Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089860 | KEH44035.1 | 85.315 | 286 | 6 | 2 | 1 | 286 | 1 | 250 | 3.25e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089860 | sp|Q852U6|RHY1A_ARATH | 36.860 | 293 | 128 | 5 | 1 | 281 | 1 | 248 | 2.05e-35 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089860 | A0A072W173 | 85.315 | 286 | 6 | 2 | 1 | 286 | 1 | 250 | 1.55e-166 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041870 | Msa0089860 | 0.931467 | 3.619906e-94 | -8.615850e-47 |
| Msa0089860 | Msa0136270 | 0.948790 | 4.678219e-107 | -8.615850e-47 |
| Msa0089860 | Msa0162680 | 0.818923 | 1.521443e-52 | -8.615850e-47 |
| Msa0089860 | Msa0460600 | 0.824947 | 6.124266e-54 | -8.615850e-47 |
| Msa0089860 | Msa0568110 | 0.802739 | 4.863377e-49 | -8.615850e-47 |
| Msa0089860 | Msa0570460 | 0.811151 | 8.079832e-51 | -8.615850e-47 |
| Msa0089860 | Msa0704560 | 0.850629 | 1.500945e-60 | -8.615850e-47 |
| Msa0089860 | Msa0967530 | 0.841480 | 4.633057e-58 | -8.615850e-47 |
| Msa0089860 | Msa1027910 | 0.815704 | 8.064047e-52 | -8.615850e-47 |
| Msa0089860 | Msa1084890 | 0.802111 | 6.550674e-49 | -8.615850e-47 |
| Msa0089860 | Msa1222400 | 0.802091 | 6.611583e-49 | -8.615850e-47 |
| Msa0089860 | Msa1264660 | 0.820753 | 5.807125e-53 | -8.615850e-47 |
| Msa0089860 | Msa1361710 | 0.823646 | 1.238421e-53 | -8.615850e-47 |
| Msa0089860 | Msa1406540 | 0.805212 | 1.488370e-49 | -8.615850e-47 |
| Msa0089860 | Msa1427000 | 0.845883 | 3.076467e-59 | -8.615850e-47 |
| Msa0089860 | Msa1439780 | 0.850315 | 1.838375e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089860 | MtrunA17_Chr1g0207561 | 85.315 | 286 | 6 | 2 | 1 | 286 | 1 | 250 | 2.99e-170 | 471 |
| Msa0089860 | MtrunA17_Chr2g0305161 | 58.333 | 48 | 20 | 0 | 234 | 281 | 140 | 187 | 1.25e-13 | 68.2 |
| Msa0089860 | MtrunA17_Chr1g0169651 | 47.917 | 48 | 25 | 0 | 234 | 281 | 681 | 728 | 2.83e-11 | 63.9 |
| Msa0089860 | MtrunA17_Chr7g0274741 | 33.333 | 81 | 53 | 1 | 207 | 286 | 70 | 150 | 8.31e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089860 | AT1G49850.1 | 36.860 | 293 | 128 | 5 | 1 | 281 | 1 | 248 | 2.09e-36 | 130 |
| Msa0089860 | AT2G15580.1 | 59.091 | 44 | 18 | 0 | 234 | 277 | 148 | 191 | 7.02e-13 | 66.6 |
| Msa0089860 | AT1G20823.1 | 40.659 | 91 | 45 | 3 | 199 | 282 | 70 | 158 | 8.89e-12 | 63.5 |
| Msa0089860 | AT1G76410.1 | 38.462 | 91 | 47 | 3 | 200 | 283 | 64 | 152 | 8.01e-11 | 60.5 |
Find 98 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGTCCTGGTGGCTTTC+TGG | 0.124154 | 1_2:+71621470 | None:intergenic |
| ACTCTGCTTGTTTGGATCCT+TGG | 0.223649 | 1_2:-71621299 | Msa0089860:CDS |
| GCCACTGGTTCTCTCCTTCA+TGG | 0.270330 | 1_2:+71621037 | None:intergenic |
| TAAATTTCACTCTGCTTGTT+TGG | 0.285473 | 1_2:-71621307 | Msa0089860:CDS |
| CGTTGTAGTGGCGGCGGATA+CGG | 0.287251 | 1_2:+71623483 | None:intergenic |
| CTTTCACTTCCACTTGCTCT+TGG | 0.328518 | 1_2:+71623062 | None:intergenic |
| CTTCAAGATGCAAACAGTTC+AGG | 0.330884 | 1_2:+71621439 | None:intergenic |
| GTTGTAGTGGCGGCGGATAC+GGG | 0.339096 | 1_2:+71623484 | None:intergenic |
| ACTCACTCAATTACAACAAC+AGG | 0.363261 | 1_2:+71621089 | None:intergenic |
| CGATATCATTTCGTCCTAAT+CGG | 0.375748 | 1_2:+71623585 | None:intergenic |
| GCATTGTTTCATTCTATTGA+AGG | 0.376853 | 1_2:+71621220 | None:intergenic |
| ATCAGAATCCAAGGTACTTC+AGG | 0.378655 | 1_2:-71621394 | Msa0089860:CDS |
| GGGAGCCTGTTGATAGAAAC+AGG | 0.405614 | 1_2:-71622986 | Msa0089860:intron |
| AGGATAAAATATATGATGTA+AGG | 0.408762 | 1_2:-71621012 | Msa0089860:three_prime_UTR |
