Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136270 | KEH44035.1 | 85.315 | 286 | 6 | 2 | 1 | 286 | 1 | 250 | 3.25e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136270 | sp|Q852U6|RHY1A_ARATH | 36.860 | 293 | 128 | 5 | 1 | 281 | 1 | 248 | 2.05e-35 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136270 | A0A072W173 | 85.315 | 286 | 6 | 2 | 1 | 286 | 1 | 250 | 1.55e-166 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041870 | Msa0136270 | 0.904828 | 8.159665e-80 | -8.615850e-47 |
| Msa0043740 | Msa0136270 | 0.814539 | 1.462996e-51 | -8.615850e-47 |
| Msa0089860 | Msa0136270 | 0.948790 | 4.678219e-107 | -8.615850e-47 |
| Msa0090090 | Msa0136270 | 0.821399 | 4.122252e-53 | -8.615850e-47 |
| Msa0136270 | Msa0137560 | 0.821006 | 5.078499e-53 | -8.615850e-47 |
| Msa0136270 | Msa0182560 | 0.806050 | 9.930249e-50 | -8.615850e-47 |
| Msa0136270 | Msa0253960 | 0.809415 | 1.913815e-50 | -8.615850e-47 |
| Msa0136270 | Msa0460600 | 0.819303 | 1.246537e-52 | -8.615850e-47 |
| Msa0136270 | Msa0558570 | 0.828540 | 8.494191e-55 | -8.615850e-47 |
| Msa0136270 | Msa0704560 | 0.842362 | 2.709284e-58 | -8.615850e-47 |
| Msa0136270 | Msa0859040 | 0.801735 | 7.824843e-49 | -8.615850e-47 |
| Msa0136270 | Msa1027910 | 0.824510 | 7.762463e-54 | -8.615850e-47 |
| Msa0136270 | Msa1084890 | 0.827657 | 1.385759e-54 | -8.615850e-47 |
| Msa0136270 | Msa1427000 | 0.830804 | 2.388751e-55 | -8.615850e-47 |
| Msa0136270 | Msa1439780 | 0.842423 | 2.609125e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136270 | MtrunA17_Chr1g0207561 | 85.315 | 286 | 6 | 2 | 1 | 286 | 1 | 250 | 2.99e-170 | 471 |
| Msa0136270 | MtrunA17_Chr2g0305161 | 58.333 | 48 | 20 | 0 | 234 | 281 | 140 | 187 | 1.25e-13 | 68.2 |
| Msa0136270 | MtrunA17_Chr1g0169651 | 47.917 | 48 | 25 | 0 | 234 | 281 | 681 | 728 | 2.83e-11 | 63.9 |
| Msa0136270 | MtrunA17_Chr7g0274741 | 33.333 | 81 | 53 | 1 | 207 | 286 | 70 | 150 | 8.31e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136270 | AT1G49850.1 | 36.860 | 293 | 128 | 5 | 1 | 281 | 1 | 248 | 2.09e-36 | 130 |
| Msa0136270 | AT2G15580.1 | 59.091 | 44 | 18 | 0 | 234 | 277 | 148 | 191 | 7.02e-13 | 66.6 |
| Msa0136270 | AT1G20823.1 | 40.659 | 91 | 45 | 3 | 199 | 282 | 70 | 158 | 8.89e-12 | 63.5 |
| Msa0136270 | AT1G76410.1 | 38.462 | 91 | 47 | 3 | 200 | 283 | 64 | 152 | 8.01e-11 | 60.5 |
Find 98 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGTCCTGGTGGCTTTC+TGG | 0.124154 | 1_3:-68104675 | None:intergenic |
| ACTCTGCTTGTTTGGATCCT+TGG | 0.223649 | 1_3:+68104846 | Msa0136270:CDS |
| GCCACTGGTTCTCTCCTTCA+TGG | 0.270330 | 1_3:-68105108 | None:intergenic |
| TAAATTTCACTCTGCTTGTT+TGG | 0.285473 | 1_3:+68104838 | Msa0136270:CDS |
| CGTTGTAGTGGCGGCGGATA+CGG | 0.287251 | 1_3:-68102661 | None:intergenic |
| CTTTCACTTCCACTTGCTCT+TGG | 0.328518 | 1_3:-68103082 | None:intergenic |
| CTTCAAGATGCAAACAGTTC+AGG | 0.330884 | 1_3:-68104706 | None:intergenic |
| GTTGTAGTGGCGGCGGATAC+GGG | 0.339096 | 1_3:-68102660 | None:intergenic |
| ACTCACTCAATTACAACAAC+AGG | 0.363261 | 1_3:-68105056 | None:intergenic |
| CGATATCATTTCGTCCTAAT+CGG | 0.375748 | 1_3:-68102559 | None:intergenic |
| GCATTGTTTCATTCTATTGA+AGG | 0.376853 | 1_3:-68104925 | None:intergenic |
| ATCAGAATCCAAGGTACTTC+AGG | 0.378655 | 1_3:+68104751 | Msa0136270:CDS |
| GGGAGCCTGTTGATAGAAAC+AGG | 0.405614 | 1_3:+68103158 | Msa0136270:CDS |
| AGGATAAAATATATGATGTA+AGG | 0.408762 | 1_3:+68105133 | Msa0136270:three_prime_UTR |
| TGAAACCTGTTTCTATCAAC+AGG | 0.414171 | 1_3:-68103163 | None:intergenic |
