1_2:70003043-70003062 None:intergenic 25.0%
! TACAACTCAAAAATTGACTA+CGG - chr1_2:70003048-70003067 Msa0088830:CDS 25.0%
!!! CCAATTGCTTCTTTTTTATT+TGG + chr1_2:70003204-70003223 None:intergenic 25.0%
! CCAAATAAAAAAGAAGCAAT+TGG - chr1_2:70003201-70003220 Msa0088830:CDS 25.0%
! ATAAAAAAGAAGCAATTGGA+TGG - chr1_2:70003205-70003224 Msa0088830:CDS 25.0%
! ATTGAATGATTTAAGAAGCA+AGG - chr1_2:70003365-70003384 Msa0088830:CDS 25.0%
! GATAATTATGAGAAAGAGAA+AGG + chr1_2:70002890-70002909 None:intergenic 25.0%
!!! AATTTTTGAGTTGTAAGTGA+GGG + chr1_2:70003043-70003062 None:intergenic 25.0%
! TACAACTCAAAAATTGACTA+CGG - chr1_2:70003048-70003067 Msa0088830:CDS 25.0%
!!! CCAATTGCTTCTTTTTTATT+TGG + chr1_2:70003204-70003223 None:intergenic 25.0%
! CCAAATAAAAAAGAAGCAAT+TGG - chr1_2:70003201-70003220 Msa0088830:CDS 25.0%
! ATAAAAAAGAAGCAATTGGA+TGG - chr1_2:70003205-70003224 Msa0088830:CDS 25.0%
! ATTGAATGATTTAAGAAGCA+AGG - chr1_2:70003365-70003384 Msa0088830:CDS 25.0%
! CGCAAAAGTAGTGAAATTTT+TGG + chr1_2:70002948-70002967 None:intergenic 30.0%
! AGTTACCTCTATCGTTATTT+TGG + chr1_2:70002972-70002991 None:intergenic 30.0%
!!! CAATTTTTGAGTTGTAAGTG+AGG + chr1_2:70003044-70003063 None:intergenic 30.0%
! CGTTTACTTTGTCATTGTTT+TGG + chr1_2:70003095-70003114 None:intergenic 30.0%
AATGACAAAGTAAACGTCAT+TGG - chr1_2:70003099-70003118 Msa0088830:CDS 30.0%
TATTCAGACCGTTCTATATT+AGG - chr1_2:70003255-70003274 Msa0088830:CDS 30.0%
ATATTAGGCCTAAACGAAAT+TGG - chr1_2:70003270-70003289 Msa0088830:CDS 30.0%
GGCAGATCAATTTAATATCT+TGG - chr1_2:70003332-70003351 Msa0088830:CDS 30.0%
TTAAGAAGCAAGGCTATAAA+TGG - chr1_2:70003375-70003394 Msa0088830:CDS 30.0%
TTTCAAGATGTTGTAGCAAT+AGG - chr1_2:70003535-70003554 Msa0088830:CDS 30.0%
!! TTGCTTTAGGTTGATAGAAT+TGG + chr1_2:70003614-70003633 None:intergenic 30.0%
! CGCAAAAGTAGTGAAATTTT+TGG + chr1_2:70002948-70002967 None:intergenic 30.0%
! AGTTACCTCTATCGTTATTT+TGG + chr1_2:70002972-70002991 None:intergenic 30.0%
!!! CAATTTTTGAGTTGTAAGTG+AGG + chr1_2:70003044-70003063 None:intergenic 30.0%
! CGTTTACTTTGTCATTGTTT+TGG + chr1_2:70003095-70003114 None:intergenic 30.0%
AATGACAAAGTAAACGTCAT+TGG - chr1_2:70003099-70003118 Msa0088830:CDS 30.0%
TATTCAGACCGTTCTATATT+AGG - chr1_2:70003255-70003274 Msa0088830:CDS 30.0%
ATATTAGGCCTAAACGAAAT+TGG - chr1_2:70003270-70003289 Msa0088830:CDS 30.0%
GGCAGATCAATTTAATATCT+TGG - chr1_2:70003332-70003351 Msa0088830:CDS 30.0%
