AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460600 MtrunA17_Chr3g0109901 98.622 508 7 0 1 508 1 508 0.0 1044
Msa0460600 MtrunA17_Chr6g0480631 74.755 511 114 4 1 508 1 499 0.0 785
Msa0460600 MtrunA17_Chr8g0375301 78.097 452 98 1 1 451 1 452 0.0 753
Msa0460600 MtrunA17_Chr5g0433931 81.884 414 69 3 96 508 1 409 0.0 706
Msa0460600 MtrunA17_Chr5g0433921 90.722 97 9 0 1 97 1 97 1.87e-57 186
Msa0460600 MtrunA17_Chr7g0222381 25.275 364 240 11 81 433 157 499 1.86e-24 106
Msa0460600 MtrunA17_Chr5g0432951 76.190 42 10 0 252 293 15 56 9.72e-17 75.5
Msa0460600 MtrunA17_Chr5g0432961 46.914 81 43 0 372 452 13 93 1.05e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460600 AT5G17330.1 84.510 510 69 4 1 508 1 502 0.0 885
Msa0460600 AT2G02010.2 80.906 508 82 3 1 508 53 545 0.0 858
Msa0460600 AT2G02010.1 81.299 508 80 4 1 508 1 493 0.0 858
Msa0460600 AT1G65960.2 80.709 508 84 4 1 508 1 494 0.0 845
Msa0460600 AT2G02000.1 80.242 496 82 3 1 494 1 482 0.0 836
Msa0460600 AT3G17760.2 74.600 500 119 3 1 500 1 492 0.0 784
Msa0460600 AT3G17760.1 74.600 500 119 3 1 500 1 492 0.0 784
Msa0460600 AT1G65960.1 80.423 378 61 3 131 508 1 365 0.0 628
Msa0460600 AT1G65960.3 80.423 378 61 3 131 508 1 365 0.0 628
Msa0460600 AT1G65960.4 80.423 378 61 3 131 508 1 365 0.0 628
Msa0460600 AT3G17720.1 74.691 162 38 1 91 252 27 185 1.74e-81 252
Msa0460600 AT1G27980.1 24.444 360 244 10 81 431 160 500 4.36e-20 94.0

Find 133 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTCATCGTTTATTATT+TGG 0.136280 3_3:+58070916 None:intergenic
CTGGAATTGGTTGGGCTATT+TGG 0.152853 3_3:-58066843 Msa0460600:CDS
ATCCTTGGTTCAACGCTAAA+TGG 0.251746 3_3:-58067167 Msa0460600:CDS
TCGAGTTCTGGATAAATAAA+TGG 0.285822 3_3:+58066934 None:intergenic
CGGAAATCCCACTCGAGTTC+TGG 0.298635 3_3:+58066922 None:intergenic
GTTGAAAAGAATAAGGAAAC+TGG 0.312144 3_3:-58067107 Msa0460600:CDS
TCTCCTTGTTGAAAAGAATA+AGG 0.326676 3_3:-58067114 Msa0460600:CDS
ATTTGGTATGCTGCATCCTT+TGG 0.329291 3_3:+58070933 None:intergenic
GCAGTTGGTGTTGGCACTGT+TGG 0.345197 3_3:-58067526 Msa0460600:CDS
AACGATGAATTGATGCTTGA+TGG 0.349990 3_3:-58070906 Msa0460600:CDS
AGAGAGAAATTACTGCGATT+TGG 0.357715 3_3:-58065781 Msa0460600:CDS
GTCAACGTAGTTCTTGTTGA+TGG 0.362529 3_3:+58070809 None:intergenic
CATGAAGTTGTGAAAGATAA+TGG 0.363997 3_3:-58065842 Msa0460600:CDS
AAGGATGCCAAGTTCAATCT+AGG 0.365541 3_3:+58070879 None:intergenic
ATCTGTGTTGCTGCTATCCT+TGG 0.374389 3_3:-58067182 Msa0460600:CDS
TCCGACTTGTTGAGGCGCTT+CGG 0.376346 3_3:-58066055 Msa0460600:CDS
ATGTGAAAGATGAGTTCTTC+AGG 0.381067 3_3:+58066802 None:intergenic
ACGGTTATGTGTTGAGCATC+CGG 0.387398 3_3:+58066004 None:intergenic
CCCTCAAAAGGCTGTGGAAT+TGG 0.393571 3_3:-58067219 Msa0460600:CDS
GGCTATAATGTTAGCTGGAT+TGG 0.399926 3_3:-58067494 Msa0460600:CDS
ACAATGTTGGGTTTGTCATA+AGG 0.406582 3_3:+58067427 None:intergenic
CTAGCTGCATCCACATGAAT+AGG 0.423113 3_3:+58066973 None:intergenic
CCTAATGACAACGCGTAAAA+CGG 0.423881 3_3:+58065985 None:intergenic
TTGTCTATGCTGGAATTGGT+TGG 0.426198 3_3:-58066852 Msa0460600:CDS
ACCTGGAGCTCAGTGGTGAC+GGG 0.426947 3_3:+58070774 None:intergenic
TTCATCTTGTGAAGGTTTGT+TGG 0.428544 3_3:-58067313 Msa0460600:intron
TTGGCTCCAGTGACAATGTT+GGG 0.432381 3_3:+58067415 None:intergenic
TGTCTATGCTGGAATTGGTT+GGG 0.432578 3_3:-58066851 Msa0460600:CDS
TGGCATCCTTTGTGACAACT+TGG 0.434405 3_3:-58070866 Msa0460600:CDS
GAAAGACGACGGTGTACCTT+TGG 0.434840 3_3:-58066125 Msa0460600:CDS
TACCTGGAGCTCAGTGGTGA+CGG 0.440037 3_3:+58070773 None:intergenic
GGTCTTGTCTATGCTGGAAT+TGG 0.440515 3_3:-58066856 Msa0460600:CDS
TCATCTTGTGAAGGTTTGTT+GGG 0.440857 3_3:-58067312 Msa0460600:intron
ACTAATACGTCTTGGTTATG+AGG 0.453134 3_3:-58066362 Msa0460600:intron
TTTGGTGGCCTTCACATTGA+AGG 0.458482 3_3:-58066107 Msa0460600:CDS
CCCCGTCACCACTGAGCTCC+AGG 0.459250 3_3:-58070775 Msa0460600:intron
CTTTGAAGTGGAATTGAAAG+AGG 0.469636 3_3:-58067273 Msa0460600:CDS
ATTTGTACAAAATGCAGAAA+AGG 0.477858 3_3:+58065494 None:intergenic
CTATGTAATGGACCCTCAAA+AGG 0.479714 3_3:-58067231 Msa0460600:CDS
GAGAGAAAGTATGTTTGTGT+TGG 0.481256 3_3:+58071403 None:intergenic
CGGTTATGTGTTGAGCATCC+GGG 0.487789 3_3:+58066005 None:intergenic
TAGCTGGATTGGCATTCAAA+AGG 0.488770 3_3:-58067483 Msa0460600:CDS
AATGTTAGTGGTCACAAATA+CGG 0.489182 3_3:-58066877 Msa0460600:CDS
GGAAGAAGTTTGTGATGGAT+AGG 0.490629 3_3:-58065760 Msa0460600:CDS
ATCTTTCACATCAACTATCT+AGG 0.491229 3_3:-58066790 Msa0460600:CDS
ATGTCAGAACTTCACTTCCT+AGG 0.491432 3_3:-58071304 Msa0460600:intron
GTGGGATTTCCGCTTACCAT+TGG 0.491732 3_3:-58066911 Msa0460600:CDS
GTGAAGAGTATCAATGTTAG+TGG 0.498190 3_3:-58066889 Msa0460600:CDS
GTTACCTTTGGAGAAGTTGA+GGG 0.499919 3_3:+58066747 None:intergenic
ATGTTTATACTTTATAAGCA+TGG 0.502876 3_3:-58065549 Msa0460600:three_prime_UTR
GAGAAGTTGAGGGTAAAGGT+AGG 0.503154 3_3:+58066757 None:intergenic
ACTTGTTGAGGCGCTTCGGA+TGG 0.503654 3_3:-58066051 Msa0460600:CDS
AAATACGGTCTTGTCTATGC+TGG 0.504103 3_3:-58066862 Msa0460600:CDS
TGGAAACCCTAGATTGAACT+TGG 0.505999 3_3:-58070886 Msa0460600:CDS
TCCTTTGGTATAGACTCATC+TGG 0.507663 3_3:+58070948 None:intergenic
TCAGAGGCTATAATGTTAGC+TGG 0.510971 3_3:-58067499 Msa0460600:CDS
CATAACCAAGACGTATTAGT+TGG 0.512214 3_3:+58066365 None:intergenic