| GCGATACACTGCGACTCTTT+CGG | 0.415466 | 1_3:-68102486 | None:intergenic |
| ATTTATGTCCACATTGCAAA+TGG | 0.420763 | 1_3:-68104820 | None:intergenic |
| ACAACAGGGTTGAAAATACT+TGG | 0.424615 | 1_3:-68105041 | None:intergenic |
| CGCGCAAGTCTCACATCTAC+TGG | 0.427263 | 1_3:-68103109 | None:intergenic |
| TACTGACTTGACTTCTCAAA+TGG | 0.434814 | 1_3:+68104625 | Msa0136270:CDS |
| GTTCCTCTCACACTTTCTCC+AGG | 0.437499 | 1_3:-68103058 | None:intergenic |
| CGGTGGTGATGATGGAAATC+TGG | 0.449253 | 1_3:-68102608 | None:intergenic |
| CGTGTATCGGAAAGATTTGA+TGG | 0.453526 | 1_3:+68102995 | Msa0136270:CDS |
| TGGTTTGTTCATGCAAGAGC+TGG | 0.460636 | 1_3:-68104655 | None:intergenic |
| AGGGCCTCCTGAGTGAGTCC+TGG | 0.461922 | 1_3:-68104686 | None:intergenic |
| CATGGGAGCAAGGCATGTAT+TGG | 0.463348 | 1_3:-68105090 | None:intergenic |
| CCAAGGTACTTCAGGATTGT+GGG | 0.469017 | 1_3:+68104759 | Msa0136270:CDS |
| CAAGGATGCTGCAACGGAGC+TGG | 0.470411 | 1_3:+68104986 | Msa0136270:three_prime_UTR |
| TTCAAGATGCAAACAGTTCA+GGG | 0.472566 | 1_3:-68104705 | None:intergenic |
| GACTCCTTCAGAGGTTGAGA+GGG | 0.475373 | 1_3:+68103137 | Msa0136270:CDS |
| AAGGAGAGAACCAGTGGCAG+AGG | 0.476716 | 1_3:+68105113 | Msa0136270:three_prime_UTR |
| AATGAAGGCGGCGTTGAACC+TGG | 0.477109 | 1_3:+68103040 | Msa0136270:CDS |
| TTTGTATGTCACTGAGTCAC+TGG | 0.478097 | 1_3:+68103520 | Msa0136270:CDS |
| CCACTGGTTCTCTCCTTCAT+GGG | 0.481486 | 1_3:-68105107 | None:intergenic |
| CGTGAAGGCGGTGGTGATGA+TGG | 0.483202 | 1_3:-68102616 | None:intergenic |
| AGGGTACGTGGTGACGGAGG+CGG | 0.483634 | 1_3:-68102688 | None:intergenic |
| TCCAAGGTACTTCAGGATTG+TGG | 0.484189 | 1_3:+68104758 | Msa0136270:CDS |
| AGCAAGGCATGTATTGGCTC+CGG | 0.490893 | 1_3:-68105084 | None:intergenic |
| TCAGGATTGTGGGATATGCT+TGG | 0.490906 | 1_3:+68104769 | Msa0136270:CDS |
| CTTCAGAACTATTCCACATC+AGG | 0.492422 | 1_3:+68102531 | Msa0136270:CDS |
| GTAATTGAGTGAGTCGAAAC+CGG | 0.501618 | 1_3:+68105065 | Msa0136270:three_prime_UTR |
| GATATGCTTGGAATCTTTCG+TGG | 0.503539 | 1_3:+68104781 | Msa0136270:CDS |
| CTGGCTGACACAGATTCCCT+TGG | 0.506722 | 1_3:+68103539 | Msa0136270:CDS |
| ACTATACATCTTCGACAGTA+AGG | 0.510903 | 1_3:-68104890 | None:intergenic |
| TTCTCTCCTTCATGGGAGCA+AGG | 0.517548 | 1_3:-68105100 | None:intergenic |
| CCCACAATCCTGAAGTACCT+TGG | 0.517671 | 1_3:-68104759 | None:intergenic |
| CACATCAGGAGACACCGATT+AGG | 0.521300 | 1_3:+68102545 | Msa0136270:CDS |
| TGCTTGGAATCTTTCGTGGA+TGG | 0.531615 | 1_3:+68104785 | Msa0136270:CDS |
| GTAATTAAAGAGTCCTCAGT+TGG | 0.533031 | 1_3:-68104605 | None:intergenic |
| CGTCGGAGTCGTGAAGGCGG+TGG | 0.536072 | 1_3:-68102625 | None:intergenic |
| GTACGTGGTGACGGAGGCGG+CGG | 0.538987 | 1_3:-68102685 | None:intergenic |
| AGACTCCTTCAGAGGTTGAG+AGG | 0.543708 | 1_3:+68103136 | Msa0136270:CDS |
| GATCCTTGGATTCGCAGTTG+TGG | 0.545640 | 1_3:+68104860 | Msa0136270:CDS |
| CTAATCGGTGTCTCCTGATG+TGG | 0.556727 | 1_3:-68102544 | None:intergenic |
| GCCTCCTGAGTGAGTCCTGG+TGG | 0.559542 | 1_3:-68104683 | None:intergenic |
| GCTCCCCTCTCAACCTCTGA+AGG | 0.559895 | 1_3:-68103141 | None:intergenic |
| CGCGAGAAAGACTCCTTCAG+AGG | 0.559940 | 1_3:+68103128 | Msa0136270:CDS |
| AGAGGAACTCCAAGAGCAAG+TGG | 0.560537 | 1_3:+68103073 | Msa0136270:CDS |
| GGAGGCGGCGGACGTTGTAG+TGG | 0.563566 | 1_3:-68102673 | None:intergenic |
| GGCGGACGTTGTAGTGGCGG+CGG | 0.567742 | 1_3:-68102667 | None:intergenic |
| CGTCGATCTCTAGTAAATGA+AGG | 0.571288 | 1_3:+68103025 | Msa0136270:CDS |
| GGCGGCGGACGTTGTAGTGG+CGG | 0.571784 | 1_3:-68102670 | None:intergenic |