TTAAGAAGCAAGGCTATAAA+TGG - chr1_2:70003375-70003394 Msa0088830:CDS 30.0%
TTTCAAGATGTTGTAGCAAT+AGG - chr1_2:70003535-70003554 Msa0088830:CDS 30.0%
!! TTGCTTTAGGTTGATAGAAT+TGG + chr1_2:70003614-70003633 None:intergenic 30.0%
GATAGAGGTAACTACATAAC+CGG - chr1_2:70002979-70002998 Msa0088830:CDS 35.0%
AACGTCATTGGAATATGTAG+AGG - chr1_2:70003111-70003130 Msa0088830:CDS 35.0%
CGTTTAGGCCTAATATAGAA+CGG + chr1_2:70003266-70003285 None:intergenic 35.0%
AAGTTCCATGCAAAATAAGC+AGG + chr1_2:70003297-70003316 None:intergenic 35.0%
GAACTTGAACAATGCAACAA+TGG - chr1_2:70003311-70003330 Msa0088830:CDS 35.0%
TCACATCGTAAGTATGTTGT+AGG - chr1_2:70003402-70003421 Msa0088830:CDS 35.0%
GTATGTTGTAGGAACAATGA+CGG - chr1_2:70003413-70003432 Msa0088830:CDS 35.0%
TATGTTGTAGGAACAATGAC+GGG - chr1_2:70003414-70003433 Msa0088830:CDS 35.0%
AAGCAAACAATCATCACACT+GGG + chr1_2:70003499-70003518 None:intergenic 35.0%
AGATGTTGTAGCAATAGGAT+TGG - chr1_2:70003540-70003559 Msa0088830:CDS 35.0%
TTAGACCAAGCTGTAATTTG+AGG - chr1_2:70003574-70003593 Msa0088830:CDS 35.0%
TCAAACCTCAAATTACAGCT+TGG + chr1_2:70003582-70003601 None:intergenic 35.0%
CTATCAACCTAAAGCAAAAC+TGG - chr1_2:70003617-70003636 Msa0088830:CDS 35.0%
GATAGAGGTAACTACATAAC+CGG - chr1_2:70002979-70002998 Msa0088830:CDS 35.0%
AACGTCATTGGAATATGTAG+AGG - chr1_2:70003111-70003130 Msa0088830:CDS 35.0%
CGTTTAGGCCTAATATAGAA+CGG + chr1_2:70003266-70003285 None:intergenic 35.0%
AAGTTCCATGCAAAATAAGC+AGG + chr1_2:70003297-70003316 None:intergenic 35.0%
GAACTTGAACAATGCAACAA+TGG - chr1_2:70003311-70003330 Msa0088830:CDS 35.0%
TCACATCGTAAGTATGTTGT+AGG - chr1_2:70003402-70003421 Msa0088830:CDS 35.0%
GTATGTTGTAGGAACAATGA+CGG - chr1_2:70003413-70003432 Msa0088830:CDS 35.0%
TATGTTGTAGGAACAATGAC+GGG - chr1_2:70003414-70003433 Msa0088830:CDS 35.0%
AAGCAAACAATCATCACACT+GGG + chr1_2:70003499-70003518 None:intergenic 35.0%
AGATGTTGTAGCAATAGGAT+TGG - chr1_2:70003540-70003559 Msa0088830:CDS 35.0%
TTAGACCAAGCTGTAATTTG+AGG - chr1_2:70003574-70003593 Msa0088830:CDS 35.0%
TCAAACCTCAAATTACAGCT+TGG + chr1_2:70003582-70003601 None:intergenic 35.0%
CTATCAACCTAAAGCAAAAC+TGG - chr1_2:70003617-70003636 Msa0088830:CDS 35.0%
TGAGAAAGAGAAAGGAGAGT+GGG + chr1_2:70002882-70002901 None:intergenic 40.0%
ATGAGAAAGAGAAAGGAGAG+TGG + chr1_2:70002883-70002902 None:intergenic 40.0%
CTTGGGGTTTAGATGTGAAA+AGG + chr1_2:70002912-70002931 None:intergenic 40.0%
TGCGACCAAAATAACGATAG+AGG - chr1_2:70002964-70002983 Msa0088830:CDS 40.0%