CAACATGATAGTACTAAAAG+AGG 0.514647 3_3:-58066182 Msa0460600:CDS
TTCAAATCTCCGACTTGTTG+AGG 0.514940 3_3:-58066063 Msa0460600:CDS
TTTGGAGAAGTTGAGGGTAA+AGG 0.515641 3_3:+58066753 None:intergenic
TGTTACCTTTGGAGAAGTTG+AGG 0.521918 3_3:+58066746 None:intergenic
ATTTGCAAGGTACTTTGAAG+TGG 0.524328 3_3:-58067285 Msa0460600:CDS
GGTGTTTGCTAGAATCAGCT+TGG 0.528568 3_3:-58065713 Msa0460600:exon
GACAAACCCAACATTGTCAC+TGG 0.537693 3_3:-58067421 Msa0460600:CDS
TACTACCAACTAATACGTCT+TGG 0.539700 3_3:-58066370 Msa0460600:CDS
AGAGAAAGTATGTTTGTGTT+GGG 0.540215 3_3:+58071404 None:intergenic
TGCACCACTTAAAGAAAATG+AGG 0.543644 3_3:-58067551 Msa0460600:CDS
AGACGACGGTGTACCTTTGG+TGG 0.544514 3_3:-58066122 Msa0460600:CDS
TCAAAAGGCTGTGGAATTGG+TGG 0.546678 3_3:-58067216 Msa0460600:CDS
GAAATTCATCAAAGTTTGTG+TGG 0.556299 3_3:+58066083 None:intergenic
AAAGAGGTTAAGCTAAGTGA+AGG 0.559738 3_3:-58067257 Msa0460600:CDS
TTGCTAGAATCAGCTTGGAA+TGG 0.563060 3_3:-58065708 Msa0460600:exon
ATATATATGTACCTGGACAT+TGG 0.564641 3_3:+58067396 None:intergenic
AAGTGAAGGATACTATGTAA+TGG 0.565226 3_3:-58067243 Msa0460600:CDS
GATTGGCATTCAAAAGGAAG+TGG 0.569504 3_3:-58067477 Msa0460600:CDS
AGGATGCCAAGTTCAATCTA+GGG 0.569848 3_3:+58070880 None:intergenic
AAAGAAAATGAGGCTGCAGT+TGG 0.571389 3_3:-58067541 Msa0460600:CDS
TGTCACTGGAGCCAATGTCC+AGG 0.573804 3_3:-58067407 Msa0460600:intron
CAACAAGAACTACGTTGACA+TGG 0.574009 3_3:-58070805 Msa0460600:CDS
TATTTATCCAGAACTCGAGT+GGG 0.578175 3_3:-58066929 Msa0460600:CDS
TGAGTGTGATAAACTCATCA+TGG 0.579495 3_3:-58070835 Msa0460600:CDS
TTCTCTCATTCTCACAACCA+TGG 0.582087 3_3:-58071387 Msa0460600:exon
AGCGGGAAGCAAAGGTTGAG+TGG 0.584467 3_3:+58071327 None:intergenic
TCCAGCATACAGCATGCCCC+CGG 0.584797 3_3:-58066023 Msa0460600:CDS
TCTATGATTCTCATGATGAG+TGG 0.585225 3_3:-58065591 Msa0460600:three_prime_UTR
GGAAGCAAAGGTTGAGTGGA+CGG 0.585475 3_3:+58071331 None:intergenic
TTTACCCTCAACTTCTCCAA+AGG 0.585575 3_3:-58066751 Msa0460600:intron
AATCAGCTTGGAATGGAACA+AGG 0.585820 3_3:-58065701 Msa0460600:three_prime_UTR
ATTGGCTCCAGTGACAATGT+TGG 0.587848 3_3:+58067414 None:intergenic
AATGGACCCTCAAAAGGCTG+TGG 0.588314 3_3:-58067225 Msa0460600:CDS
CCTGGAGCTCAGTGGTGACG+GGG 0.588478 3_3:+58070775 None:intergenic
GGTTATGTGTTGAGCATCCG+GGG 0.589154 3_3:+58066006 None:intergenic
ATCCTTTGTGACAACTTGGA+TGG 0.592505 3_3:-58070862 Msa0460600:CDS
GCGAGGATAAAGATGATAAG+TGG 0.592545 3_3:-58065884 Msa0460600:CDS
TGGCACTGTTGGCTCATCAG+AGG 0.595925 3_3:-58067515 Msa0460600:CDS
AAGTGAAGTTCTGACATAGC+GGG 0.596432 3_3:+58071310 None:intergenic
GCAGAACAAAAGAAAACTAG+AGG 0.597240 3_3:-58067455 Msa0460600:CDS
TCTGACATAGCGGGAAGCAA+AGG 0.597769 3_3:+58071319 None:intergenic
AATGAGGCTGCAGTTGGTGT+TGG 0.597938 3_3:-58067535 Msa0460600:CDS
AAGTTGAATGATAAGATGAA+TGG 0.598555 3_3:-58065734 Msa0460600:CDS
CATGTGGATGCAGCTAGTGG+TGG 0.599570 3_3:-58066967 Msa0460600:CDS
TTATTTATCCAGAACTCGAG+TGG 0.603826 3_3:-58066930 Msa0460600:CDS
CTTTCTCTATATCAGCTACA+AGG 0.608061 3_3:+58065933 None:intergenic
TTGGGCTATTTGGAGAAGCA+AGG 0.608130 3_3:-58066833 Msa0460600:CDS
TCATTAGGGAGGATTTCTCA+AGG 0.609229 3_3:-58065970 Msa0460600:CDS
CTCCATTTAGCGTTGAACCA+AGG 0.610227 3_3:+58067165 None:intergenic
GCCAGATGAGTCTATACCAA+AGG 0.611743 3_3:-58070949 Msa0460600:CDS
TTTACGCGTTGTCATTAGGG+AGG 0.614957 3_3:-58065981 Msa0460600:CDS
TTCAATGTGAAGGCCACCAA+AGG 0.619278 3_3:+58066109 None:intergenic
TACTCTTCACCAATGGTAAG+CGG 0.619728 3_3:+58066902 None:intergenic
TTGAAAAGAATAAGGAAACT+GGG 0.621388 3_3:-58067106 Msa0460600:intron
AACATGATAGTACTAAAAGA+GGG 0.624331 3_3:-58066181 Msa0460600:CDS
ATGGGACACTCCTATTCATG+TGG 0.625531 3_3:-58066983 Msa0460600:CDS
ATTCATGTGGATGCAGCTAG+TGG 0.626108 3_3:-58066970 Msa0460600:CDS
TCCGAAGCGCCTCAACAAGT+CGG 0.626271 3_3:+58066054 None:intergenic
ATGATGAGTTTATCACACTC+AGG 0.633349 3_3:+58070837 None:intergenic
TGTGTGGTCCTTCAATGTGA+AGG 0.636795 3_3:+58066099 None:intergenic
ATCAGCTTGGAATGGAACAA+GGG 0.638278 3_3:-58065700 Msa0460600:three_prime_UTR
CTCCATCCAAGTTGTCACAA+AGG 0.640690 3_3:+58070860 None:intergenic
TTTGTTGGGAGAAATTTGCA+AGG 0.640788 3_3:-58067298 Msa0460600:CDS
AAGGATAGCAGCAACACAGA+TGG 0.642966 3_3:+58067184 None:intergenic
ACATTGATACTCTTCACCAA+TGG 0.659392 3_3:+58066895 None:intergenic
GGCTGTCTTTGAGAGAACCA+TGG 0.660529 3_3:+58071370 None:intergenic
GAAAGATAATGGTCAAGTAG+TGG 0.665686 3_3:-58065831 Msa0460600:CDS
GATTTGGAAGAAGTTTGTGA+TGG 0.665700 3_3:-58065765 Msa0460600:CDS
GTGGACGGAAACATCAGACT+CGG 0.670695 3_3:+58071346 None:intergenic
CAGAACAAAAGAAAACTAGA+GGG 0.676928 3_3:-58067454 Msa0460600:CDS
AACATTGTGTCGAAAGACGA+CGG 0.682392 3_3:-58066136 Msa0460600:CDS
AAGGTCTACCTGGAGCTCAG+TGG 0.684607 3_3:+58070767 None:intergenic
AGCTTGATTCACTTACTGCG+AGG 0.692666 3_3:-58065901 Msa0460600:CDS
GAAGTGAAGTTCTGACATAG+CGG 0.697054 3_3:+58071309 None:intergenic
GACGGAAACATCAGACTCGG+AGG 0.705679 3_3:+58071349 None:intergenic
GTTATGTGTTGAGCATCCGG+GGG 0.743423 3_3:+58066007 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATAAATATATA+TGG + chr3_3:58067044-58067063 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr3_3:58067336-58067355 Msa0460600:intron 0.0%
!!! TGATCATTTTATTTTTTAAA+CGG - chr3_3:58065629-58065648 Msa0460600:three_prime_UTR 10.0%