| AATCTGGAGAAGGTGAAGAG+TGG | 0.578304 | 1_3:-68102592 | None:intergenic |
| TCTCCACAACTGCGAATCCA+AGG | 0.579205 | 1_3:-68104863 | None:intergenic |
| TACATGCCTTGCTCCCATGA+AGG | 0.580805 | 1_3:+68105094 | Msa0136270:three_prime_UTR |
| ACAGGAAGGGTACGTGGTGA+CGG | 0.583288 | 1_3:-68102694 | None:intergenic |
| TTTACAGTATCGATTCTTCG+TGG | 0.585056 | 1_3:+68102425 | Msa0136270:five_prime_UTR |
| CTGTGTCAAGGATGCTGCAA+CGG | 0.589797 | 1_3:+68104980 | Msa0136270:three_prime_UTR |
| GGATAAAATATATGATGTAA+GGG | 0.591614 | 1_3:+68105134 | Msa0136270:three_prime_UTR |
| CATCGTCGTCGGAGTCGTGA+AGG | 0.593058 | 1_3:-68102631 | None:intergenic |
| TATCGGAAAGATTTGATGGA+AGG | 0.593860 | 1_3:+68102999 | Msa0136270:CDS |
| TGATAGAGATTCAGTGGACG+AGG | 0.594106 | 1_3:+68104553 | Msa0136270:CDS |
| TGATACGGAATCAGAATCCA+AGG | 0.596863 | 1_3:+68104742 | Msa0136270:CDS |
| AAAGCCACCAGGACTCACTC+AGG | 0.599767 | 1_3:+68104679 | Msa0136270:CDS |
| GAGTGAGTAACAAGGGACCA+AGG | 0.601959 | 1_3:-68103556 | None:intergenic |
| ACTTGACTTCTCAAATGGCA+AGG | 0.603031 | 1_3:+68104630 | Msa0136270:CDS |
| TGTTTGTTAGGAGCGTGTAT+CGG | 0.603047 | 1_3:+68102982 | Msa0136270:intron |
| GCAAAGTGATAGAGATTCAG+TGG | 0.604810 | 1_3:+68104547 | Msa0136270:CDS |
| AGTGAGTAACAAGGGACCAA+GGG | 0.604900 | 1_3:-68103555 | None:intergenic |
| CAACAGGGTTGAAAATACTT+GGG | 0.617860 | 1_3:-68105040 | None:intergenic |
| TACAAATGAGTGAGTAACAA+GGG | 0.628895 | 1_3:-68103563 | None:intergenic |
| CGTCGTCGGAGTCGTGAAGG+CGG | 0.629570 | 1_3:-68102628 | None:intergenic |
| GGAAGGGTACGTGGTGACGG+AGG | 0.634609 | 1_3:-68102691 | None:intergenic |
| GAACAAACCAGAAAGCCACC+AGG | 0.634998 | 1_3:+68104668 | Msa0136270:CDS |
| TTGTAGTGGCGGCGGATACG+GGG | 0.635138 | 1_3:-68102659 | None:intergenic |
| ACGGGGAGAATCATCGTCGT+CGG | 0.635388 | 1_3:-68102642 | None:intergenic |
| GAACCTGGAGAAAGTGTGAG+AGG | 0.649571 | 1_3:+68103055 | Msa0136270:CDS |
| CCCATGAAGGAGAGAACCAG+TGG | 0.652765 | 1_3:+68105107 | Msa0136270:three_prime_UTR |
| CTCACTCAATTACAACAACA+GGG | 0.657280 | 1_3:-68105055 | None:intergenic |
| TACACTGCGACTCTTTCGGT+CGG | 0.658829 | 1_3:-68102482 | None:intergenic |
| AAACTGATCCATTTGCAATG+TGG | 0.665356 | 1_3:+68104812 | Msa0136270:CDS |
| TGATGATGGAAATCTGGAGA+AGG | 0.668735 | 1_3:-68102602 | None:intergenic |
| ATCAAGTGAAGTTCCAACTG+AGG | 0.674729 | 1_3:+68104592 | Msa0136270:CDS |
| ATACAAATGAGTGAGTAACA+AGG | 0.678160 | 1_3:-68103564 | None:intergenic |
| AAGAATCGATACTGTAAATG+CGG | 0.682308 | 1_3:-68102420 | None:intergenic |
| ACTCCTTCAGAGGTTGAGAG+GGG | 0.685216 | 1_3:+68103138 | Msa0136270:CDS |
| GCCACCAGGACTCACTCAGG+AGG | 0.692200 | 1_3:+68104682 | Msa0136270:CDS |
| CGATCTCTAGTAAATGAAGG+CGG | 0.728434 | 1_3:+68103028 | Msa0136270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTATTACAATTC+TGG | + | chr1_3:68102812-68102831 | Msa0136270:intron | 10.0% |
| !!! | AAGAAAATAGAAATAGTTTT+TGG | - | chr1_3:68103209-68103228 | None:intergenic | 15.0% |
| !!! | AAGCAAGAAATTATATTTTT+TGG | - | chr1_3:68104008-68104027 | None:intergenic | 15.0% |
| !!! | TTTTCTGATTTCTAATTATT+GGG | + | chr1_3:68104231-68104250 | Msa0136270:intron | 15.0% |
| !!! | ACAAGTTCTTTAAAAAAAAA+AGG | - | chr1_3:68104296-68104315 | None:intergenic | 15.0% |
| !!! | TAATGTATTTTGTGTTTGTT+AGG | + | chr1_3:68102970-68102989 | Msa0136270:intron | 20.0% |
| !!! | TTGCTACTTATATAATTGTT+AGG | + | chr1_3:68103284-68103303 | Msa0136270:intron | 20.0% |
| !! | TACTTATATAATTGTTAGGT+TGG | + | chr1_3:68103288-68103307 | Msa0136270:intron | 20.0% |