| TGAAACCTGTTTCTATCAAC+AGG | 0.414171 | 1_2:+71622981 | None:intergenic |
| GCGATACACTGCGACTCTTT+CGG | 0.415466 | 1_2:+71623658 | None:intergenic |
| ATTTATGTCCACATTGCAAA+TGG | 0.420763 | 1_2:+71621325 | None:intergenic |
| ACAACAGGGTTGAAAATACT+TGG | 0.424615 | 1_2:+71621104 | None:intergenic |
| CGCGCAAGTCTCACATCTAC+TGG | 0.427263 | 1_2:+71623035 | None:intergenic |
| TACTGACTTGACTTCTCAAA+TGG | 0.434814 | 1_2:-71621520 | Msa0089860:CDS |
| GTTCCTCTCACACTTTCTCC+AGG | 0.437499 | 1_2:+71623086 | None:intergenic |
| CGGTGGTGATGATGGAAATC+TGG | 0.449253 | 1_2:+71623536 | None:intergenic |
| CGTGTATCGGAAAGATTTGA+TGG | 0.453526 | 1_2:-71623149 | Msa0089860:CDS |
| TGGTTTGTTCATGCAAGAGC+TGG | 0.460636 | 1_2:+71621490 | None:intergenic |
| AGGGCCTCCTGAGTGAGTCC+TGG | 0.461922 | 1_2:+71621459 | None:intergenic |
| CATGGGAGCAAGGCATGTAT+TGG | 0.463348 | 1_2:+71621055 | None:intergenic |
| CCAAGGTACTTCAGGATTGT+GGG | 0.469017 | 1_2:-71621386 | Msa0089860:CDS |
| CAAGGATGCTGCAACGGAGC+TGG | 0.470411 | 1_2:-71621159 | Msa0089860:three_prime_UTR |
| TTCAAGATGCAAACAGTTCA+GGG | 0.472566 | 1_2:+71621440 | None:intergenic |
| GACTCCTTCAGAGGTTGAGA+GGG | 0.475373 | 1_2:-71623007 | Msa0089860:CDS |
| AAGGAGAGAACCAGTGGCAG+AGG | 0.476716 | 1_2:-71621032 | Msa0089860:three_prime_UTR |
| AATGAAGGCGGCGTTGAACC+TGG | 0.477109 | 1_2:-71623104 | Msa0089860:CDS |
| TTTGTATGTCACTGAGTCAC+TGG | 0.478097 | 1_2:-71622624 | Msa0089860:CDS |
| CCACTGGTTCTCTCCTTCAT+GGG | 0.481486 | 1_2:+71621038 | None:intergenic |
| CGTGAAGGCGGTGGTGATGA+TGG | 0.483202 | 1_2:+71623528 | None:intergenic |
| AGGGTACGTGGTGACGGAGG+CGG | 0.483634 | 1_2:+71623456 | None:intergenic |
| TCCAAGGTACTTCAGGATTG+TGG | 0.484189 | 1_2:-71621387 | Msa0089860:CDS |
| AGCAAGGCATGTATTGGCTC+CGG | 0.490893 | 1_2:+71621061 | None:intergenic |
| TCAGGATTGTGGGATATGCT+TGG | 0.490906 | 1_2:-71621376 | Msa0089860:CDS |
| CTTCAGAACTATTCCACATC+AGG | 0.492422 | 1_2:-71623613 | Msa0089860:CDS |
| GTAATTGAGTGAGTCGAAAC+CGG | 0.501618 | 1_2:-71621080 | Msa0089860:three_prime_UTR |
| GATATGCTTGGAATCTTTCG+TGG | 0.503539 | 1_2:-71621364 | Msa0089860:CDS |
| CTGGCTGACACAGATTCCCT+TGG | 0.506722 | 1_2:-71622605 | Msa0089860:CDS |
| ACTATACATCTTCGACAGTA+AGG | 0.510903 | 1_2:+71621255 | None:intergenic |
| TTCTCTCCTTCATGGGAGCA+AGG | 0.517548 | 1_2:+71621045 | None:intergenic |
| CCCACAATCCTGAAGTACCT+TGG | 0.517671 | 1_2:+71621386 | None:intergenic |
| CACATCAGGAGACACCGATT+AGG | 0.521300 | 1_2:-71623599 | Msa0089860:CDS |
| TGCTTGGAATCTTTCGTGGA+TGG | 0.531615 | 1_2:-71621360 | Msa0089860:CDS |
| GTAATTAAAGAGTCCTCAGT+TGG | 0.533031 | 1_2:+71621540 | None:intergenic |
| CGTCGGAGTCGTGAAGGCGG+TGG | 0.536072 | 1_2:+71623519 | None:intergenic |
| GTACGTGGTGACGGAGGCGG+CGG | 0.538987 | 1_2:+71623459 | None:intergenic |
| AGACTCCTTCAGAGGTTGAG+AGG | 0.543708 | 1_2:-71623008 | Msa0089860:CDS |
| GATCCTTGGATTCGCAGTTG+TGG | 0.545640 | 1_2:-71621285 | Msa0089860:CDS |
| CTAATCGGTGTCTCCTGATG+TGG | 0.556727 | 1_2:+71623600 | None:intergenic |
| GCCTCCTGAGTGAGTCCTGG+TGG | 0.559542 | 1_2:+71621462 | None:intergenic |
| GCTCCCCTCTCAACCTCTGA+AGG | 0.559895 | 1_2:+71623003 | None:intergenic |
| CGCGAGAAAGACTCCTTCAG+AGG | 0.559940 | 1_2:-71623016 | Msa0089860:CDS |
| AGAGGAACTCCAAGAGCAAG+TGG | 0.560537 | 1_2:-71623071 | Msa0089860:CDS |
| GGAGGCGGCGGACGTTGTAG+TGG | 0.563566 | 1_2:+71623471 | None:intergenic |
| GGCGGACGTTGTAGTGGCGG+CGG | 0.567742 | 1_2:+71623477 | None:intergenic |
| CGTCGATCTCTAGTAAATGA+AGG | 0.571288 | 1_2:-71623119 | Msa0089860:CDS |