!!! AATTTTTTAAAAAAGGAATT+GGG + chr3_3:58066457-58066476 None:intergenic 10.0%
!! AAAATTAATAAATTACTCAA+TGG + chr3_3:58066484-58066503 None:intergenic 10.0%
!!! ATTTATTAATTTTTGTTTTG+TGG - chr3_3:58066491-58066510 Msa0460600:intron 10.0%
!! CAATAAATAATTAATAGTTA+AGG + chr3_3:58066523-58066542 None:intergenic 10.0%
!! TTAATTGGAAAATTAAATAT+GGG + chr3_3:58066848-58066867 None:intergenic 10.0%
!! ATTAATTGGAAAATTAAATA+TGG + chr3_3:58066849-58066868 None:intergenic 10.0%
!! ATATCATAAAATTAATTAGA+AGG - chr3_3:58067298-58067317 Msa0460600:CDS 10.0%
!! ATTTAATATATAACAATGAA+TGG + chr3_3:58067498-58067517 None:intergenic 10.0%
!!! TTTTGTTTTGAAAATATTTT+AGG - chr3_3:58067629-58067648 Msa0460600:intron 10.0%
!! ATAAAATATATATAGAGAAA+GGG + chr3_3:58067689-58067708 None:intergenic 10.0%
!! AATAAAATATATATAGAGAA+AGG + chr3_3:58067690-58067709 None:intergenic 10.0%
!!! AACTTAAATTTTTTAATGTT+GGG + chr3_3:58067895-58067914 None:intergenic 10.0%
!! CAAAATAAAAAATATTTATC+GGG - chr3_3:58068518-58068537 Msa0460600:intron 10.0%
!! AAAATAAAAAATATTTATCG+GGG - chr3_3:58068519-58068538 Msa0460600:intron 10.0%
!! GATATACATAATATTAATTA+AGG - chr3_3:58068545-58068564 Msa0460600:intron 10.0%
!! AAAATAAAATGATCAACATA+AGG + chr3_3:58065624-58065643 None:intergenic 15.0%
!! ATAAACAAAAAGTAAGTAAA+AGG + chr3_3:58066167-58066186 None:intergenic 15.0%
!! TATTACAACAAATCAAATAA+AGG + chr3_3:58066201-58066220 None:intergenic 15.0%
!! TAGTATTAAAAAACATATCA+TGG - chr3_3:58066224-58066243 Msa0460600:intron 15.0%
!!! ATTTTTTAAAAAAGGAATTG+GGG + chr3_3:58066456-58066475 None:intergenic 15.0%
!!! CAATTTTTTAAAAAAGGAAT+TGG + chr3_3:58066458-58066477 None:intergenic 15.0%
!!! TGGAAACAATTTTTTAAAAA+AGG + chr3_3:58066464-58066483 None:intergenic 15.0%
!! TATTAATTATTTATTGCACA+TGG - chr3_3:58066527-58066546 Msa0460600:intron 15.0%
!!! TAATATTTTTAAGTTTTTGG+TGG + chr3_3:58066793-58066812 None:intergenic 15.0%
!!! CACTAATATTTTTAAGTTTT+TGG + chr3_3:58066796-58066815 None:intergenic 15.0%
!! CAAAAACTTAAAAATATTAG+TGG - chr3_3:58066794-58066813 Msa0460600:CDS 15.0%
!! TAATTGGAAAATTAAATATG+GGG + chr3_3:58066847-58066866 None:intergenic 15.0%
!! TAACTTATAAAACAAAGAAA+AGG + chr3_3:58066905-58066924 None:intergenic 15.0%
!!! TTTTCTTTGTTTTATAAGTT+AGG - chr3_3:58066904-58066923 Msa0460600:CDS 15.0%
!! AATAAAAGAGAAGATATAAT+TGG - chr3_3:58067074-58067093 Msa0460600:intron 15.0%
!! ATAAAAGAGAAGATATAATT+GGG - chr3_3:58067075-58067094 Msa0460600:intron 15.0%
!! CTAAAATTGAAAAATACAAA+AGG + chr3_3:58067117-58067136 None:intergenic 15.0%
!!! CTTTTGTATTTTTCAATTTT+AGG - chr3_3:58067115-58067134 Msa0460600:CDS 15.0%
!!! CTAAATATTTGTTATAAAGA+TGG + chr3_3:58067227-58067246 None:intergenic 15.0%
!!! ACTTAAATTTTTTAATGTTG+GGG + chr3_3:58067894-58067913 None:intergenic 15.0%
!!! CAACTTAAATTTTTTAATGT+TGG + chr3_3:58067896-58067915 None:intergenic 15.0%
!!! CTTTAACTGTTTTTTTTTTT+TGG + chr3_3:58067952-58067971 None:intergenic 15.0%
!! ATCTTTAATGAAGATTAATT+AGG + chr3_3:58068370-58068389 None:intergenic 15.0%
!! AATGCAAATTTATGGATTTA+AGG + chr3_3:58065773-58065792 None:intergenic 20.0%
!!! AAATCATATTTTGAGAATCA+AGG - chr3_3:58065864-58065883 Msa0460600:CDS 20.0%
!! TCAATTCATCGTTTATTATT+TGG + chr3_3:58065983-58066002 None:intergenic 20.0%
!!! TATTTAAACATTTCTTTTCC+TGG - chr3_3:58066315-58066334 Msa0460600:intron 20.0%
!! TTTAATATACGCATCAATTA+AGG + chr3_3:58066387-58066406 None:intergenic 20.0%
!!! CTACTTATCTTCTTTTTTTT+TGG + chr3_3:58066606-58066625 None:intergenic 20.0%
!!! TCTTTTTTAGTTGTCATTTT+CGG + chr3_3:58066703-58066722 None:intergenic 20.0%
!! AAAATGACAACTAAAAAAGA+AGG - chr3_3:58066703-58066722 Msa0460600:intron 20.0%
!! AATGCATAATAATATATGCA+AGG - chr3_3:58066745-58066764 Msa0460600:intron 20.0%
!!! GATACTTAGAAGTATTATTA+GGG + chr3_3:58067551-58067570 None:intergenic 20.0%
!!! AGATACTTAGAAGTATTATT+AGG + chr3_3:58067552-58067571 None:intergenic 20.0%
!!! TTTTCAAAACAAAAATCACT+AGG + chr3_3:58067623-58067642 None:intergenic 20.0%
!!! AAATATTTTAGGTAGAATTG+TGG - chr3_3:58067640-58067659 Msa0460600:intron 20.0%
!!! AATATTTTAGGTAGAATTGT+GGG - chr3_3:58067641-58067660 Msa0460600:intron 20.0%
!!! CTTAAATTTTTTAATGTTGG+GGG + chr3_3:58067893-58067912 None:intergenic 20.0%
!! CAAACAAAAAATAGATGTAT+AGG - chr3_3:58068020-58068039 Msa0460600:intron 20.0%
!! AAAAATAGATGTATAGGTAA+AGG - chr3_3:58068026-58068045 Msa0460600:intron 20.0%
!! GTCATTTGTAATATTATAGT+TGG - chr3_3:58068181-58068200 Msa0460600:intron 20.0%
!! TATAATATGACAATGACTTA+CGG + chr3_3:58068415-58068434 None:intergenic 20.0%
!! AAATGGAATGAAATAATCAT+TGG - chr3_3:58068654-58068673 Msa0460600:intron 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG + chr3_3:58068703-58068722 None:intergenic 20.0%
!! GAAAAAAATTAAAGTTGCAT+TGG - chr3_3:58068781-58068800 Msa0460600:intron 20.0%
!!! AAATTTCTTTTTATTGGATG+AGG - chr3_3:58069175-58069194 Msa0460600:intron 20.0%
!!! CATAATTTTTGTCATTGAAA+TGG + chr3_3:58069211-58069230 None:intergenic 20.0%
!! CATTTCAATGACAAAAATTA+TGG - chr3_3:58069209-58069228 Msa0460600:intron 20.0%
!!! AGTATTTTTTTAATTGGTCA+TGG + chr3_3:58069240-58069259 None:intergenic 20.0%
!! AAAATAAAGAGAAGACATTA+TGG + chr3_3:58069849-58069868 None:intergenic 20.0%