| !! | ACTTATATAATTGTTAGGTT+GGG | + | chr1_3:68103289-68103308 | Msa0136270:intron | 20.0% |
| !!! | GACAATTTTAATTACAATCA+CGG | - | chr1_3:68103370-68103389 | None:intergenic | 20.0% |
| !! | TGTAATTAAAATTGTCTCTA+AGG | + | chr1_3:68103374-68103393 | Msa0136270:intron | 20.0% |
| !! | TACATTGATCTATATTTAAG+TGG | - | chr1_3:68103967-68103986 | None:intergenic | 20.0% |
| !!! | CAAGAAATTATATTTTTTGG+AGG | - | chr1_3:68104005-68104024 | None:intergenic | 20.0% |
| !! | AAAATATAATTTCTTGCTTG+TGG | + | chr1_3:68104009-68104028 | Msa0136270:intron | 20.0% |
| !!! | CTTTTCTGATTTCTAATTAT+TGG | + | chr1_3:68104230-68104249 | Msa0136270:intron | 20.0% |
| !! | TTTCTGATTTCTAATTATTG+GGG | + | chr1_3:68104232-68104251 | Msa0136270:intron | 20.0% |
| !! | TAAACTCAACAAAATTTGAA+GGG | - | chr1_3:68104263-68104282 | None:intergenic | 20.0% |
| !! | ATAAACTCAACAAAATTTGA+AGG | - | chr1_3:68104264-68104283 | None:intergenic | 20.0% |
| !! | AGGATAAAATATATGATGTA+AGG | + | chr1_3:68105133-68105152 | Msa0136270:three_prime_UTR | 20.0% |
| !! | GGATAAAATATATGATGTAA+GGG | + | chr1_3:68105134-68105153 | Msa0136270:three_prime_UTR | 20.0% |
| ! | TATGTGTAGGAAAATAAAAC+AGG | - | chr1_3:68102715-68102734 | None:intergenic | 25.0% |
| ! | AACATAATATGTGTATGTGT+AGG | - | chr1_3:68102728-68102747 | None:intergenic | 25.0% |
| ! | AGTAGAAGATGATGAAAATA+GGG | - | chr1_3:68102757-68102776 | None:intergenic | 25.0% |
| ! | TATTCAAATTCATAATTGCC+AGG | + | chr1_3:68102780-68102799 | Msa0136270:intron | 25.0% |
| !! | ACTAACTAGTCTAACTTAAA+TGG | + | chr1_3:68102924-68102943 | Msa0136270:intron | 25.0% |
| ! | AGATTCTATTGAAAATTGCA+TGG | + | chr1_3:68103765-68103784 | Msa0136270:intron | 25.0% |
| ! | AGAGACATAATTGTAACATT+AGG | + | chr1_3:68103799-68103818 | Msa0136270:intron | 25.0% |
| ! | GATCGTGAAAGAAAAAAAAA+AGG | - | chr1_3:68103914-68103933 | None:intergenic | 25.0% |
| !!! | ATTAAGTTTTGGTCAGTATT+AGG | + | chr1_3:68104108-68104127 | Msa0136270:intron | 25.0% |
| !!! | TTAAGTTTTGGTCAGTATTA+GGG | + | chr1_3:68104109-68104128 | Msa0136270:intron | 25.0% |
| !! | CAAATTTTGTTGAGTTTATC+AGG | + | chr1_3:68104265-68104284 | Msa0136270:intron | 25.0% |
| ! | GAACAATCAACTTATGAAAA+AGG | - | chr1_3:68104387-68104406 | None:intergenic | 25.0% |
| !!! | TAAGTTGATTGTTCTGATTT+AGG | + | chr1_3:68104393-68104412 | Msa0136270:intron | 25.0% |
| !! | ATTTTCTTCTGCATCATTTT+TGG | + | chr1_3:68104444-68104463 | Msa0136270:intron | 25.0% |
| !!! | TTTTGGTTGTTTATTGTTGA+AGG | + | chr1_3:68104461-68104480 | Msa0136270:intron | 25.0% |
| AAGAATCGATACTGTAAATG+CGG | - | chr1_3:68102423-68102442 | None:intergenic | 30.0% | |
| GTAGGAAAATAAAACAGGAA+GGG | - | chr1_3:68102710-68102729 | None:intergenic | 30.0% | |
| TGTAGGAAAATAAAACAGGA+AGG | - | chr1_3:68102711-68102730 | None:intergenic | 30.0% | |
| GTAGAAGATGATGAAAATAG+GGG | - | chr1_3:68102756-68102775 | None:intergenic | 30.0% | |
| CAGTAGAAGATGATGAAAAT+AGG | - | chr1_3:68102758-68102777 | None:intergenic | 30.0% | |
| AAATAATTACAGTCAGAACC+TGG | - | chr1_3:68102801-68102820 | None:intergenic | 30.0% | |
| ! | ATTTTACTCCTCGAAATTGT+AGG | + | chr1_3:68103456-68103475 | Msa0136270:intron | 30.0% |
| ! | TTTTACTCCTCGAAATTGTA+GGG | + | chr1_3:68103457-68103476 | Msa0136270:intron | 30.0% |
| TACAAATGAGTGAGTAACAA+GGG | - | chr1_3:68103566-68103585 | None:intergenic | 30.0% | |
| ATACAAATGAGTGAGTAACA+AGG | - | chr1_3:68103567-68103586 | None:intergenic | 30.0% | |
| TTTCCTTGTTGGTATTTCAT+TGG | + | chr1_3:68103602-68103621 | Msa0136270:intron | 30.0% | |