GGTTTCTACAACAGCAACAA+TGG - chr1_2:70003069-70003088 Msa0088830:CDS 40.0%
! GATTGAATCTGGAACCAACT+AGG + chr1_2:70003167-70003186 None:intergenic 40.0%
TGCTTGTGTGAGATTGAATC+TGG + chr1_2:70003178-70003197 None:intergenic 40.0%
AAGCAGGTCCAATTTCGTTT+AGG + chr1_2:70003281-70003300 None:intergenic 40.0%
!!! TTGGACCTGCTTATTTTGCA+TGG - chr1_2:70003289-70003308 Msa0088830:CDS 40.0%
AGCAAACAATCATCACACTG+GGG + chr1_2:70003498-70003517 None:intergenic 40.0%
GAAGCAAACAATCATCACAC+TGG + chr1_2:70003500-70003519 None:intergenic 40.0%
! TGTGAAGCCAGTTTTGCTTT+AGG + chr1_2:70003627-70003646 None:intergenic 40.0%
TGAGAAAGAGAAAGGAGAGT+GGG + chr1_2:70002882-70002901 None:intergenic 40.0%
ATGAGAAAGAGAAAGGAGAG+TGG + chr1_2:70002883-70002902 None:intergenic 40.0%
CTTGGGGTTTAGATGTGAAA+AGG + chr1_2:70002912-70002931 None:intergenic 40.0%
TGCGACCAAAATAACGATAG+AGG - chr1_2:70002964-70002983 Msa0088830:CDS 40.0%
GGTTTCTACAACAGCAACAA+TGG - chr1_2:70003069-70003088 Msa0088830:CDS 40.0%
! GATTGAATCTGGAACCAACT+AGG + chr1_2:70003167-70003186 None:intergenic 40.0%
TGCTTGTGTGAGATTGAATC+TGG + chr1_2:70003178-70003197 None:intergenic 40.0%
AAGCAGGTCCAATTTCGTTT+AGG + chr1_2:70003281-70003300 None:intergenic 40.0%
!!! TTGGACCTGCTTATTTTGCA+TGG - chr1_2:70003289-70003308 Msa0088830:CDS 40.0%
AGCAAACAATCATCACACTG+GGG + chr1_2:70003498-70003517 None:intergenic 40.0%
GAAGCAAACAATCATCACAC+TGG + chr1_2:70003500-70003519 None:intergenic 40.0%
! TGTGAAGCCAGTTTTGCTTT+AGG + chr1_2:70003627-70003646 None:intergenic 40.0%
TTGGTCGTTGTTGTCTGCTT+GGG + chr1_2:70002929-70002948 None:intergenic 45.0%
TTTGGTCGTTGTTGTCTGCT+TGG + chr1_2:70002930-70002949 None:intergenic 45.0%
!! AATTCTGAGGCTGTTGTGGT+AGG + chr1_2:70003010-70003029 None:intergenic 45.0%
GGGAGATTAGAGCAATTCTG+AGG + chr1_2:70003023-70003042 None:intergenic 45.0%
AGGCATTTGCGACAATCATC+AGG + chr1_2:70003147-70003166 None:intergenic 45.0%
GATTGTCGCAAATGCCTAGT+TGG - chr1_2:70003150-70003169 Msa0088830:CDS 45.0%
AGAAGCAATTGGATGGTACG+AGG - chr1_2:70003212-70003231 Msa0088830:CDS 45.0%
TTGGTCGTTGTTGTCTGCTT+GGG + chr1_2:70002929-70002948 None:intergenic 45.0%
TTTGGTCGTTGTTGTCTGCT+TGG + chr1_2:70002930-70002949 None:intergenic 45.0%
!! AATTCTGAGGCTGTTGTGGT+AGG + chr1_2:70003010-70003029 None:intergenic 45.0%
GGGAGATTAGAGCAATTCTG+AGG + chr1_2:70003023-70003042 None:intergenic 45.0%
AGGCATTTGCGACAATCATC+AGG + chr1_2:70003147-70003166 None:intergenic 45.0%
GATTGTCGCAAATGCCTAGT+TGG - chr1_2:70003150-70003169 Msa0088830:CDS 45.0%