!!! CTTCTCTTTATTTTACATTT+TGG - chr3_3:58069855-58069874 Msa0460600:intron 20.0%
!! TTATGATAAGTATGTAAAAG+GGG + chr3_3:58070581-58070600 None:intergenic 20.0%
!! GTTATGATAAGTATGTAAAA+GGG + chr3_3:58070582-58070601 None:intergenic 20.0%
!! AGTTATGATAAGTATGTAAA+AGG + chr3_3:58070583-58070602 None:intergenic 20.0%
!!! TATAGCTTCTTTTTTTGTTA+AGG - chr3_3:58071246-58071265 Msa0460600:intron 20.0%
!!! AAACATGATTATGTTTTTCT+TGG + chr3_3:58071333-58071352 None:intergenic 20.0%
!! ATGTTTATACTTTATAAGCA+TGG - chr3_3:58071347-58071366 Msa0460600:CDS 20.0%
! ACAAGATCAATGCAAATTTA+TGG + chr3_3:58065781-58065800 None:intergenic 25.0%
!! TAAGTAAAAGGTATGATGTA+GGG + chr3_3:58066155-58066174 None:intergenic 25.0%
! GAGAGGAAATTAGATTAATA+AGG + chr3_3:58066354-58066373 None:intergenic 25.0%
!!! GTAGTTTTATCAACATTCTT+TGG - chr3_3:58066622-58066641 Msa0460600:intron 25.0%
! TAATAATATATGCAAGGTCT+AGG - chr3_3:58066751-58066770 Msa0460600:intron 25.0%
! AATAATATATGCAAGGTCTA+GGG - chr3_3:58066752-58066771 Msa0460600:CDS 25.0%
! AGCTATACATAATATATGCA+AGG - chr3_3:58066947-58066966 Msa0460600:CDS 25.0%
!!! ATTTCCTGACTTATTTTTTG+CGG + chr3_3:58066995-58067014 None:intergenic 25.0%
! AATATATATGGCACTTGTAA+GGG + chr3_3:58067032-58067051 None:intergenic 25.0%
! AAATATATATGGCACTTGTA+AGG + chr3_3:58067033-58067052 None:intergenic 25.0%
! TACAAAAGGTCAAAATACAA+AGG + chr3_3:58067103-58067122 None:intergenic 25.0%
! GTGTAAATGTTTGAATTTGA+GGG + chr3_3:58067927-58067946 None:intergenic 25.0%
! AGTGTAAATGTTTGAATTTG+AGG + chr3_3:58067928-58067947 None:intergenic 25.0%
!!! ATAATTAACACCTCTAAGAT+TGG + chr3_3:58067984-58068003 None:intergenic 25.0%
!! AGTGTTATTCAAGTATAAAC+TGG + chr3_3:58068062-58068081 None:intergenic 25.0%
! TTTATACTTGAATAACACTC+CGG - chr3_3:58068063-58068082 Msa0460600:intron 25.0%
! GGATAAGAAATAAATGCAAA+AGG + chr3_3:58068349-58068368 None:intergenic 25.0%
! ATAATATGACAATGACTTAC+GGG + chr3_3:58068414-58068433 None:intergenic 25.0%
! TTTAAATGCGACAAATATCA+TGG - chr3_3:58068917-58068936 Msa0460600:intron 25.0%
! TTAAATGCGACAAATATCAT+GGG - chr3_3:58068918-58068937 Msa0460600:intron 25.0%
!!! GACACATACTCATTTTAATT+AGG + chr3_3:58069113-58069132 None:intergenic 25.0%
! TATATGGATATATGCAGAAT+CGG - chr3_3:58069293-58069312 Msa0460600:intron 25.0%
! ACATGTTATATATATGTACC+TGG + chr3_3:58069510-58069529 None:intergenic 25.0%
!! TTTCCTTATTCTTTTCAACA+AGG + chr3_3:58069788-58069807 None:intergenic 25.0%
! TTGAAAAGAATAAGGAAACT+GGG - chr3_3:58069790-58069809 Msa0460600:intron 25.0%
!!! TATTTTACATTTTGGAGTTG+AGG - chr3_3:58069863-58069882 Msa0460600:intron 25.0%
!! TATGACATTCTTTTTGTAGA+TGG - chr3_3:58069894-58069913 Msa0460600:intron 25.0%
!! ATGACATTCTTTTTGTAGAT+GGG - chr3_3:58069895-58069914 Msa0460600:intron 25.0%
! TTTGTTTAGCTATTGAAACT+TGG + chr3_3:58070415-58070434 None:intergenic 25.0%
! AACATGATAGTACTAAAAGA+GGG - chr3_3:58070715-58070734 Msa0460600:intron 25.0%
! AAGTTGAATGATAAGATGAA+TGG - chr3_3:58071162-58071181 Msa0460600:intron 25.0%
! ATTTGTACAAAATGCAGAAA+AGG + chr3_3:58071405-58071424 None:intergenic 25.0%
! AGAGAAAGTATGTTTGTGTT+GGG + chr3_3:58065495-58065514 None:intergenic 30.0%
TCAACATAAGGTTATTACCT+AGG + chr3_3:58065612-58065631 None:intergenic 30.0%
! GTAAGTAAAAGGTATGATGT+AGG + chr3_3:58066156-58066175 None:intergenic 30.0%
CTAGCTAATGAAAAGCAATA+AGG + chr3_3:58066412-58066431 None:intergenic 30.0%
AAATGTTTGAATTTGAGGGA+AGG + chr3_3:58067923-58067942 None:intergenic 30.0%
GTTGTACACTTATGATATTG+TGG + chr3_3:58068126-58068145 None:intergenic 30.0%
GAAAAGAAAATGGTGTAATC+AGG + chr3_3:58068251-58068270 None:intergenic 30.0%
TGGAGGATTTGAAAAGAAAA+TGG + chr3_3:58068261-58068280 None:intergenic 30.0%
TACATTAGACAATGACTTAG+GGG + chr3_3:58068307-58068326 None:intergenic 30.0%
CTACATTAGACAATGACTTA+GGG + chr3_3:58068308-58068327 None:intergenic 30.0%
ACTACATTAGACAATGACTT+AGG + chr3_3:58068309-58068328 None:intergenic 30.0%
AGTCATTGTCTAATGTAGTT+CGG - chr3_3:58068310-58068329 Msa0460600:intron 30.0%
!!! TGGGGGAGTATTTTTTTAAT+TGG + chr3_3:58069246-58069265 None:intergenic 30.0%
! AGTTGCTTCTAACTTGTATA+TGG - chr3_3:58069277-58069296 Msa0460600:intron 30.0%
CAGAACAAAAGAAAACTAGA+GGG - chr3_3:58069442-58069461 Msa0460600:intron 30.0%
ATATATATGTACCTGGACAT+TGG + chr3_3:58069503-58069522 None:intergenic 30.0%
! GTTTTCGAACTATTTGAAAG+AGG - chr3_3:58069543-58069562 Msa0460600:intron 30.0%
AAGTGAAGGATACTATGTAA+TGG - chr3_3:58069653-58069672 Msa0460600:intron 30.0%
TCTCCTTGTTGAAAAGAATA+AGG - chr3_3:58069782-58069801 Msa0460600:intron 30.0%
GTTGAAAAGAATAAGGAAAC+TGG - chr3_3:58069789-58069808 Msa0460600:intron 30.0%
! GACATTATGGAAGTTTTTGA+AGG + chr3_3:58069836-58069855 None:intergenic 30.0%
!! TCGAGTTCTGGATAAATAAA+TGG + chr3_3:58069965-58069984 None:intergenic 30.0%
AATGTTAGTGGTCACAAATA+CGG - chr3_3:58070019-58070038 Msa0460600:intron 30.0%
ATCTTTCACATCAACTATCT+AGG - chr3_3:58070106-58070125 Msa0460600:intron 30.0%
TTCCAATTATGTGTTACCTT+TGG + chr3_3:58070164-58070183 None:intergenic 30.0%
TAACACATAATTGGAACACT+TGG - chr3_3:58070168-58070187 Msa0460600:intron 30.0%
TAGCTATTGAAACTTGGATA+TGG + chr3_3:58070409-58070428 None:intergenic 30.0%