| ! | GCTTTTGATACTTCCATTTA+GGG | + | chr1_3:68103624-68103643 | Msa0136270:intron | 30.0% |
| TAACATTAGGTGATATTCTG+CGG | + | chr1_3:68103812-68103831 | Msa0136270:intron | 30.0% | |
| ! | TTTCTGCGTTAGTTCAATTT+TGG | - | chr1_3:68103866-68103885 | None:intergenic | 30.0% |
| AATTTCTTGCTTGTGGAATT+TGG | + | chr1_3:68104016-68104035 | Msa0136270:intron | 30.0% | |
| ATTTCTTGCTTGTGGAATTT+GGG | + | chr1_3:68104017-68104036 | Msa0136270:intron | 30.0% | |
| CTTCATCTTATTAGAGCATA+TGG | + | chr1_3:68104083-68104102 | Msa0136270:intron | 30.0% | |
| ! | AGCATATGGAGATTAAGTTT+TGG | + | chr1_3:68104097-68104116 | Msa0136270:intron | 30.0% |
| ATTGTGCATATTTATTGCTC+TGG | + | chr1_3:68104138-68104157 | Msa0136270:intron | 30.0% | |
| !!! | ACTGGTCTTTTTTCATAGTT+CGG | + | chr1_3:68104360-68104379 | Msa0136270:intron | 30.0% |
| TTGATTGTTCTGATTTAGGA+AGG | + | chr1_3:68104397-68104416 | Msa0136270:intron | 30.0% | |
| AAAGCTTCAAACTGAATCAA+AGG | - | chr1_3:68104499-68104518 | None:intergenic | 30.0% | |
| !!! | TTGAAGCTTTACCTTTTTTG+TGG | + | chr1_3:68104509-68104528 | Msa0136270:intron | 30.0% |
| !!! | TGAAGCTTTACCTTTTTTGT+GGG | + | chr1_3:68104510-68104529 | Msa0136270:intron | 30.0% |
| !!! | AGTTTTTAGCAGCATTGATA+CGG | + | chr1_3:68104727-68104746 | Msa0136270:CDS | 30.0% |
| ATTTATGTCCACATTGCAAA+TGG | - | chr1_3:68104823-68104842 | None:intergenic | 30.0% | |
| TAAATTTCACTCTGCTTGTT+TGG | + | chr1_3:68104838-68104857 | Msa0136270:CDS | 30.0% | |
| GCATTGTTTCATTCTATTGA+AGG | - | chr1_3:68104928-68104947 | None:intergenic | 30.0% | |
| !!! | TTTATTTTGTGACTGTGTCA+AGG | + | chr1_3:68104968-68104987 | Msa0136270:three_prime_UTR | 30.0% |
| ! | GTTTTGTATCTATCTATGAC+AGG | + | chr1_3:68105160-68105179 | Msa0136270:three_prime_UTR | 30.0% |
| !! | TTTACAGTATCGATTCTTCG+TGG | + | chr1_3:68102425-68102444 | Msa0136270:five_prime_UTR | 35.0% |
| CGATATCATTTCGTCCTAAT+CGG | - | chr1_3:68102562-68102581 | None:intergenic | 35.0% | |
| TATCGGAAAGATTTGATGGA+AGG | + | chr1_3:68102999-68103018 | Msa0136270:CDS | 35.0% | |
| !! | TGAAACCTGTTTCTATCAAC+AGG | - | chr1_3:68103166-68103185 | None:intergenic | 35.0% |
| TTTACTCCTCGAAATTGTAG+GGG | + | chr1_3:68103458-68103477 | Msa0136270:intron | 35.0% | |
| GTTACTCACTCATTTGTATG+TGG | + | chr1_3:68103568-68103587 | Msa0136270:intron | 35.0% | |
| AAGCCAATGAAATACCAACA+AGG | - | chr1_3:68103608-68103627 | None:intergenic | 35.0% | |
| ! | GGCTTTTGATACTTCCATTT+AGG | + | chr1_3:68103623-68103642 | Msa0136270:intron | 35.0% |
| AATTGAACTAACGCAGAAAC+AGG | + | chr1_3:68103867-68103886 | Msa0136270:intron | 35.0% | |
| ! | AAAAGGATTAGCAACACTTC+TGG | - | chr1_3:68103897-68103916 | None:intergenic | 35.0% |
| TCTTTCACGATCTTGTATGT+TGG | + | chr1_3:68103922-68103941 | Msa0136270:intron | 35.0% | |
| !!! | TTTTTTGGAGGATTACGTCA+AGG | - | chr1_3:68103993-68104012 | None:intergenic | 35.0% |
| !! | AGAACTTGTCGATTTACTCA+AGG | + | chr1_3:68104307-68104326 | Msa0136270:intron | 35.0% |
| AGCTCTTCTAATAATCAGAC+TGG | + | chr1_3:68104342-68104361 | Msa0136270:intron | 35.0% | |
| AATTCAATGTCAGATGCACA+GGG | - | chr1_3:68104427-68104446 | None:intergenic | 35.0% | |
| AAATTCAATGTCAGATGCAC+AGG | - | chr1_3:68104428-68104447 | None:intergenic | 35.0% | |
| TCAAACTGAATCAAAGGCAA+TGG | - | chr1_3:68104493-68104512 | None:intergenic | 35.0% | |
| !!! | CTTTACCTTTTTTGTGGGAT+TGG | + | chr1_3:68104515-68104534 | Msa0136270:intron | 35.0% |
| GTAATTAAAGAGTCCTCAGT+TGG | - | chr1_3:68104608-68104627 | None:intergenic | 35.0% | |