| GGCGGCGGACGTTGTAGTGG+CGG | 0.571784 | 1_2:+71623474 | None:intergenic |
| AATCTGGAGAAGGTGAAGAG+TGG | 0.578304 | 1_2:+71623552 | None:intergenic |
| TCTCCACAACTGCGAATCCA+AGG | 0.579205 | 1_2:+71621282 | None:intergenic |
| TACATGCCTTGCTCCCATGA+AGG | 0.580805 | 1_2:-71621051 | Msa0089860:three_prime_UTR |
| ACAGGAAGGGTACGTGGTGA+CGG | 0.583288 | 1_2:+71623450 | None:intergenic |
| TTTACAGTATCGATTCTTCG+TGG | 0.585056 | 1_2:-71623719 | Msa0089860:five_prime_UTR |
| CTGTGTCAAGGATGCTGCAA+CGG | 0.589797 | 1_2:-71621165 | Msa0089860:three_prime_UTR |
| GGATAAAATATATGATGTAA+GGG | 0.591614 | 1_2:-71621011 | Msa0089860:three_prime_UTR |
| CATCGTCGTCGGAGTCGTGA+AGG | 0.593058 | 1_2:+71623513 | None:intergenic |
| TATCGGAAAGATTTGATGGA+AGG | 0.593860 | 1_2:-71623145 | Msa0089860:CDS |
| TGATAGAGATTCAGTGGACG+AGG | 0.594106 | 1_2:-71621592 | Msa0089860:CDS |
| TGATACGGAATCAGAATCCA+AGG | 0.596863 | 1_2:-71621403 | Msa0089860:CDS |
| AAAGCCACCAGGACTCACTC+AGG | 0.599767 | 1_2:-71621466 | Msa0089860:CDS |
| GAGTGAGTAACAAGGGACCA+AGG | 0.601959 | 1_2:+71622588 | None:intergenic |
| ACTTGACTTCTCAAATGGCA+AGG | 0.603031 | 1_2:-71621515 | Msa0089860:CDS |
| TGTTTGTTAGGAGCGTGTAT+CGG | 0.603047 | 1_2:-71623162 | Msa0089860:intron |
| GCAAAGTGATAGAGATTCAG+TGG | 0.604810 | 1_2:-71621598 | Msa0089860:CDS |
| AGTGAGTAACAAGGGACCAA+GGG | 0.604900 | 1_2:+71622589 | None:intergenic |
| CAACAGGGTTGAAAATACTT+GGG | 0.617860 | 1_2:+71621105 | None:intergenic |
| TACAAATGAGTGAGTAACAA+GGG | 0.628895 | 1_2:+71622581 | None:intergenic |
| CGTCGTCGGAGTCGTGAAGG+CGG | 0.629570 | 1_2:+71623516 | None:intergenic |
| GGAAGGGTACGTGGTGACGG+AGG | 0.634609 | 1_2:+71623453 | None:intergenic |
| GAACAAACCAGAAAGCCACC+AGG | 0.634998 | 1_2:-71621477 | Msa0089860:CDS |
| TTGTAGTGGCGGCGGATACG+GGG | 0.635138 | 1_2:+71623485 | None:intergenic |
| ACGGGGAGAATCATCGTCGT+CGG | 0.635388 | 1_2:+71623502 | None:intergenic |
| GAACCTGGAGAAAGTGTGAG+AGG | 0.649571 | 1_2:-71623089 | Msa0089860:CDS |
| CCCATGAAGGAGAGAACCAG+TGG | 0.652765 | 1_2:-71621038 | Msa0089860:three_prime_UTR |
| CTCACTCAATTACAACAACA+GGG | 0.657280 | 1_2:+71621090 | None:intergenic |
| TACACTGCGACTCTTTCGGT+CGG | 0.658829 | 1_2:+71623662 | None:intergenic |
| AAACTGATCCATTTGCAATG+TGG | 0.665356 | 1_2:-71621333 | Msa0089860:CDS |
| TGATGATGGAAATCTGGAGA+AGG | 0.668735 | 1_2:+71623542 | None:intergenic |
| ATCAAGTGAAGTTCCAACTG+AGG | 0.674729 | 1_2:-71621553 | Msa0089860:CDS |
| ATACAAATGAGTGAGTAACA+AGG | 0.678160 | 1_2:+71622580 | None:intergenic |
| AAGAATCGATACTGTAAATG+CGG | 0.682308 | 1_2:+71623724 | None:intergenic |
| ACTCCTTCAGAGGTTGAGAG+GGG | 0.685216 | 1_2:-71623006 | Msa0089860:CDS |
| GCCACCAGGACTCACTCAGG+AGG | 0.692200 | 1_2:-71621463 | Msa0089860:CDS |
| CGATCTCTAGTAAATGAAGG+CGG | 0.728434 | 1_2:-71623116 | Msa0089860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTATTACAATTC+TGG | - | chr1_2:71621349-71621368 | Msa0089860:CDS | 10.0% |
| !!! | AAGAAAATAGAAATAGTTTT+TGG | + | chr1_2:71621746-71621765 | None:intergenic | 15.0% |
| !!! | AAGCAAGAAATTATATTTTT+TGG | + | chr1_2:71622545-71622564 | None:intergenic | 15.0% |
| !!! | TTTTCTGATTTCTAATTATT+GGG | - | chr1_2:71622768-71622787 | Msa0089860:intron | 15.0% |
| !!! | TAATGTATTTTGTGTTTGTT+AGG | - | chr1_2:71621507-71621526 | Msa0089860:CDS | 20.0% |
| !!! | TTGCTACTTATATAATTGTT+AGG | - | chr1_2:71621821-71621840 | Msa0089860:intron | 20.0% |
| !! | TACTTATATAATTGTTAGGT+TGG | - | chr1_2:71621825-71621844 | Msa0089860:intron | 20.0% |