TTCACAAAATTATGCAATGC+AGG - chr3_3:58070481-58070500 Msa0460600:intron 30.0%
CAACATGATAGTACTAAAAG+AGG - chr3_3:58070714-58070733 Msa0460600:intron 30.0%
GAAATTCATCAAAGTTTGTG+TGG + chr3_3:58070816-58070835 None:intergenic 30.0%
CATGAAGTTGTGAAAGATAA+TGG - chr3_3:58071054-58071073 Msa0460600:intron 30.0%
! GAGAGAAAGTATGTTTGTGT+TGG + chr3_3:58065496-58065515 None:intergenic 35.0%
AACGATGAATTGATGCTTGA+TGG - chr3_3:58065990-58066009 Msa0460600:CDS 35.0%
ATGATGAGTTTATCACACTC+AGG + chr3_3:58066062-58066081 None:intergenic 35.0%
TGAGTGTGATAAACTCATCA+TGG - chr3_3:58066061-58066080 Msa0460600:CDS 35.0%
! TAAAAGGTATGATGTAGGGA+AGG + chr3_3:58066151-58066170 None:intergenic 35.0%
TAAGGAAAGAAGAAGATACC+AGG + chr3_3:58066336-58066355 None:intergenic 35.0%
ATTAAGGCAATGTCAAAGAG+AGG + chr3_3:58066371-58066390 None:intergenic 35.0%
!!! TTTAAGTTTTTGGTGGTGAC+CGG + chr3_3:58066786-58066805 None:intergenic 35.0%
ACATAATATATGCAAGGTCC+AGG - chr3_3:58066953-58066972 Msa0460600:CDS 35.0%
CATAATATATGCAAGGTCCA+GGG - chr3_3:58066954-58066973 Msa0460600:CDS 35.0%
! TCAATTTTAGGCACATCTTG+TGG - chr3_3:58067127-58067146 Msa0460600:CDS 35.0%
! CAATTTTAGGCACATCTTGT+GGG - chr3_3:58067128-58067147 Msa0460600:CDS 35.0%
GGTTGATTATACGTTGTCTA+GGG + chr3_3:58067477-58067496 None:intergenic 35.0%
TGGTTGATTATACGTTGTCT+AGG + chr3_3:58067478-58067497 None:intergenic 35.0%
GTCATTGTCTAATGTAGTTC+GGG - chr3_3:58068311-58068330 Msa0460600:intron 35.0%
!! AAGATGATGACAGTCTTGTT+AGG - chr3_3:58068385-58068404 Msa0460600:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_3:58068847-58068866 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG - chr3_3:58068612-58068631 Msa0460600:intron 35.0%
TTGGCACACAGATTAAGAAA+TGG - chr3_3:58068637-58068656 Msa0460600:intron 35.0%
TGTGAGAGAAAAGTTTGAGA+GGG - chr3_3:58068747-58068766 Msa0460600:intron 35.0%
AAAGTTTGAGAGGGTAAAGT+TGG - chr3_3:58068756-58068775 Msa0460600:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr3_3:58068847-58068866 Msa0460600:intron 35.0%
GACAAATATCATGGGATTGA+GGG - chr3_3:58068926-58068945 Msa0460600:intron 35.0%
GATGTTGGTACTCATGAAAA+GGG + chr3_3:58069036-58069055 None:intergenic 35.0%
AGATGTTGGTACTCATGAAA+AGG + chr3_3:58069037-58069056 None:intergenic 35.0%
! AAGCAACTACTAGTGTTGTT+GGG + chr3_3:58069265-58069284 None:intergenic 35.0%
TGCACCACTTAAAGAAAATG+AGG - chr3_3:58069345-58069364 Msa0460600:intron 35.0%
GCAGAACAAAAGAAAACTAG+AGG - chr3_3:58069441-58069460 Msa0460600:intron 35.0%
ACAATGTTGGGTTTGTCATA+AGG + chr3_3:58069472-58069491 None:intergenic 35.0%
CACAAGATGAACTTCTCATA+AGG + chr3_3:58069574-58069593 None:intergenic 35.0%
ATGAGAAGTTCATCTTGTGA+AGG - chr3_3:58069575-58069594 Msa0460600:intron 35.0%
TTCATCTTGTGAAGGTTTGT+TGG - chr3_3:58069583-58069602 Msa0460600:intron 35.0%
! TCATCTTGTGAAGGTTTGTT+GGG - chr3_3:58069584-58069603 Msa0460600:intron 35.0%
TTTGTTGGGAGAAATTTGCA+AGG - chr3_3:58069598-58069617 Msa0460600:intron 35.0%
! ATTTGCAAGGTACTTTGAAG+TGG - chr3_3:58069611-58069630 Msa0460600:intron 35.0%
!! CTTTGAAGTGGAATTGAAAG+AGG - chr3_3:58069623-58069642 Msa0460600:intron 35.0%
AAAGAGGTTAAGCTAAGTGA+AGG - chr3_3:58069639-58069658 Msa0460600:intron 35.0%
TTATTTATCCAGAACTCGAG+TGG - chr3_3:58069966-58069985 Msa0460600:intron 35.0%
TATTTATCCAGAACTCGAGT+GGG - chr3_3:58069967-58069986 Msa0460600:intron 35.0%
ACATTGATACTCTTCACCAA+TGG + chr3_3:58070004-58070023 None:intergenic 35.0%
!! GTGAAGAGTATCAATGTTAG+TGG - chr3_3:58070007-58070026 Msa0460600:intron 35.0%
ATGTGAAAGATGAGTTCTTC+AGG + chr3_3:58070097-58070116 None:intergenic 35.0%
CTCCAAAGGTAACACATAAT+TGG - chr3_3:58070159-58070178 Msa0460600:intron 35.0%
TACTACCAACTAATACGTCT+TGG - chr3_3:58070526-58070545 Msa0460600:intron 35.0%
CATAACCAAGACGTATTAGT+TGG + chr3_3:58070534-58070553 None:intergenic 35.0%
ACTAATACGTCTTGGTTATG+AGG - chr3_3:58070534-58070553 Msa0460600:intron 35.0%
! GTATGTAAAAGGGGTATGTT+TGG + chr3_3:58070572-58070591 None:intergenic 35.0%
AAAAGAGGGACTCGAAAAAA+TGG - chr3_3:58070729-58070748 Msa0460600:intron 35.0%
AAAGAGGGACTCGAAAAAAT+GGG - chr3_3:58070730-58070749 Msa0460600:intron 35.0%
CTTTCTCTATATCAGCTACA+AGG + chr3_3:58070966-58070985 None:intergenic 35.0%
! GAAAGATAATGGTCAAGTAG+TGG - chr3_3:58071065-58071084 Msa0460600:intron 35.0%
AGAGAGAAATTACTGCGATT+TGG - chr3_3:58071115-58071134 Msa0460600:intron 35.0%
GATTTGGAAGAAGTTTGTGA+TGG - chr3_3:58071131-58071150 Msa0460600:intron 35.0%
TCTATGATTCTCATGATGAG+TGG - chr3_3:58071305-58071324 Msa0460600:CDS 35.0%
TTCTCTCATTCTCACAACCA+TGG - chr3_3:58065509-58065528 Msa0460600:three_prime_UTR 40.0%
! AAGTGAAGTTCTGACATAGC+GGG + chr3_3:58065589-58065608 None:intergenic 40.0%
! GAAGTGAAGTTCTGACATAG+CGG + chr3_3:58065590-58065609 None:intergenic 40.0%
ATGTCAGAACTTCACTTCCT+AGG - chr3_3:58065592-58065611 Msa0460600:three_prime_UTR 40.0%
!! GTTGATGATCACATGAAGTG+AGG + chr3_3:58065720-58065739 None:intergenic 40.0%
TGATCATCAGACGAAGACAA+AGG + chr3_3:58065744-58065763 None:intergenic 40.0%
TCCTTTGGTATAGACTCATC+TGG + chr3_3:58065951-58065970 None:intergenic 40.0%
ATTTGGTATGCTGCATCCTT+TGG + chr3_3:58065966-58065985 None:intergenic 40.0%
TGGAAACCCTAGATTGAACT+TGG - chr3_3:58066010-58066029 Msa0460600:CDS 40.0%