| !! | TACTGACTTGACTTCTCAAA+TGG | + | chr1_3:68104625-68104644 | Msa0136270:CDS | 35.0% |
| TTCAAGATGCAAACAGTTCA+GGG | - | chr1_3:68104708-68104727 | None:intergenic | 35.0% | |
| AAACTGATCCATTTGCAATG+TGG | + | chr1_3:68104812-68104831 | Msa0136270:CDS | 35.0% | |
| ACTATACATCTTCGACAGTA+AGG | - | chr1_3:68104893-68104912 | None:intergenic | 35.0% | |
| CAACAGGGTTGAAAATACTT+GGG | - | chr1_3:68105043-68105062 | None:intergenic | 35.0% | |
| ACAACAGGGTTGAAAATACT+TGG | - | chr1_3:68105044-68105063 | None:intergenic | 35.0% | |
| CTCACTCAATTACAACAACA+GGG | - | chr1_3:68105058-68105077 | None:intergenic | 35.0% | |
| ACTCACTCAATTACAACAAC+AGG | - | chr1_3:68105059-68105078 | None:intergenic | 35.0% | |
| ! | TATATTTTATCCTCTGCCAC+TGG | - | chr1_3:68105126-68105145 | None:intergenic | 35.0% |
| CTTCAGAACTATTCCACATC+AGG | + | chr1_3:68102531-68102550 | Msa0136270:CDS | 40.0% | |
| !! | TGATGATGGAAATCTGGAGA+AGG | - | chr1_3:68102605-68102624 | None:intergenic | 40.0% |
| ! | AATAAAACAGGAAGGGTACG+TGG | - | chr1_3:68102703-68102722 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGGAGCGTGTAT+CGG | + | chr1_3:68102982-68103001 | Msa0136270:intron | 40.0% |
| CGTGTATCGGAAAGATTTGA+TGG | + | chr1_3:68102995-68103014 | Msa0136270:CDS | 40.0% | |
| CGTCGATCTCTAGTAAATGA+AGG | + | chr1_3:68103025-68103044 | Msa0136270:CDS | 40.0% | |
| CGATCTCTAGTAAATGAAGG+CGG | + | chr1_3:68103028-68103047 | Msa0136270:CDS | 40.0% | |
| TTTGTATGTCACTGAGTCAC+TGG | + | chr1_3:68103520-68103539 | Msa0136270:CDS | 40.0% | |
| TTGACCAATTTCAACCGACA+AGG | + | chr1_3:68103710-68103729 | Msa0136270:intron | 40.0% | |
| TTCTCATGATGCATCCTTGT+CGG | - | chr1_3:68103727-68103746 | None:intergenic | 40.0% | |
| ATTCAATGTCAGATGCACAG+GGG | - | chr1_3:68104426-68104445 | None:intergenic | 40.0% | |
| GGAAACCAATCCCACAAAAA+AGG | - | chr1_3:68104523-68104542 | None:intergenic | 40.0% | |
| AATCTCTATCACTTTGCCTG+AGG | - | chr1_3:68104544-68104563 | None:intergenic | 40.0% | |
| GCAAAGTGATAGAGATTCAG+TGG | + | chr1_3:68104547-68104566 | Msa0136270:CDS | 40.0% | |
| ATCAAGTGAAGTTCCAACTG+AGG | + | chr1_3:68104592-68104611 | Msa0136270:CDS | 40.0% | |
| ACTTGACTTCTCAAATGGCA+AGG | + | chr1_3:68104630-68104649 | Msa0136270:CDS | 40.0% | |
| CTTCAAGATGCAAACAGTTC+AGG | - | chr1_3:68104709-68104728 | None:intergenic | 40.0% | |
| TGATACGGAATCAGAATCCA+AGG | + | chr1_3:68104742-68104761 | Msa0136270:CDS | 40.0% | |
| ! | ATCAGAATCCAAGGTACTTC+AGG | + | chr1_3:68104751-68104770 | Msa0136270:CDS | 40.0% |
| GATATGCTTGGAATCTTTCG+TGG | + | chr1_3:68104781-68104800 | Msa0136270:CDS | 40.0% | |
| ! | GCTGGCATTTTATAGTGATG+TGG | + | chr1_3:68105004-68105023 | Msa0136270:three_prime_UTR | 40.0% |
| GTAATTGAGTGAGTCGAAAC+CGG | + | chr1_3:68105065-68105084 | Msa0136270:three_prime_UTR | 40.0% | |
| AATCTGGAGAAGGTGAAGAG+TGG | - | chr1_3:68102595-68102614 | None:intergenic | 45.0% | |
| CTTTCACTTCCACTTGCTCT+TGG | - | chr1_3:68103085-68103104 | None:intergenic | 45.0% | |
| AGTGAGTAACAAGGGACCAA+GGG | - | chr1_3:68103558-68103577 | None:intergenic | 45.0% | |
| !! | ACAGCTGCTGATTTCCTTGT+TGG | + | chr1_3:68103591-68103610 | Msa0136270:intron | 45.0% |
| ! | GCATCCTTGTCGGTTGAAAT+TGG | - | chr1_3:68103717-68103736 | None:intergenic | 45.0% |
| TGAATCAAAGGCAATGGCAG+AGG | - | chr1_3:68104487-68104506 | None:intergenic | 45.0% | |
| !! | TTTGTGGGATTGGTTTCCTC+AGG | + | chr1_3:68104525-68104544 | Msa0136270:intron | 45.0% |
| TGATAGAGATTCAGTGGACG+AGG | + | chr1_3:68104553-68104572 | Msa0136270:CDS | 45.0% | |