| !! | ACTTATATAATTGTTAGGTT+GGG | - | chr1_2:71621826-71621845 | Msa0089860:intron | 20.0% |
| !!! | GACAATTTTAATTACAATCA+CGG | + | chr1_2:71621907-71621926 | None:intergenic | 20.0% |
| !! | TGTAATTAAAATTGTCTCTA+AGG | - | chr1_2:71621911-71621930 | Msa0089860:intron | 20.0% |
| !! | TACATTGATCTATATTTAAG+TGG | + | chr1_2:71622504-71622523 | None:intergenic | 20.0% |
| !!! | CAAGAAATTATATTTTTTGG+AGG | + | chr1_2:71622542-71622561 | None:intergenic | 20.0% |
| !! | AAAATATAATTTCTTGCTTG+TGG | - | chr1_2:71622546-71622565 | Msa0089860:intron | 20.0% |
| !!! | CTTTTCTGATTTCTAATTAT+TGG | - | chr1_2:71622767-71622786 | Msa0089860:intron | 20.0% |
| !! | TTTCTGATTTCTAATTATTG+GGG | - | chr1_2:71622769-71622788 | Msa0089860:intron | 20.0% |
| !! | TAAACTCAACAAAATTTGAA+GGG | + | chr1_2:71622800-71622819 | None:intergenic | 20.0% |
| !! | ATAAACTCAACAAAATTTGA+AGG | + | chr1_2:71622801-71622820 | None:intergenic | 20.0% |
| !!! | GACAAGTTCTTTAAAAAAAA+AGG | + | chr1_2:71622833-71622852 | None:intergenic | 20.0% |
| !! | AGGATAAAATATATGATGTA+AGG | - | chr1_2:71623669-71623688 | Msa0089860:five_prime_UTR | 20.0% |
| !! | GGATAAAATATATGATGTAA+GGG | - | chr1_2:71623670-71623689 | Msa0089860:five_prime_UTR | 20.0% |
| ! | TATGTGTAGGAAAATAAAAC+AGG | + | chr1_2:71621252-71621271 | None:intergenic | 25.0% |
| ! | AACATAATATGTGTATGTGT+AGG | + | chr1_2:71621265-71621284 | None:intergenic | 25.0% |
| ! | AGTAGAAGATGATGAAAATA+GGG | + | chr1_2:71621294-71621313 | None:intergenic | 25.0% |
| ! | TATTCAAATTCATAATTGCC+AGG | - | chr1_2:71621317-71621336 | Msa0089860:CDS | 25.0% |
| !! | ACTAACTAGTCTAACTTAAA+TGG | - | chr1_2:71621461-71621480 | Msa0089860:CDS | 25.0% |
| ! | AGATTCTATTGAAAATTGCA+TGG | - | chr1_2:71622302-71622321 | Msa0089860:intron | 25.0% |
| ! | AGAGACATAATTGTAACATT+AGG | - | chr1_2:71622336-71622355 | Msa0089860:intron | 25.0% |
| ! | GATCGTGAAAGAAAAAAAAA+AGG | + | chr1_2:71622451-71622470 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTGGTCAGTATT+AGG | - | chr1_2:71622645-71622664 | Msa0089860:CDS | 25.0% |
| !!! | TTAAGTTTTGGTCAGTATTA+GGG | - | chr1_2:71622646-71622665 | Msa0089860:CDS | 25.0% |
| !! | CAAATTTTGTTGAGTTTATC+AGG | - | chr1_2:71622802-71622821 | Msa0089860:intron | 25.0% |
| ! | GAACAATCAACTTATGAAAA+AGG | + | chr1_2:71622923-71622942 | None:intergenic | 25.0% |
| !!! | TAAGTTGATTGTTCTGATTT+AGG | - | chr1_2:71622929-71622948 | Msa0089860:intron | 25.0% |
| !! | ATTTTCTTCTGCATCATTTT+TGG | - | chr1_2:71622980-71622999 | Msa0089860:intron | 25.0% |
| !!! | TTTTGGTTGTTTATTGTTGA+AGG | - | chr1_2:71622997-71623016 | Msa0089860:CDS | 25.0% |
| AAGAATCGATACTGTAAATG+CGG | + | chr1_2:71620960-71620979 | None:intergenic | 30.0% | |
| GTAGGAAAATAAAACAGGAA+GGG | + | chr1_2:71621247-71621266 | None:intergenic | 30.0% | |
| TGTAGGAAAATAAAACAGGA+AGG | + | chr1_2:71621248-71621267 | None:intergenic | 30.0% | |
| GTAGAAGATGATGAAAATAG+GGG | + | chr1_2:71621293-71621312 | None:intergenic | 30.0% | |
| CAGTAGAAGATGATGAAAAT+AGG | + | chr1_2:71621295-71621314 | None:intergenic | 30.0% | |
| AAATAATTACAGTCAGAACC+TGG | + | chr1_2:71621338-71621357 | None:intergenic | 30.0% | |
| ! | ATTTTACTCCTCGAAATTGT+AGG | - | chr1_2:71621993-71622012 | Msa0089860:intron | 30.0% |
| ! | TTTTACTCCTCGAAATTGTA+GGG | - | chr1_2:71621994-71622013 | Msa0089860:intron | 30.0% |
| TACAAATGAGTGAGTAACAA+GGG | + | chr1_2:71622103-71622122 | None:intergenic | 30.0% | |
| ATACAAATGAGTGAGTAACA+AGG | + | chr1_2:71622104-71622123 | None:intergenic | 30.0% | |