AGGATGCCAAGTTCAATCTA+GGG + chr3_3:58066019-58066038 None:intergenic 40.0%
AAGGATGCCAAGTTCAATCT+AGG + chr3_3:58066020-58066039 None:intergenic 40.0%
ATCCTTTGTGACAACTTGGA+TGG - chr3_3:58066034-58066053 Msa0460600:CDS 40.0%
GTCAACGTAGTTCTTGTTGA+TGG + chr3_3:58066090-58066109 None:intergenic 40.0%
CAACAAGAACTACGTTGACA+TGG - chr3_3:58066091-58066110 Msa0460600:CDS 40.0%
ATAAACACAAGTTGCGCGTT+AGG - chr3_3:58066277-58066296 Msa0460600:intron 40.0%
AGGAATTGGGGAGTAGTTAA+CGG + chr3_3:58066444-58066463 None:intergenic 40.0%
!!! TTAAGTTTTTGGTGGTGACC+GGG + chr3_3:58066785-58066804 None:intergenic 40.0%
TATGTATAGCTAAGCTCACG+AGG + chr3_3:58066938-58066957 None:intergenic 40.0%
!!! TCCTGACTTATTTTTTGCGG+TGG + chr3_3:58066992-58067011 None:intergenic 40.0%
GTTGTGAATGCCAATCTTAG+AGG - chr3_3:58067971-58067990 Msa0460600:intron 40.0%
ATAACACTCCGGTGATATTG+TGG - chr3_3:58068074-58068093 Msa0460600:intron 40.0%
GTAACCAACCACAATATCAC+CGG + chr3_3:58068085-58068104 None:intergenic 40.0%
CATTTGGATGACATTGTGGT+TGG + chr3_3:58068225-58068244 None:intergenic 40.0%
AACAAGACTGTCATGAATGG+AGG + chr3_3:58068278-58068297 None:intergenic 40.0%
CCTAACAAGACTGTCATGAA+TGG + chr3_3:58068281-58068300 None:intergenic 40.0%
!! CCATTCATGACAGTCTTGTT+AGG - chr3_3:58068278-58068297 Msa0460600:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_3:58068851-58068870 None:intergenic 40.0%
GTGTGAGAGAAAAGTTTGAG+AGG - chr3_3:58068746-58068765 Msa0460600:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_3:58068851-58068870 Msa0460600:intron 40.0%
AACGGAGGGAGTAACATTAA+AGG - chr3_3:58068865-58068884 Msa0460600:intron 40.0%
CGACAAATATCATGGGATTG+AGG - chr3_3:58068925-58068944 Msa0460600:intron 40.0%
GTGGCATCATACAAAGATGT+TGG + chr3_3:58069051-58069070 None:intergenic 40.0%
! TATGATGCCACTGTTAGCTT+TGG - chr3_3:58069060-58069079 Msa0460600:intron 40.0%
TTATTGGATGAGGACAGAGT+AGG - chr3_3:58069185-58069204 Msa0460600:intron 40.0%
! AGCAACTACTAGTGTTGTTG+GGG + chr3_3:58069264-58069283 None:intergenic 40.0%
GAAGCAACTACTAGTGTTGT+TGG + chr3_3:58069266-58069285 None:intergenic 40.0%
! GCAGCCTCATTTTCTTTAAG+TGG + chr3_3:58069352-58069371 None:intergenic 40.0%
AAAGAAAATGAGGCTGCAGT+TGG - chr3_3:58069355-58069374 Msa0460600:intron 40.0%
TCAGAGGCTATAATGTTAGC+TGG - chr3_3:58069397-58069416 Msa0460600:intron 40.0%
GGCTATAATGTTAGCTGGAT+TGG - chr3_3:58069402-58069421 Msa0460600:intron 40.0%
!! TAGCTGGATTGGCATTCAAA+AGG - chr3_3:58069413-58069432 Msa0460600:intron 40.0%
GATTGGCATTCAAAAGGAAG+TGG - chr3_3:58069419-58069438 Msa0460600:intron 40.0%
!! CTATGTAATGGACCCTCAAA+AGG - chr3_3:58069665-58069684 Msa0460600:intron 40.0%
ATCCTTGGTTCAACGCTAAA+TGG - chr3_3:58069729-58069748 Msa0460600:intron 40.0%
TACTCTTCACCAATGGTAAG+CGG + chr3_3:58069997-58070016 None:intergenic 40.0%
! AAATACGGTCTTGTCTATGC+TGG - chr3_3:58070034-58070053 Msa0460600:intron 40.0%
TTGTCTATGCTGGAATTGGT+TGG - chr3_3:58070044-58070063 Msa0460600:intron 40.0%
TGTCTATGCTGGAATTGGTT+GGG - chr3_3:58070045-58070064 Msa0460600:intron 40.0%
TTTGGAGAAGTTGAGGGTAA+AGG + chr3_3:58070146-58070165 None:intergenic 40.0%
TTTACCCTCAACTTCTCCAA+AGG - chr3_3:58070145-58070164 Msa0460600:intron 40.0%
! GTTACCTTTGGAGAAGTTGA+GGG + chr3_3:58070152-58070171 None:intergenic 40.0%
! TGTTACCTTTGGAGAAGTTG+AGG + chr3_3:58070153-58070172 None:intergenic 40.0%
! TCGAAATCCACAAAAGTGCA+CGG + chr3_3:58070220-58070239 None:intergenic 40.0%
CGATCTAGATTTCCTGATTG+TGG - chr3_3:58070378-58070397 Msa0460600:intron 40.0%
GATATGGATTTGCCACAATC+AGG + chr3_3:58070393-58070412 None:intergenic 40.0%
!! TCTTTGCATCAACTTGTTGC+AGG - chr3_3:58070660-58070679 Msa0460600:intron 40.0%
!! CTTTGCATCAACTTGTTGCA+GGG - chr3_3:58070661-58070680 Msa0460600:intron 40.0%
!! TTTGCATCAACTTGTTGCAG+GGG - chr3_3:58070662-58070681 Msa0460600:intron 40.0%
! GCAGGGGTATAAAAATGTGA+TGG - chr3_3:58070678-58070697 Msa0460600:intron 40.0%
AAGAGGGACTCGAAAAAATG+GGG - chr3_3:58070731-58070750 Msa0460600:intron 40.0%
AACATTGTGTCGAAAGACGA+CGG - chr3_3:58070760-58070779 Msa0460600:intron 40.0%
!! TTCAAATCTCCGACTTGTTG+AGG - chr3_3:58070833-58070852 Msa0460600:CDS 40.0%
CCTAATGACAACGCGTAAAA+CGG + chr3_3:58070914-58070933 None:intergenic 40.0%
! CGTTTTACGCGTTGTCATTA+GGG - chr3_3:58070912-58070931 Msa0460600:CDS 40.0%
TCATTAGGGAGGATTTCTCA+AGG - chr3_3:58070926-58070945 Msa0460600:CDS 40.0%
GCGAGGATAAAGATGATAAG+TGG - chr3_3:58071012-58071031 Msa0460600:intron 40.0%
!! GGTTGCTAAAAAGAGTGCTT+TGG - chr3_3:58071086-58071105 Msa0460600:intron 40.0%
!! GGAAGAAGTTTGTGATGGAT+AGG - chr3_3:58071136-58071155 Msa0460600:intron 40.0%
TTGCTAGAATCAGCTTGGAA+TGG - chr3_3:58071188-58071207 Msa0460600:intron 40.0%
AATCAGCTTGGAATGGAACA+AGG - chr3_3:58071195-58071214 Msa0460600:intron 40.0%
ATCAGCTTGGAATGGAACAA+GGG - chr3_3:58071196-58071215 Msa0460600:intron 40.0%
GCCAGATGAGTCTATACCAA+AGG - chr3_3:58065947-58065966 Msa0460600:CDS 45.0%
TGGCATCCTTTGTGACAACT+TGG - chr3_3:58066030-58066049 Msa0460600:CDS 45.0%
CTCCATCCAAGTTGTCACAA+AGG + chr3_3:58066039-58066058 None:intergenic 45.0%
ATTGGGGAGTAGTTAACGGA+GGG + chr3_3:58066440-58066459 None:intergenic 45.0%
AATTGGGGAGTAGTTAACGG+AGG + chr3_3:58066441-58066460 None:intergenic 45.0%