| !! | TGGTTTGTTCATGCAAGAGC+TGG | - | chr1_3:68104658-68104677 | None:intergenic | 45.0% |
| ! | TCCAAGGTACTTCAGGATTG+TGG | + | chr1_3:68104758-68104777 | Msa0136270:CDS | 45.0% |
| ! | CCAAGGTACTTCAGGATTGT+GGG | + | chr1_3:68104759-68104778 | Msa0136270:CDS | 45.0% |
| TCAGGATTGTGGGATATGCT+TGG | + | chr1_3:68104769-68104788 | Msa0136270:CDS | 45.0% | |
| TGCTTGGAATCTTTCGTGGA+TGG | + | chr1_3:68104785-68104804 | Msa0136270:CDS | 45.0% | |
| ACTCTGCTTGTTTGGATCCT+TGG | + | chr1_3:68104846-68104865 | Msa0136270:CDS | 45.0% | |
| TACACTGCGACTCTTTCGGT+CGG | - | chr1_3:68102485-68102504 | None:intergenic | 50.0% | |
| GCGATACACTGCGACTCTTT+CGG | - | chr1_3:68102489-68102508 | None:intergenic | 50.0% | |
| ! | CTAATCGGTGTCTCCTGATG+TGG | - | chr1_3:68102547-68102566 | None:intergenic | 50.0% |
| ! | CACATCAGGAGACACCGATT+AGG | + | chr1_3:68102545-68102564 | Msa0136270:CDS | 50.0% |
| !! | CGGTGGTGATGATGGAAATC+TGG | - | chr1_3:68102611-68102630 | None:intergenic | 50.0% |
| ! | GAACCTGGAGAAAGTGTGAG+AGG | + | chr1_3:68103055-68103074 | Msa0136270:CDS | 50.0% |
| GTTCCTCTCACACTTTCTCC+AGG | - | chr1_3:68103061-68103080 | None:intergenic | 50.0% | |
| AGAGGAACTCCAAGAGCAAG+TGG | + | chr1_3:68103073-68103092 | Msa0136270:CDS | 50.0% | |
| AGACTCCTTCAGAGGTTGAG+AGG | + | chr1_3:68103136-68103155 | Msa0136270:CDS | 50.0% | |
| GACTCCTTCAGAGGTTGAGA+GGG | + | chr1_3:68103137-68103156 | Msa0136270:CDS | 50.0% | |
| ACTCCTTCAGAGGTTGAGAG+GGG | + | chr1_3:68103138-68103157 | Msa0136270:CDS | 50.0% | |
| ! | GGGAGCCTGTTGATAGAAAC+AGG | + | chr1_3:68103158-68103177 | Msa0136270:CDS | 50.0% |
| GAGTGAGTAACAAGGGACCA+AGG | - | chr1_3:68103559-68103578 | None:intergenic | 50.0% | |
| AGCACAGAGTGAGCCCTAAA+TGG | - | chr1_3:68103640-68103659 | None:intergenic | 50.0% | |
| TATGTTGGTCCACTGTGCTG+TGG | + | chr1_3:68103937-68103956 | Msa0136270:intron | 50.0% | |
| GAACAAACCAGAAAGCCACC+AGG | + | chr1_3:68104668-68104687 | Msa0136270:CDS | 50.0% | |
| ! | CCCACAATCCTGAAGTACCT+TGG | - | chr1_3:68104762-68104781 | None:intergenic | 50.0% |
| GATCCTTGGATTCGCAGTTG+TGG | + | chr1_3:68104860-68104879 | Msa0136270:CDS | 50.0% | |
| TCTCCACAACTGCGAATCCA+AGG | - | chr1_3:68104866-68104885 | None:intergenic | 50.0% | |
| CTGTGTCAAGGATGCTGCAA+CGG | + | chr1_3:68104980-68104999 | Msa0136270:three_prime_UTR | 50.0% | |
| !! | AGCAAGGCATGTATTGGCTC+CGG | - | chr1_3:68105087-68105106 | None:intergenic | 50.0% |
| CATGGGAGCAAGGCATGTAT+TGG | - | chr1_3:68105093-68105112 | None:intergenic | 50.0% | |
| TACATGCCTTGCTCCCATGA+AGG | + | chr1_3:68105094-68105113 | Msa0136270:three_prime_UTR | 50.0% | |
| TTCTCTCCTTCATGGGAGCA+AGG | - | chr1_3:68105103-68105122 | None:intergenic | 50.0% | |
| !! | CCACTGGTTCTCTCCTTCAT+GGG | - | chr1_3:68105110-68105129 | None:intergenic | 50.0% |
| ACGGGGAGAATCATCGTCGT+CGG | - | chr1_3:68102645-68102664 | None:intergenic | 55.0% | |
| ! | ACAGGAAGGGTACGTGGTGA+CGG | - | chr1_3:68102697-68102716 | None:intergenic | 55.0% |
| ! | AATGAAGGCGGCGTTGAACC+TGG | + | chr1_3:68103040-68103059 | Msa0136270:CDS | 55.0% |
| CGCGCAAGTCTCACATCTAC+TGG | - | chr1_3:68103112-68103131 | None:intergenic | 55.0% | |
| CGCGAGAAAGACTCCTTCAG+AGG | + | chr1_3:68103128-68103147 | Msa0136270:CDS | 55.0% | |
| GCTCGACCCCTACAATTTCG+AGG | - | chr1_3:68103467-68103486 | None:intergenic | 55.0% | |
| CTGGCTGACACAGATTCCCT+TGG | + | chr1_3:68103539-68103558 | Msa0136270:CDS | 55.0% | |
| AGTGGTTGTCCACAGCACAG+TGG | - | chr1_3:68103949-68103968 | None:intergenic | 55.0% | |