| TTTCCTTGTTGGTATTTCAT+TGG | - | chr1_2:71622139-71622158 | Msa0089860:intron | 30.0% | |
| ! | GCTTTTGATACTTCCATTTA+GGG | - | chr1_2:71622161-71622180 | Msa0089860:intron | 30.0% |
| TAACATTAGGTGATATTCTG+CGG | - | chr1_2:71622349-71622368 | Msa0089860:intron | 30.0% | |
| ! | TTTCTGCGTTAGTTCAATTT+TGG | + | chr1_2:71622403-71622422 | None:intergenic | 30.0% |
| AATTTCTTGCTTGTGGAATT+TGG | - | chr1_2:71622553-71622572 | Msa0089860:intron | 30.0% | |
| ATTTCTTGCTTGTGGAATTT+GGG | - | chr1_2:71622554-71622573 | Msa0089860:intron | 30.0% | |
| CTTCATCTTATTAGAGCATA+TGG | - | chr1_2:71622620-71622639 | Msa0089860:CDS | 30.0% | |
| ! | AGCATATGGAGATTAAGTTT+TGG | - | chr1_2:71622634-71622653 | Msa0089860:CDS | 30.0% |
| ATTGTGCATATTTATTGCTC+TGG | - | chr1_2:71622675-71622694 | Msa0089860:intron | 30.0% | |
| !!! | ACTGGTCTTTTTTCATAGTT+CGG | - | chr1_2:71622896-71622915 | Msa0089860:intron | 30.0% |
| TTGATTGTTCTGATTTAGGA+AGG | - | chr1_2:71622933-71622952 | Msa0089860:intron | 30.0% | |
| AAAGCTTCAAACTGAATCAA+AGG | + | chr1_2:71623035-71623054 | None:intergenic | 30.0% | |
| !!! | TTGAAGCTTTACCTTTTTTG+TGG | - | chr1_2:71623045-71623064 | Msa0089860:CDS | 30.0% |
| !!! | TGAAGCTTTACCTTTTTTGT+GGG | - | chr1_2:71623046-71623065 | Msa0089860:CDS | 30.0% |
| !!! | AGTTTTTAGCAGCATTGATA+CGG | - | chr1_2:71623263-71623282 | Msa0089860:intron | 30.0% |
| ATTTATGTCCACATTGCAAA+TGG | + | chr1_2:71623359-71623378 | None:intergenic | 30.0% | |
| TAAATTTCACTCTGCTTGTT+TGG | - | chr1_2:71623374-71623393 | Msa0089860:intron | 30.0% | |
| GCATTGTTTCATTCTATTGA+AGG | + | chr1_2:71623464-71623483 | None:intergenic | 30.0% | |
| !!! | TTTATTTTGTGACTGTGTCA+AGG | - | chr1_2:71623504-71623523 | Msa0089860:CDS | 30.0% |
| ! | GTTTTGTATCTATCTATGAC+AGG | - | chr1_2:71623696-71623715 | Msa0089860:five_prime_UTR | 30.0% |
| !! | TTTACAGTATCGATTCTTCG+TGG | - | chr1_2:71620962-71620981 | Msa0089860:three_prime_UTR | 35.0% |
| CGATATCATTTCGTCCTAAT+CGG | + | chr1_2:71621099-71621118 | None:intergenic | 35.0% | |
| TATCGGAAAGATTTGATGGA+AGG | - | chr1_2:71621536-71621555 | Msa0089860:CDS | 35.0% | |
| !! | TGAAACCTGTTTCTATCAAC+AGG | + | chr1_2:71621703-71621722 | None:intergenic | 35.0% |
| TTTACTCCTCGAAATTGTAG+GGG | - | chr1_2:71621995-71622014 | Msa0089860:intron | 35.0% | |
| GTTACTCACTCATTTGTATG+TGG | - | chr1_2:71622105-71622124 | Msa0089860:intron | 35.0% | |
| AAGCCAATGAAATACCAACA+AGG | + | chr1_2:71622145-71622164 | None:intergenic | 35.0% | |
| ! | GGCTTTTGATACTTCCATTT+AGG | - | chr1_2:71622160-71622179 | Msa0089860:intron | 35.0% |
| AATTGAACTAACGCAGAAAC+AGG | - | chr1_2:71622404-71622423 | Msa0089860:intron | 35.0% | |
| ! | AAAAGGATTAGCAACACTTC+TGG | + | chr1_2:71622434-71622453 | None:intergenic | 35.0% |
| TCTTTCACGATCTTGTATGT+TGG | - | chr1_2:71622459-71622478 | Msa0089860:intron | 35.0% | |
| !!! | TTTTTTGGAGGATTACGTCA+AGG | + | chr1_2:71622530-71622549 | None:intergenic | 35.0% |
| !! | AGAACTTGTCGATTTACTCA+AGG | - | chr1_2:71622843-71622862 | Msa0089860:intron | 35.0% |
| AGCTCTTCTAATAATCAGAC+TGG | - | chr1_2:71622878-71622897 | Msa0089860:intron | 35.0% | |
| AATTCAATGTCAGATGCACA+GGG | + | chr1_2:71622963-71622982 | None:intergenic | 35.0% | |
| AAATTCAATGTCAGATGCAC+AGG | + | chr1_2:71622964-71622983 | None:intergenic | 35.0% | |
| TCAAACTGAATCAAAGGCAA+TGG | + | chr1_2:71623029-71623048 | None:intergenic | 35.0% | |
| !!! | CTTTACCTTTTTTGTGGGAT+TGG | - | chr1_2:71623051-71623070 | Msa0089860:CDS | 35.0% |
| GTAATTAAAGAGTCCTCAGT+TGG | + | chr1_2:71623144-71623163 | None:intergenic | 35.0% | |