!!! TAAGTTTTTGGTGGTGACCG+GGG + chr3_3:58066784-58066803 None:intergenic 45.0%
!!! ACTTATTTTTTGCGGTGGCC+GGG + chr3_3:58066987-58067006 None:intergenic 45.0%
!!! GACTTATTTTTTGCGGTGGC+CGG + chr3_3:58066988-58067007 None:intergenic 45.0%
GCCACCGCAAAAAATAAGTC+AGG - chr3_3:58066988-58067007 Msa0460600:intron 45.0%
GACATTGTGGTTGGCGATAT+TGG + chr3_3:58068216-58068235 None:intergenic 45.0%
GCAGCATTTGGATGACATTG+TGG + chr3_3:58068229-58068248 None:intergenic 45.0%
TGGTGTAATCAGGCAGCATT+TGG + chr3_3:58068241-58068260 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_3:58068850-58068869 None:intergenic 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG - chr3_3:58068618-58068637 Msa0460600:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_3:58068850-58068869 Msa0460600:intron 45.0%
! CTTTGGAGGTCTCAATACTC+AGG - chr3_3:58069077-58069096 Msa0460600:intron 45.0%
! GCAACTACTAGTGTTGTTGG+GGG + chr3_3:58069263-58069282 None:intergenic 45.0%
GACAAACCCAACATTGTCAC+TGG - chr3_3:58069475-58069494 Msa0460600:intron 45.0%
TTGGCTCCAGTGACAATGTT+GGG + chr3_3:58069484-58069503 None:intergenic 45.0%
! ATTGGCTCCAGTGACAATGT+TGG + chr3_3:58069485-58069504 None:intergenic 45.0%
! CCAATTCCACAGCCTTTTGA+GGG + chr3_3:58069680-58069699 None:intergenic 45.0%
! ACCAATTCCACAGCCTTTTG+AGG + chr3_3:58069681-58069700 None:intergenic 45.0%
TCAAAAGGCTGTGGAATTGG+TGG - chr3_3:58069680-58069699 Msa0460600:intron 45.0%
AAGGATAGCAGCAACACAGA+TGG + chr3_3:58069715-58069734 None:intergenic 45.0%
! ATCTGTGTTGCTGCTATCCT+TGG - chr3_3:58069714-58069733 Msa0460600:intron 45.0%
! CTCCATTTAGCGTTGAACCA+AGG + chr3_3:58069734-58069753 None:intergenic 45.0%
ATGGGACACTCCTATTCATG+TGG - chr3_3:58069913-58069932 Msa0460600:intron 45.0%
CTAGCTGCATCCACATGAAT+AGG + chr3_3:58069926-58069945 None:intergenic 45.0%
ATTCATGTGGATGCAGCTAG+TGG - chr3_3:58069926-58069945 Msa0460600:intron 45.0%
! GGTCTTGTCTATGCTGGAAT+TGG - chr3_3:58070040-58070059 Msa0460600:intron 45.0%
CTGGAATTGGTTGGGCTATT+TGG - chr3_3:58070053-58070072 Msa0460600:intron 45.0%
TTGGGCTATTTGGAGAAGCA+AGG - chr3_3:58070063-58070082 Msa0460600:intron 45.0%
GAGAAGTTGAGGGTAAAGGT+AGG + chr3_3:58070142-58070161 None:intergenic 45.0%
! GAAATCCACAAAAGTGCACG+GGG + chr3_3:58070218-58070237 None:intergenic 45.0%
! CGAAATCCACAAAAGTGCAC+GGG + chr3_3:58070219-58070238 None:intergenic 45.0%
! TTTTGTGGATTTCGATCCCC+TGG - chr3_3:58070225-58070244 Msa0460600:intron 45.0%
ATGTGCCATAGTCGTGTGAT+CGG - chr3_3:58070259-58070278 Msa0460600:intron 45.0%
TAGTTCCGATCACACGACTA+TGG + chr3_3:58070267-58070286 None:intergenic 45.0%
TTCAATGTGAAGGCCACCAA+AGG + chr3_3:58070790-58070809 None:intergenic 45.0%
! TTTGGTGGCCTTCACATTGA+AGG - chr3_3:58070789-58070808 Msa0460600:CDS 45.0%
TGTGTGGTCCTTCAATGTGA+AGG + chr3_3:58070800-58070819 None:intergenic 45.0%
ACGGTTATGTGTTGAGCATC+CGG + chr3_3:58070895-58070914 None:intergenic 45.0%
! CCGTTTTACGCGTTGTCATT+AGG - chr3_3:58070911-58070930 Msa0460600:CDS 45.0%
TTTACGCGTTGTCATTAGGG+AGG - chr3_3:58070915-58070934 Msa0460600:CDS 45.0%
AGCTTGATTCACTTACTGCG+AGG - chr3_3:58070995-58071014 Msa0460600:intron 45.0%
! GGTGTTTGCTAGAATCAGCT+TGG - chr3_3:58071183-58071202 Msa0460600:intron 45.0%
!!! AATTTTATTTTAGAATTAAT+TGG + chr3_3:58066863-58066882 None:intergenic 5.0%
!! ACAAAATAAAAAATATTTAT+CGG - chr3_3:58068517-58068536 Msa0460600:intron 5.0%
!!! TAAATAAAATTTCTTTTTAT+TGG - chr3_3:58069169-58069188 Msa0460600:intron 5.0%
! GGCTGTCTTTGAGAGAACCA+TGG + chr3_3:58065529-58065548 None:intergenic 50.0%
GTGGACGGAAACATCAGACT+CGG + chr3_3:58065553-58065572 None:intergenic 50.0%
GGAAGCAAAGGTTGAGTGGA+CGG + chr3_3:58065568-58065587 None:intergenic 50.0%
! TCTGACATAGCGGGAAGCAA+AGG + chr3_3:58065580-58065599 None:intergenic 50.0%
TGATGTAGGGAAGGTCTACC+TGG + chr3_3:58066142-58066161 None:intergenic 50.0%
! AAGGTCTAGGGTTCAAACCC+CGG - chr3_3:58066764-58066783 Msa0460600:CDS 50.0%
!!! CTTATTTTTTGCGGTGGCCG+GGG + chr3_3:58066986-58067005 None:intergenic 50.0%
CACTCCGGTGATATTGTGGT+TGG - chr3_3:58068078-58068097 Msa0460600:intron 50.0%
!! GATGCCACTGTTAGCTTTGG+AGG - chr3_3:58069063-58069082 Msa0460600:intron 50.0%
GAGACCTCCAAAGCTAACAG+TGG + chr3_3:58069070-58069089 None:intergenic 50.0%
! AATGAGGCTGCAGTTGGTGT+TGG - chr3_3:58069361-58069380 Msa0460600:intron 50.0%
AATGGACCCTCAAAAGGCTG+TGG - chr3_3:58069671-58069690 Msa0460600:intron 50.0%
CCCTCAAAAGGCTGTGGAAT+TGG - chr3_3:58069677-58069696 Msa0460600:intron 50.0%
GTGGGATTTCCGCTTACCAT+TGG - chr3_3:58069985-58070004 Msa0460600:intron 50.0%
! ACAAACCCCGTGCACTTTTG+TGG - chr3_3:58070210-58070229 Msa0460600:intron 50.0%
! CACATGCTTGCTAGATCCAG+GGG + chr3_3:58070244-58070263 None:intergenic 50.0%
! GCACATGCTTGCTAGATCCA+GGG + chr3_3:58070245-58070264 None:intergenic 50.0%
GAAAGACGACGGTGTACCTT+TGG - chr3_3:58070771-58070790 Msa0460600:intron 50.0%
GTTATGTGTTGAGCATCCGG+GGG + chr3_3:58070892-58070911 None:intergenic 50.0%
GGTTATGTGTTGAGCATCCG+GGG + chr3_3:58070893-58070912 None:intergenic 50.0%
CGGTTATGTGTTGAGCATCC+GGG + chr3_3:58070894-58070913 None:intergenic 50.0%
GACGGAAACATCAGACTCGG+AGG + chr3_3:58065550-58065569 None:intergenic 55.0%
AGCGGGAAGCAAAGGTTGAG+TGG + chr3_3:58065572-58065591 None:intergenic 55.0%