AGAAGCAATTGGATGGTACG+AGG - chr1_2:70003212-70003231 Msa0088830:CDS 45.0%
TGGTCGTTGTTGTCTGCTTG+GGG + chr1_2:70002928-70002947 None:intergenic 50.0%
GCTGTTGTGGTAGGTATCAC+CGG + chr1_2:70003001-70003020 None:intergenic 50.0%
!! GAGCAATTCTGAGGCTGTTG+TGG + chr1_2:70003014-70003033 None:intergenic 50.0%
! CAGTGTACACCTGACTTGTC+TGG - chr1_2:70003471-70003490 Msa0088830:CDS 50.0%
TGGTCGTTGTTGTCTGCTTG+GGG + chr1_2:70002928-70002947 None:intergenic 50.0%
GCTGTTGTGGTAGGTATCAC+CGG + chr1_2:70003001-70003020 None:intergenic 50.0%
!! GAGCAATTCTGAGGCTGTTG+TGG + chr1_2:70003014-70003033 None:intergenic 50.0%
! CAGTGTACACCTGACTTGTC+TGG - chr1_2:70003471-70003490 Msa0088830:CDS 50.0%
CACTGGGGACCAGACAAGTC+AGG + chr1_2:70003483-70003502 None:intergenic 60.0%
CACTGGGGACCAGACAAGTC+AGG + chr1_2:70003483-70003502 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 70002859 70003656 70002859 ID=Msa0088830;Name=Msa0088830
chr1_2 mRNA 70002859 70003656 70002859 ID=Msa0088830-mRNA-1;Parent=Msa0088830;Name=Msa0088830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|265
chr1_2 exon 70002859 70003656 70002859 ID=Msa0088830-mRNA-1:exon:24099;Parent=Msa0088830-mRNA-1
chr1_2 CDS 70002859 70003656 70002859 ID=Msa0088830-mRNA-1:cds;Parent=Msa0088830-mRNA-1
Gene Sequence

>Msa0088830

ATGTCTATTCTCTCTTTAAGCCCACTCTCCTTTCTCTTTCTCATAATTATCCTTTTCACATCTAAACCCCAAGCAGACAACAACGACCAAAAATTTCACTACTTTTGCGACCAAAATAACGATAGAGGTAACTACATAACCGGTGATACCTACCACAACAGCCTCAGAATTGCTCTAATCTCCCTCACTTACAACTCAAAAATTGACTACGGTTTCTACAACAGCAACAATGGCCAAAACAATGACAAAGTAAACGTCATTGGAATATGTAGAGGAGACATTAATCCTGATGATTGTCGCAAATGCCTAGTTGGTTCCAGATTCAATCTCACACAAGCATGTCCAAATAAAAAAGAAGCAATTGGATGGTACGAGGATGAGAAATGCATGTTACGTTATTCAGACCGTTCTATATTAGGCCTAAACGAAATTGGACCTGCTTATTTTGCATGGAACTTGAACAATGCAACAATGGCAGATCAATTTAATATCTTGGTAAAACAACTATTGAATGATTTAAGAAGCAAGGCTATAAATGGTGATTCACATCGTAAGTATGTTGTAGGAACAATGACGGGTCCTAGTAGTAATCAAATAATATATGGTCTTGTTCAGTGTACACCTGACTTGTCTGGTCCCCAGTGTGATGATTGTTTGCTTCAATCTATTGCTGAAGTTTCAAGATGTTGTAGCAATAGGATTGGTGCTAGAATTGTTAGACCAAGCTGTAATTTGAGGTTTGAAACTTCATACCAATTCTATCAACCTAAAGCAAAACTGGCTTCACAACTCCCATGA

Protein sequence

>Msa0088830

MSILSLSPLSFLFLIIILFTSKPQADNNDQKFHYFCDQNNDRGNYITGDTYHNSLRIALISLTYNSKIDYGFYNSNNGQNNDKVNVIGICRGDINPDDCRKCLVGSRFNLTQACPNKKEAIGWYEDEKCMLRYSDRSILGLNEIGPAYFAWNLNNATMADQFNILVKQLLNDLRSKAINGDSHRKYVVGTMTGPSSNQIIYGLVQCTPDLSGPQCDDCLLQSIAEVSRCCSNRIGARIVRPSCNLRFETSYQFYQPKAKLASQLP*