| AGTGAGTCCTGGTGGCTTTC+TGG | - | chr1_3:68104678-68104697 | None:intergenic | 55.0% | |
| AAAGCCACCAGGACTCACTC+AGG | + | chr1_3:68104679-68104698 | Msa0136270:CDS | 55.0% | |
| CCCATGAAGGAGAGAACCAG+TGG | + | chr1_3:68105107-68105126 | Msa0136270:three_prime_UTR | 55.0% | |
| !! | GCCACTGGTTCTCTCCTTCA+TGG | - | chr1_3:68105111-68105130 | None:intergenic | 55.0% |
| AAGGAGAGAACCAGTGGCAG+AGG | + | chr1_3:68105113-68105132 | Msa0136270:three_prime_UTR | 55.0% | |
| ! | CGTGAAGGCGGTGGTGATGA+TGG | - | chr1_3:68102619-68102638 | None:intergenic | 60.0% |
| CATCGTCGTCGGAGTCGTGA+AGG | - | chr1_3:68102634-68102653 | None:intergenic | 60.0% | |
| TTGTAGTGGCGGCGGATACG+GGG | - | chr1_3:68102662-68102681 | None:intergenic | 60.0% | |
| GTTGTAGTGGCGGCGGATAC+GGG | - | chr1_3:68102663-68102682 | None:intergenic | 60.0% | |
| CGTTGTAGTGGCGGCGGATA+CGG | - | chr1_3:68102664-68102683 | None:intergenic | 60.0% | |
| GCTCCCCTCTCAACCTCTGA+AGG | - | chr1_3:68103144-68103163 | None:intergenic | 60.0% | |
| CAAGGATGCTGCAACGGAGC+TGG | + | chr1_3:68104986-68105005 | Msa0136270:three_prime_UTR | 60.0% | |
| CGTCGTCGGAGTCGTGAAGG+CGG | - | chr1_3:68102631-68102650 | None:intergenic | 65.0% | |
| !! | AGGGTACGTGGTGACGGAGG+CGG | - | chr1_3:68102691-68102710 | None:intergenic | 65.0% |
| !! | GGAAGGGTACGTGGTGACGG+AGG | - | chr1_3:68102694-68102713 | None:intergenic | 65.0% |
| GCCACCAGGACTCACTCAGG+AGG | + | chr1_3:68104682-68104701 | Msa0136270:CDS | 65.0% | |
| GCCTCCTGAGTGAGTCCTGG+TGG | - | chr1_3:68104686-68104705 | None:intergenic | 65.0% | |
| AGGGCCTCCTGAGTGAGTCC+TGG | - | chr1_3:68104689-68104708 | None:intergenic | 65.0% | |
| CGTCGGAGTCGTGAAGGCGG+TGG | - | chr1_3:68102628-68102647 | None:intergenic | 70.0% | |
| GGCGGACGTTGTAGTGGCGG+CGG | - | chr1_3:68102670-68102689 | None:intergenic | 70.0% | |
| GGCGGCGGACGTTGTAGTGG+CGG | - | chr1_3:68102673-68102692 | None:intergenic | 70.0% | |
| GGAGGCGGCGGACGTTGTAG+TGG | - | chr1_3:68102676-68102695 | None:intergenic | 70.0% | |
| !! | GTACGTGGTGACGGAGGCGG+CGG | - | chr1_3:68102688-68102707 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 68102414 | 68105216 | 68102414 | ID=Msa0136270;Name=Msa0136270 |
| chr1_3 | mRNA | 68102414 | 68105216 | 68102414 | ID=Msa0136270-mRNA-1;Parent=Msa0136270;Name=Msa0136270-mRNA-1;_AED=0.25;_eAED=0.25;_QI=107|0.33|0.75|1|1|1|4|282|287 |
| chr1_3 | exon | 68102414 | 68102703 | 68102414 | ID=Msa0136270-mRNA-1:exon:23501;Parent=Msa0136270-mRNA-1 |
| chr1_3 | exon | 68102992 | 68103179 | 68102992 | ID=Msa0136270-mRNA-1:exon:23502;Parent=Msa0136270-mRNA-1 |
| chr1_3 | exon | 68103478 | 68103582 | 68103478 | ID=Msa0136270-mRNA-1:exon:23503;Parent=Msa0136270-mRNA-1 |
| chr1_3 | exon | 68104547 | 68105216 | 68104547 | ID=Msa0136270-mRNA-1:exon:23504;Parent=Msa0136270-mRNA-1 |
| chr1_3 | five_prime_UTR | 68102414 | 68102520 | 68102414 | ID=Msa0136270-mRNA-1:five_prime_utr;Parent=Msa0136270-mRNA-1 |
| chr1_3 | CDS | 68102521 | 68102703 | 68102521 | ID=Msa0136270-mRNA-1:cds;Parent=Msa0136270-mRNA-1 |
| chr1_3 | CDS | 68102992 | 68103179 | 68102992 | ID=Msa0136270-mRNA-1:cds;Parent=Msa0136270-mRNA-1 |
| chr1_3 | CDS | 68103478 | 68103582 | 68103478 | ID=Msa0136270-mRNA-1:cds;Parent=Msa0136270-mRNA-1 |
| chr1_3 | CDS | 68104547 | 68104934 | 68104547 | ID=Msa0136270-mRNA-1:cds;Parent=Msa0136270-mRNA-1 |
| chr1_3 | three_prime_UTR | 68104935 | 68105216 | 68104935 | ID=Msa0136270-mRNA-1:three_prime_utr;Parent=Msa0136270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