| !! | TACTGACTTGACTTCTCAAA+TGG | - | chr1_2:71623161-71623180 | Msa0089860:intron | 35.0% |
| TTCAAGATGCAAACAGTTCA+GGG | + | chr1_2:71623244-71623263 | None:intergenic | 35.0% | |
| AAACTGATCCATTTGCAATG+TGG | - | chr1_2:71623348-71623367 | Msa0089860:intron | 35.0% | |
| ACTATACATCTTCGACAGTA+AGG | + | chr1_2:71623429-71623448 | None:intergenic | 35.0% | |
| CAACAGGGTTGAAAATACTT+GGG | + | chr1_2:71623579-71623598 | None:intergenic | 35.0% | |
| ACAACAGGGTTGAAAATACT+TGG | + | chr1_2:71623580-71623599 | None:intergenic | 35.0% | |
| CTCACTCAATTACAACAACA+GGG | + | chr1_2:71623594-71623613 | None:intergenic | 35.0% | |
| ACTCACTCAATTACAACAAC+AGG | + | chr1_2:71623595-71623614 | None:intergenic | 35.0% | |
| ! | TATATTTTATCCTCTGCCAC+TGG | + | chr1_2:71623662-71623681 | None:intergenic | 35.0% |
| CTTCAGAACTATTCCACATC+AGG | - | chr1_2:71621068-71621087 | Msa0089860:three_prime_UTR | 40.0% | |
| !! | TGATGATGGAAATCTGGAGA+AGG | + | chr1_2:71621142-71621161 | None:intergenic | 40.0% |
| ! | AATAAAACAGGAAGGGTACG+TGG | + | chr1_2:71621240-71621259 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGGAGCGTGTAT+CGG | - | chr1_2:71621519-71621538 | Msa0089860:CDS | 40.0% |
| CGTGTATCGGAAAGATTTGA+TGG | - | chr1_2:71621532-71621551 | Msa0089860:CDS | 40.0% | |
| CGTCGATCTCTAGTAAATGA+AGG | - | chr1_2:71621562-71621581 | Msa0089860:CDS | 40.0% | |
| CGATCTCTAGTAAATGAAGG+CGG | - | chr1_2:71621565-71621584 | Msa0089860:CDS | 40.0% | |
| TTTGTATGTCACTGAGTCAC+TGG | - | chr1_2:71622057-71622076 | Msa0089860:intron | 40.0% | |
| TTGACCAATTTCAACCGACA+AGG | - | chr1_2:71622247-71622266 | Msa0089860:intron | 40.0% | |
| TTCTCATGATGCATCCTTGT+CGG | + | chr1_2:71622264-71622283 | None:intergenic | 40.0% | |
| ATTCAATGTCAGATGCACAG+GGG | + | chr1_2:71622962-71622981 | None:intergenic | 40.0% | |
| GGAAACCAATCCCACAAAAA+AGG | + | chr1_2:71623059-71623078 | None:intergenic | 40.0% | |
| AATCTCTATCACTTTGCCTG+AGG | + | chr1_2:71623080-71623099 | None:intergenic | 40.0% | |
| GCAAAGTGATAGAGATTCAG+TGG | - | chr1_2:71623083-71623102 | Msa0089860:CDS | 40.0% | |
| ATCAAGTGAAGTTCCAACTG+AGG | - | chr1_2:71623128-71623147 | Msa0089860:CDS | 40.0% | |
| ACTTGACTTCTCAAATGGCA+AGG | - | chr1_2:71623166-71623185 | Msa0089860:intron | 40.0% | |
| CTTCAAGATGCAAACAGTTC+AGG | + | chr1_2:71623245-71623264 | None:intergenic | 40.0% | |
| TGATACGGAATCAGAATCCA+AGG | - | chr1_2:71623278-71623297 | Msa0089860:intron | 40.0% | |
| ! | ATCAGAATCCAAGGTACTTC+AGG | - | chr1_2:71623287-71623306 | Msa0089860:intron | 40.0% |
| GATATGCTTGGAATCTTTCG+TGG | - | chr1_2:71623317-71623336 | Msa0089860:intron | 40.0% | |
| ! | GCTGGCATTTTATAGTGATG+TGG | - | chr1_2:71623540-71623559 | Msa0089860:CDS | 40.0% |
| GTAATTGAGTGAGTCGAAAC+CGG | - | chr1_2:71623601-71623620 | Msa0089860:CDS | 40.0% | |
| AATCTGGAGAAGGTGAAGAG+TGG | + | chr1_2:71621132-71621151 | None:intergenic | 45.0% | |
| CTTTCACTTCCACTTGCTCT+TGG | + | chr1_2:71621622-71621641 | None:intergenic | 45.0% | |
| AGTGAGTAACAAGGGACCAA+GGG | + | chr1_2:71622095-71622114 | None:intergenic | 45.0% | |
| !! | ACAGCTGCTGATTTCCTTGT+TGG | - | chr1_2:71622128-71622147 | Msa0089860:intron | 45.0% |
| ! | GCATCCTTGTCGGTTGAAAT+TGG | + | chr1_2:71622254-71622273 | None:intergenic | 45.0% |
| TGAATCAAAGGCAATGGCAG+AGG | + | chr1_2:71623023-71623042 | None:intergenic | 45.0% | |
| !! | TTTGTGGGATTGGTTTCCTC+AGG | - | chr1_2:71623061-71623080 | Msa0089860:CDS | 45.0% |
| TGATAGAGATTCAGTGGACG+AGG | - | chr1_2:71623089-71623108 | Msa0089860:CDS | 45.0% | |