TACCTGGAGCTCAGTGGTGA+CGG + chr3_3:58066126-58066145 None:intergenic 55.0%
AAGGTCTACCTGGAGCTCAG+TGG + chr3_3:58066132-58066151 None:intergenic 55.0%
AAGGTCCAGGGTTCAAACCC+CGG - chr3_3:58066966-58066985 Msa0460600:CDS 55.0%
!! GCAGTTGGTGTTGGCACTGT+TGG - chr3_3:58069370-58069389 Msa0460600:intron 55.0%
!! TGGCACTGTTGGCTCATCAG+AGG - chr3_3:58069381-58069400 Msa0460600:intron 55.0%
TGTCACTGGAGCCAATGTCC+AGG - chr3_3:58069489-58069508 Msa0460600:intron 55.0%
CATGTGGATGCAGCTAGTGG+TGG - chr3_3:58069929-58069948 Msa0460600:intron 55.0%
CGGAAATCCCACTCGAGTTC+TGG + chr3_3:58069977-58069996 None:intergenic 55.0%
! GGCACATGCTTGCTAGATCC+AGG + chr3_3:58070246-58070265 None:intergenic 55.0%
AGACGACGGTGTACCTTTGG+TGG - chr3_3:58070774-58070793 Msa0460600:intron 55.0%
!! TCCGACTTGTTGAGGCGCTT+CGG - chr3_3:58070841-58070860 Msa0460600:CDS 55.0%
! TCCGAAGCGCCTCAACAAGT+CGG + chr3_3:58070845-58070864 None:intergenic 55.0%
! ACTTGTTGAGGCGCTTCGGA+TGG - chr3_3:58070845-58070864 Msa0460600:CDS 55.0%
ACCTGGAGCTCAGTGGTGAC+GGG + chr3_3:58066125-58066144 None:intergenic 60.0%
TCCAGCATACAGCATGCCCC+CGG - chr3_3:58070873-58070892 Msa0460600:CDS 60.0%
! CCTGGAGCTCAGTGGTGACG+GGG + chr3_3:58066124-58066143 None:intergenic 65.0%
! TCCGGGGGCATGCTGTATGC+TGG + chr3_3:58070877-58070896 None:intergenic 65.0%
CCCCGTCACCACTGAGCTCC+AGG - chr3_3:58066121-58066140 Msa0460600:CDS 70.0%
GGTGGCCGGGGTTTGAACCC+TGG + chr3_3:58066974-58066993 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 58065479 58071439 58065479 ID=Msa0460600;Name=Msa0460600
chr3_3 mRNA 58065479 58071439 58065479 ID=Msa0460600-mRNA-1;Parent=Msa0460600;Name=Msa0460600-mRNA-1;_AED=0.25;_eAED=0.25;_QI=49|1|1|1|1|1|7|245|508
chr3_3 exon 58065479 58066236 58065479 ID=Msa0460600-mRNA-1:exon:12076;Parent=Msa0460600-mRNA-1
chr3_3 exon 58066363 58066415 58066363 ID=Msa0460600-mRNA-1:exon:12075;Parent=Msa0460600-mRNA-1
chr3_3 exon 58066752 58067005 58066752 ID=Msa0460600-mRNA-1:exon:12074;Parent=Msa0460600-mRNA-1
chr3_3 exon 58067107 58067321 58067107 ID=Msa0460600-mRNA-1:exon:12073;Parent=Msa0460600-mRNA-1
chr3_3 exon 58067408 58067608 58067408 ID=Msa0460600-mRNA-1:exon:12072;Parent=Msa0460600-mRNA-1
chr3_3 exon 58070776 58070980 58070776 ID=Msa0460600-mRNA-1:exon:12071;Parent=Msa0460600-mRNA-1
chr3_3 exon 58071305 58071439 58071305 ID=Msa0460600-mRNA-1:exon:12070;Parent=Msa0460600-mRNA-1
chr3_3 five_prime_UTR 58071391 58071439 58071391 ID=Msa0460600-mRNA-1:five_prime_utr;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58071305 58071390 58071305 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58070776 58070980 58070776 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58067408 58067608 58067408 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58067107 58067321 58067107 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58066752 58067005 58066752 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58066363 58066415 58066363 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 CDS 58065724 58066236 58065724 ID=Msa0460600-mRNA-1:cds;Parent=Msa0460600-mRNA-1
chr3_3 three_prime_UTR 58065479 58065723 58065479 ID=Msa0460600-mRNA-1:three_prime_utr;Parent=Msa0460600-mRNA-1
Gene Sequence

>Msa0460600

ATGGTTCTCTCAAAGACAGCCTCCGAGTCTGATGTTTCCGTCCACTCAACCTTTGCTTCCCGCTATGTCAGAACTTCACTTCCTAGATTCAAGATGCCAGATGAGTCTATACCAAAGGATGCAGCATACCAAATAATAAACGATGAATTGATGCTTGATGGAAACCCTAGATTGAACTTGGCATCCTTTGTGACAACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCTTCCATCAACAAGAACTACGTTGACATGGATGAATACCCCGTCACCACTGAGCTCCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTAAAGAAAATGAGGCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCTATAATGTTAGCTGGATTGGCATTCAAAAGGAAGTGGCAGAACAAAAGAAAACTAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAAGTGGAATTGAAAGAGGTTAAGCTAAGTGAAGGATACTATGTAATGGACCCTCAAAAGGCTGTGGAATTGGTGGATGAGAACACCATCTGTGTTGCTGCTATCCTTGGTTCAACGCTAAATGGAGAGTTTGAAGATGTTAAACGCTTAAACGATCTCCTTGTTGAAAAGAATAAGGAAACTGGATGGGACACTCCTATTCATGTGGATGCAGCTAGTGGTGGTTTCATTGCTCCATTTATTTATCCAGAACTCGAGTGGGATTTCCGCTTACCATTGGTGAAGAGTATCAATGTTAGTGGTCACAAATACGGTCTTGTCTATGCTGGAATTGGTTGGGCTATTTGGAGAAGCAAGGAAGATTTGCCTGAAGAACTCATCTTTCACATCAACTATCTAGGAGCTGATCAACCTACCTTTACCCTCAACTTCTCCAAAGGTTCTAGTCAAGTCATTGCTCAATACTACCAACTAATACGTCTTGGTTATGAGGGGTATAAAAATGTGATGGAAAATTGCAGAGACAACATGATAGTACTAAAAGAGGGACTCGAAAAAATGGGGCGCTTCAACATTGTGTCGAAAGACGACGGTGTACCTTTGGTGGCCTTCACATTGAAGGACCACACAAACTTTGATGAATTTCAAATCTCCGACTTGTTGAGGCGCTTCGGATGGATTGTTCCAGCATACAGCATGCCCCCGGATGCTCAACACATAACCGTTTTACGCGTTGTCATTAGGGAGGATTTCTCAAGGACTTTAGCAGAGCGCCTTGTAGCTGATATAGAGAAAGTGTTGCACGAGCTTGATTCACTTACTGCGAGGATAAAGATGATAAGTGGCACTAGTAGTGTTACAGTTCATGAAGTTGTGAAAGATAATGGTCAAGTAGTGGTTGCTAAAAAGAGTGCTTTGGAGACTCAGAGAGAAATTACTGCGATTTGGAAGAAGTTTGTGATGGATAGGAAGAAGTTGAATGATAAGATGAATGGTGTTTGCTAG

Protein sequence

>Msa0460600

MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPDESIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLKENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKLEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDDGVPLVAFTLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADIEKVLHELDSLTARIKMISGTSSVTVHEVVKDNGQVVVAKKSALETQREITAIWKKFVMDRKKLNDKMNGVC*