| !! | TGGTTTGTTCATGCAAGAGC+TGG | + | chr1_2:71623194-71623213 | None:intergenic | 45.0% |
| ! | TCCAAGGTACTTCAGGATTG+TGG | - | chr1_2:71623294-71623313 | Msa0089860:intron | 45.0% |
| ! | CCAAGGTACTTCAGGATTGT+GGG | - | chr1_2:71623295-71623314 | Msa0089860:intron | 45.0% |
| TCAGGATTGTGGGATATGCT+TGG | - | chr1_2:71623305-71623324 | Msa0089860:intron | 45.0% | |
| TGCTTGGAATCTTTCGTGGA+TGG | - | chr1_2:71623321-71623340 | Msa0089860:intron | 45.0% | |
| ACTCTGCTTGTTTGGATCCT+TGG | - | chr1_2:71623382-71623401 | Msa0089860:intron | 45.0% | |
| TACACTGCGACTCTTTCGGT+CGG | + | chr1_2:71621022-71621041 | None:intergenic | 50.0% | |
| GCGATACACTGCGACTCTTT+CGG | + | chr1_2:71621026-71621045 | None:intergenic | 50.0% | |
| ! | CTAATCGGTGTCTCCTGATG+TGG | + | chr1_2:71621084-71621103 | None:intergenic | 50.0% |
| ! | CACATCAGGAGACACCGATT+AGG | - | chr1_2:71621082-71621101 | Msa0089860:three_prime_UTR | 50.0% |
| !! | CGGTGGTGATGATGGAAATC+TGG | + | chr1_2:71621148-71621167 | None:intergenic | 50.0% |
| ! | GAACCTGGAGAAAGTGTGAG+AGG | - | chr1_2:71621592-71621611 | Msa0089860:CDS | 50.0% |
| GTTCCTCTCACACTTTCTCC+AGG | + | chr1_2:71621598-71621617 | None:intergenic | 50.0% | |
| AGAGGAACTCCAAGAGCAAG+TGG | - | chr1_2:71621610-71621629 | Msa0089860:intron | 50.0% | |
| AGACTCCTTCAGAGGTTGAG+AGG | - | chr1_2:71621673-71621692 | Msa0089860:intron | 50.0% | |
| GACTCCTTCAGAGGTTGAGA+GGG | - | chr1_2:71621674-71621693 | Msa0089860:intron | 50.0% | |
| ACTCCTTCAGAGGTTGAGAG+GGG | - | chr1_2:71621675-71621694 | Msa0089860:intron | 50.0% | |
| ! | GGGAGCCTGTTGATAGAAAC+AGG | - | chr1_2:71621695-71621714 | Msa0089860:intron | 50.0% |
| GAGTGAGTAACAAGGGACCA+AGG | + | chr1_2:71622096-71622115 | None:intergenic | 50.0% | |
| AGCACAGAGTGAGCCCTAAA+TGG | + | chr1_2:71622177-71622196 | None:intergenic | 50.0% | |
| TATGTTGGTCCACTGTGCTG+TGG | - | chr1_2:71622474-71622493 | Msa0089860:intron | 50.0% | |
| GAACAAACCAGAAAGCCACC+AGG | - | chr1_2:71623204-71623223 | Msa0089860:intron | 50.0% | |
| ! | CCCACAATCCTGAAGTACCT+TGG | + | chr1_2:71623298-71623317 | None:intergenic | 50.0% |
| GATCCTTGGATTCGCAGTTG+TGG | - | chr1_2:71623396-71623415 | Msa0089860:intron | 50.0% | |
| TCTCCACAACTGCGAATCCA+AGG | + | chr1_2:71623402-71623421 | None:intergenic | 50.0% | |
| CTGTGTCAAGGATGCTGCAA+CGG | - | chr1_2:71623516-71623535 | Msa0089860:CDS | 50.0% | |
| !! | AGCAAGGCATGTATTGGCTC+CGG | + | chr1_2:71623623-71623642 | None:intergenic | 50.0% |
| CATGGGAGCAAGGCATGTAT+TGG | + | chr1_2:71623629-71623648 | None:intergenic | 50.0% | |
| TACATGCCTTGCTCCCATGA+AGG | - | chr1_2:71623630-71623649 | Msa0089860:exon | 50.0% | |
| TTCTCTCCTTCATGGGAGCA+AGG | + | chr1_2:71623639-71623658 | None:intergenic | 50.0% | |
| !! | CCACTGGTTCTCTCCTTCAT+GGG | + | chr1_2:71623646-71623665 | None:intergenic | 50.0% |
| ACGGGGAGAATCATCGTCGT+CGG | + | chr1_2:71621182-71621201 | None:intergenic | 55.0% | |
| ! | ACAGGAAGGGTACGTGGTGA+CGG | + | chr1_2:71621234-71621253 | None:intergenic | 55.0% |
| ! | AATGAAGGCGGCGTTGAACC+TGG | - | chr1_2:71621577-71621596 | Msa0089860:CDS | 55.0% |
| CGCGCAAGTCTCACATCTAC+TGG | + | chr1_2:71621649-71621668 | None:intergenic | 55.0% | |
| CGCGAGAAAGACTCCTTCAG+AGG | - | chr1_2:71621665-71621684 | Msa0089860:intron | 55.0% | |
| GCTCGACCCCTACAATTTCG+AGG | + | chr1_2:71622004-71622023 | None:intergenic | 55.0% | |
| CTGGCTGACACAGATTCCCT+TGG | - | chr1_2:71622076-71622095 | Msa0089860:intron | 55.0% | |
| AGTGGTTGTCCACAGCACAG+TGG | + | chr1_2:71622486-71622505 | None:intergenic | 55.0% | |
| AGTGAGTCCTGGTGGCTTTC+TGG | + | chr1_2:71623214-71623233 | None:intergenic | 55.0% | |
| AAAGCCACCAGGACTCACTC+AGG | - | chr1_2:71623215-71623234 | Msa0089860:intron | 55.0% | |
| CCCATGAAGGAGAGAACCAG+TGG | - | chr1_2:71623643-71623662 | Msa0089860:exon | 55.0% | |
| !! | GCCACTGGTTCTCTCCTTCA+TGG | + | chr1_2:71623647-71623666 | None:intergenic | 55.0% |
| AAGGAGAGAACCAGTGGCAG+AGG | - | chr1_2:71623649-71623668 | Msa0089860:five_prime_UTR | 55.0% | |
| ! | CGTGAAGGCGGTGGTGATGA+TGG | + | chr1_2:71621156-71621175 | None:intergenic | 60.0% |
| CATCGTCGTCGGAGTCGTGA+AGG | + | chr1_2:71621171-71621190 | None:intergenic | 60.0% | |
| TTGTAGTGGCGGCGGATACG+GGG | + | chr1_2:71621199-71621218 | None:intergenic | 60.0% | |
| GTTGTAGTGGCGGCGGATAC+GGG | + | chr1_2:71621200-71621219 | None:intergenic | 60.0% | |
| CGTTGTAGTGGCGGCGGATA+CGG | + | chr1_2:71621201-71621220 | None:intergenic | 60.0% | |
| GCTCCCCTCTCAACCTCTGA+AGG | + | chr1_2:71621681-71621700 | None:intergenic | 60.0% | |
| CAAGGATGCTGCAACGGAGC+TGG | - | chr1_2:71623522-71623541 | Msa0089860:CDS | 60.0% | |
| CGTCGTCGGAGTCGTGAAGG+CGG | + | chr1_2:71621168-71621187 | None:intergenic | 65.0% | |
| !! | AGGGTACGTGGTGACGGAGG+CGG | + | chr1_2:71621228-71621247 | None:intergenic | 65.0% |
| !! | GGAAGGGTACGTGGTGACGG+AGG | + | chr1_2:71621231-71621250 | None:intergenic | 65.0% |
| GCCACCAGGACTCACTCAGG+AGG | - | chr1_2:71623218-71623237 | Msa0089860:intron | 65.0% | |
| GCCTCCTGAGTGAGTCCTGG+TGG | + | chr1_2:71623222-71623241 | None:intergenic | 65.0% | |
| AGGGCCTCCTGAGTGAGTCC+TGG | + | chr1_2:71623225-71623244 | None:intergenic | 65.0% | |
| CGTCGGAGTCGTGAAGGCGG+TGG | + | chr1_2:71621165-71621184 | None:intergenic | 70.0% | |
| GGCGGACGTTGTAGTGGCGG+CGG | + | chr1_2:71621207-71621226 | None:intergenic | 70.0% | |
| GGCGGCGGACGTTGTAGTGG+CGG | + | chr1_2:71621210-71621229 | None:intergenic | 70.0% | |
| GGAGGCGGCGGACGTTGTAG+TGG | + | chr1_2:71621213-71621232 | None:intergenic | 70.0% | |
| !! | GTACGTGGTGACGGAGGCGG+CGG | + | chr1_2:71621225-71621244 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71620951 | 71623752 | 71620951 | ID=Msa0089860;Name=Msa0089860 |
| chr1_2 | mRNA | 71620951 | 71623752 | 71620951 | ID=Msa0089860-mRNA-1;Parent=Msa0089860;Name=Msa0089860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=107|0.33|0.75|1|1|1|4|282|287 |
| chr1_2 | exon | 71620951 | 71621620 | 71620951 | ID=Msa0089860-mRNA-1:exon:24730;Parent=Msa0089860-mRNA-1 |
| chr1_2 | exon | 71622584 | 71622688 | 71622584 | ID=Msa0089860-mRNA-1:exon:24729;Parent=Msa0089860-mRNA-1 |
| chr1_2 | exon | 71622987 | 71623174 | 71622987 | ID=Msa0089860-mRNA-1:exon:24728;Parent=Msa0089860-mRNA-1 |
| chr1_2 | exon | 71623463 | 71623752 | 71623463 | ID=Msa0089860-mRNA-1:exon:24727;Parent=Msa0089860-mRNA-1 |
| chr1_2 | five_prime_UTR | 71623646 | 71623752 | 71623646 | ID=Msa0089860-mRNA-1:five_prime_utr;Parent=Msa0089860-mRNA-1 |
| chr1_2 | CDS | 71623463 | 71623645 | 71623463 | ID=Msa0089860-mRNA-1:cds;Parent=Msa0089860-mRNA-1 |
| chr1_2 | CDS | 71622987 | 71623174 | 71622987 | ID=Msa0089860-mRNA-1:cds;Parent=Msa0089860-mRNA-1 |
| chr1_2 | CDS | 71622584 | 71622688 | 71622584 | ID=Msa0089860-mRNA-1:cds;Parent=Msa0089860-mRNA-1 |
| chr1_2 | CDS | 71621233 | 71621620 | 71621233 | ID=Msa0089860-mRNA-1:cds;Parent=Msa0089860-mRNA-1 |
| chr1_2 | three_prime_UTR | 71620951 | 71621232 | 71620951 | ID=Msa0089860-mRNA-1:three_prime_utr;Parent=Msa0089860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
